Multiple sequence alignment - TraesCS6D01G032200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G032200 chr6D 100.000 2709 0 0 1 2709 13586383 13589091 0.000000e+00 5003.0
1 TraesCS6D01G032200 chr6D 100.000 2525 0 0 2995 5519 13589377 13591901 0.000000e+00 4663.0
2 TraesCS6D01G032200 chr6D 100.000 382 0 0 5768 6149 13592150 13592531 0.000000e+00 706.0
3 TraesCS6D01G032200 chr6D 88.296 487 36 13 1087 1561 225837843 225837366 1.160000e-156 564.0
4 TraesCS6D01G032200 chr6D 100.000 92 0 0 2558 2649 13588876 13588967 2.950000e-38 171.0
5 TraesCS6D01G032200 chr6D 100.000 92 0 0 2494 2585 13588940 13589031 2.950000e-38 171.0
6 TraesCS6D01G032200 chr6D 100.000 28 0 0 2622 2649 13588876 13588903 1.100000e-02 52.8
7 TraesCS6D01G032200 chr6D 100.000 28 0 0 2494 2521 13589004 13589031 1.100000e-02 52.8
8 TraesCS6D01G032200 chrUn 95.467 2515 90 14 3011 5515 71317801 71315301 0.000000e+00 3991.0
9 TraesCS6D01G032200 chrUn 95.255 1665 63 8 907 2558 71319519 71317858 0.000000e+00 2623.0
10 TraesCS6D01G032200 chrUn 94.536 366 17 2 5786 6149 71314894 71314530 4.160000e-156 562.0
11 TraesCS6D01G032200 chrUn 95.312 64 3 0 2559 2622 71317921 71317858 1.090000e-17 102.0
12 TraesCS6D01G032200 chrUn 83.516 91 9 5 630 719 108611283 108611198 5.110000e-11 80.5
13 TraesCS6D01G032200 chr6B 93.436 2529 115 22 3011 5519 25244760 25247257 0.000000e+00 3703.0
14 TraesCS6D01G032200 chr6B 94.859 1206 52 7 1360 2558 25243501 25244703 0.000000e+00 1875.0
15 TraesCS6D01G032200 chr6B 97.245 363 10 0 5787 6149 25247336 25247698 3.150000e-172 616.0
16 TraesCS6D01G032200 chr6B 91.337 404 28 3 907 1303 25243078 25243481 4.190000e-151 545.0
17 TraesCS6D01G032200 chr6B 90.500 400 33 4 29 427 25241098 25241493 1.960000e-144 523.0
18 TraesCS6D01G032200 chr6B 95.312 64 3 0 2559 2622 25244640 25244703 1.090000e-17 102.0
19 TraesCS6D01G032200 chr6B 86.747 83 8 3 644 725 515716450 515716530 8.490000e-14 89.8
20 TraesCS6D01G032200 chr5B 91.473 1935 103 33 2995 4901 492582775 492584675 0.000000e+00 2603.0
21 TraesCS6D01G032200 chr5B 89.510 1611 141 19 946 2541 492581035 492582632 0.000000e+00 2013.0
22 TraesCS6D01G032200 chr5B 86.189 1354 151 22 1218 2552 492612278 492613614 0.000000e+00 1432.0
23 TraesCS6D01G032200 chr5B 83.333 984 135 18 1087 2052 618491231 618490259 0.000000e+00 881.0
24 TraesCS6D01G032200 chr5B 94.118 323 16 2 4896 5215 492584921 492585243 7.160000e-134 488.0
25 TraesCS6D01G032200 chr5B 91.064 235 17 4 5214 5448 492585326 492585556 1.290000e-81 315.0
26 TraesCS6D01G032200 chr5B 88.356 146 10 3 5811 5955 492585576 492585715 1.060000e-37 169.0
27 TraesCS6D01G032200 chr5B 79.268 246 46 5 196 438 504682586 504682829 3.810000e-37 167.0
28 TraesCS6D01G032200 chr5B 81.579 152 7 8 2558 2709 492582585 492582715 8.430000e-19 106.0
29 TraesCS6D01G032200 chr5B 90.909 77 7 0 6073 6149 492586123 492586199 3.030000e-18 104.0
30 TraesCS6D01G032200 chr5B 98.039 51 1 0 2566 2616 492613564 492613614 8.490000e-14 89.8
31 TraesCS6D01G032200 chr5B 83.871 93 12 3 634 725 410597315 410597405 1.100000e-12 86.1
32 TraesCS6D01G032200 chr5B 100.000 28 0 0 2622 2649 492582585 492582612 1.100000e-02 52.8
33 TraesCS6D01G032200 chr4D 84.004 1019 139 13 1052 2052 68095754 68094742 0.000000e+00 957.0
34 TraesCS6D01G032200 chr4D 78.635 337 62 8 117 450 483963757 483963428 1.340000e-51 215.0
35 TraesCS6D01G032200 chr2A 85.797 521 58 10 1052 1561 379361305 379360790 7.010000e-149 538.0
36 TraesCS6D01G032200 chr2A 74.706 170 28 13 559 718 68331127 68331291 1.850000e-05 62.1
37 TraesCS6D01G032200 chr2D 82.192 511 82 7 1532 2039 360878244 360877740 1.220000e-116 431.0
38 TraesCS6D01G032200 chr2D 82.171 516 78 12 1532 2039 570258832 570259341 1.220000e-116 431.0
39 TraesCS6D01G032200 chr7A 85.185 405 46 7 1049 1442 680718110 680718511 2.670000e-108 403.0
40 TraesCS6D01G032200 chr7A 83.168 202 25 8 133 326 126684172 126683972 6.330000e-40 176.0
41 TraesCS6D01G032200 chr7A 77.778 126 18 8 596 717 172921181 172921300 1.110000e-07 69.4
42 TraesCS6D01G032200 chr7A 76.282 156 20 12 581 729 84382003 84382148 3.980000e-07 67.6
43 TraesCS6D01G032200 chr6A 95.732 164 7 0 1551 1714 564002961 564003124 1.310000e-66 265.0
44 TraesCS6D01G032200 chr6A 86.441 59 6 1 553 609 555816193 555816135 5.150000e-06 63.9
45 TraesCS6D01G032200 chr3A 95.732 164 7 0 1551 1714 23810643 23810806 1.310000e-66 265.0
46 TraesCS6D01G032200 chr3A 82.609 138 16 7 276 409 525395 525528 1.400000e-21 115.0
47 TraesCS6D01G032200 chr3A 84.615 65 5 3 595 655 719767359 719767296 6.660000e-05 60.2
48 TraesCS6D01G032200 chr1A 94.512 164 9 0 1551 1714 491735048 491735211 2.840000e-63 254.0
49 TraesCS6D01G032200 chr1A 78.136 279 43 17 252 522 62017176 62017444 1.770000e-35 161.0
50 TraesCS6D01G032200 chr1A 79.518 249 29 13 26 262 576560594 576560832 2.290000e-34 158.0
51 TraesCS6D01G032200 chr7B 82.528 269 40 7 185 450 485042475 485042211 4.790000e-56 230.0
52 TraesCS6D01G032200 chr3B 85.207 169 23 2 199 365 304973552 304973384 8.190000e-39 172.0
53 TraesCS6D01G032200 chr3B 76.119 201 39 7 282 476 175747558 175747361 5.070000e-16 97.1
54 TraesCS6D01G032200 chr4A 78.082 292 44 15 395 675 78782782 78783064 3.810000e-37 167.0
55 TraesCS6D01G032200 chr4A 78.884 251 32 13 414 652 78782662 78782903 3.840000e-32 150.0
56 TraesCS6D01G032200 chr4A 73.890 383 72 21 153 515 78782662 78783036 1.800000e-25 128.0
57 TraesCS6D01G032200 chr4A 77.679 112 15 5 26 134 676416976 676417080 6.660000e-05 60.2
58 TraesCS6D01G032200 chr1D 78.764 259 46 8 122 373 255060696 255060440 1.370000e-36 165.0
59 TraesCS6D01G032200 chr1D 74.163 418 70 24 17 409 45493587 45493991 8.310000e-29 139.0
60 TraesCS6D01G032200 chr5A 82.286 175 24 6 195 367 436635328 436635497 1.790000e-30 145.0
61 TraesCS6D01G032200 chr5A 78.307 189 24 13 294 473 504785398 504785218 8.430000e-19 106.0
62 TraesCS6D01G032200 chr5A 76.543 162 25 7 553 704 211640650 211640492 6.610000e-10 76.8
63 TraesCS6D01G032200 chr5A 92.308 39 1 2 624 661 703187076 703187039 3.000000e-03 54.7
64 TraesCS6D01G032200 chr4B 81.065 169 27 5 45 212 480650746 480650910 5.000000e-26 130.0
65 TraesCS6D01G032200 chr4B 78.676 136 19 8 601 731 494690904 494691034 1.420000e-11 82.4
66 TraesCS6D01G032200 chr1B 73.699 365 73 21 123 476 684806853 684807205 3.010000e-23 121.0
67 TraesCS6D01G032200 chr1B 77.348 181 28 8 555 725 638793861 638794038 1.820000e-15 95.3
68 TraesCS6D01G032200 chr2B 78.537 205 27 12 333 528 483514576 483514380 1.080000e-22 119.0
69 TraesCS6D01G032200 chr2B 75.943 212 29 14 696 893 26332944 26333147 8.490000e-14 89.8
70 TraesCS6D01G032200 chr2B 100.000 28 0 0 122 149 595119397 595119424 1.100000e-02 52.8
71 TraesCS6D01G032200 chr3D 84.416 77 8 3 643 719 26077679 26077607 8.550000e-09 73.1
72 TraesCS6D01G032200 chr5D 100.000 28 0 0 595 622 10474329 10474356 1.100000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G032200 chr6D 13586383 13592531 6148 False 1545.657143 5003 100.000000 1 6149 7 chr6D.!!$F1 6148
1 TraesCS6D01G032200 chrUn 71314530 71319519 4989 True 1819.500000 3991 95.142500 907 6149 4 chrUn.!!$R2 5242
2 TraesCS6D01G032200 chr6B 25241098 25247698 6600 False 1227.333333 3703 93.781500 29 6149 6 chr6B.!!$F2 6120
3 TraesCS6D01G032200 chr5B 618490259 618491231 972 True 881.000000 881 83.333000 1087 2052 1 chr5B.!!$R1 965
4 TraesCS6D01G032200 chr5B 492612278 492613614 1336 False 760.900000 1432 92.114000 1218 2616 2 chr5B.!!$F4 1398
5 TraesCS6D01G032200 chr5B 492581035 492586199 5164 False 731.350000 2603 90.876125 946 6149 8 chr5B.!!$F3 5203
6 TraesCS6D01G032200 chr4D 68094742 68095754 1012 True 957.000000 957 84.004000 1052 2052 1 chr4D.!!$R1 1000
7 TraesCS6D01G032200 chr2A 379360790 379361305 515 True 538.000000 538 85.797000 1052 1561 1 chr2A.!!$R1 509
8 TraesCS6D01G032200 chr2D 360877740 360878244 504 True 431.000000 431 82.192000 1532 2039 1 chr2D.!!$R1 507
9 TraesCS6D01G032200 chr2D 570258832 570259341 509 False 431.000000 431 82.171000 1532 2039 1 chr2D.!!$F1 507

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
919 2064 0.404040 TGGCCAATCCTTCGTTTCCT 59.596 50.000 0.61 0.00 35.26 3.36 F
2181 3377 0.035152 CAGTTACCTGCTGGATGGCA 60.035 55.000 17.64 0.00 40.15 4.92 F
2661 3857 4.706962 AGGTCATTCCTTTTGTATGCCTTC 59.293 41.667 0.00 0.00 45.67 3.46 F
3045 4242 2.504175 AGGTGCAATGTTCGTAGGGTAT 59.496 45.455 0.00 0.00 0.00 2.73 F
4823 6052 0.819259 TGCTTCCAAGTGGTGAGCAC 60.819 55.000 19.91 6.68 44.21 4.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2358 3554 2.334977 TGAGGACTTTGGTAGCTGGAA 58.665 47.619 0.00 0.0 0.00 3.53 R
3008 4204 1.533033 CCTCCCACCCACCCAAAAC 60.533 63.158 0.00 0.0 0.00 2.43 R
4491 5713 2.689983 CTGCCTTCCTTTCAAGTTGTGT 59.310 45.455 2.11 0.0 0.00 3.72 R
4830 6059 1.490490 ACTGGACTGTTCTCTTTGGCA 59.510 47.619 0.00 0.0 0.00 4.92 R
5873 7578 0.793861 CAGCATGCCATTTGTTGCAC 59.206 50.000 15.66 0.0 40.88 4.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
66 67 9.255304 CCATATTAACAATTTTTGAATACCCGG 57.745 33.333 0.00 0.00 0.00 5.73
423 425 9.462174 TCAACATCTTTTGAATACATTGTCAAC 57.538 29.630 0.00 0.00 33.58 3.18
424 426 9.247126 CAACATCTTTTGAATACATTGTCAACA 57.753 29.630 0.00 0.00 33.58 3.33
425 427 9.985730 AACATCTTTTGAATACATTGTCAACAT 57.014 25.926 0.00 0.00 33.58 2.71
426 428 9.985730 ACATCTTTTGAATACATTGTCAACATT 57.014 25.926 0.00 0.00 33.58 2.71
457 459 9.769093 GTATACATATTTAACATTTCCGGATGC 57.231 33.333 4.15 0.00 0.00 3.91
458 460 6.959639 ACATATTTAACATTTCCGGATGCT 57.040 33.333 4.15 0.00 0.00 3.79
459 461 7.346751 ACATATTTAACATTTCCGGATGCTT 57.653 32.000 4.15 1.79 0.00 3.91
460 462 7.202526 ACATATTTAACATTTCCGGATGCTTG 58.797 34.615 4.15 3.31 0.00 4.01
466 468 5.248870 ACATTTCCGGATGCTTGATTAAC 57.751 39.130 4.15 0.00 0.00 2.01
468 470 5.360714 ACATTTCCGGATGCTTGATTAACAT 59.639 36.000 4.15 0.00 0.00 2.71
567 569 8.260114 TCATCAGTGTTAGTACATGATCAACAT 58.740 33.333 0.00 0.00 40.17 2.71
614 618 9.947669 TTTTTGGATGCTTGATTAACATTTTTG 57.052 25.926 0.00 0.00 0.00 2.44
850 860 3.070018 AGAAAAAGACTCTGTGGCATCG 58.930 45.455 0.00 0.00 0.00 3.84
883 893 2.525381 CCCATCTCGCTAGCCCCT 60.525 66.667 9.66 0.00 0.00 4.79
896 906 1.078143 GCCCCTTTCAGCGAGTCAT 60.078 57.895 0.00 0.00 0.00 3.06
900 910 2.093447 CCCCTTTCAGCGAGTCATAACT 60.093 50.000 0.00 0.00 38.88 2.24
901 911 2.932614 CCCTTTCAGCGAGTCATAACTG 59.067 50.000 0.00 0.00 35.28 3.16
902 912 2.932614 CCTTTCAGCGAGTCATAACTGG 59.067 50.000 0.00 0.00 35.28 4.00
919 2064 0.404040 TGGCCAATCCTTCGTTTCCT 59.596 50.000 0.61 0.00 35.26 3.36
921 2066 1.202348 GGCCAATCCTTCGTTTCCTTG 59.798 52.381 0.00 0.00 0.00 3.61
960 2108 2.003548 ACCAATCCCCTCCTCTGCC 61.004 63.158 0.00 0.00 0.00 4.85
1066 2214 0.397957 GGAAGAGGGAGGAGGAGACC 60.398 65.000 0.00 0.00 0.00 3.85
1311 2477 2.494918 GGATCGGACGACCCTGTG 59.505 66.667 0.00 0.00 0.00 3.66
1330 2496 3.777925 CCGTTCAACAGCGCGAGG 61.778 66.667 12.10 2.26 0.00 4.63
1394 2567 3.181503 CCTGAAGTTTCGATGCTGGATTG 60.182 47.826 0.00 0.00 0.00 2.67
1395 2568 2.162208 TGAAGTTTCGATGCTGGATTGC 59.838 45.455 0.00 0.00 0.00 3.56
1402 2575 1.379977 ATGCTGGATTGCTGCTGCT 60.380 52.632 17.00 0.00 38.28 4.24
1420 2593 1.736696 GCTGCGTTGGATGATTTTGGG 60.737 52.381 0.00 0.00 0.00 4.12
1826 3014 1.601903 TGCAAATGTCGTCCAGAACAC 59.398 47.619 0.00 0.00 0.00 3.32
2181 3377 0.035152 CAGTTACCTGCTGGATGGCA 60.035 55.000 17.64 0.00 40.15 4.92
2558 3754 9.539825 AGTCATCATTAAACTCATGTCATACTC 57.460 33.333 0.00 0.00 0.00 2.59
2560 3756 8.413229 TCATCATTAAACTCATGTCATACTCGA 58.587 33.333 0.00 0.00 0.00 4.04
2562 3758 9.770097 ATCATTAAACTCATGTCATACTCGATT 57.230 29.630 0.00 0.00 0.00 3.34
2563 3759 9.599866 TCATTAAACTCATGTCATACTCGATTT 57.400 29.630 0.00 0.00 0.00 2.17
2564 3760 9.855361 CATTAAACTCATGTCATACTCGATTTC 57.145 33.333 0.00 0.00 0.00 2.17
2565 3761 9.823647 ATTAAACTCATGTCATACTCGATTTCT 57.176 29.630 0.00 0.00 0.00 2.52
2566 3762 7.531280 AAACTCATGTCATACTCGATTTCTG 57.469 36.000 0.00 0.00 0.00 3.02
2567 3763 6.214191 ACTCATGTCATACTCGATTTCTGT 57.786 37.500 0.00 0.00 0.00 3.41
2568 3764 6.634805 ACTCATGTCATACTCGATTTCTGTT 58.365 36.000 0.00 0.00 0.00 3.16
2569 3765 7.099764 ACTCATGTCATACTCGATTTCTGTTT 58.900 34.615 0.00 0.00 0.00 2.83
2570 3766 7.276658 ACTCATGTCATACTCGATTTCTGTTTC 59.723 37.037 0.00 0.00 0.00 2.78
2571 3767 7.323420 TCATGTCATACTCGATTTCTGTTTCT 58.677 34.615 0.00 0.00 0.00 2.52
2572 3768 7.819415 TCATGTCATACTCGATTTCTGTTTCTT 59.181 33.333 0.00 0.00 0.00 2.52
2573 3769 7.351414 TGTCATACTCGATTTCTGTTTCTTG 57.649 36.000 0.00 0.00 0.00 3.02
2574 3770 7.151976 TGTCATACTCGATTTCTGTTTCTTGA 58.848 34.615 0.00 0.00 0.00 3.02
2575 3771 7.329471 TGTCATACTCGATTTCTGTTTCTTGAG 59.671 37.037 0.00 0.00 0.00 3.02
2576 3772 6.813649 TCATACTCGATTTCTGTTTCTTGAGG 59.186 38.462 0.00 0.00 0.00 3.86
2577 3773 4.962155 ACTCGATTTCTGTTTCTTGAGGT 58.038 39.130 0.00 0.00 0.00 3.85
2578 3774 4.991687 ACTCGATTTCTGTTTCTTGAGGTC 59.008 41.667 0.00 0.00 0.00 3.85
2579 3775 4.956085 TCGATTTCTGTTTCTTGAGGTCA 58.044 39.130 0.00 0.00 0.00 4.02
2580 3776 5.551233 TCGATTTCTGTTTCTTGAGGTCAT 58.449 37.500 0.00 0.00 0.00 3.06
2581 3777 5.997746 TCGATTTCTGTTTCTTGAGGTCATT 59.002 36.000 0.00 0.00 0.00 2.57
2582 3778 6.147821 TCGATTTCTGTTTCTTGAGGTCATTC 59.852 38.462 0.00 0.00 0.00 2.67
2583 3779 6.581171 ATTTCTGTTTCTTGAGGTCATTCC 57.419 37.500 0.00 0.00 0.00 3.01
2595 3791 4.901785 AGGTCATTCCTCTAGGGTAAGA 57.098 45.455 0.00 0.00 44.42 2.10
2596 3792 5.222278 AGGTCATTCCTCTAGGGTAAGAA 57.778 43.478 0.00 0.00 44.42 2.52
2597 3793 5.212745 AGGTCATTCCTCTAGGGTAAGAAG 58.787 45.833 0.00 0.00 44.42 2.85
2598 3794 4.963628 GGTCATTCCTCTAGGGTAAGAAGT 59.036 45.833 0.00 0.00 36.25 3.01
2599 3795 5.069383 GGTCATTCCTCTAGGGTAAGAAGTC 59.931 48.000 0.00 0.00 36.25 3.01
2600 3796 5.657302 GTCATTCCTCTAGGGTAAGAAGTCA 59.343 44.000 0.00 0.00 36.25 3.41
2601 3797 6.325286 GTCATTCCTCTAGGGTAAGAAGTCAT 59.675 42.308 0.00 0.00 36.25 3.06
2602 3798 6.551601 TCATTCCTCTAGGGTAAGAAGTCATC 59.448 42.308 0.00 0.00 36.25 2.92
2603 3799 5.467668 TCCTCTAGGGTAAGAAGTCATCA 57.532 43.478 0.00 0.00 36.25 3.07
2604 3800 6.031964 TCCTCTAGGGTAAGAAGTCATCAT 57.968 41.667 0.00 0.00 36.25 2.45
2605 3801 6.444704 TCCTCTAGGGTAAGAAGTCATCATT 58.555 40.000 0.00 0.00 36.25 2.57
2606 3802 7.592736 TCCTCTAGGGTAAGAAGTCATCATTA 58.407 38.462 0.00 0.00 36.25 1.90
2607 3803 8.065627 TCCTCTAGGGTAAGAAGTCATCATTAA 58.934 37.037 0.00 0.00 36.25 1.40
2608 3804 8.705594 CCTCTAGGGTAAGAAGTCATCATTAAA 58.294 37.037 0.00 0.00 0.00 1.52
2609 3805 9.535878 CTCTAGGGTAAGAAGTCATCATTAAAC 57.464 37.037 0.00 0.00 0.00 2.01
2610 3806 9.268282 TCTAGGGTAAGAAGTCATCATTAAACT 57.732 33.333 0.00 0.00 0.00 2.66
2611 3807 9.535878 CTAGGGTAAGAAGTCATCATTAAACTC 57.464 37.037 0.00 0.00 0.00 3.01
2612 3808 7.918076 AGGGTAAGAAGTCATCATTAAACTCA 58.082 34.615 0.00 0.00 0.00 3.41
2613 3809 8.552296 AGGGTAAGAAGTCATCATTAAACTCAT 58.448 33.333 0.00 0.00 0.00 2.90
2614 3810 8.616076 GGGTAAGAAGTCATCATTAAACTCATG 58.384 37.037 0.00 0.00 0.00 3.07
2615 3811 9.167311 GGTAAGAAGTCATCATTAAACTCATGT 57.833 33.333 0.00 0.00 0.00 3.21
2617 3813 8.853077 AAGAAGTCATCATTAAACTCATGTCA 57.147 30.769 0.00 0.00 0.00 3.58
2618 3814 9.458727 AAGAAGTCATCATTAAACTCATGTCAT 57.541 29.630 0.00 0.00 0.00 3.06
2621 3817 9.896645 AAGTCATCATTAAACTCATGTCATACT 57.103 29.630 0.00 0.00 0.00 2.12
2622 3818 9.539825 AGTCATCATTAAACTCATGTCATACTC 57.460 33.333 0.00 0.00 0.00 2.59
2623 3819 8.483218 GTCATCATTAAACTCATGTCATACTCG 58.517 37.037 0.00 0.00 0.00 4.18
2624 3820 8.413229 TCATCATTAAACTCATGTCATACTCGA 58.587 33.333 0.00 0.00 0.00 4.04
2625 3821 9.201127 CATCATTAAACTCATGTCATACTCGAT 57.799 33.333 0.00 0.00 0.00 3.59
2626 3822 9.770097 ATCATTAAACTCATGTCATACTCGATT 57.230 29.630 0.00 0.00 0.00 3.34
2627 3823 9.599866 TCATTAAACTCATGTCATACTCGATTT 57.400 29.630 0.00 0.00 0.00 2.17
2628 3824 9.855361 CATTAAACTCATGTCATACTCGATTTC 57.145 33.333 0.00 0.00 0.00 2.17
2629 3825 9.823647 ATTAAACTCATGTCATACTCGATTTCT 57.176 29.630 0.00 0.00 0.00 2.52
2630 3826 7.531280 AAACTCATGTCATACTCGATTTCTG 57.469 36.000 0.00 0.00 0.00 3.02
2631 3827 6.214191 ACTCATGTCATACTCGATTTCTGT 57.786 37.500 0.00 0.00 0.00 3.41
2632 3828 6.634805 ACTCATGTCATACTCGATTTCTGTT 58.365 36.000 0.00 0.00 0.00 3.16
2633 3829 7.099764 ACTCATGTCATACTCGATTTCTGTTT 58.900 34.615 0.00 0.00 0.00 2.83
2634 3830 7.276658 ACTCATGTCATACTCGATTTCTGTTTC 59.723 37.037 0.00 0.00 0.00 2.78
2635 3831 7.323420 TCATGTCATACTCGATTTCTGTTTCT 58.677 34.615 0.00 0.00 0.00 2.52
2636 3832 7.819415 TCATGTCATACTCGATTTCTGTTTCTT 59.181 33.333 0.00 0.00 0.00 2.52
2637 3833 7.351414 TGTCATACTCGATTTCTGTTTCTTG 57.649 36.000 0.00 0.00 0.00 3.02
2638 3834 7.151976 TGTCATACTCGATTTCTGTTTCTTGA 58.848 34.615 0.00 0.00 0.00 3.02
2639 3835 7.329471 TGTCATACTCGATTTCTGTTTCTTGAG 59.671 37.037 0.00 0.00 0.00 3.02
2640 3836 6.813649 TCATACTCGATTTCTGTTTCTTGAGG 59.186 38.462 0.00 0.00 0.00 3.86
2641 3837 4.962155 ACTCGATTTCTGTTTCTTGAGGT 58.038 39.130 0.00 0.00 0.00 3.85
2642 3838 4.991687 ACTCGATTTCTGTTTCTTGAGGTC 59.008 41.667 0.00 0.00 0.00 3.85
2643 3839 4.956085 TCGATTTCTGTTTCTTGAGGTCA 58.044 39.130 0.00 0.00 0.00 4.02
2644 3840 5.551233 TCGATTTCTGTTTCTTGAGGTCAT 58.449 37.500 0.00 0.00 0.00 3.06
2661 3857 4.706962 AGGTCATTCCTTTTGTATGCCTTC 59.293 41.667 0.00 0.00 45.67 3.46
3045 4242 2.504175 AGGTGCAATGTTCGTAGGGTAT 59.496 45.455 0.00 0.00 0.00 2.73
3092 4290 8.488764 GTCAGAGTTGTAAGATGAAGTTGTAAC 58.511 37.037 0.00 0.00 0.00 2.50
3095 4293 9.391006 AGAGTTGTAAGATGAAGTTGTAACAAA 57.609 29.630 0.00 0.00 0.00 2.83
3452 4658 2.616510 CGAGAATGGAGGCTTTCAGGTT 60.617 50.000 0.00 0.00 0.00 3.50
3512 4718 4.957296 ACACAAAGAGTTCAGGTATTCGT 58.043 39.130 0.00 0.00 0.00 3.85
3558 4766 8.893727 CCGTTCTTGGAATCAACTAATATCTTT 58.106 33.333 0.00 0.00 0.00 2.52
3877 5088 9.349713 ACTTGTTCTATGGAATACTTTGTTTCA 57.650 29.630 0.00 0.00 33.71 2.69
3911 5122 9.672673 CTCTGATTAGTTTTCCTTTCCAAGATA 57.327 33.333 0.00 0.00 0.00 1.98
4433 5650 7.598869 CCTTAGTAACAATGCCCTTTTCTTTTC 59.401 37.037 0.00 0.00 0.00 2.29
4465 5687 7.621013 GCAAATGCTCATTTTTGTTTACGCATA 60.621 33.333 5.19 0.00 38.84 3.14
4473 5695 3.715618 TTGTTTACGCATAAGCAGTCG 57.284 42.857 0.00 0.00 42.27 4.18
4477 5699 4.032445 TGTTTACGCATAAGCAGTCGAATC 59.968 41.667 0.00 0.00 42.27 2.52
4479 5701 2.616960 ACGCATAAGCAGTCGAATCAA 58.383 42.857 0.00 0.00 42.27 2.57
4481 5703 3.062639 ACGCATAAGCAGTCGAATCAAAG 59.937 43.478 0.00 0.00 42.27 2.77
4491 5713 5.390885 GCAGTCGAATCAAAGTCATAGCAAA 60.391 40.000 0.00 0.00 0.00 3.68
4525 5747 1.455383 AAGGCAGGCAAAGAACCGTG 61.455 55.000 0.00 0.00 0.00 4.94
4593 5822 5.702266 TCTACAAGGGCTACAATCTAGCTA 58.298 41.667 0.00 0.00 40.25 3.32
4601 5830 4.278669 GGCTACAATCTAGCTAGCACAGTA 59.721 45.833 18.83 13.49 40.25 2.74
4689 5918 4.646492 GGTTCAGGTGGATTTGAATAGCAT 59.354 41.667 0.00 0.00 35.91 3.79
4690 5919 5.827797 GGTTCAGGTGGATTTGAATAGCATA 59.172 40.000 0.00 0.00 35.91 3.14
4691 5920 6.238759 GGTTCAGGTGGATTTGAATAGCATAC 60.239 42.308 0.00 0.00 35.91 2.39
4692 5921 6.000246 TCAGGTGGATTTGAATAGCATACA 58.000 37.500 0.00 0.00 0.00 2.29
4693 5922 5.822519 TCAGGTGGATTTGAATAGCATACAC 59.177 40.000 0.00 0.00 0.00 2.90
4694 5923 5.009010 CAGGTGGATTTGAATAGCATACACC 59.991 44.000 4.80 4.80 0.00 4.16
4695 5924 4.887071 GGTGGATTTGAATAGCATACACCA 59.113 41.667 7.75 0.00 0.00 4.17
4696 5925 5.536161 GGTGGATTTGAATAGCATACACCAT 59.464 40.000 7.75 0.00 0.00 3.55
4823 6052 0.819259 TGCTTCCAAGTGGTGAGCAC 60.819 55.000 19.91 6.68 44.21 4.40
4830 6059 3.327757 TCCAAGTGGTGAGCACTATCTTT 59.672 43.478 18.41 0.00 36.34 2.52
4863 6093 5.774498 ACAGTCCAGTTTCCAAAATTCTC 57.226 39.130 0.00 0.00 0.00 2.87
4972 6453 2.764010 TGGATGAGCCGTACTACATTGT 59.236 45.455 0.00 0.00 40.66 2.71
5305 6874 1.003355 CCTCCGACATGTTGTGCCT 60.003 57.895 12.19 0.00 0.00 4.75
5410 6979 3.189287 ACGAAAAGCTAGAAATGGCAGTG 59.811 43.478 0.00 0.00 0.00 3.66
5510 7079 9.178758 AGAGATCATTACCCAGTTAACAAAATC 57.821 33.333 8.61 1.89 0.00 2.17
5789 7485 1.548719 TGTCGGCAGCATAAGTACACT 59.451 47.619 0.00 0.00 0.00 3.55
5920 7625 7.978099 ATGCTTAGTGAAAGGGGAAAATAAT 57.022 32.000 0.00 0.00 35.58 1.28
5972 7677 7.011482 CACCTTTTCTATTGTACTATCCACTGC 59.989 40.741 0.00 0.00 0.00 4.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
51 52 9.952030 AAAAATATTGACCGGGTATTCAAAAAT 57.048 25.926 6.32 2.45 35.42 1.82
431 433 9.769093 GCATCCGGAAATGTTAAATATGTATAC 57.231 33.333 9.01 0.00 0.00 1.47
432 434 9.733556 AGCATCCGGAAATGTTAAATATGTATA 57.266 29.630 9.01 0.00 0.00 1.47
433 435 8.635765 AGCATCCGGAAATGTTAAATATGTAT 57.364 30.769 9.01 0.00 0.00 2.29
434 436 8.349245 CAAGCATCCGGAAATGTTAAATATGTA 58.651 33.333 9.01 0.00 0.00 2.29
435 437 6.959639 AGCATCCGGAAATGTTAAATATGT 57.040 33.333 9.01 0.00 0.00 2.29
436 438 7.424803 TCAAGCATCCGGAAATGTTAAATATG 58.575 34.615 9.01 0.00 0.00 1.78
437 439 7.581213 TCAAGCATCCGGAAATGTTAAATAT 57.419 32.000 9.01 0.00 0.00 1.28
438 440 7.581213 ATCAAGCATCCGGAAATGTTAAATA 57.419 32.000 9.01 0.00 0.00 1.40
439 441 5.913137 TCAAGCATCCGGAAATGTTAAAT 57.087 34.783 9.01 0.00 0.00 1.40
440 442 5.913137 ATCAAGCATCCGGAAATGTTAAA 57.087 34.783 9.01 0.00 0.00 1.52
441 443 5.913137 AATCAAGCATCCGGAAATGTTAA 57.087 34.783 9.01 0.00 0.00 2.01
442 444 6.375736 TGTTAATCAAGCATCCGGAAATGTTA 59.624 34.615 9.01 0.00 0.00 2.41
443 445 5.184864 TGTTAATCAAGCATCCGGAAATGTT 59.815 36.000 9.01 0.00 0.00 2.71
444 446 4.704540 TGTTAATCAAGCATCCGGAAATGT 59.295 37.500 9.01 0.00 0.00 2.71
445 447 5.247507 TGTTAATCAAGCATCCGGAAATG 57.752 39.130 9.01 3.97 0.00 2.32
446 448 6.469782 AATGTTAATCAAGCATCCGGAAAT 57.530 33.333 9.01 0.00 0.00 2.17
447 449 5.913137 AATGTTAATCAAGCATCCGGAAA 57.087 34.783 9.01 0.00 0.00 3.13
448 450 5.913137 AAATGTTAATCAAGCATCCGGAA 57.087 34.783 9.01 0.00 0.00 4.30
449 451 5.913137 AAAATGTTAATCAAGCATCCGGA 57.087 34.783 6.61 6.61 0.00 5.14
450 452 8.472683 TTTAAAAATGTTAATCAAGCATCCGG 57.527 30.769 0.00 0.00 0.00 5.14
539 541 8.935844 GTTGATCATGTACTAACACTGATGAAA 58.064 33.333 0.00 0.00 38.78 2.69
592 596 8.899427 TTTCAAAAATGTTAATCAAGCATCCA 57.101 26.923 0.00 0.00 0.00 3.41
863 873 4.671569 GGCTAGCGAGATGGGCCG 62.672 72.222 9.00 0.00 33.30 6.13
883 893 2.346803 GCCAGTTATGACTCGCTGAAA 58.653 47.619 0.00 0.00 37.09 2.69
896 906 2.871096 AACGAAGGATTGGCCAGTTA 57.129 45.000 5.11 0.00 40.02 2.24
900 910 0.404040 AGGAAACGAAGGATTGGCCA 59.596 50.000 0.00 0.00 40.02 5.36
901 911 1.202348 CAAGGAAACGAAGGATTGGCC 59.798 52.381 0.00 0.00 0.00 5.36
902 912 1.402852 GCAAGGAAACGAAGGATTGGC 60.403 52.381 0.00 0.00 0.00 4.52
903 913 1.202348 GGCAAGGAAACGAAGGATTGG 59.798 52.381 0.00 0.00 0.00 3.16
904 914 1.135689 CGGCAAGGAAACGAAGGATTG 60.136 52.381 0.00 0.00 0.00 2.67
933 2078 2.440980 GGGATTGGTGAGGCTGGC 60.441 66.667 0.00 0.00 0.00 4.85
934 2079 2.276309 GAGGGGATTGGTGAGGCTGG 62.276 65.000 0.00 0.00 0.00 4.85
1041 2189 4.416601 CCTCCCTCTTCCGGGGGT 62.417 72.222 12.70 0.00 43.74 4.95
1250 2398 3.849951 GCGGAATGGGGAGCGAGA 61.850 66.667 0.00 0.00 0.00 4.04
1315 2481 3.300667 CTGCCTCGCGCTGTTGAAC 62.301 63.158 5.56 0.00 38.78 3.18
1368 2541 2.012673 AGCATCGAAACTTCAGGATGC 58.987 47.619 17.59 17.59 43.82 3.91
1394 2567 3.437795 ATCCAACGCAGCAGCAGC 61.438 61.111 0.82 0.00 42.27 5.25
1395 2568 1.374343 ATCATCCAACGCAGCAGCAG 61.374 55.000 0.82 0.00 42.27 4.24
1402 2575 1.271934 CACCCAAAATCATCCAACGCA 59.728 47.619 0.00 0.00 0.00 5.24
1420 2593 0.385974 CGTACCTGCAAAAGCAGCAC 60.386 55.000 11.76 10.25 37.02 4.40
1826 3014 9.793252 CAATAGAAATAGAAAACACATTCTGGG 57.207 33.333 0.01 0.00 39.87 4.45
2317 3513 5.066913 ACTGAAATTCCCTTGGAAGACTT 57.933 39.130 1.64 0.00 45.48 3.01
2358 3554 2.334977 TGAGGACTTTGGTAGCTGGAA 58.665 47.619 0.00 0.00 0.00 3.53
2487 3683 7.141363 CCTCAAGAAACAGAAATCGACATTTT 58.859 34.615 0.00 0.00 31.94 1.82
2558 3754 5.869753 ATGACCTCAAGAAACAGAAATCG 57.130 39.130 0.00 0.00 0.00 3.34
2560 3756 6.581171 GGAATGACCTCAAGAAACAGAAAT 57.419 37.500 0.00 0.00 35.41 2.17
2575 3771 4.963628 ACTTCTTACCCTAGAGGAATGACC 59.036 45.833 0.00 0.00 39.89 4.02
2576 3772 5.657302 TGACTTCTTACCCTAGAGGAATGAC 59.343 44.000 0.00 0.00 39.89 3.06
2577 3773 5.838955 TGACTTCTTACCCTAGAGGAATGA 58.161 41.667 0.00 0.00 39.89 2.57
2578 3774 6.325028 TGATGACTTCTTACCCTAGAGGAATG 59.675 42.308 0.00 0.00 39.89 2.67
2579 3775 6.444704 TGATGACTTCTTACCCTAGAGGAAT 58.555 40.000 0.00 0.00 39.89 3.01
2580 3776 5.838955 TGATGACTTCTTACCCTAGAGGAA 58.161 41.667 0.00 0.00 39.89 3.36
2581 3777 5.467668 TGATGACTTCTTACCCTAGAGGA 57.532 43.478 0.00 0.00 39.89 3.71
2582 3778 6.739331 AATGATGACTTCTTACCCTAGAGG 57.261 41.667 0.00 0.00 43.78 3.69
2583 3779 9.535878 GTTTAATGATGACTTCTTACCCTAGAG 57.464 37.037 0.00 0.00 0.00 2.43
2584 3780 9.268282 AGTTTAATGATGACTTCTTACCCTAGA 57.732 33.333 0.00 0.00 0.00 2.43
2585 3781 9.535878 GAGTTTAATGATGACTTCTTACCCTAG 57.464 37.037 0.00 0.00 0.00 3.02
2586 3782 9.042450 TGAGTTTAATGATGACTTCTTACCCTA 57.958 33.333 0.00 0.00 0.00 3.53
2587 3783 7.918076 TGAGTTTAATGATGACTTCTTACCCT 58.082 34.615 0.00 0.00 0.00 4.34
2588 3784 8.616076 CATGAGTTTAATGATGACTTCTTACCC 58.384 37.037 0.00 0.00 0.00 3.69
2589 3785 9.167311 ACATGAGTTTAATGATGACTTCTTACC 57.833 33.333 0.00 0.00 0.00 2.85
2591 3787 9.942850 TGACATGAGTTTAATGATGACTTCTTA 57.057 29.630 0.00 0.00 0.00 2.10
2592 3788 8.853077 TGACATGAGTTTAATGATGACTTCTT 57.147 30.769 0.00 0.00 0.00 2.52
2595 3791 9.896645 AGTATGACATGAGTTTAATGATGACTT 57.103 29.630 0.00 0.00 0.00 3.01
2596 3792 9.539825 GAGTATGACATGAGTTTAATGATGACT 57.460 33.333 0.00 0.00 0.00 3.41
2597 3793 8.483218 CGAGTATGACATGAGTTTAATGATGAC 58.517 37.037 0.00 0.00 0.00 3.06
2598 3794 8.413229 TCGAGTATGACATGAGTTTAATGATGA 58.587 33.333 0.00 0.00 0.00 2.92
2599 3795 8.579682 TCGAGTATGACATGAGTTTAATGATG 57.420 34.615 0.00 0.00 0.00 3.07
2600 3796 9.770097 AATCGAGTATGACATGAGTTTAATGAT 57.230 29.630 0.00 0.00 0.00 2.45
2601 3797 9.599866 AAATCGAGTATGACATGAGTTTAATGA 57.400 29.630 0.00 0.00 0.00 2.57
2602 3798 9.855361 GAAATCGAGTATGACATGAGTTTAATG 57.145 33.333 0.00 0.00 0.00 1.90
2603 3799 9.823647 AGAAATCGAGTATGACATGAGTTTAAT 57.176 29.630 0.00 0.00 0.00 1.40
2604 3800 9.087424 CAGAAATCGAGTATGACATGAGTTTAA 57.913 33.333 0.00 0.00 0.00 1.52
2605 3801 8.251026 ACAGAAATCGAGTATGACATGAGTTTA 58.749 33.333 0.00 0.00 0.00 2.01
2606 3802 7.099764 ACAGAAATCGAGTATGACATGAGTTT 58.900 34.615 0.00 0.00 0.00 2.66
2607 3803 6.634805 ACAGAAATCGAGTATGACATGAGTT 58.365 36.000 0.00 0.00 0.00 3.01
2608 3804 6.214191 ACAGAAATCGAGTATGACATGAGT 57.786 37.500 0.00 0.00 0.00 3.41
2609 3805 7.490725 AGAAACAGAAATCGAGTATGACATGAG 59.509 37.037 0.00 0.00 0.00 2.90
2610 3806 7.323420 AGAAACAGAAATCGAGTATGACATGA 58.677 34.615 0.00 0.00 0.00 3.07
2611 3807 7.531280 AGAAACAGAAATCGAGTATGACATG 57.469 36.000 5.17 0.00 0.00 3.21
2612 3808 7.819415 TCAAGAAACAGAAATCGAGTATGACAT 59.181 33.333 5.17 0.00 0.00 3.06
2613 3809 7.151976 TCAAGAAACAGAAATCGAGTATGACA 58.848 34.615 5.17 0.00 0.00 3.58
2614 3810 7.201478 CCTCAAGAAACAGAAATCGAGTATGAC 60.201 40.741 5.17 0.00 0.00 3.06
2615 3811 6.813649 CCTCAAGAAACAGAAATCGAGTATGA 59.186 38.462 5.17 0.00 0.00 2.15
2616 3812 6.591834 ACCTCAAGAAACAGAAATCGAGTATG 59.408 38.462 0.00 0.00 0.00 2.39
2617 3813 6.702329 ACCTCAAGAAACAGAAATCGAGTAT 58.298 36.000 0.00 0.00 0.00 2.12
2618 3814 6.097915 ACCTCAAGAAACAGAAATCGAGTA 57.902 37.500 0.00 0.00 0.00 2.59
2619 3815 4.962155 ACCTCAAGAAACAGAAATCGAGT 58.038 39.130 0.00 0.00 0.00 4.18
2620 3816 4.991056 TGACCTCAAGAAACAGAAATCGAG 59.009 41.667 0.00 0.00 0.00 4.04
2621 3817 4.956085 TGACCTCAAGAAACAGAAATCGA 58.044 39.130 0.00 0.00 0.00 3.59
2622 3818 5.869753 ATGACCTCAAGAAACAGAAATCG 57.130 39.130 0.00 0.00 0.00 3.34
2623 3819 6.616017 GGAATGACCTCAAGAAACAGAAATC 58.384 40.000 0.00 0.00 35.41 2.17
2624 3820 6.581171 GGAATGACCTCAAGAAACAGAAAT 57.419 37.500 0.00 0.00 35.41 2.17
2639 3835 4.142160 GGAAGGCATACAAAAGGAATGACC 60.142 45.833 0.00 0.00 39.35 4.02
2640 3836 4.142160 GGGAAGGCATACAAAAGGAATGAC 60.142 45.833 0.00 0.00 0.00 3.06
2641 3837 4.023291 GGGAAGGCATACAAAAGGAATGA 58.977 43.478 0.00 0.00 0.00 2.57
2642 3838 4.026052 AGGGAAGGCATACAAAAGGAATG 58.974 43.478 0.00 0.00 0.00 2.67
2643 3839 4.026052 CAGGGAAGGCATACAAAAGGAAT 58.974 43.478 0.00 0.00 0.00 3.01
2644 3840 3.181423 ACAGGGAAGGCATACAAAAGGAA 60.181 43.478 0.00 0.00 0.00 3.36
2651 3847 4.584638 AACAATACAGGGAAGGCATACA 57.415 40.909 0.00 0.00 0.00 2.29
2652 3848 5.193679 AGAAACAATACAGGGAAGGCATAC 58.806 41.667 0.00 0.00 0.00 2.39
2661 3857 4.398319 ACAGACCAAGAAACAATACAGGG 58.602 43.478 0.00 0.00 0.00 4.45
3008 4204 1.533033 CCTCCCACCCACCCAAAAC 60.533 63.158 0.00 0.00 0.00 2.43
3009 4205 2.015726 ACCTCCCACCCACCCAAAA 61.016 57.895 0.00 0.00 0.00 2.44
3115 4313 9.665264 GCTACTGTTGCCAATAAAGATAATTAC 57.335 33.333 2.72 0.00 0.00 1.89
3200 4406 6.035975 GCCCTGCATAAATATGAAACAACAAC 59.964 38.462 4.63 0.00 35.75 3.32
3346 4552 3.746045 GTGAAGTACCAGTGGAAGACA 57.254 47.619 18.40 6.46 0.00 3.41
3452 4658 3.794971 ACCCCTAATACCCAGGCAATTAA 59.205 43.478 0.00 0.00 0.00 1.40
3512 4718 7.774157 AGAACGGTATACACTAATGAGAAGAGA 59.226 37.037 5.01 0.00 0.00 3.10
3877 5088 7.317722 AGGAAAACTAATCAGAGGTAACAGT 57.682 36.000 0.00 0.00 41.41 3.55
4465 5687 4.331168 GCTATGACTTTGATTCGACTGCTT 59.669 41.667 0.00 0.00 0.00 3.91
4473 5695 7.141363 AGTTGTGTTTGCTATGACTTTGATTC 58.859 34.615 0.00 0.00 0.00 2.52
4477 5699 6.264832 TCAAGTTGTGTTTGCTATGACTTTG 58.735 36.000 2.11 0.00 0.00 2.77
4479 5701 6.449635 TTCAAGTTGTGTTTGCTATGACTT 57.550 33.333 2.11 0.00 0.00 3.01
4481 5703 5.687285 CCTTTCAAGTTGTGTTTGCTATGAC 59.313 40.000 2.11 0.00 0.00 3.06
4491 5713 2.689983 CTGCCTTCCTTTCAAGTTGTGT 59.310 45.455 2.11 0.00 0.00 3.72
4525 5747 8.352201 TCATATTTGTTGAAGCAAGTATATGGC 58.648 33.333 9.68 0.00 34.06 4.40
4608 5837 9.061435 CCTCTCTTTGACAATAGAGTTTTCTTT 57.939 33.333 19.22 0.00 39.13 2.52
4689 5918 9.305555 GAATAGGACTATAGGTGTAATGGTGTA 57.694 37.037 4.43 0.00 0.00 2.90
4690 5919 7.234988 GGAATAGGACTATAGGTGTAATGGTGT 59.765 40.741 4.43 0.00 0.00 4.16
4691 5920 7.455008 AGGAATAGGACTATAGGTGTAATGGTG 59.545 40.741 4.43 0.00 0.00 4.17
4692 5921 7.545546 AGGAATAGGACTATAGGTGTAATGGT 58.454 38.462 4.43 0.00 0.00 3.55
4693 5922 9.543231 TTAGGAATAGGACTATAGGTGTAATGG 57.457 37.037 4.43 0.00 0.00 3.16
4786 6015 5.185828 GGAAGCAATTGGAAACTCAGGTTAT 59.814 40.000 7.72 0.00 34.90 1.89
4823 6052 5.123027 GGACTGTTCTCTTTGGCAAAGATAG 59.877 44.000 35.33 29.42 45.75 2.08
4830 6059 1.490490 ACTGGACTGTTCTCTTTGGCA 59.510 47.619 0.00 0.00 0.00 4.92
5305 6874 8.748412 CAAAATCTGACCCATACAAAAAGGATA 58.252 33.333 0.00 0.00 0.00 2.59
5785 7481 8.874156 TCAGAGCATAAATGGATAAGATAGTGT 58.126 33.333 0.00 0.00 0.00 3.55
5873 7578 0.793861 CAGCATGCCATTTGTTGCAC 59.206 50.000 15.66 0.00 40.88 4.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.