Multiple sequence alignment - TraesCS6D01G036500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G036500 chr6D 100.000 3161 0 0 1 3161 14942155 14938995 0.000000e+00 5838.0
1 TraesCS6D01G036500 chr6D 82.051 1716 241 49 976 2670 14727351 14725682 0.000000e+00 1400.0
2 TraesCS6D01G036500 chr6D 80.855 1802 260 43 968 2739 14732963 14731217 0.000000e+00 1338.0
3 TraesCS6D01G036500 chr6D 80.984 1504 238 37 955 2441 14503317 14504789 0.000000e+00 1149.0
4 TraesCS6D01G036500 chr6D 80.711 1519 239 32 966 2452 14689285 14687789 0.000000e+00 1133.0
5 TraesCS6D01G036500 chr6D 81.989 1227 173 23 1469 2668 14435570 14436775 0.000000e+00 998.0
6 TraesCS6D01G036500 chr6D 79.152 1439 193 57 1762 3156 15349400 15348025 0.000000e+00 896.0
7 TraesCS6D01G036500 chr6D 80.504 1031 149 33 1487 2487 15352522 15351514 0.000000e+00 743.0
8 TraesCS6D01G036500 chr6D 88.325 394 42 4 258 647 387868594 387868201 1.330000e-128 470.0
9 TraesCS6D01G036500 chr6D 97.046 237 5 2 1 235 15341410 15341174 6.350000e-107 398.0
10 TraesCS6D01G036500 chr6D 85.657 251 28 3 2911 3161 14725639 14725397 1.120000e-64 257.0
11 TraesCS6D01G036500 chr6A 94.660 1985 56 12 258 2209 15925993 15924026 0.000000e+00 3033.0
12 TraesCS6D01G036500 chr6A 81.197 1420 229 19 979 2373 15873210 15871804 0.000000e+00 1109.0
13 TraesCS6D01G036500 chr6A 87.324 71 8 1 707 776 613345971 613346041 2.610000e-11 80.5
14 TraesCS6D01G036500 chr1A 94.345 1291 44 8 254 1519 61151879 61153165 0.000000e+00 1953.0
15 TraesCS6D01G036500 chr1A 86.119 353 47 2 2388 2739 494434397 494434046 2.300000e-101 379.0
16 TraesCS6D01G036500 chr1A 87.805 82 4 5 700 778 404487127 404487205 1.210000e-14 91.6
17 TraesCS6D01G036500 chr1A 91.803 61 4 1 699 758 516590371 516590431 2.020000e-12 84.2
18 TraesCS6D01G036500 chr6B 82.360 1746 239 44 953 2668 26512108 26513814 0.000000e+00 1454.0
19 TraesCS6D01G036500 chr6B 81.324 1858 271 51 845 2670 27066120 27064307 0.000000e+00 1439.0
20 TraesCS6D01G036500 chr6B 84.513 452 64 3 258 703 683167662 683167211 2.890000e-120 442.0
21 TraesCS6D01G036500 chr6B 83.525 261 32 6 2908 3161 26513859 26514115 1.900000e-57 233.0
22 TraesCS6D01G036500 chr1B 82.316 1606 236 28 972 2550 48062374 48060790 0.000000e+00 1349.0
23 TraesCS6D01G036500 chr1B 87.393 468 36 9 258 703 585966570 585967036 1.680000e-142 516.0
24 TraesCS6D01G036500 chr1B 84.549 466 50 8 258 703 2026497 2026960 2.890000e-120 442.0
25 TraesCS6D01G036500 chr5D 83.964 1322 162 27 1066 2367 27979237 27977946 0.000000e+00 1221.0
26 TraesCS6D01G036500 chr5D 88.412 466 33 7 258 703 30492783 30493247 2.770000e-150 542.0
27 TraesCS6D01G036500 chr5D 88.525 61 4 3 2413 2470 27977964 27977904 1.570000e-08 71.3
28 TraesCS6D01G036500 chr4B 83.186 1362 187 24 987 2315 575726091 575727443 0.000000e+00 1208.0
29 TraesCS6D01G036500 chr4B 87.786 262 27 5 2413 2670 575727473 575727733 5.120000e-78 302.0
30 TraesCS6D01G036500 chr7D 86.724 467 39 11 258 703 423617742 423617278 6.090000e-137 497.0
31 TraesCS6D01G036500 chr7D 86.481 466 41 8 258 703 534718478 534718015 2.830000e-135 492.0
32 TraesCS6D01G036500 chr7D 97.046 237 5 2 1 235 84925600 84925836 6.350000e-107 398.0
33 TraesCS6D01G036500 chr7A 86.207 464 43 6 258 701 36636332 36636794 1.700000e-132 483.0
34 TraesCS6D01G036500 chr7A 85.552 353 47 3 2388 2739 8457573 8457224 1.790000e-97 366.0
35 TraesCS6D01G036500 chr2D 86.052 466 43 6 258 703 602442932 602442469 6.130000e-132 481.0
36 TraesCS6D01G036500 chr2D 97.458 236 5 1 1 235 285200572 285200337 4.910000e-108 401.0
37 TraesCS6D01G036500 chr2D 97.046 237 5 2 1 235 489131927 489131691 6.350000e-107 398.0
38 TraesCS6D01G036500 chr2D 90.411 73 5 2 705 776 135380269 135380198 9.330000e-16 95.3
39 TraesCS6D01G036500 chr4D 85.746 456 42 11 269 703 64146915 64147368 7.990000e-126 460.0
40 TraesCS6D01G036500 chr4D 97.458 236 5 1 1 235 407293189 407292954 4.910000e-108 401.0
41 TraesCS6D01G036500 chr4D 97.046 237 5 2 1 235 17930681 17930917 6.350000e-107 398.0
42 TraesCS6D01G036500 chr2B 84.764 466 49 8 258 703 380389133 380389596 6.220000e-122 448.0
43 TraesCS6D01G036500 chr2B 90.217 92 5 1 616 703 137989476 137989385 1.990000e-22 117.0
44 TraesCS6D01G036500 chr3D 97.458 236 5 1 1 235 477950111 477950346 4.910000e-108 401.0
45 TraesCS6D01G036500 chr3D 97.046 237 5 2 1 235 486238207 486238443 6.350000e-107 398.0
46 TraesCS6D01G036500 chr3D 97.046 237 5 2 1 235 605656112 605655876 6.350000e-107 398.0
47 TraesCS6D01G036500 chr3D 88.312 77 8 1 700 775 157175751 157175827 1.210000e-14 91.6
48 TraesCS6D01G036500 chr3A 93.243 74 4 1 700 772 20155821 20155894 1.200000e-19 108.0
49 TraesCS6D01G036500 chr3B 83.750 80 11 2 700 778 439676837 439676759 1.220000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G036500 chr6D 14938995 14942155 3160 True 5838.000000 5838 100.000000 1 3161 1 chr6D.!!$R2 3160
1 TraesCS6D01G036500 chr6D 14503317 14504789 1472 False 1149.000000 1149 80.984000 955 2441 1 chr6D.!!$F2 1486
2 TraesCS6D01G036500 chr6D 14687789 14689285 1496 True 1133.000000 1133 80.711000 966 2452 1 chr6D.!!$R1 1486
3 TraesCS6D01G036500 chr6D 14725397 14732963 7566 True 998.333333 1400 82.854333 968 3161 3 chr6D.!!$R5 2193
4 TraesCS6D01G036500 chr6D 14435570 14436775 1205 False 998.000000 998 81.989000 1469 2668 1 chr6D.!!$F1 1199
5 TraesCS6D01G036500 chr6D 15348025 15352522 4497 True 819.500000 896 79.828000 1487 3156 2 chr6D.!!$R6 1669
6 TraesCS6D01G036500 chr6A 15924026 15925993 1967 True 3033.000000 3033 94.660000 258 2209 1 chr6A.!!$R2 1951
7 TraesCS6D01G036500 chr6A 15871804 15873210 1406 True 1109.000000 1109 81.197000 979 2373 1 chr6A.!!$R1 1394
8 TraesCS6D01G036500 chr1A 61151879 61153165 1286 False 1953.000000 1953 94.345000 254 1519 1 chr1A.!!$F1 1265
9 TraesCS6D01G036500 chr6B 27064307 27066120 1813 True 1439.000000 1439 81.324000 845 2670 1 chr6B.!!$R1 1825
10 TraesCS6D01G036500 chr6B 26512108 26514115 2007 False 843.500000 1454 82.942500 953 3161 2 chr6B.!!$F1 2208
11 TraesCS6D01G036500 chr1B 48060790 48062374 1584 True 1349.000000 1349 82.316000 972 2550 1 chr1B.!!$R1 1578
12 TraesCS6D01G036500 chr5D 27977904 27979237 1333 True 646.150000 1221 86.244500 1066 2470 2 chr5D.!!$R1 1404
13 TraesCS6D01G036500 chr4B 575726091 575727733 1642 False 755.000000 1208 85.486000 987 2670 2 chr4B.!!$F1 1683

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
63 64 0.173708 GACGAGCGATGGTCTTTCCT 59.826 55.0 8.67 0.0 37.07 3.36 F
1215 6883 0.116143 AGCTCTCCCACCTCAACTCT 59.884 55.0 0.00 0.0 0.00 3.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1652 7329 0.966875 TTCAGCACATGCCACCATCC 60.967 55.0 0.00 0.00 43.38 3.51 R
3116 11736 0.815734 ATCAGCTGCAGTTGCCATTC 59.184 50.0 24.28 0.46 41.18 2.67 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 8.737168 TTATTGATTGTCTTCCTTATGAGTGG 57.263 34.615 0.00 0.00 0.00 4.00
36 37 4.517285 TGATTGTCTTCCTTATGAGTGGC 58.483 43.478 0.00 0.00 0.00 5.01
37 38 2.672961 TGTCTTCCTTATGAGTGGCG 57.327 50.000 0.00 0.00 0.00 5.69
38 39 1.207089 TGTCTTCCTTATGAGTGGCGG 59.793 52.381 0.00 0.00 0.00 6.13
39 40 1.207329 GTCTTCCTTATGAGTGGCGGT 59.793 52.381 0.00 0.00 0.00 5.68
40 41 1.480954 TCTTCCTTATGAGTGGCGGTC 59.519 52.381 0.00 0.00 0.00 4.79
41 42 0.174845 TTCCTTATGAGTGGCGGTCG 59.825 55.000 0.00 0.00 0.00 4.79
42 43 1.227263 CCTTATGAGTGGCGGTCGG 60.227 63.158 0.00 0.00 0.00 4.79
43 44 1.227263 CTTATGAGTGGCGGTCGGG 60.227 63.158 0.00 0.00 0.00 5.14
44 45 2.644555 CTTATGAGTGGCGGTCGGGG 62.645 65.000 0.00 0.00 0.00 5.73
45 46 3.665515 TATGAGTGGCGGTCGGGGA 62.666 63.158 0.00 0.00 0.00 4.81
58 59 3.148279 GGGGACGAGCGATGGTCT 61.148 66.667 15.41 0.00 33.70 3.85
59 60 2.722201 GGGGACGAGCGATGGTCTT 61.722 63.158 15.41 0.00 33.70 3.01
60 61 1.218316 GGGACGAGCGATGGTCTTT 59.782 57.895 15.41 0.00 33.70 2.52
61 62 0.806492 GGGACGAGCGATGGTCTTTC 60.806 60.000 15.41 0.00 33.70 2.62
62 63 0.806492 GGACGAGCGATGGTCTTTCC 60.806 60.000 15.41 0.00 33.70 3.13
63 64 0.173708 GACGAGCGATGGTCTTTCCT 59.826 55.000 8.67 0.00 37.07 3.36
64 65 1.404391 GACGAGCGATGGTCTTTCCTA 59.596 52.381 8.67 0.00 37.07 2.94
65 66 1.134560 ACGAGCGATGGTCTTTCCTAC 59.865 52.381 0.00 0.00 37.07 3.18
66 67 1.536284 CGAGCGATGGTCTTTCCTACC 60.536 57.143 0.00 0.00 37.53 3.18
75 76 5.888982 TGGTCTTTCCTACCAATCTATCC 57.111 43.478 0.00 0.00 43.99 2.59
76 77 4.658901 TGGTCTTTCCTACCAATCTATCCC 59.341 45.833 0.00 0.00 43.99 3.85
77 78 4.041815 GGTCTTTCCTACCAATCTATCCCC 59.958 50.000 0.00 0.00 36.96 4.81
78 79 4.041815 GTCTTTCCTACCAATCTATCCCCC 59.958 50.000 0.00 0.00 0.00 5.40
79 80 4.077387 TCTTTCCTACCAATCTATCCCCCT 60.077 45.833 0.00 0.00 0.00 4.79
80 81 5.138996 TCTTTCCTACCAATCTATCCCCCTA 59.861 44.000 0.00 0.00 0.00 3.53
81 82 4.694280 TCCTACCAATCTATCCCCCTAG 57.306 50.000 0.00 0.00 0.00 3.02
82 83 3.340049 TCCTACCAATCTATCCCCCTAGG 59.660 52.174 0.06 0.06 0.00 3.02
90 91 2.844362 TCCCCCTAGGAGCATGCG 60.844 66.667 11.48 0.00 40.93 4.73
91 92 4.632974 CCCCCTAGGAGCATGCGC 62.633 72.222 13.62 13.62 38.24 6.09
92 93 4.976925 CCCCTAGGAGCATGCGCG 62.977 72.222 15.49 0.00 45.49 6.86
93 94 4.227134 CCCTAGGAGCATGCGCGT 62.227 66.667 20.11 20.11 45.49 6.01
94 95 2.728180 CCTAGGAGCATGCGCGTA 59.272 61.111 20.19 20.19 45.49 4.42
95 96 1.067416 CCTAGGAGCATGCGCGTAA 59.933 57.895 21.38 6.99 45.49 3.18
96 97 0.319900 CCTAGGAGCATGCGCGTAAT 60.320 55.000 21.38 8.40 45.49 1.89
97 98 1.067846 CCTAGGAGCATGCGCGTAATA 60.068 52.381 21.38 9.02 45.49 0.98
98 99 1.986378 CTAGGAGCATGCGCGTAATAC 59.014 52.381 21.38 5.32 45.49 1.89
99 100 0.389391 AGGAGCATGCGCGTAATACT 59.611 50.000 15.13 2.32 45.49 2.12
100 101 1.202533 AGGAGCATGCGCGTAATACTT 60.203 47.619 15.13 0.00 45.49 2.24
101 102 1.597663 GGAGCATGCGCGTAATACTTT 59.402 47.619 15.49 0.00 45.49 2.66
102 103 2.599848 GGAGCATGCGCGTAATACTTTG 60.600 50.000 15.49 0.00 45.49 2.77
103 104 1.112459 GCATGCGCGTAATACTTTGC 58.888 50.000 8.43 5.05 0.00 3.68
104 105 1.268032 GCATGCGCGTAATACTTTGCT 60.268 47.619 8.43 0.00 0.00 3.91
105 106 2.791158 GCATGCGCGTAATACTTTGCTT 60.791 45.455 8.43 0.00 0.00 3.91
106 107 3.425404 CATGCGCGTAATACTTTGCTTT 58.575 40.909 8.43 0.00 0.00 3.51
107 108 2.845486 TGCGCGTAATACTTTGCTTTG 58.155 42.857 8.43 0.00 0.00 2.77
108 109 2.480802 TGCGCGTAATACTTTGCTTTGA 59.519 40.909 8.43 0.00 0.00 2.69
109 110 3.126171 TGCGCGTAATACTTTGCTTTGAT 59.874 39.130 8.43 0.00 0.00 2.57
110 111 4.330347 TGCGCGTAATACTTTGCTTTGATA 59.670 37.500 8.43 0.00 0.00 2.15
111 112 5.163844 TGCGCGTAATACTTTGCTTTGATAA 60.164 36.000 8.43 0.00 0.00 1.75
112 113 5.169032 GCGCGTAATACTTTGCTTTGATAAC 59.831 40.000 8.43 0.00 0.00 1.89
113 114 6.475207 CGCGTAATACTTTGCTTTGATAACT 58.525 36.000 0.00 0.00 0.00 2.24
114 115 6.959311 CGCGTAATACTTTGCTTTGATAACTT 59.041 34.615 0.00 0.00 0.00 2.66
115 116 7.045612 CGCGTAATACTTTGCTTTGATAACTTG 60.046 37.037 0.00 0.00 0.00 3.16
116 117 7.749126 GCGTAATACTTTGCTTTGATAACTTGT 59.251 33.333 0.00 0.00 0.00 3.16
126 127 8.519492 TGCTTTGATAACTTGTAGATTTTTGC 57.481 30.769 0.00 0.00 0.00 3.68
127 128 8.140628 TGCTTTGATAACTTGTAGATTTTTGCA 58.859 29.630 0.00 0.00 0.00 4.08
128 129 8.977505 GCTTTGATAACTTGTAGATTTTTGCAA 58.022 29.630 0.00 0.00 0.00 4.08
168 169 7.864108 TTTATGACTAATGTTGAGTCCATGG 57.136 36.000 4.97 4.97 42.29 3.66
169 170 5.698741 ATGACTAATGTTGAGTCCATGGA 57.301 39.130 11.44 11.44 42.29 3.41
170 171 5.698741 TGACTAATGTTGAGTCCATGGAT 57.301 39.130 19.62 7.07 42.29 3.41
171 172 6.065976 TGACTAATGTTGAGTCCATGGATT 57.934 37.500 19.62 14.78 42.29 3.01
172 173 7.194112 TGACTAATGTTGAGTCCATGGATTA 57.806 36.000 19.62 9.48 42.29 1.75
173 174 7.805163 TGACTAATGTTGAGTCCATGGATTAT 58.195 34.615 19.62 7.29 42.29 1.28
174 175 8.933653 TGACTAATGTTGAGTCCATGGATTATA 58.066 33.333 19.62 3.54 42.29 0.98
175 176 9.209175 GACTAATGTTGAGTCCATGGATTATAC 57.791 37.037 19.62 14.82 37.89 1.47
176 177 7.872993 ACTAATGTTGAGTCCATGGATTATACG 59.127 37.037 19.62 5.28 0.00 3.06
177 178 4.377021 TGTTGAGTCCATGGATTATACGC 58.623 43.478 19.62 7.53 0.00 4.42
178 179 4.141824 TGTTGAGTCCATGGATTATACGCA 60.142 41.667 19.62 10.30 0.00 5.24
179 180 3.990092 TGAGTCCATGGATTATACGCAC 58.010 45.455 19.62 1.60 0.00 5.34
180 181 3.641436 TGAGTCCATGGATTATACGCACT 59.359 43.478 19.62 7.22 0.00 4.40
181 182 4.100963 TGAGTCCATGGATTATACGCACTT 59.899 41.667 19.62 0.00 0.00 3.16
182 183 5.036117 AGTCCATGGATTATACGCACTTT 57.964 39.130 19.62 0.00 0.00 2.66
183 184 5.057149 AGTCCATGGATTATACGCACTTTC 58.943 41.667 19.62 0.00 0.00 2.62
184 185 5.057149 GTCCATGGATTATACGCACTTTCT 58.943 41.667 19.62 0.00 0.00 2.52
185 186 5.527582 GTCCATGGATTATACGCACTTTCTT 59.472 40.000 19.62 0.00 0.00 2.52
186 187 6.038271 GTCCATGGATTATACGCACTTTCTTT 59.962 38.462 19.62 0.00 0.00 2.52
187 188 6.260050 TCCATGGATTATACGCACTTTCTTTC 59.740 38.462 11.44 0.00 0.00 2.62
188 189 6.260936 CCATGGATTATACGCACTTTCTTTCT 59.739 38.462 5.56 0.00 0.00 2.52
189 190 7.201732 CCATGGATTATACGCACTTTCTTTCTT 60.202 37.037 5.56 0.00 0.00 2.52
190 191 7.303634 TGGATTATACGCACTTTCTTTCTTC 57.696 36.000 0.00 0.00 0.00 2.87
191 192 7.103641 TGGATTATACGCACTTTCTTTCTTCT 58.896 34.615 0.00 0.00 0.00 2.85
192 193 8.255206 TGGATTATACGCACTTTCTTTCTTCTA 58.745 33.333 0.00 0.00 0.00 2.10
193 194 8.541312 GGATTATACGCACTTTCTTTCTTCTAC 58.459 37.037 0.00 0.00 0.00 2.59
194 195 7.823149 TTATACGCACTTTCTTTCTTCTACC 57.177 36.000 0.00 0.00 0.00 3.18
195 196 4.067972 ACGCACTTTCTTTCTTCTACCA 57.932 40.909 0.00 0.00 0.00 3.25
196 197 4.642429 ACGCACTTTCTTTCTTCTACCAT 58.358 39.130 0.00 0.00 0.00 3.55
197 198 5.063880 ACGCACTTTCTTTCTTCTACCATT 58.936 37.500 0.00 0.00 0.00 3.16
198 199 5.049405 ACGCACTTTCTTTCTTCTACCATTG 60.049 40.000 0.00 0.00 0.00 2.82
199 200 5.157067 GCACTTTCTTTCTTCTACCATTGC 58.843 41.667 0.00 0.00 0.00 3.56
200 201 5.048434 GCACTTTCTTTCTTCTACCATTGCT 60.048 40.000 0.00 0.00 0.00 3.91
201 202 6.149474 GCACTTTCTTTCTTCTACCATTGCTA 59.851 38.462 0.00 0.00 0.00 3.49
202 203 7.625185 GCACTTTCTTTCTTCTACCATTGCTAG 60.625 40.741 0.00 0.00 0.00 3.42
203 204 6.372937 ACTTTCTTTCTTCTACCATTGCTAGC 59.627 38.462 8.10 8.10 0.00 3.42
204 205 5.683876 TCTTTCTTCTACCATTGCTAGCT 57.316 39.130 17.23 0.00 0.00 3.32
205 206 6.054860 TCTTTCTTCTACCATTGCTAGCTT 57.945 37.500 17.23 0.00 0.00 3.74
206 207 6.109359 TCTTTCTTCTACCATTGCTAGCTTC 58.891 40.000 17.23 0.00 0.00 3.86
207 208 5.683876 TTCTTCTACCATTGCTAGCTTCT 57.316 39.130 17.23 0.00 0.00 2.85
208 209 5.269505 TCTTCTACCATTGCTAGCTTCTC 57.730 43.478 17.23 0.00 0.00 2.87
209 210 4.959210 TCTTCTACCATTGCTAGCTTCTCT 59.041 41.667 17.23 0.00 0.00 3.10
210 211 6.129874 TCTTCTACCATTGCTAGCTTCTCTA 58.870 40.000 17.23 0.00 0.00 2.43
211 212 6.607600 TCTTCTACCATTGCTAGCTTCTCTAA 59.392 38.462 17.23 0.25 0.00 2.10
212 213 6.985653 TCTACCATTGCTAGCTTCTCTAAT 57.014 37.500 17.23 2.96 0.00 1.73
213 214 8.478775 TTCTACCATTGCTAGCTTCTCTAATA 57.521 34.615 17.23 0.00 0.00 0.98
214 215 8.657387 TCTACCATTGCTAGCTTCTCTAATAT 57.343 34.615 17.23 1.12 0.00 1.28
215 216 8.744652 TCTACCATTGCTAGCTTCTCTAATATC 58.255 37.037 17.23 0.00 0.00 1.63
216 217 6.393990 ACCATTGCTAGCTTCTCTAATATCG 58.606 40.000 17.23 0.49 0.00 2.92
217 218 5.290643 CCATTGCTAGCTTCTCTAATATCGC 59.709 44.000 17.23 0.00 0.00 4.58
218 219 5.453567 TTGCTAGCTTCTCTAATATCGCA 57.546 39.130 17.23 0.00 0.00 5.10
219 220 4.799678 TGCTAGCTTCTCTAATATCGCAC 58.200 43.478 17.23 0.00 0.00 5.34
220 221 4.278419 TGCTAGCTTCTCTAATATCGCACA 59.722 41.667 17.23 0.00 0.00 4.57
221 222 4.619336 GCTAGCTTCTCTAATATCGCACAC 59.381 45.833 7.70 0.00 0.00 3.82
222 223 4.927978 AGCTTCTCTAATATCGCACACT 57.072 40.909 0.00 0.00 0.00 3.55
223 224 5.269505 AGCTTCTCTAATATCGCACACTT 57.730 39.130 0.00 0.00 0.00 3.16
224 225 5.665459 AGCTTCTCTAATATCGCACACTTT 58.335 37.500 0.00 0.00 0.00 2.66
225 226 6.109359 AGCTTCTCTAATATCGCACACTTTT 58.891 36.000 0.00 0.00 0.00 2.27
226 227 6.256757 AGCTTCTCTAATATCGCACACTTTTC 59.743 38.462 0.00 0.00 0.00 2.29
227 228 6.569228 TTCTCTAATATCGCACACTTTTCG 57.431 37.500 0.00 0.00 0.00 3.46
228 229 4.503007 TCTCTAATATCGCACACTTTTCGC 59.497 41.667 0.00 0.00 0.00 4.70
229 230 2.825086 AATATCGCACACTTTTCGCC 57.175 45.000 0.00 0.00 0.00 5.54
230 231 0.650512 ATATCGCACACTTTTCGCCG 59.349 50.000 0.00 0.00 0.00 6.46
231 232 1.355796 TATCGCACACTTTTCGCCGG 61.356 55.000 0.00 0.00 0.00 6.13
232 233 3.645975 CGCACACTTTTCGCCGGT 61.646 61.111 1.90 0.00 0.00 5.28
233 234 2.311701 CGCACACTTTTCGCCGGTA 61.312 57.895 1.90 0.00 0.00 4.02
234 235 1.632046 CGCACACTTTTCGCCGGTAT 61.632 55.000 1.90 0.00 0.00 2.73
235 236 1.361793 GCACACTTTTCGCCGGTATA 58.638 50.000 1.90 0.00 0.00 1.47
236 237 1.061566 GCACACTTTTCGCCGGTATAC 59.938 52.381 1.90 0.00 0.00 1.47
237 238 2.613691 CACACTTTTCGCCGGTATACT 58.386 47.619 1.90 0.00 0.00 2.12
238 239 3.772932 CACACTTTTCGCCGGTATACTA 58.227 45.455 1.90 0.00 0.00 1.82
239 240 4.175516 CACACTTTTCGCCGGTATACTAA 58.824 43.478 1.90 0.00 0.00 2.24
240 241 4.266976 CACACTTTTCGCCGGTATACTAAG 59.733 45.833 1.90 2.59 0.00 2.18
241 242 4.082026 ACACTTTTCGCCGGTATACTAAGT 60.082 41.667 1.90 3.24 0.00 2.24
242 243 4.266976 CACTTTTCGCCGGTATACTAAGTG 59.733 45.833 1.90 11.82 36.44 3.16
243 244 2.497107 TTCGCCGGTATACTAAGTGC 57.503 50.000 1.90 0.00 0.00 4.40
244 245 1.391577 TCGCCGGTATACTAAGTGCA 58.608 50.000 1.90 0.00 0.00 4.57
245 246 1.958579 TCGCCGGTATACTAAGTGCAT 59.041 47.619 1.90 0.00 0.00 3.96
246 247 2.058798 CGCCGGTATACTAAGTGCATG 58.941 52.381 1.90 0.00 0.00 4.06
247 248 1.798813 GCCGGTATACTAAGTGCATGC 59.201 52.381 11.82 11.82 0.00 4.06
248 249 2.805295 GCCGGTATACTAAGTGCATGCA 60.805 50.000 18.46 18.46 0.00 3.96
249 250 3.059884 CCGGTATACTAAGTGCATGCAG 58.940 50.000 23.41 12.18 0.00 4.41
250 251 3.492656 CCGGTATACTAAGTGCATGCAGT 60.493 47.826 23.41 22.90 0.00 4.40
251 252 4.261867 CCGGTATACTAAGTGCATGCAGTA 60.262 45.833 27.68 21.70 0.00 2.74
252 253 4.680110 CGGTATACTAAGTGCATGCAGTAC 59.320 45.833 27.68 19.61 0.00 2.73
256 257 4.749245 ACTAAGTGCATGCAGTACAAAC 57.251 40.909 27.68 11.18 35.00 2.93
282 283 8.180920 CCATCAATATGTGACACGTTAAATCAA 58.819 33.333 5.45 0.00 39.72 2.57
369 370 2.591715 ATTCCTGCGGCCGTATGC 60.592 61.111 28.70 10.60 40.16 3.14
404 406 2.413453 CACGCTTCTTAGCCTCAACTTC 59.587 50.000 0.00 0.00 44.86 3.01
443 453 3.713248 AGTGGATATTCATGAGCCAGTGA 59.287 43.478 12.65 0.00 31.39 3.41
464 474 7.704047 CAGTGAATCGAATGTCTCTTCATCTAA 59.296 37.037 0.00 0.00 0.00 2.10
498 508 5.235850 TCTCCCAAAACAAGTACTGCATA 57.764 39.130 0.00 0.00 0.00 3.14
669 697 4.553429 CGCGTTCCAGTTAAATGATTTGAC 59.447 41.667 4.10 4.82 0.00 3.18
930 964 1.341531 CCTTCCTCACAGTGACGAGTT 59.658 52.381 0.00 0.00 0.00 3.01
1028 1071 1.472376 GCTCCGAGAGTCCATCCTTTG 60.472 57.143 0.00 0.00 31.39 2.77
1215 6883 0.116143 AGCTCTCCCACCTCAACTCT 59.884 55.000 0.00 0.00 0.00 3.24
2148 7829 6.327934 CAAAGGAGAGATGCCAACTAATTTG 58.672 40.000 0.00 0.00 34.63 2.32
2210 7894 3.334272 GCGTATGGCATAACAAAGTCC 57.666 47.619 9.14 0.00 42.87 3.85
2211 7895 2.680841 GCGTATGGCATAACAAAGTCCA 59.319 45.455 9.14 0.00 42.87 4.02
2214 10772 4.438200 CGTATGGCATAACAAAGTCCAACC 60.438 45.833 9.14 0.00 0.00 3.77
2217 10775 3.181434 TGGCATAACAAAGTCCAACCTCT 60.181 43.478 0.00 0.00 0.00 3.69
2249 10807 6.215845 GTGTTCTTTGCCTAACATGATGTTT 58.784 36.000 16.75 1.02 41.45 2.83
2250 10808 6.701400 GTGTTCTTTGCCTAACATGATGTTTT 59.299 34.615 16.75 0.00 41.45 2.43
2272 10831 8.768019 GTTTTGGTTGTTTTCTATAGTACGTCT 58.232 33.333 0.00 0.00 0.00 4.18
2289 10859 4.382291 ACGTCTTGTTACATGCCAGTTAA 58.618 39.130 0.00 0.00 0.00 2.01
2315 10887 6.936900 TCATTGCTAAATGCTAACTCCCTATC 59.063 38.462 0.00 0.00 42.55 2.08
2316 10888 5.228945 TGCTAAATGCTAACTCCCTATCC 57.771 43.478 0.00 0.00 43.37 2.59
2317 10889 4.041691 TGCTAAATGCTAACTCCCTATCCC 59.958 45.833 0.00 0.00 43.37 3.85
2318 10890 4.287326 GCTAAATGCTAACTCCCTATCCCT 59.713 45.833 0.00 0.00 38.95 4.20
2319 10891 5.484290 GCTAAATGCTAACTCCCTATCCCTA 59.516 44.000 0.00 0.00 38.95 3.53
2320 10892 6.157123 GCTAAATGCTAACTCCCTATCCCTAT 59.843 42.308 0.00 0.00 38.95 2.57
2324 10896 5.087323 TGCTAACTCCCTATCCCTATGAAG 58.913 45.833 0.00 0.00 0.00 3.02
2335 10907 8.772250 CCCTATCCCTATGAAGCTGATAATTTA 58.228 37.037 0.00 0.00 0.00 1.40
2341 10913 8.743714 CCCTATGAAGCTGATAATTTAATTCCC 58.256 37.037 0.00 0.00 0.00 3.97
2342 10914 9.300681 CCTATGAAGCTGATAATTTAATTCCCA 57.699 33.333 0.00 0.00 0.00 4.37
2350 10927 7.011389 GCTGATAATTTAATTCCCAAAACCTGC 59.989 37.037 0.00 0.00 0.00 4.85
2367 10944 3.753272 ACCTGCTATGTTGATGTTGTCAC 59.247 43.478 0.00 0.00 36.32 3.67
2368 10945 4.005650 CCTGCTATGTTGATGTTGTCACT 58.994 43.478 0.00 0.00 36.32 3.41
2369 10946 4.093998 CCTGCTATGTTGATGTTGTCACTC 59.906 45.833 0.00 0.00 36.32 3.51
2370 10947 4.002982 TGCTATGTTGATGTTGTCACTCC 58.997 43.478 0.00 0.00 36.32 3.85
2371 10948 4.256920 GCTATGTTGATGTTGTCACTCCT 58.743 43.478 0.00 0.00 36.32 3.69
2372 10949 4.697352 GCTATGTTGATGTTGTCACTCCTT 59.303 41.667 0.00 0.00 36.32 3.36
2373 10950 5.874810 GCTATGTTGATGTTGTCACTCCTTA 59.125 40.000 0.00 0.00 36.32 2.69
2374 10951 6.183360 GCTATGTTGATGTTGTCACTCCTTAC 60.183 42.308 0.00 0.00 36.32 2.34
2489 11068 8.527810 GGTGGACTAATTTTATGATGAAACCAA 58.472 33.333 0.00 0.00 0.00 3.67
2529 11108 6.699575 AAGCAAAAGAGTAATGTTGTGTCT 57.300 33.333 0.00 0.00 0.00 3.41
2530 11109 7.801716 AAGCAAAAGAGTAATGTTGTGTCTA 57.198 32.000 0.00 0.00 0.00 2.59
2538 11117 7.680730 AGAGTAATGTTGTGTCTATTTCCACT 58.319 34.615 0.00 0.00 32.76 4.00
2543 11122 6.371809 TGTTGTGTCTATTTCCACTGAAAC 57.628 37.500 0.00 0.00 42.97 2.78
2544 11123 5.883115 TGTTGTGTCTATTTCCACTGAAACA 59.117 36.000 0.00 0.00 42.97 2.83
2569 11148 3.805971 TCAGTATGATCTGCTTTCATGCG 59.194 43.478 0.00 0.00 42.56 4.73
2708 11308 8.267183 TCTCATCTGCCTTTTGATATCTTTACA 58.733 33.333 3.98 0.00 0.00 2.41
2710 11310 8.049117 TCATCTGCCTTTTGATATCTTTACACT 58.951 33.333 3.98 0.00 0.00 3.55
2715 11315 9.691362 TGCCTTTTGATATCTTTACACTTTTTC 57.309 29.630 3.98 0.00 0.00 2.29
2716 11316 9.691362 GCCTTTTGATATCTTTACACTTTTTCA 57.309 29.630 3.98 0.00 0.00 2.69
2748 11348 6.882610 TTTTGTCTATTCAGTGACTGCATT 57.117 33.333 7.93 0.00 34.57 3.56
2755 11355 4.556942 TTCAGTGACTGCATTTGTGAAG 57.443 40.909 7.93 0.00 0.00 3.02
2756 11356 2.291465 TCAGTGACTGCATTTGTGAAGC 59.709 45.455 7.93 0.00 0.00 3.86
2758 11358 1.337703 GTGACTGCATTTGTGAAGCCA 59.662 47.619 0.00 0.00 0.00 4.75
2764 11364 3.391965 TGCATTTGTGAAGCCATTGTTC 58.608 40.909 0.00 0.00 0.00 3.18
2765 11365 3.181468 TGCATTTGTGAAGCCATTGTTCA 60.181 39.130 0.00 0.00 0.00 3.18
2766 11366 3.808726 GCATTTGTGAAGCCATTGTTCAA 59.191 39.130 0.00 0.00 35.71 2.69
2769 11369 6.513720 GCATTTGTGAAGCCATTGTTCAAAAT 60.514 34.615 0.00 0.00 35.71 1.82
2774 11374 5.405269 GTGAAGCCATTGTTCAAAATACCAC 59.595 40.000 0.00 0.00 35.71 4.16
2777 11377 6.112927 AGCCATTGTTCAAAATACCACATT 57.887 33.333 0.00 0.00 0.00 2.71
2778 11378 6.532826 AGCCATTGTTCAAAATACCACATTT 58.467 32.000 0.00 0.00 0.00 2.32
2824 11424 1.246649 ATGTGAAGTCGCAATGCCAA 58.753 45.000 0.00 0.00 40.04 4.52
2858 11458 3.655276 ATTTGTTGCTTTGAGCTGAGG 57.345 42.857 0.00 0.00 42.97 3.86
2861 11461 3.207265 TGTTGCTTTGAGCTGAGGTAA 57.793 42.857 0.00 0.00 42.97 2.85
2867 11467 2.743636 TTGAGCTGAGGTAAAGGTCG 57.256 50.000 0.00 0.00 43.53 4.79
2869 11469 1.544691 TGAGCTGAGGTAAAGGTCGTC 59.455 52.381 0.00 0.00 43.53 4.20
2875 11475 2.035449 TGAGGTAAAGGTCGTCACACAG 59.965 50.000 0.00 0.00 0.00 3.66
2878 11478 2.206750 GTAAAGGTCGTCACACAGCAA 58.793 47.619 0.00 0.00 0.00 3.91
2884 11484 2.135139 GTCGTCACACAGCAATGAGAA 58.865 47.619 0.00 0.00 0.00 2.87
2893 11493 1.815003 CAGCAATGAGAACTTCCACCC 59.185 52.381 0.00 0.00 0.00 4.61
2894 11494 1.425066 AGCAATGAGAACTTCCACCCA 59.575 47.619 0.00 0.00 0.00 4.51
2897 11497 4.016444 GCAATGAGAACTTCCACCCATTA 58.984 43.478 0.00 0.00 0.00 1.90
2898 11498 4.142381 GCAATGAGAACTTCCACCCATTAC 60.142 45.833 0.00 0.00 0.00 1.89
2972 11585 6.288294 TGTGTTCTAGCTGTGTTTAATGAGT 58.712 36.000 0.00 0.00 0.00 3.41
3022 11642 7.866729 TGTTACCATGCCATTATATACAAACG 58.133 34.615 0.00 0.00 0.00 3.60
3038 11658 3.851098 CAAACGTTTTCCCTGTTTGGAA 58.149 40.909 11.66 0.00 45.30 3.53
3078 11698 8.517878 CAGCCATTTAGATCTGAAAAAGAAGAA 58.482 33.333 5.18 0.00 38.79 2.52
3115 11735 9.691362 AAATTAGTTGTATTGTGTAAAAGCTGG 57.309 29.630 0.00 0.00 0.00 4.85
3116 11736 5.705609 AGTTGTATTGTGTAAAAGCTGGG 57.294 39.130 0.00 0.00 0.00 4.45
3136 11756 1.203994 GAATGGCAACTGCAGCTGATT 59.796 47.619 21.10 11.91 44.36 2.57
3147 11767 4.394300 ACTGCAGCTGATTATTGACAAGAC 59.606 41.667 20.43 0.00 0.00 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 9.177608 CCACTCATAAGGAAGACAATCAATAAA 57.822 33.333 0.00 0.00 0.00 1.40
10 11 7.283127 GCCACTCATAAGGAAGACAATCAATAA 59.717 37.037 0.00 0.00 0.00 1.40
11 12 6.767902 GCCACTCATAAGGAAGACAATCAATA 59.232 38.462 0.00 0.00 0.00 1.90
12 13 5.591877 GCCACTCATAAGGAAGACAATCAAT 59.408 40.000 0.00 0.00 0.00 2.57
13 14 4.943705 GCCACTCATAAGGAAGACAATCAA 59.056 41.667 0.00 0.00 0.00 2.57
14 15 4.517285 GCCACTCATAAGGAAGACAATCA 58.483 43.478 0.00 0.00 0.00 2.57
15 16 3.557595 CGCCACTCATAAGGAAGACAATC 59.442 47.826 0.00 0.00 0.00 2.67
16 17 3.535561 CGCCACTCATAAGGAAGACAAT 58.464 45.455 0.00 0.00 0.00 2.71
17 18 2.354704 CCGCCACTCATAAGGAAGACAA 60.355 50.000 0.00 0.00 0.00 3.18
18 19 1.207089 CCGCCACTCATAAGGAAGACA 59.793 52.381 0.00 0.00 0.00 3.41
19 20 1.207329 ACCGCCACTCATAAGGAAGAC 59.793 52.381 0.00 0.00 0.00 3.01
20 21 1.480954 GACCGCCACTCATAAGGAAGA 59.519 52.381 0.00 0.00 0.00 2.87
21 22 1.802880 CGACCGCCACTCATAAGGAAG 60.803 57.143 0.00 0.00 0.00 3.46
22 23 0.174845 CGACCGCCACTCATAAGGAA 59.825 55.000 0.00 0.00 0.00 3.36
23 24 1.672854 CCGACCGCCACTCATAAGGA 61.673 60.000 0.00 0.00 0.00 3.36
24 25 1.227263 CCGACCGCCACTCATAAGG 60.227 63.158 0.00 0.00 0.00 2.69
25 26 1.227263 CCCGACCGCCACTCATAAG 60.227 63.158 0.00 0.00 0.00 1.73
26 27 2.727392 CCCCGACCGCCACTCATAA 61.727 63.158 0.00 0.00 0.00 1.90
27 28 3.151710 CCCCGACCGCCACTCATA 61.152 66.667 0.00 0.00 0.00 2.15
37 38 4.570663 CATCGCTCGTCCCCGACC 62.571 72.222 0.00 0.00 38.40 4.79
38 39 4.570663 CCATCGCTCGTCCCCGAC 62.571 72.222 0.00 0.00 38.40 4.79
40 41 4.570663 GACCATCGCTCGTCCCCG 62.571 72.222 0.00 0.00 0.00 5.73
41 42 2.240162 AAAGACCATCGCTCGTCCCC 62.240 60.000 0.00 0.00 0.00 4.81
42 43 0.806492 GAAAGACCATCGCTCGTCCC 60.806 60.000 0.00 0.00 0.00 4.46
43 44 0.806492 GGAAAGACCATCGCTCGTCC 60.806 60.000 0.00 0.00 38.79 4.79
44 45 0.173708 AGGAAAGACCATCGCTCGTC 59.826 55.000 0.00 0.00 42.04 4.20
45 46 1.134560 GTAGGAAAGACCATCGCTCGT 59.865 52.381 0.00 0.00 42.04 4.18
46 47 1.536284 GGTAGGAAAGACCATCGCTCG 60.536 57.143 0.00 0.00 42.04 5.03
47 48 1.480954 TGGTAGGAAAGACCATCGCTC 59.519 52.381 0.00 0.00 42.15 5.03
48 49 1.568504 TGGTAGGAAAGACCATCGCT 58.431 50.000 0.00 0.00 42.15 4.93
49 50 2.396590 TTGGTAGGAAAGACCATCGC 57.603 50.000 0.00 0.00 46.29 4.58
50 51 4.408182 AGATTGGTAGGAAAGACCATCG 57.592 45.455 0.00 0.00 46.29 3.84
51 52 6.468543 GGATAGATTGGTAGGAAAGACCATC 58.531 44.000 0.00 0.00 46.29 3.51
52 53 5.310857 GGGATAGATTGGTAGGAAAGACCAT 59.689 44.000 0.00 0.00 46.29 3.55
53 54 4.658901 GGGATAGATTGGTAGGAAAGACCA 59.341 45.833 0.00 0.00 45.38 4.02
54 55 4.041815 GGGGATAGATTGGTAGGAAAGACC 59.958 50.000 0.00 0.00 37.49 3.85
55 56 4.041815 GGGGGATAGATTGGTAGGAAAGAC 59.958 50.000 0.00 0.00 0.00 3.01
56 57 4.077387 AGGGGGATAGATTGGTAGGAAAGA 60.077 45.833 0.00 0.00 0.00 2.52
57 58 4.243643 AGGGGGATAGATTGGTAGGAAAG 58.756 47.826 0.00 0.00 0.00 2.62
58 59 4.311208 AGGGGGATAGATTGGTAGGAAA 57.689 45.455 0.00 0.00 0.00 3.13
59 60 4.202901 CCTAGGGGGATAGATTGGTAGGAA 60.203 50.000 0.00 0.00 37.23 3.36
60 61 3.340049 CCTAGGGGGATAGATTGGTAGGA 59.660 52.174 0.00 0.00 37.23 2.94
61 62 3.340049 TCCTAGGGGGATAGATTGGTAGG 59.660 52.174 9.46 0.00 39.58 3.18
62 63 4.615513 CTCCTAGGGGGATAGATTGGTAG 58.384 52.174 9.46 0.00 44.15 3.18
63 64 3.246021 GCTCCTAGGGGGATAGATTGGTA 60.246 52.174 11.65 0.00 44.15 3.25
64 65 2.495572 GCTCCTAGGGGGATAGATTGGT 60.496 54.545 11.65 0.00 44.15 3.67
65 66 2.192263 GCTCCTAGGGGGATAGATTGG 58.808 57.143 11.65 0.00 44.15 3.16
66 67 2.907892 TGCTCCTAGGGGGATAGATTG 58.092 52.381 11.65 0.00 44.15 2.67
67 68 3.458831 CATGCTCCTAGGGGGATAGATT 58.541 50.000 16.38 0.00 44.15 2.40
68 69 2.896153 GCATGCTCCTAGGGGGATAGAT 60.896 54.545 16.38 0.00 44.15 1.98
69 70 1.553417 GCATGCTCCTAGGGGGATAGA 60.553 57.143 16.38 0.00 44.15 1.98
70 71 0.908198 GCATGCTCCTAGGGGGATAG 59.092 60.000 16.38 11.27 44.15 2.08
71 72 0.904865 CGCATGCTCCTAGGGGGATA 60.905 60.000 16.38 0.00 44.15 2.59
72 73 2.219875 CGCATGCTCCTAGGGGGAT 61.220 63.158 10.43 10.43 44.15 3.85
73 74 2.844362 CGCATGCTCCTAGGGGGA 60.844 66.667 17.13 8.46 42.77 4.81
74 75 4.632974 GCGCATGCTCCTAGGGGG 62.633 72.222 17.13 4.51 38.39 5.40
75 76 4.976925 CGCGCATGCTCCTAGGGG 62.977 72.222 17.13 6.61 39.65 4.79
76 77 2.363711 TTACGCGCATGCTCCTAGGG 62.364 60.000 17.13 10.41 39.65 3.53
77 78 0.319900 ATTACGCGCATGCTCCTAGG 60.320 55.000 17.13 0.82 39.65 3.02
78 79 1.986378 GTATTACGCGCATGCTCCTAG 59.014 52.381 17.13 0.00 39.65 3.02
79 80 1.611977 AGTATTACGCGCATGCTCCTA 59.388 47.619 17.13 0.00 39.65 2.94
80 81 0.389391 AGTATTACGCGCATGCTCCT 59.611 50.000 17.13 0.00 39.65 3.69
81 82 1.217882 AAGTATTACGCGCATGCTCC 58.782 50.000 17.13 5.62 39.65 4.70
82 83 2.629022 CAAAGTATTACGCGCATGCTC 58.371 47.619 17.13 6.91 39.65 4.26
83 84 1.268032 GCAAAGTATTACGCGCATGCT 60.268 47.619 17.13 4.63 39.65 3.79
84 85 1.112459 GCAAAGTATTACGCGCATGC 58.888 50.000 5.73 7.91 37.91 4.06
85 86 2.737467 AGCAAAGTATTACGCGCATG 57.263 45.000 5.73 0.00 32.44 4.06
86 87 3.126171 TCAAAGCAAAGTATTACGCGCAT 59.874 39.130 5.73 0.18 32.44 4.73
87 88 2.480802 TCAAAGCAAAGTATTACGCGCA 59.519 40.909 5.73 0.00 32.44 6.09
88 89 3.111958 TCAAAGCAAAGTATTACGCGC 57.888 42.857 5.73 0.00 32.44 6.86
89 90 6.475207 AGTTATCAAAGCAAAGTATTACGCG 58.525 36.000 3.53 3.53 32.44 6.01
90 91 7.749126 ACAAGTTATCAAAGCAAAGTATTACGC 59.251 33.333 0.00 0.00 0.00 4.42
100 101 8.977505 GCAAAAATCTACAAGTTATCAAAGCAA 58.022 29.630 0.00 0.00 0.00 3.91
101 102 8.140628 TGCAAAAATCTACAAGTTATCAAAGCA 58.859 29.630 0.00 0.00 0.00 3.91
102 103 8.519492 TGCAAAAATCTACAAGTTATCAAAGC 57.481 30.769 0.00 0.00 0.00 3.51
142 143 9.559732 CCATGGACTCAACATTAGTCATAAATA 57.440 33.333 5.56 0.00 44.25 1.40
143 144 8.274322 TCCATGGACTCAACATTAGTCATAAAT 58.726 33.333 11.44 0.00 44.25 1.40
144 145 7.629157 TCCATGGACTCAACATTAGTCATAAA 58.371 34.615 11.44 0.00 44.25 1.40
145 146 7.194112 TCCATGGACTCAACATTAGTCATAA 57.806 36.000 11.44 0.00 44.25 1.90
146 147 6.806668 TCCATGGACTCAACATTAGTCATA 57.193 37.500 11.44 0.00 44.25 2.15
147 148 5.698741 TCCATGGACTCAACATTAGTCAT 57.301 39.130 11.44 0.00 44.25 3.06
148 149 5.698741 ATCCATGGACTCAACATTAGTCA 57.301 39.130 18.99 0.00 44.25 3.41
149 150 9.209175 GTATAATCCATGGACTCAACATTAGTC 57.791 37.037 18.99 3.98 42.19 2.59
150 151 7.872993 CGTATAATCCATGGACTCAACATTAGT 59.127 37.037 18.99 0.00 0.00 2.24
151 152 7.148573 GCGTATAATCCATGGACTCAACATTAG 60.149 40.741 18.99 3.22 0.00 1.73
152 153 6.649141 GCGTATAATCCATGGACTCAACATTA 59.351 38.462 18.99 10.35 0.00 1.90
153 154 5.470098 GCGTATAATCCATGGACTCAACATT 59.530 40.000 18.99 8.22 0.00 2.71
154 155 4.997395 GCGTATAATCCATGGACTCAACAT 59.003 41.667 18.99 6.69 0.00 2.71
155 156 4.141824 TGCGTATAATCCATGGACTCAACA 60.142 41.667 18.99 7.09 0.00 3.33
156 157 4.211374 GTGCGTATAATCCATGGACTCAAC 59.789 45.833 18.99 12.37 0.00 3.18
157 158 4.100963 AGTGCGTATAATCCATGGACTCAA 59.899 41.667 18.99 2.87 28.55 3.02
158 159 3.641436 AGTGCGTATAATCCATGGACTCA 59.359 43.478 18.99 5.31 28.55 3.41
159 160 4.258702 AGTGCGTATAATCCATGGACTC 57.741 45.455 18.99 3.38 28.55 3.36
160 161 4.689612 AAGTGCGTATAATCCATGGACT 57.310 40.909 18.99 9.32 35.38 3.85
161 162 5.057149 AGAAAGTGCGTATAATCCATGGAC 58.943 41.667 18.99 3.14 0.00 4.02
162 163 5.290493 AGAAAGTGCGTATAATCCATGGA 57.710 39.130 18.88 18.88 0.00 3.41
163 164 6.260936 AGAAAGAAAGTGCGTATAATCCATGG 59.739 38.462 4.97 4.97 0.00 3.66
164 165 7.251704 AGAAAGAAAGTGCGTATAATCCATG 57.748 36.000 0.00 0.00 0.00 3.66
165 166 7.770897 AGAAGAAAGAAAGTGCGTATAATCCAT 59.229 33.333 0.00 0.00 0.00 3.41
166 167 7.103641 AGAAGAAAGAAAGTGCGTATAATCCA 58.896 34.615 0.00 0.00 0.00 3.41
167 168 7.541122 AGAAGAAAGAAAGTGCGTATAATCC 57.459 36.000 0.00 0.00 0.00 3.01
168 169 8.541312 GGTAGAAGAAAGAAAGTGCGTATAATC 58.459 37.037 0.00 0.00 0.00 1.75
169 170 8.038944 TGGTAGAAGAAAGAAAGTGCGTATAAT 58.961 33.333 0.00 0.00 0.00 1.28
170 171 7.380536 TGGTAGAAGAAAGAAAGTGCGTATAA 58.619 34.615 0.00 0.00 0.00 0.98
171 172 6.927416 TGGTAGAAGAAAGAAAGTGCGTATA 58.073 36.000 0.00 0.00 0.00 1.47
172 173 5.790593 TGGTAGAAGAAAGAAAGTGCGTAT 58.209 37.500 0.00 0.00 0.00 3.06
173 174 5.204409 TGGTAGAAGAAAGAAAGTGCGTA 57.796 39.130 0.00 0.00 0.00 4.42
174 175 4.067972 TGGTAGAAGAAAGAAAGTGCGT 57.932 40.909 0.00 0.00 0.00 5.24
175 176 5.385617 CAATGGTAGAAGAAAGAAAGTGCG 58.614 41.667 0.00 0.00 0.00 5.34
176 177 5.048434 AGCAATGGTAGAAGAAAGAAAGTGC 60.048 40.000 0.00 0.00 0.00 4.40
177 178 6.566197 AGCAATGGTAGAAGAAAGAAAGTG 57.434 37.500 0.00 0.00 0.00 3.16
178 179 6.372937 GCTAGCAATGGTAGAAGAAAGAAAGT 59.627 38.462 22.04 0.00 35.90 2.66
179 180 6.597280 AGCTAGCAATGGTAGAAGAAAGAAAG 59.403 38.462 22.04 0.00 35.90 2.62
180 181 6.476378 AGCTAGCAATGGTAGAAGAAAGAAA 58.524 36.000 22.04 0.00 35.90 2.52
181 182 6.054860 AGCTAGCAATGGTAGAAGAAAGAA 57.945 37.500 22.04 0.00 35.90 2.52
182 183 5.683876 AGCTAGCAATGGTAGAAGAAAGA 57.316 39.130 22.04 0.00 35.90 2.52
183 184 6.112058 AGAAGCTAGCAATGGTAGAAGAAAG 58.888 40.000 22.04 0.00 35.90 2.62
184 185 6.054860 AGAAGCTAGCAATGGTAGAAGAAA 57.945 37.500 22.04 0.00 35.90 2.52
185 186 5.423610 AGAGAAGCTAGCAATGGTAGAAGAA 59.576 40.000 22.04 0.00 35.90 2.52
186 187 4.959210 AGAGAAGCTAGCAATGGTAGAAGA 59.041 41.667 22.04 0.00 35.90 2.87
187 188 5.275067 AGAGAAGCTAGCAATGGTAGAAG 57.725 43.478 22.04 0.00 35.90 2.85
188 189 6.791867 TTAGAGAAGCTAGCAATGGTAGAA 57.208 37.500 22.04 3.87 35.90 2.10
189 190 6.985653 ATTAGAGAAGCTAGCAATGGTAGA 57.014 37.500 22.04 0.06 35.90 2.59
190 191 7.700234 CGATATTAGAGAAGCTAGCAATGGTAG 59.300 40.741 18.83 14.54 36.79 3.18
191 192 7.539436 CGATATTAGAGAAGCTAGCAATGGTA 58.461 38.462 18.83 0.00 0.00 3.25
192 193 6.393990 CGATATTAGAGAAGCTAGCAATGGT 58.606 40.000 18.83 0.57 0.00 3.55
193 194 5.290643 GCGATATTAGAGAAGCTAGCAATGG 59.709 44.000 18.83 2.68 0.00 3.16
194 195 5.866092 TGCGATATTAGAGAAGCTAGCAATG 59.134 40.000 18.83 0.00 0.00 2.82
195 196 5.866633 GTGCGATATTAGAGAAGCTAGCAAT 59.133 40.000 18.83 9.12 30.20 3.56
196 197 5.221244 TGTGCGATATTAGAGAAGCTAGCAA 60.221 40.000 18.83 0.86 30.20 3.91
197 198 4.278419 TGTGCGATATTAGAGAAGCTAGCA 59.722 41.667 18.83 0.00 0.00 3.49
198 199 4.619336 GTGTGCGATATTAGAGAAGCTAGC 59.381 45.833 6.62 6.62 0.00 3.42
199 200 6.007936 AGTGTGCGATATTAGAGAAGCTAG 57.992 41.667 0.00 0.00 0.00 3.42
200 201 6.392625 AAGTGTGCGATATTAGAGAAGCTA 57.607 37.500 0.00 0.00 0.00 3.32
201 202 4.927978 AGTGTGCGATATTAGAGAAGCT 57.072 40.909 0.00 0.00 0.00 3.74
202 203 5.975410 AAAGTGTGCGATATTAGAGAAGC 57.025 39.130 0.00 0.00 0.00 3.86
203 204 6.631847 CGAAAAGTGTGCGATATTAGAGAAG 58.368 40.000 0.00 0.00 0.00 2.85
204 205 5.005394 GCGAAAAGTGTGCGATATTAGAGAA 59.995 40.000 0.00 0.00 0.00 2.87
205 206 4.503007 GCGAAAAGTGTGCGATATTAGAGA 59.497 41.667 0.00 0.00 0.00 3.10
206 207 4.318121 GGCGAAAAGTGTGCGATATTAGAG 60.318 45.833 0.00 0.00 0.00 2.43
207 208 3.554324 GGCGAAAAGTGTGCGATATTAGA 59.446 43.478 0.00 0.00 0.00 2.10
208 209 3.601586 CGGCGAAAAGTGTGCGATATTAG 60.602 47.826 0.00 0.00 0.00 1.73
209 210 2.283086 CGGCGAAAAGTGTGCGATATTA 59.717 45.455 0.00 0.00 0.00 0.98
210 211 1.062002 CGGCGAAAAGTGTGCGATATT 59.938 47.619 0.00 0.00 0.00 1.28
211 212 0.650512 CGGCGAAAAGTGTGCGATAT 59.349 50.000 0.00 0.00 0.00 1.63
212 213 1.355796 CCGGCGAAAAGTGTGCGATA 61.356 55.000 9.30 0.00 0.00 2.92
213 214 2.677003 CCGGCGAAAAGTGTGCGAT 61.677 57.895 9.30 0.00 0.00 4.58
214 215 2.696409 TACCGGCGAAAAGTGTGCGA 62.696 55.000 9.30 0.00 0.00 5.10
215 216 1.632046 ATACCGGCGAAAAGTGTGCG 61.632 55.000 9.30 0.00 0.00 5.34
216 217 1.061566 GTATACCGGCGAAAAGTGTGC 59.938 52.381 9.30 0.00 0.00 4.57
217 218 2.613691 AGTATACCGGCGAAAAGTGTG 58.386 47.619 9.30 0.00 0.00 3.82
218 219 4.082026 ACTTAGTATACCGGCGAAAAGTGT 60.082 41.667 9.30 0.00 0.00 3.55
219 220 4.266976 CACTTAGTATACCGGCGAAAAGTG 59.733 45.833 9.30 15.88 37.37 3.16
220 221 4.427312 CACTTAGTATACCGGCGAAAAGT 58.573 43.478 9.30 0.00 0.00 2.66
221 222 3.244579 GCACTTAGTATACCGGCGAAAAG 59.755 47.826 9.30 0.46 0.00 2.27
222 223 3.189285 GCACTTAGTATACCGGCGAAAA 58.811 45.455 9.30 0.00 0.00 2.29
223 224 2.166050 TGCACTTAGTATACCGGCGAAA 59.834 45.455 9.30 0.00 0.00 3.46
224 225 1.750206 TGCACTTAGTATACCGGCGAA 59.250 47.619 9.30 0.00 0.00 4.70
225 226 1.391577 TGCACTTAGTATACCGGCGA 58.608 50.000 9.30 0.00 0.00 5.54
226 227 2.058798 CATGCACTTAGTATACCGGCG 58.941 52.381 0.00 0.00 0.00 6.46
227 228 1.798813 GCATGCACTTAGTATACCGGC 59.201 52.381 14.21 0.00 0.00 6.13
228 229 3.059884 CTGCATGCACTTAGTATACCGG 58.940 50.000 18.46 0.00 0.00 5.28
229 230 3.717707 ACTGCATGCACTTAGTATACCG 58.282 45.455 18.46 4.87 0.00 4.02
230 231 5.597806 TGTACTGCATGCACTTAGTATACC 58.402 41.667 18.46 6.63 0.00 2.73
231 232 7.399523 GTTTGTACTGCATGCACTTAGTATAC 58.600 38.462 18.46 9.71 0.00 1.47
232 233 6.537301 GGTTTGTACTGCATGCACTTAGTATA 59.463 38.462 18.46 12.80 0.00 1.47
233 234 5.354234 GGTTTGTACTGCATGCACTTAGTAT 59.646 40.000 18.46 0.00 0.00 2.12
234 235 4.693566 GGTTTGTACTGCATGCACTTAGTA 59.306 41.667 18.46 14.66 0.00 1.82
235 236 3.502211 GGTTTGTACTGCATGCACTTAGT 59.498 43.478 18.46 15.76 0.00 2.24
236 237 3.501828 TGGTTTGTACTGCATGCACTTAG 59.498 43.478 18.46 9.91 0.00 2.18
237 238 3.481453 TGGTTTGTACTGCATGCACTTA 58.519 40.909 18.46 8.28 0.00 2.24
238 239 2.305928 TGGTTTGTACTGCATGCACTT 58.694 42.857 18.46 9.40 0.00 3.16
239 240 1.979855 TGGTTTGTACTGCATGCACT 58.020 45.000 18.46 10.93 0.00 4.40
240 241 2.228582 TGATGGTTTGTACTGCATGCAC 59.771 45.455 18.46 8.19 0.00 4.57
241 242 2.512705 TGATGGTTTGTACTGCATGCA 58.487 42.857 21.29 21.29 0.00 3.96
242 243 3.574284 TTGATGGTTTGTACTGCATGC 57.426 42.857 11.82 11.82 0.00 4.06
243 244 6.693978 CACATATTGATGGTTTGTACTGCATG 59.306 38.462 0.00 0.00 37.39 4.06
244 245 6.602803 TCACATATTGATGGTTTGTACTGCAT 59.397 34.615 0.00 0.00 37.39 3.96
245 246 5.942826 TCACATATTGATGGTTTGTACTGCA 59.057 36.000 0.00 0.00 37.39 4.41
246 247 6.128035 TGTCACATATTGATGGTTTGTACTGC 60.128 38.462 0.00 0.00 37.39 4.40
247 248 7.243487 GTGTCACATATTGATGGTTTGTACTG 58.757 38.462 0.00 0.00 37.39 2.74
248 249 6.092122 CGTGTCACATATTGATGGTTTGTACT 59.908 38.462 3.42 0.00 37.39 2.73
249 250 6.128391 ACGTGTCACATATTGATGGTTTGTAC 60.128 38.462 3.42 0.00 37.39 2.90
250 251 5.935206 ACGTGTCACATATTGATGGTTTGTA 59.065 36.000 3.42 0.00 37.39 2.41
251 252 4.759693 ACGTGTCACATATTGATGGTTTGT 59.240 37.500 3.42 0.00 37.39 2.83
252 253 5.295431 ACGTGTCACATATTGATGGTTTG 57.705 39.130 3.42 0.00 37.39 2.93
256 257 7.693020 TGATTTAACGTGTCACATATTGATGG 58.307 34.615 3.42 0.00 37.39 3.51
404 406 3.005554 CCACTGATGCTTAACTGGACAG 58.994 50.000 0.00 0.00 0.00 3.51
443 453 6.426328 GCCATTAGATGAAGAGACATTCGATT 59.574 38.462 0.00 0.00 31.52 3.34
464 474 0.112995 TTGGGAGAAAGTGCAGCCAT 59.887 50.000 0.00 0.00 0.00 4.40
570 581 2.802719 GGAAACCTTGCCCTCATACAA 58.197 47.619 0.00 0.00 0.00 2.41
595 606 7.026562 TCAGATGTTACAAAATTTACATGGCG 58.973 34.615 8.65 0.00 31.76 5.69
669 697 1.142748 GTGGAGGATGTGGAGAGCG 59.857 63.158 0.00 0.00 0.00 5.03
825 853 5.985530 CACTGTGTATGTTCACTCAGAAAGA 59.014 40.000 11.12 0.00 40.72 2.52
826 854 5.985530 TCACTGTGTATGTTCACTCAGAAAG 59.014 40.000 7.79 3.08 40.72 2.62
842 870 3.306780 GCCTACCTATGTGTTCACTGTGT 60.307 47.826 7.79 0.00 0.00 3.72
843 871 3.262420 GCCTACCTATGTGTTCACTGTG 58.738 50.000 0.17 0.17 0.00 3.66
930 964 2.170166 GTTTGGATGGAATGGACTGCA 58.830 47.619 0.00 0.00 0.00 4.41
1028 1071 2.304470 GAGGGGGAAGAGAGAATATGGC 59.696 54.545 0.00 0.00 0.00 4.40
1215 6883 2.675242 ATTGTCGGGATTGGCGGGA 61.675 57.895 0.00 0.00 0.00 5.14
1652 7329 0.966875 TTCAGCACATGCCACCATCC 60.967 55.000 0.00 0.00 43.38 3.51
2148 7829 6.151817 AGCCCTTCTTTGTTCATGTAAATCTC 59.848 38.462 0.00 0.00 0.00 2.75
2200 7884 6.350612 CCAAAACAAGAGGTTGGACTTTGTTA 60.351 38.462 1.86 0.00 43.82 2.41
2209 7893 3.447229 AGAACACCAAAACAAGAGGTTGG 59.553 43.478 0.16 0.16 46.05 3.77
2210 7894 4.718940 AGAACACCAAAACAAGAGGTTG 57.281 40.909 0.00 0.00 40.35 3.77
2211 7895 5.478407 CAAAGAACACCAAAACAAGAGGTT 58.522 37.500 0.00 0.00 42.98 3.50
2214 10772 3.865164 GGCAAAGAACACCAAAACAAGAG 59.135 43.478 0.00 0.00 0.00 2.85
2217 10775 3.971245 AGGCAAAGAACACCAAAACAA 57.029 38.095 0.00 0.00 0.00 2.83
2249 10807 7.927629 ACAAGACGTACTATAGAAAACAACCAA 59.072 33.333 6.78 0.00 0.00 3.67
2250 10808 7.436118 ACAAGACGTACTATAGAAAACAACCA 58.564 34.615 6.78 0.00 0.00 3.67
2268 10827 5.121611 TGATTAACTGGCATGTAACAAGACG 59.878 40.000 0.00 0.00 0.00 4.18
2272 10831 6.071447 AGCAATGATTAACTGGCATGTAACAA 60.071 34.615 0.00 0.00 0.00 2.83
2315 10887 8.743714 GGGAATTAAATTATCAGCTTCATAGGG 58.256 37.037 0.00 0.00 0.00 3.53
2316 10888 9.300681 TGGGAATTAAATTATCAGCTTCATAGG 57.699 33.333 0.00 0.00 0.00 2.57
2320 10892 9.651913 GTTTTGGGAATTAAATTATCAGCTTCA 57.348 29.630 0.00 0.00 0.00 3.02
2324 10896 7.011389 GCAGGTTTTGGGAATTAAATTATCAGC 59.989 37.037 0.00 0.00 0.00 4.26
2335 10907 4.837860 TCAACATAGCAGGTTTTGGGAATT 59.162 37.500 0.00 0.00 0.00 2.17
2341 10913 5.531634 ACAACATCAACATAGCAGGTTTTG 58.468 37.500 0.00 0.00 0.00 2.44
2342 10914 5.301551 TGACAACATCAACATAGCAGGTTTT 59.698 36.000 0.00 0.00 33.02 2.43
2345 10918 3.753272 GTGACAACATCAACATAGCAGGT 59.247 43.478 0.00 0.00 39.72 4.00
2350 10927 7.099764 AGTAAGGAGTGACAACATCAACATAG 58.900 38.462 0.00 0.00 39.72 2.23
2367 10944 7.745620 GAGATCTTCTCTAAGGAGTAAGGAG 57.254 44.000 0.00 0.00 40.30 3.69
2398 10975 9.911788 AACACAAATATATCCATGAACTTCTCT 57.088 29.630 0.00 0.00 0.00 3.10
2489 11068 3.565307 TGCTTTCTGGTTTCCTGAATGT 58.435 40.909 16.26 0.00 40.26 2.71
2496 11075 4.655762 ACTCTTTTGCTTTCTGGTTTCC 57.344 40.909 0.00 0.00 0.00 3.13
2538 11117 8.969260 AAAGCAGATCATACTGATATGTTTCA 57.031 30.769 12.19 0.00 44.63 2.69
2543 11122 7.465173 GCATGAAAGCAGATCATACTGATATG 58.535 38.462 0.00 7.25 45.90 1.78
2544 11123 6.313164 CGCATGAAAGCAGATCATACTGATAT 59.687 38.462 0.00 0.00 37.20 1.63
2730 11330 5.550290 TCACAAATGCAGTCACTGAATAGA 58.450 37.500 9.70 0.00 28.08 1.98
2742 11342 3.034721 ACAATGGCTTCACAAATGCAG 57.965 42.857 0.00 0.00 0.00 4.41
2748 11348 5.988561 GGTATTTTGAACAATGGCTTCACAA 59.011 36.000 0.00 0.00 0.00 3.33
2755 11355 6.799926 AAATGTGGTATTTTGAACAATGGC 57.200 33.333 0.00 0.00 0.00 4.40
2765 11365 9.950496 TGGCAAAACATATAAATGTGGTATTTT 57.050 25.926 0.00 0.00 45.79 1.82
2769 11369 8.298729 TGATGGCAAAACATATAAATGTGGTA 57.701 30.769 0.00 0.00 45.79 3.25
2789 11389 5.047802 ACTTCACATTGGCTAGTTTTGATGG 60.048 40.000 0.00 0.00 0.00 3.51
2792 11392 4.213270 CGACTTCACATTGGCTAGTTTTGA 59.787 41.667 0.00 0.00 0.00 2.69
2803 11403 1.068402 TGGCATTGCGACTTCACATTG 60.068 47.619 1.91 0.00 0.00 2.82
2829 11429 5.119125 GCTCAAAGCAACAAATTTCGCTAAT 59.881 36.000 6.69 0.00 41.89 1.73
2831 11431 3.980775 GCTCAAAGCAACAAATTTCGCTA 59.019 39.130 6.69 0.00 41.89 4.26
2833 11433 2.796593 AGCTCAAAGCAACAAATTTCGC 59.203 40.909 1.29 0.00 45.56 4.70
2835 11435 4.446719 CCTCAGCTCAAAGCAACAAATTTC 59.553 41.667 1.29 0.00 45.56 2.17
2836 11436 4.141869 ACCTCAGCTCAAAGCAACAAATTT 60.142 37.500 1.29 0.00 45.56 1.82
2840 11440 2.057137 ACCTCAGCTCAAAGCAACAA 57.943 45.000 1.29 0.00 45.56 2.83
2858 11458 1.860676 TGCTGTGTGACGACCTTTAC 58.139 50.000 0.00 0.00 0.00 2.01
2861 11461 1.202639 TCATTGCTGTGTGACGACCTT 60.203 47.619 0.00 0.00 0.00 3.50
2867 11467 3.058639 GGAAGTTCTCATTGCTGTGTGAC 60.059 47.826 2.25 0.00 0.00 3.67
2869 11469 2.880268 TGGAAGTTCTCATTGCTGTGTG 59.120 45.455 2.25 0.00 0.00 3.82
2875 11475 1.909700 TGGGTGGAAGTTCTCATTGC 58.090 50.000 2.25 0.00 0.00 3.56
2878 11478 3.053619 GGGTAATGGGTGGAAGTTCTCAT 60.054 47.826 2.25 0.14 0.00 2.90
2884 11484 2.926329 AGAATGGGTAATGGGTGGAAGT 59.074 45.455 0.00 0.00 0.00 3.01
2893 11493 7.975616 CCACTTTTTATGTCAGAATGGGTAATG 59.024 37.037 0.00 0.00 36.16 1.90
2894 11494 7.363793 GCCACTTTTTATGTCAGAATGGGTAAT 60.364 37.037 0.96 0.00 36.16 1.89
2897 11497 4.220602 GCCACTTTTTATGTCAGAATGGGT 59.779 41.667 0.96 0.00 36.16 4.51
2898 11498 4.220382 TGCCACTTTTTATGTCAGAATGGG 59.780 41.667 0.96 0.00 36.16 4.00
2956 11561 5.003804 CCCTGTTACTCATTAAACACAGCT 58.996 41.667 0.00 0.00 32.43 4.24
3036 11656 4.771590 TGGCTGTGATCTTTCATGTTTC 57.228 40.909 0.00 0.00 33.56 2.78
3038 11658 5.733620 AAATGGCTGTGATCTTTCATGTT 57.266 34.783 0.00 0.00 33.56 2.71
3089 11709 9.691362 CCAGCTTTTACACAATACAACTAATTT 57.309 29.630 0.00 0.00 0.00 1.82
3095 11715 5.699097 TCCCAGCTTTTACACAATACAAC 57.301 39.130 0.00 0.00 0.00 3.32
3115 11735 1.214589 CAGCTGCAGTTGCCATTCC 59.785 57.895 18.01 0.00 41.18 3.01
3116 11736 0.815734 ATCAGCTGCAGTTGCCATTC 59.184 50.000 24.28 0.46 41.18 2.67


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.