Multiple sequence alignment - TraesCS6D01G029900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G029900 chr6D 100.000 3459 0 0 1 3459 11711584 11708126 0.000000e+00 6388.0
1 TraesCS6D01G029900 chr6D 82.667 375 39 12 2653 3024 469910188 469909837 3.350000e-80 309.0
2 TraesCS6D01G029900 chr6D 88.430 242 26 2 262 502 13155323 13155563 1.210000e-74 291.0
3 TraesCS6D01G029900 chr6D 94.872 39 2 0 597 635 35610250 35610212 1.040000e-05 62.1
4 TraesCS6D01G029900 chr6A 92.994 2041 89 22 634 2649 12960322 12958311 0.000000e+00 2928.0
5 TraesCS6D01G029900 chr6A 85.915 426 32 11 2647 3051 12958269 12957851 2.470000e-116 429.0
6 TraesCS6D01G029900 chr6A 85.037 401 22 15 3043 3437 12957815 12957447 1.170000e-99 374.0
7 TraesCS6D01G029900 chr6A 84.806 283 23 8 1 263 12960735 12960453 2.050000e-67 267.0
8 TraesCS6D01G029900 chr6A 83.230 161 19 6 3234 3392 429063584 429063430 1.290000e-29 141.0
9 TraesCS6D01G029900 chr6A 88.764 89 7 2 1244 1332 212356103 212356188 4.720000e-19 106.0
10 TraesCS6D01G029900 chr6B 89.573 2062 122 46 634 2649 21319182 21317168 0.000000e+00 2531.0
11 TraesCS6D01G029900 chr6B 83.791 401 25 15 3043 3437 21316596 21316230 9.190000e-91 344.0
12 TraesCS6D01G029900 chr6B 85.276 326 15 5 2738 3051 21316936 21316632 4.340000e-79 305.0
13 TraesCS6D01G029900 chr6B 82.680 306 19 9 1234 1539 539277754 539277483 1.240000e-59 241.0
14 TraesCS6D01G029900 chr6B 78.986 276 22 10 3120 3392 550653349 550653107 4.620000e-34 156.0
15 TraesCS6D01G029900 chr3B 87.805 410 50 0 1768 2177 40542668 40542259 6.710000e-132 481.0
16 TraesCS6D01G029900 chr3D 88.976 254 26 2 262 514 236629042 236628790 2.590000e-81 313.0
17 TraesCS6D01G029900 chrUn 84.498 329 17 12 1234 1562 129540644 129540938 9.390000e-76 294.0
18 TraesCS6D01G029900 chrUn 97.368 38 1 0 598 635 32987235 32987272 8.010000e-07 65.8
19 TraesCS6D01G029900 chr2A 88.618 246 23 5 258 502 440944564 440944805 9.390000e-76 294.0
20 TraesCS6D01G029900 chr2A 91.083 157 14 0 1872 2028 68860546 68860702 2.700000e-51 213.0
21 TraesCS6D01G029900 chr2A 79.032 248 17 9 3120 3365 37481253 37481039 1.670000e-28 137.0
22 TraesCS6D01G029900 chr2A 79.032 248 16 10 3120 3365 717369069 717368856 1.670000e-28 137.0
23 TraesCS6D01G029900 chr7D 88.211 246 25 3 262 506 624785406 624785648 1.210000e-74 291.0
24 TraesCS6D01G029900 chr7D 100.000 32 0 0 600 631 610993189 610993220 3.730000e-05 60.2
25 TraesCS6D01G029900 chr2D 87.398 246 28 3 262 505 78385629 78385385 2.630000e-71 279.0
26 TraesCS6D01G029900 chr2D 87.449 247 23 6 258 502 332546269 332546509 9.450000e-71 278.0
27 TraesCS6D01G029900 chr2D 85.938 256 33 3 250 504 79377422 79377169 1.580000e-68 270.0
28 TraesCS6D01G029900 chr4D 87.295 244 29 2 260 502 323567270 323567512 9.450000e-71 278.0
29 TraesCS6D01G029900 chr4D 86.486 259 28 7 258 513 370775684 370775430 9.450000e-71 278.0
30 TraesCS6D01G029900 chr5A 90.446 157 15 0 1872 2028 429999030 429998874 1.260000e-49 207.0
31 TraesCS6D01G029900 chr5A 79.518 249 14 10 3120 3365 581221340 581221126 3.600000e-30 143.0
32 TraesCS6D01G029900 chr5A 77.912 249 19 9 3120 3365 14312396 14312181 4.690000e-24 122.0
33 TraesCS6D01G029900 chr5A 86.869 99 7 5 1234 1332 605801782 605801690 4.720000e-19 106.0
34 TraesCS6D01G029900 chr5A 88.372 86 7 2 1247 1332 625752654 625752572 2.200000e-17 100.0
35 TraesCS6D01G029900 chr7A 79.116 249 16 12 3120 3365 34400190 34400405 4.660000e-29 139.0
36 TraesCS6D01G029900 chr7A 97.368 38 1 0 597 634 8732825 8732862 8.010000e-07 65.8
37 TraesCS6D01G029900 chr3A 78.947 247 19 12 3120 3365 98032893 98033107 1.670000e-28 137.0
38 TraesCS6D01G029900 chr1D 97.500 40 1 0 598 637 20587928 20587967 6.190000e-08 69.4
39 TraesCS6D01G029900 chr1D 97.368 38 1 0 598 635 435304596 435304559 8.010000e-07 65.8
40 TraesCS6D01G029900 chr1D 100.000 34 0 0 598 631 406768891 406768924 2.880000e-06 63.9
41 TraesCS6D01G029900 chr2B 100.000 34 0 0 598 631 736242299 736242266 2.880000e-06 63.9
42 TraesCS6D01G029900 chr1A 95.000 40 2 0 598 637 558510875 558510836 2.880000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G029900 chr6D 11708126 11711584 3458 True 6388.0 6388 100.000000 1 3459 1 chr6D.!!$R1 3458
1 TraesCS6D01G029900 chr6A 12957447 12960735 3288 True 999.5 2928 87.188000 1 3437 4 chr6A.!!$R2 3436
2 TraesCS6D01G029900 chr6B 21316230 21319182 2952 True 1060.0 2531 86.213333 634 3437 3 chr6B.!!$R3 2803

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
927 967 0.035056 GTGGGCAGTGAGGCTTGTAT 60.035 55.0 0.0 0.0 43.56 2.29 F
1040 1089 1.089920 CAAGAAATCCACAGAGCCCG 58.910 55.0 0.0 0.0 0.00 6.13 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2326 2387 0.622665 CTGCTCAGAAGGAATGGGGT 59.377 55.0 0.0 0.0 0.00 4.95 R
2689 2832 1.064825 TCCCAGGAGGAACTTTGGTC 58.935 55.0 0.0 0.0 43.78 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 4.559862 ACCCAAATGAACCTGAGTCTAG 57.440 45.455 0.00 0.00 0.00 2.43
38 39 3.898529 AGTCTAGACCGAACAAAGTTCG 58.101 45.455 19.38 21.49 41.21 3.95
47 48 7.474190 AGACCGAACAAAGTTCGAAAATAAAA 58.526 30.769 27.74 0.00 43.97 1.52
114 125 7.661127 ATTATACTCACGTGTAAAGTTGCAA 57.339 32.000 16.51 0.00 31.76 4.08
116 127 4.273005 ACTCACGTGTAAAGTTGCAAAG 57.727 40.909 16.51 3.15 0.00 2.77
123 134 6.417635 CACGTGTAAAGTTGCAAAGAAATGAT 59.582 34.615 7.58 0.00 0.00 2.45
140 157 8.641498 AGAAATGATTTATGTGGTCTTCTGTT 57.359 30.769 0.00 0.00 0.00 3.16
209 226 9.157104 CCAAAATTTTGTAGGTTGTAGTTTTGT 57.843 29.630 25.25 0.00 36.45 2.83
229 246 3.829601 TGTTTTTCCGCCCATAAGAACAT 59.170 39.130 0.00 0.00 0.00 2.71
231 248 5.477291 TGTTTTTCCGCCCATAAGAACATTA 59.523 36.000 0.00 0.00 0.00 1.90
232 249 5.570234 TTTTCCGCCCATAAGAACATTAC 57.430 39.130 0.00 0.00 0.00 1.89
233 250 4.497291 TTCCGCCCATAAGAACATTACT 57.503 40.909 0.00 0.00 0.00 2.24
236 257 5.258051 TCCGCCCATAAGAACATTACTTTT 58.742 37.500 0.00 0.00 0.00 2.27
263 284 4.656041 AGCGAAACTACGTATGTGAGTAC 58.344 43.478 0.00 0.00 35.59 2.73
264 285 4.394300 AGCGAAACTACGTATGTGAGTACT 59.606 41.667 0.00 0.00 35.59 2.73
265 286 4.727655 GCGAAACTACGTATGTGAGTACTC 59.272 45.833 16.32 16.32 35.59 2.59
267 288 5.573337 AAACTACGTATGTGAGTACTCCC 57.427 43.478 20.11 9.54 0.00 4.30
269 290 4.450053 ACTACGTATGTGAGTACTCCCTC 58.550 47.826 20.11 10.89 0.00 4.30
271 292 2.025605 ACGTATGTGAGTACTCCCTCCA 60.026 50.000 20.11 11.43 0.00 3.86
272 293 3.223435 CGTATGTGAGTACTCCCTCCAT 58.777 50.000 20.11 16.84 0.00 3.41
274 295 1.763968 TGTGAGTACTCCCTCCATCG 58.236 55.000 20.11 0.00 0.00 3.84
277 298 3.137728 TGTGAGTACTCCCTCCATCGATA 59.862 47.826 20.11 0.00 0.00 2.92
279 300 5.013808 TGTGAGTACTCCCTCCATCGATATA 59.986 44.000 20.11 0.00 0.00 0.86
281 302 7.092578 TGTGAGTACTCCCTCCATCGATATATA 60.093 40.741 20.11 0.00 0.00 0.86
283 304 7.092578 TGAGTACTCCCTCCATCGATATATACA 60.093 40.741 20.11 0.00 0.00 2.29
284 305 7.817440 AGTACTCCCTCCATCGATATATACAT 58.183 38.462 0.00 0.00 0.00 2.29
285 306 6.968263 ACTCCCTCCATCGATATATACATG 57.032 41.667 0.00 0.00 0.00 3.21
286 307 5.835819 ACTCCCTCCATCGATATATACATGG 59.164 44.000 13.23 13.23 37.70 3.66
287 308 4.588951 TCCCTCCATCGATATATACATGGC 59.411 45.833 14.14 0.00 36.49 4.40
288 309 4.262635 CCCTCCATCGATATATACATGGCC 60.263 50.000 14.14 0.00 36.49 5.36
289 310 4.590647 CCTCCATCGATATATACATGGCCT 59.409 45.833 3.32 0.00 36.49 5.19
290 311 5.775195 CCTCCATCGATATATACATGGCCTA 59.225 44.000 3.32 0.00 36.49 3.93
291 312 6.267699 CCTCCATCGATATATACATGGCCTAA 59.732 42.308 3.32 0.00 36.49 2.69
292 313 7.038729 CCTCCATCGATATATACATGGCCTAAT 60.039 40.741 3.32 0.00 36.49 1.73
293 314 7.670364 TCCATCGATATATACATGGCCTAATG 58.330 38.462 3.32 2.28 36.49 1.90
294 315 7.290014 TCCATCGATATATACATGGCCTAATGT 59.710 37.037 12.89 12.89 43.21 2.71
295 316 7.386025 CCATCGATATATACATGGCCTAATGTG 59.614 40.741 16.93 5.29 40.93 3.21
296 317 7.418337 TCGATATATACATGGCCTAATGTGT 57.582 36.000 16.93 13.30 40.93 3.72
297 318 7.264947 TCGATATATACATGGCCTAATGTGTG 58.735 38.462 16.93 1.21 40.93 3.82
298 319 7.041721 CGATATATACATGGCCTAATGTGTGT 58.958 38.462 16.93 11.79 40.93 3.72
299 320 7.549134 CGATATATACATGGCCTAATGTGTGTT 59.451 37.037 16.93 7.06 40.93 3.32
300 321 9.231297 GATATATACATGGCCTAATGTGTGTTT 57.769 33.333 16.93 5.85 40.93 2.83
301 322 7.896383 ATATACATGGCCTAATGTGTGTTTT 57.104 32.000 16.93 0.00 40.93 2.43
302 323 4.953940 ACATGGCCTAATGTGTGTTTTT 57.046 36.364 7.87 0.00 39.32 1.94
303 324 4.630111 ACATGGCCTAATGTGTGTTTTTG 58.370 39.130 7.87 0.00 39.32 2.44
304 325 4.343526 ACATGGCCTAATGTGTGTTTTTGA 59.656 37.500 7.87 0.00 39.32 2.69
305 326 4.582701 TGGCCTAATGTGTGTTTTTGAG 57.417 40.909 3.32 0.00 0.00 3.02
306 327 4.211125 TGGCCTAATGTGTGTTTTTGAGA 58.789 39.130 3.32 0.00 0.00 3.27
307 328 4.832266 TGGCCTAATGTGTGTTTTTGAGAT 59.168 37.500 3.32 0.00 0.00 2.75
308 329 5.304101 TGGCCTAATGTGTGTTTTTGAGATT 59.696 36.000 3.32 0.00 0.00 2.40
309 330 5.634859 GGCCTAATGTGTGTTTTTGAGATTG 59.365 40.000 0.00 0.00 0.00 2.67
310 331 5.119125 GCCTAATGTGTGTTTTTGAGATTGC 59.881 40.000 0.00 0.00 0.00 3.56
311 332 5.634859 CCTAATGTGTGTTTTTGAGATTGCC 59.365 40.000 0.00 0.00 0.00 4.52
312 333 4.942761 ATGTGTGTTTTTGAGATTGCCT 57.057 36.364 0.00 0.00 0.00 4.75
313 334 4.734398 TGTGTGTTTTTGAGATTGCCTT 57.266 36.364 0.00 0.00 0.00 4.35
314 335 5.083533 TGTGTGTTTTTGAGATTGCCTTT 57.916 34.783 0.00 0.00 0.00 3.11
315 336 4.869297 TGTGTGTTTTTGAGATTGCCTTTG 59.131 37.500 0.00 0.00 0.00 2.77
316 337 5.108517 GTGTGTTTTTGAGATTGCCTTTGA 58.891 37.500 0.00 0.00 0.00 2.69
317 338 5.005682 GTGTGTTTTTGAGATTGCCTTTGAC 59.994 40.000 0.00 0.00 0.00 3.18
318 339 5.105392 TGTGTTTTTGAGATTGCCTTTGACT 60.105 36.000 0.00 0.00 0.00 3.41
319 340 6.096141 TGTGTTTTTGAGATTGCCTTTGACTA 59.904 34.615 0.00 0.00 0.00 2.59
320 341 7.147976 GTGTTTTTGAGATTGCCTTTGACTAT 58.852 34.615 0.00 0.00 0.00 2.12
321 342 7.653311 GTGTTTTTGAGATTGCCTTTGACTATT 59.347 33.333 0.00 0.00 0.00 1.73
322 343 7.652909 TGTTTTTGAGATTGCCTTTGACTATTG 59.347 33.333 0.00 0.00 0.00 1.90
323 344 7.523293 TTTTGAGATTGCCTTTGACTATTGA 57.477 32.000 0.00 0.00 0.00 2.57
324 345 7.707624 TTTGAGATTGCCTTTGACTATTGAT 57.292 32.000 0.00 0.00 0.00 2.57
325 346 8.806429 TTTGAGATTGCCTTTGACTATTGATA 57.194 30.769 0.00 0.00 0.00 2.15
326 347 8.806429 TTGAGATTGCCTTTGACTATTGATAA 57.194 30.769 0.00 0.00 0.00 1.75
327 348 8.442632 TGAGATTGCCTTTGACTATTGATAAG 57.557 34.615 0.00 0.00 0.00 1.73
328 349 8.267183 TGAGATTGCCTTTGACTATTGATAAGA 58.733 33.333 0.00 0.00 0.00 2.10
329 350 9.282569 GAGATTGCCTTTGACTATTGATAAGAT 57.717 33.333 0.00 0.00 0.00 2.40
330 351 9.638176 AGATTGCCTTTGACTATTGATAAGATT 57.362 29.630 0.00 0.00 0.00 2.40
375 396 9.686683 AATGTGAAAACTATACCATTAGAAGCT 57.313 29.630 0.00 0.00 0.00 3.74
376 397 9.686683 ATGTGAAAACTATACCATTAGAAGCTT 57.313 29.630 0.00 0.00 0.00 3.74
377 398 9.162764 TGTGAAAACTATACCATTAGAAGCTTC 57.837 33.333 19.11 19.11 0.00 3.86
378 399 9.384764 GTGAAAACTATACCATTAGAAGCTTCT 57.615 33.333 30.63 30.63 41.24 2.85
379 400 9.959721 TGAAAACTATACCATTAGAAGCTTCTT 57.040 29.630 32.70 17.53 38.70 2.52
382 403 9.959721 AAACTATACCATTAGAAGCTTCTTTCA 57.040 29.630 32.70 17.96 38.70 2.69
383 404 8.950208 ACTATACCATTAGAAGCTTCTTTCAC 57.050 34.615 32.70 3.12 38.70 3.18
384 405 6.910536 ATACCATTAGAAGCTTCTTTCACG 57.089 37.500 32.70 18.47 38.70 4.35
385 406 4.642429 ACCATTAGAAGCTTCTTTCACGT 58.358 39.130 32.70 19.05 38.70 4.49
386 407 5.790593 ACCATTAGAAGCTTCTTTCACGTA 58.209 37.500 32.70 11.45 38.70 3.57
387 408 5.638234 ACCATTAGAAGCTTCTTTCACGTAC 59.362 40.000 32.70 0.00 38.70 3.67
388 409 5.220228 CCATTAGAAGCTTCTTTCACGTACG 60.220 44.000 32.70 15.01 38.70 3.67
389 410 3.637998 AGAAGCTTCTTTCACGTACGA 57.362 42.857 23.49 0.00 32.55 3.43
390 411 3.973657 AGAAGCTTCTTTCACGTACGAA 58.026 40.909 23.49 3.37 32.55 3.85
391 412 4.365723 AGAAGCTTCTTTCACGTACGAAA 58.634 39.130 23.49 11.99 32.55 3.46
392 413 4.989168 AGAAGCTTCTTTCACGTACGAAAT 59.011 37.500 23.49 0.00 34.50 2.17
393 414 5.465724 AGAAGCTTCTTTCACGTACGAAATT 59.534 36.000 23.49 3.78 34.50 1.82
394 415 5.018695 AGCTTCTTTCACGTACGAAATTG 57.981 39.130 24.41 9.92 34.50 2.32
395 416 4.748102 AGCTTCTTTCACGTACGAAATTGA 59.252 37.500 24.41 12.38 34.50 2.57
396 417 4.839174 GCTTCTTTCACGTACGAAATTGAC 59.161 41.667 24.41 0.00 34.50 3.18
397 418 4.618338 TCTTTCACGTACGAAATTGACG 57.382 40.909 24.41 8.69 42.22 4.35
398 419 3.426191 TCTTTCACGTACGAAATTGACGG 59.574 43.478 24.41 9.85 40.84 4.79
399 420 2.420628 TCACGTACGAAATTGACGGT 57.579 45.000 24.41 0.00 40.84 4.83
400 421 3.550950 TCACGTACGAAATTGACGGTA 57.449 42.857 24.41 0.00 40.84 4.02
401 422 4.095410 TCACGTACGAAATTGACGGTAT 57.905 40.909 24.41 0.00 40.84 2.73
402 423 3.853103 TCACGTACGAAATTGACGGTATG 59.147 43.478 24.41 4.75 40.84 2.39
403 424 2.599973 ACGTACGAAATTGACGGTATGC 59.400 45.455 24.41 0.00 40.84 3.14
404 425 2.855963 CGTACGAAATTGACGGTATGCT 59.144 45.455 10.44 0.00 33.01 3.79
405 426 3.061403 CGTACGAAATTGACGGTATGCTC 60.061 47.826 10.44 0.00 33.01 4.26
406 427 3.247006 ACGAAATTGACGGTATGCTCT 57.753 42.857 9.46 0.00 34.93 4.09
407 428 2.930040 ACGAAATTGACGGTATGCTCTG 59.070 45.455 9.46 0.00 34.93 3.35
408 429 2.930040 CGAAATTGACGGTATGCTCTGT 59.070 45.455 0.00 0.00 0.00 3.41
409 430 3.242091 CGAAATTGACGGTATGCTCTGTG 60.242 47.826 0.00 0.00 0.00 3.66
410 431 3.334583 AATTGACGGTATGCTCTGTGT 57.665 42.857 0.00 0.00 0.00 3.72
411 432 4.465632 AATTGACGGTATGCTCTGTGTA 57.534 40.909 0.00 0.00 0.00 2.90
412 433 3.945981 TTGACGGTATGCTCTGTGTAA 57.054 42.857 0.00 0.00 0.00 2.41
413 434 3.226346 TGACGGTATGCTCTGTGTAAC 57.774 47.619 0.00 0.00 37.35 2.50
414 435 2.823747 TGACGGTATGCTCTGTGTAACT 59.176 45.455 0.00 0.00 38.04 2.24
415 436 3.257375 TGACGGTATGCTCTGTGTAACTT 59.743 43.478 0.00 0.00 38.04 2.66
416 437 3.585862 ACGGTATGCTCTGTGTAACTTG 58.414 45.455 0.00 0.00 38.04 3.16
417 438 2.348666 CGGTATGCTCTGTGTAACTTGC 59.651 50.000 0.00 0.00 38.04 4.01
418 439 3.334691 GGTATGCTCTGTGTAACTTGCA 58.665 45.455 0.00 0.00 39.97 4.08
419 440 3.941483 GGTATGCTCTGTGTAACTTGCAT 59.059 43.478 0.00 0.00 44.54 3.96
420 441 4.201851 GGTATGCTCTGTGTAACTTGCATG 60.202 45.833 8.29 0.00 43.24 4.06
421 442 2.849942 TGCTCTGTGTAACTTGCATGT 58.150 42.857 0.00 0.00 38.04 3.21
422 443 2.807967 TGCTCTGTGTAACTTGCATGTC 59.192 45.455 5.61 0.00 38.04 3.06
423 444 2.807967 GCTCTGTGTAACTTGCATGTCA 59.192 45.455 5.61 0.00 38.04 3.58
424 445 3.438087 GCTCTGTGTAACTTGCATGTCAT 59.562 43.478 5.61 0.00 38.04 3.06
425 446 4.631377 GCTCTGTGTAACTTGCATGTCATA 59.369 41.667 5.61 0.00 38.04 2.15
426 447 5.295292 GCTCTGTGTAACTTGCATGTCATAT 59.705 40.000 5.61 0.00 38.04 1.78
427 448 6.479990 GCTCTGTGTAACTTGCATGTCATATA 59.520 38.462 5.61 0.00 38.04 0.86
428 449 7.172190 GCTCTGTGTAACTTGCATGTCATATAT 59.828 37.037 5.61 0.00 38.04 0.86
429 450 8.962884 TCTGTGTAACTTGCATGTCATATATT 57.037 30.769 5.61 0.00 38.04 1.28
435 456 9.559958 GTAACTTGCATGTCATATATTATTGCC 57.440 33.333 5.61 0.00 0.00 4.52
436 457 7.161773 ACTTGCATGTCATATATTATTGCCC 57.838 36.000 0.00 0.00 0.00 5.36
437 458 6.950041 ACTTGCATGTCATATATTATTGCCCT 59.050 34.615 0.00 0.00 0.00 5.19
438 459 8.108999 ACTTGCATGTCATATATTATTGCCCTA 58.891 33.333 0.00 0.00 0.00 3.53
439 460 8.876303 TTGCATGTCATATATTATTGCCCTAA 57.124 30.769 0.00 0.00 0.00 2.69
440 461 8.279970 TGCATGTCATATATTATTGCCCTAAC 57.720 34.615 0.00 0.00 0.00 2.34
441 462 7.887495 TGCATGTCATATATTATTGCCCTAACA 59.113 33.333 0.00 0.00 0.00 2.41
442 463 8.906867 GCATGTCATATATTATTGCCCTAACAT 58.093 33.333 0.00 0.00 0.00 2.71
444 465 9.979897 ATGTCATATATTATTGCCCTAACATGT 57.020 29.630 0.00 0.00 0.00 3.21
453 474 9.695155 ATTATTGCCCTAACATGTAGTTAAAGT 57.305 29.630 0.00 0.00 41.89 2.66
454 475 9.523168 TTATTGCCCTAACATGTAGTTAAAGTT 57.477 29.630 0.00 0.00 41.89 2.66
456 477 8.556213 TTGCCCTAACATGTAGTTAAAGTTAG 57.444 34.615 0.00 0.00 41.89 2.34
457 478 6.596497 TGCCCTAACATGTAGTTAAAGTTAGC 59.404 38.462 0.00 0.00 41.89 3.09
458 479 6.037940 GCCCTAACATGTAGTTAAAGTTAGCC 59.962 42.308 0.00 0.00 41.89 3.93
459 480 7.336396 CCCTAACATGTAGTTAAAGTTAGCCT 58.664 38.462 0.00 0.00 41.89 4.58
460 481 8.480501 CCCTAACATGTAGTTAAAGTTAGCCTA 58.519 37.037 0.00 0.00 41.89 3.93
461 482 9.880157 CCTAACATGTAGTTAAAGTTAGCCTAA 57.120 33.333 0.00 0.00 41.89 2.69
483 504 9.975218 CCTAAAAACATACATTAGGCCCTATAT 57.025 33.333 0.00 0.00 39.29 0.86
489 510 8.497910 ACATACATTAGGCCCTATATAGATGG 57.502 38.462 11.53 6.04 0.00 3.51
490 511 8.296906 ACATACATTAGGCCCTATATAGATGGA 58.703 37.037 11.53 3.09 0.00 3.41
491 512 9.331466 CATACATTAGGCCCTATATAGATGGAT 57.669 37.037 11.53 5.23 0.00 3.41
493 514 8.964533 ACATTAGGCCCTATATAGATGGATAG 57.035 38.462 11.53 0.00 0.00 2.08
494 515 8.523864 ACATTAGGCCCTATATAGATGGATAGT 58.476 37.037 11.53 0.00 0.00 2.12
495 516 8.811017 CATTAGGCCCTATATAGATGGATAGTG 58.189 40.741 11.53 5.49 0.00 2.74
496 517 5.721225 AGGCCCTATATAGATGGATAGTGG 58.279 45.833 11.53 1.87 0.00 4.00
497 518 4.841246 GGCCCTATATAGATGGATAGTGGG 59.159 50.000 11.53 1.96 33.87 4.61
498 519 5.401470 GGCCCTATATAGATGGATAGTGGGA 60.401 48.000 11.53 0.00 33.14 4.37
499 520 5.777732 GCCCTATATAGATGGATAGTGGGAG 59.222 48.000 11.53 0.00 33.14 4.30
500 521 6.640765 GCCCTATATAGATGGATAGTGGGAGT 60.641 46.154 11.53 0.00 33.14 3.85
501 522 7.422681 GCCCTATATAGATGGATAGTGGGAGTA 60.423 44.444 11.53 0.00 33.14 2.59
502 523 8.683445 CCCTATATAGATGGATAGTGGGAGTAT 58.317 40.741 11.53 0.00 33.14 2.12
513 534 7.291416 TGGATAGTGGGAGTATATAAAGTTGCA 59.709 37.037 0.00 0.00 0.00 4.08
581 610 1.271934 CACATCCCAAAAATCCGCACA 59.728 47.619 0.00 0.00 0.00 4.57
598 627 7.667043 TCCGCACAGGATAATTTATATGAAC 57.333 36.000 7.68 1.05 45.98 3.18
599 628 6.653320 TCCGCACAGGATAATTTATATGAACC 59.347 38.462 7.68 0.00 45.98 3.62
600 629 6.429692 CCGCACAGGATAATTTATATGAACCA 59.570 38.462 7.68 0.00 45.00 3.67
601 630 7.121168 CCGCACAGGATAATTTATATGAACCAT 59.879 37.037 7.68 0.00 45.00 3.55
602 631 8.514594 CGCACAGGATAATTTATATGAACCATT 58.485 33.333 7.68 0.00 0.00 3.16
603 632 9.846248 GCACAGGATAATTTATATGAACCATTC 57.154 33.333 7.68 0.00 0.00 2.67
607 636 9.812347 AGGATAATTTATATGAACCATTCAGCA 57.188 29.630 0.00 0.00 43.98 4.41
623 652 2.855209 AGCATGGATGGTGAGCTATC 57.145 50.000 0.00 0.00 37.10 2.08
624 653 2.336891 AGCATGGATGGTGAGCTATCT 58.663 47.619 0.00 0.00 37.10 1.98
625 654 2.302445 AGCATGGATGGTGAGCTATCTC 59.698 50.000 0.00 0.00 37.10 2.75
626 655 2.038164 GCATGGATGGTGAGCTATCTCA 59.962 50.000 0.00 0.00 46.43 3.27
676 705 7.612668 ATCAGCAAGATCATACAGATAATGC 57.387 36.000 0.00 0.00 43.49 3.56
803 843 0.817634 CCAAGTCAGCCAACGAACCA 60.818 55.000 0.00 0.00 0.00 3.67
877 917 2.187946 CTGACAGGACGGCCCATC 59.812 66.667 1.76 1.42 37.41 3.51
879 919 3.399181 GACAGGACGGCCCATCCA 61.399 66.667 20.35 0.00 38.86 3.41
880 920 3.391665 GACAGGACGGCCCATCCAG 62.392 68.421 20.35 15.50 38.86 3.86
909 949 0.322456 CCACATGTCATTGGGGTCGT 60.322 55.000 0.00 0.00 35.30 4.34
913 953 2.750237 GTCATTGGGGTCGTGGGC 60.750 66.667 0.00 0.00 0.00 5.36
923 963 3.241530 TCGTGGGCAGTGAGGCTT 61.242 61.111 0.00 0.00 43.56 4.35
926 966 1.374947 GTGGGCAGTGAGGCTTGTA 59.625 57.895 0.00 0.00 43.56 2.41
927 967 0.035056 GTGGGCAGTGAGGCTTGTAT 60.035 55.000 0.00 0.00 43.56 2.29
1040 1089 1.089920 CAAGAAATCCACAGAGCCCG 58.910 55.000 0.00 0.00 0.00 6.13
1074 1123 4.660938 AAAGCCCACCACGAGCCC 62.661 66.667 0.00 0.00 0.00 5.19
1610 1668 2.685380 CCAGGCTCTTCCCGGACT 60.685 66.667 0.73 0.00 34.51 3.85
1942 2000 1.815613 CTCCAGGAGCGTATCATCGAT 59.184 52.381 2.60 0.00 0.00 3.59
2083 2141 1.828660 GGAGATCGCCGAGGAGGAA 60.829 63.158 0.00 0.00 45.00 3.36
2526 2614 3.748083 AGTGCTCTTCTTGATGCTCAAA 58.252 40.909 1.25 0.00 35.73 2.69
2548 2636 5.938438 AAGCAGAGAAAAGAGAATGTGTC 57.062 39.130 0.00 0.00 0.00 3.67
2551 2639 5.411977 AGCAGAGAAAAGAGAATGTGTCATG 59.588 40.000 0.00 0.00 0.00 3.07
2573 2663 5.949735 TGTGTTCTGTTGAAAGAGGAAAAC 58.050 37.500 0.00 0.00 33.52 2.43
2579 2669 7.088589 TCTGTTGAAAGAGGAAAACAAGAAG 57.911 36.000 0.00 0.00 32.50 2.85
2617 2712 6.040391 TGTCTCCCAAAAGAACCAAACAATAG 59.960 38.462 0.00 0.00 0.00 1.73
2626 2725 8.477419 AAAGAACCAAACAATAGGAAGAATGA 57.523 30.769 0.00 0.00 0.00 2.57
2649 2748 7.663827 TGATTCAAAGATTGCAGAATTTGTCT 58.336 30.769 15.08 7.45 36.88 3.41
2650 2749 8.145767 TGATTCAAAGATTGCAGAATTTGTCTT 58.854 29.630 15.08 4.22 32.70 3.01
2651 2750 7.703298 TTCAAAGATTGCAGAATTTGTCTTG 57.297 32.000 15.08 1.28 32.70 3.02
2652 2751 6.218019 TCAAAGATTGCAGAATTTGTCTTGG 58.782 36.000 15.08 4.77 32.70 3.61
2662 2805 6.340522 CAGAATTTGTCTTGGTTCCTTTTGT 58.659 36.000 0.00 0.00 32.70 2.83
2667 2810 4.815269 TGTCTTGGTTCCTTTTGTGTTTG 58.185 39.130 0.00 0.00 0.00 2.93
2668 2811 3.616821 GTCTTGGTTCCTTTTGTGTTTGC 59.383 43.478 0.00 0.00 0.00 3.68
2669 2812 3.259374 TCTTGGTTCCTTTTGTGTTTGCA 59.741 39.130 0.00 0.00 0.00 4.08
2670 2813 2.966050 TGGTTCCTTTTGTGTTTGCAC 58.034 42.857 0.00 0.00 45.44 4.57
2671 2814 2.564947 TGGTTCCTTTTGTGTTTGCACT 59.435 40.909 0.00 0.00 45.44 4.40
2718 2862 1.079490 TCCTCCTGGGATCAACAGACT 59.921 52.381 15.82 0.00 39.58 3.24
2752 2900 3.229293 TGCAACTTCCAATCATCAACCA 58.771 40.909 0.00 0.00 0.00 3.67
2753 2901 3.640498 TGCAACTTCCAATCATCAACCAA 59.360 39.130 0.00 0.00 0.00 3.67
2775 2927 7.033791 CCAATTCAAGATTCAGATGACCAAAG 58.966 38.462 0.00 0.00 0.00 2.77
2777 2929 7.771927 ATTCAAGATTCAGATGACCAAAGTT 57.228 32.000 0.00 0.00 0.00 2.66
2811 3074 4.914983 TCATTCAGCTGTTTGAGGAATCT 58.085 39.130 14.67 0.00 0.00 2.40
2815 3078 2.746362 CAGCTGTTTGAGGAATCTGGAC 59.254 50.000 5.25 0.00 0.00 4.02
2899 3168 5.396101 GGACAGAGATGGATGAGTGAATCAA 60.396 44.000 0.00 0.00 42.53 2.57
2910 3179 7.094506 TGGATGAGTGAATCAAAGACAAAGATG 60.095 37.037 0.00 0.00 42.53 2.90
2927 3196 0.680921 ATGGATCAAGTTGGTGGCCG 60.681 55.000 2.34 0.00 0.00 6.13
2964 3233 1.287146 AGAGGAGGCAATCAAAGGCAT 59.713 47.619 0.00 0.00 0.00 4.40
3017 3296 1.134250 TGCAGCTACCAAACAGTGACA 60.134 47.619 0.00 0.00 0.00 3.58
3018 3297 1.532868 GCAGCTACCAAACAGTGACAG 59.467 52.381 0.00 0.00 0.00 3.51
3019 3298 2.806745 GCAGCTACCAAACAGTGACAGA 60.807 50.000 0.00 0.00 0.00 3.41
3020 3299 2.802816 CAGCTACCAAACAGTGACAGAC 59.197 50.000 0.00 0.00 0.00 3.51
3043 3322 3.265221 AGACAGAGATTTGAATGGCCAGA 59.735 43.478 13.05 0.00 0.00 3.86
3051 3330 0.622136 TGAATGGCCAGAGATGTGCT 59.378 50.000 13.05 0.00 0.00 4.40
3067 3388 1.529244 GCTGTGGCACTTTGTCCCT 60.529 57.895 19.83 0.00 38.54 4.20
3068 3389 1.109323 GCTGTGGCACTTTGTCCCTT 61.109 55.000 19.83 0.00 38.54 3.95
3069 3390 1.402787 CTGTGGCACTTTGTCCCTTT 58.597 50.000 19.83 0.00 0.00 3.11
3070 3391 1.338020 CTGTGGCACTTTGTCCCTTTC 59.662 52.381 19.83 0.00 0.00 2.62
3071 3392 1.064017 TGTGGCACTTTGTCCCTTTCT 60.064 47.619 19.83 0.00 0.00 2.52
3112 3433 1.244697 GCTGACCTGTCTGTCCTCGA 61.245 60.000 6.13 0.00 34.25 4.04
3113 3434 1.468985 CTGACCTGTCTGTCCTCGAT 58.531 55.000 0.00 0.00 34.25 3.59
3114 3435 1.403679 CTGACCTGTCTGTCCTCGATC 59.596 57.143 0.00 0.00 34.25 3.69
3115 3436 0.378962 GACCTGTCTGTCCTCGATCG 59.621 60.000 9.36 9.36 0.00 3.69
3141 3462 8.243426 GGCTCTATTCTATGACTAATCTCACAG 58.757 40.741 0.00 0.00 0.00 3.66
3159 3480 2.503895 AGCAATCCTAAAGCTGCACT 57.496 45.000 1.02 0.00 37.20 4.40
3160 3481 2.089980 AGCAATCCTAAAGCTGCACTG 58.910 47.619 1.02 0.00 37.20 3.66
3161 3482 1.468736 GCAATCCTAAAGCTGCACTGC 60.469 52.381 1.02 0.00 34.87 4.40
3162 3483 1.133790 CAATCCTAAAGCTGCACTGCC 59.866 52.381 1.02 0.00 0.00 4.85
3163 3484 0.622665 ATCCTAAAGCTGCACTGCCT 59.377 50.000 1.02 0.00 0.00 4.75
3164 3485 0.036010 TCCTAAAGCTGCACTGCCTC 60.036 55.000 1.02 0.00 0.00 4.70
3165 3486 1.028868 CCTAAAGCTGCACTGCCTCC 61.029 60.000 1.02 0.00 0.00 4.30
3166 3487 0.035630 CTAAAGCTGCACTGCCTCCT 60.036 55.000 1.02 0.00 0.00 3.69
3167 3488 0.321919 TAAAGCTGCACTGCCTCCTG 60.322 55.000 1.02 0.00 0.00 3.86
3184 3505 5.524281 GCCTCCTGAGTTAAGTATTGCTTAC 59.476 44.000 0.00 0.00 39.22 2.34
3185 3506 6.630638 GCCTCCTGAGTTAAGTATTGCTTACT 60.631 42.308 0.00 0.00 43.19 2.24
3186 3507 6.758886 CCTCCTGAGTTAAGTATTGCTTACTG 59.241 42.308 1.40 0.00 40.37 2.74
3187 3508 7.241042 TCCTGAGTTAAGTATTGCTTACTGT 57.759 36.000 1.40 0.00 40.37 3.55
3188 3509 8.357290 TCCTGAGTTAAGTATTGCTTACTGTA 57.643 34.615 1.40 0.00 40.37 2.74
3226 3547 9.113838 TGAGAGAAATAGATAAAAATGTGCCTC 57.886 33.333 0.00 0.00 0.00 4.70
3229 3550 8.814038 AGAAATAGATAAAAATGTGCCTCTGT 57.186 30.769 0.00 0.00 0.00 3.41
3326 3647 4.693095 GGTCTCAATTTTGACTCCAGAGAC 59.307 45.833 10.32 10.32 45.86 3.36
3337 3658 2.498078 ACTCCAGAGACGAAGGGATTTC 59.502 50.000 0.70 0.00 0.00 2.17
3338 3659 2.497675 CTCCAGAGACGAAGGGATTTCA 59.502 50.000 0.00 0.00 35.43 2.69
3343 3670 4.093998 CAGAGACGAAGGGATTTCATTGTG 59.906 45.833 0.00 0.00 35.43 3.33
3347 3674 2.159338 CGAAGGGATTTCATTGTGCTGG 60.159 50.000 0.00 0.00 35.43 4.85
3379 3706 4.753610 CCATGTACTGATGGCATGAGTTAG 59.246 45.833 24.25 11.67 41.62 2.34
3402 3729 5.011125 AGTCTCTGCACTTAGCTTCTTGTAA 59.989 40.000 0.00 0.00 45.94 2.41
3407 3734 6.486657 TCTGCACTTAGCTTCTTGTAAATGTT 59.513 34.615 0.00 0.00 45.94 2.71
3419 3746 9.409312 CTTCTTGTAAATGTTGATTATGTGCAA 57.591 29.630 0.00 0.00 0.00 4.08
3437 3764 6.234920 TGTGCAATTAGACTTAAGCCAGTTA 58.765 36.000 1.29 0.00 0.00 2.24
3438 3765 6.371548 TGTGCAATTAGACTTAAGCCAGTTAG 59.628 38.462 1.29 0.00 0.00 2.34
3439 3766 5.354234 TGCAATTAGACTTAAGCCAGTTAGC 59.646 40.000 1.29 0.92 0.00 3.09
3441 3768 6.761714 GCAATTAGACTTAAGCCAGTTAGCTA 59.238 38.462 1.29 0.00 44.11 3.32
3442 3769 7.042389 GCAATTAGACTTAAGCCAGTTAGCTAG 60.042 40.741 1.29 0.00 44.11 3.42
3443 3770 6.466885 TTAGACTTAAGCCAGTTAGCTAGG 57.533 41.667 1.29 0.00 44.11 3.02
3444 3771 4.354662 AGACTTAAGCCAGTTAGCTAGGT 58.645 43.478 1.29 0.00 44.11 3.08
3445 3772 4.403113 AGACTTAAGCCAGTTAGCTAGGTC 59.597 45.833 1.29 0.00 44.11 3.85
3446 3773 4.094476 ACTTAAGCCAGTTAGCTAGGTCA 58.906 43.478 1.29 0.00 44.11 4.02
3447 3774 4.717280 ACTTAAGCCAGTTAGCTAGGTCAT 59.283 41.667 1.29 0.00 44.11 3.06
3448 3775 5.897824 ACTTAAGCCAGTTAGCTAGGTCATA 59.102 40.000 1.29 0.00 44.11 2.15
3449 3776 6.383147 ACTTAAGCCAGTTAGCTAGGTCATAA 59.617 38.462 1.29 0.00 44.11 1.90
3450 3777 5.896073 AAGCCAGTTAGCTAGGTCATAAT 57.104 39.130 0.00 0.00 44.11 1.28
3451 3778 5.896073 AGCCAGTTAGCTAGGTCATAATT 57.104 39.130 0.00 0.00 42.70 1.40
3452 3779 6.996180 AGCCAGTTAGCTAGGTCATAATTA 57.004 37.500 0.00 0.00 42.70 1.40
3453 3780 7.374975 AGCCAGTTAGCTAGGTCATAATTAA 57.625 36.000 0.00 0.00 42.70 1.40
3454 3781 7.978925 AGCCAGTTAGCTAGGTCATAATTAAT 58.021 34.615 0.00 0.00 42.70 1.40
3455 3782 8.440771 AGCCAGTTAGCTAGGTCATAATTAATT 58.559 33.333 5.89 5.89 42.70 1.40
3456 3783 9.720769 GCCAGTTAGCTAGGTCATAATTAATTA 57.279 33.333 10.27 10.27 0.00 1.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.567164 TCGAACTTTGTTCGGTCTAGACT 59.433 43.478 25.60 0.00 41.78 3.24
23 24 7.667984 TTTTATTTTCGAACTTTGTTCGGTC 57.332 32.000 25.60 0.00 41.78 4.79
114 125 8.641498 ACAGAAGACCACATAAATCATTTCTT 57.359 30.769 0.00 0.00 0.00 2.52
116 127 7.693951 CGAACAGAAGACCACATAAATCATTTC 59.306 37.037 0.00 0.00 0.00 2.17
123 134 6.928979 TTTTCGAACAGAAGACCACATAAA 57.071 33.333 0.00 0.00 40.40 1.40
130 147 4.609691 TGTGTTTTTCGAACAGAAGACC 57.390 40.909 0.00 0.00 40.40 3.85
140 157 5.162075 ACCGATTTTGTTTGTGTTTTTCGA 58.838 33.333 0.00 0.00 0.00 3.71
191 208 7.028361 CGGAAAAACAAAACTACAACCTACAA 58.972 34.615 0.00 0.00 0.00 2.41
196 213 3.552699 GGCGGAAAAACAAAACTACAACC 59.447 43.478 0.00 0.00 0.00 3.77
202 219 4.342665 TCTTATGGGCGGAAAAACAAAACT 59.657 37.500 0.00 0.00 0.00 2.66
209 226 5.712917 AGTAATGTTCTTATGGGCGGAAAAA 59.287 36.000 0.00 0.00 0.00 1.94
236 257 6.642131 ACTCACATACGTAGTTTCGCTAAAAA 59.358 34.615 0.08 0.00 37.78 1.94
250 271 2.025605 TGGAGGGAGTACTCACATACGT 60.026 50.000 26.59 5.67 39.27 3.57
251 272 2.651455 TGGAGGGAGTACTCACATACG 58.349 52.381 26.59 0.00 39.27 3.06
254 275 2.091830 TCGATGGAGGGAGTACTCACAT 60.092 50.000 26.59 20.68 39.27 3.21
263 284 5.279206 GCCATGTATATATCGATGGAGGGAG 60.279 48.000 20.15 0.00 38.10 4.30
264 285 4.588951 GCCATGTATATATCGATGGAGGGA 59.411 45.833 20.15 0.00 38.10 4.20
265 286 4.262635 GGCCATGTATATATCGATGGAGGG 60.263 50.000 20.15 0.18 38.10 4.30
267 288 5.798125 AGGCCATGTATATATCGATGGAG 57.202 43.478 20.15 3.05 38.10 3.86
269 290 7.386025 CACATTAGGCCATGTATATATCGATGG 59.614 40.741 8.54 14.68 35.51 3.51
271 292 7.928167 CACACATTAGGCCATGTATATATCGAT 59.072 37.037 5.01 2.16 35.51 3.59
272 293 7.093509 ACACACATTAGGCCATGTATATATCGA 60.094 37.037 5.01 0.00 35.51 3.59
274 295 8.792830 AACACACATTAGGCCATGTATATATC 57.207 34.615 5.01 0.00 35.51 1.63
277 298 7.896383 AAAACACACATTAGGCCATGTATAT 57.104 32.000 5.01 0.00 35.51 0.86
279 300 6.210385 TCAAAAACACACATTAGGCCATGTAT 59.790 34.615 5.01 0.00 35.51 2.29
281 302 4.343526 TCAAAAACACACATTAGGCCATGT 59.656 37.500 5.01 3.74 37.93 3.21
283 304 4.832266 TCTCAAAAACACACATTAGGCCAT 59.168 37.500 5.01 0.00 0.00 4.40
284 305 4.211125 TCTCAAAAACACACATTAGGCCA 58.789 39.130 5.01 0.00 0.00 5.36
285 306 4.846779 TCTCAAAAACACACATTAGGCC 57.153 40.909 0.00 0.00 0.00 5.19
286 307 5.119125 GCAATCTCAAAAACACACATTAGGC 59.881 40.000 0.00 0.00 0.00 3.93
287 308 5.634859 GGCAATCTCAAAAACACACATTAGG 59.365 40.000 0.00 0.00 0.00 2.69
288 309 6.449698 AGGCAATCTCAAAAACACACATTAG 58.550 36.000 0.00 0.00 0.00 1.73
289 310 6.403866 AGGCAATCTCAAAAACACACATTA 57.596 33.333 0.00 0.00 0.00 1.90
290 311 5.280654 AGGCAATCTCAAAAACACACATT 57.719 34.783 0.00 0.00 0.00 2.71
291 312 4.942761 AGGCAATCTCAAAAACACACAT 57.057 36.364 0.00 0.00 0.00 3.21
292 313 4.734398 AAGGCAATCTCAAAAACACACA 57.266 36.364 0.00 0.00 0.00 3.72
293 314 5.005682 GTCAAAGGCAATCTCAAAAACACAC 59.994 40.000 0.00 0.00 0.00 3.82
294 315 5.105392 AGTCAAAGGCAATCTCAAAAACACA 60.105 36.000 0.00 0.00 0.00 3.72
295 316 5.351458 AGTCAAAGGCAATCTCAAAAACAC 58.649 37.500 0.00 0.00 0.00 3.32
296 317 5.596836 AGTCAAAGGCAATCTCAAAAACA 57.403 34.783 0.00 0.00 0.00 2.83
297 318 7.867403 TCAATAGTCAAAGGCAATCTCAAAAAC 59.133 33.333 0.00 0.00 0.00 2.43
298 319 7.950512 TCAATAGTCAAAGGCAATCTCAAAAA 58.049 30.769 0.00 0.00 0.00 1.94
299 320 7.523293 TCAATAGTCAAAGGCAATCTCAAAA 57.477 32.000 0.00 0.00 0.00 2.44
300 321 7.707624 ATCAATAGTCAAAGGCAATCTCAAA 57.292 32.000 0.00 0.00 0.00 2.69
301 322 8.806429 TTATCAATAGTCAAAGGCAATCTCAA 57.194 30.769 0.00 0.00 0.00 3.02
302 323 8.267183 TCTTATCAATAGTCAAAGGCAATCTCA 58.733 33.333 0.00 0.00 0.00 3.27
303 324 8.668510 TCTTATCAATAGTCAAAGGCAATCTC 57.331 34.615 0.00 0.00 0.00 2.75
304 325 9.638176 AATCTTATCAATAGTCAAAGGCAATCT 57.362 29.630 0.00 0.00 0.00 2.40
349 370 9.686683 AGCTTCTAATGGTATAGTTTTCACATT 57.313 29.630 0.00 0.00 33.61 2.71
350 371 9.686683 AAGCTTCTAATGGTATAGTTTTCACAT 57.313 29.630 0.00 0.00 0.00 3.21
351 372 9.162764 GAAGCTTCTAATGGTATAGTTTTCACA 57.837 33.333 19.44 0.00 0.00 3.58
352 373 9.384764 AGAAGCTTCTAATGGTATAGTTTTCAC 57.615 33.333 27.47 0.00 35.34 3.18
353 374 9.959721 AAGAAGCTTCTAATGGTATAGTTTTCA 57.040 29.630 28.67 0.00 36.28 2.69
356 377 9.959721 TGAAAGAAGCTTCTAATGGTATAGTTT 57.040 29.630 28.67 14.46 36.28 2.66
357 378 9.384764 GTGAAAGAAGCTTCTAATGGTATAGTT 57.615 33.333 28.67 14.96 36.28 2.24
358 379 7.707035 CGTGAAAGAAGCTTCTAATGGTATAGT 59.293 37.037 28.67 6.77 36.28 2.12
359 380 7.707035 ACGTGAAAGAAGCTTCTAATGGTATAG 59.293 37.037 28.67 15.42 36.28 1.31
360 381 7.553334 ACGTGAAAGAAGCTTCTAATGGTATA 58.447 34.615 28.67 7.53 36.28 1.47
361 382 6.407202 ACGTGAAAGAAGCTTCTAATGGTAT 58.593 36.000 28.67 9.07 36.28 2.73
362 383 5.790593 ACGTGAAAGAAGCTTCTAATGGTA 58.209 37.500 28.67 10.00 36.28 3.25
363 384 4.642429 ACGTGAAAGAAGCTTCTAATGGT 58.358 39.130 28.67 18.84 36.28 3.55
364 385 5.220228 CGTACGTGAAAGAAGCTTCTAATGG 60.220 44.000 28.67 18.26 36.28 3.16
365 386 5.571741 TCGTACGTGAAAGAAGCTTCTAATG 59.428 40.000 28.67 22.13 36.28 1.90
366 387 5.706916 TCGTACGTGAAAGAAGCTTCTAAT 58.293 37.500 28.67 20.22 36.28 1.73
367 388 5.112220 TCGTACGTGAAAGAAGCTTCTAA 57.888 39.130 28.67 14.89 36.28 2.10
368 389 4.754372 TCGTACGTGAAAGAAGCTTCTA 57.246 40.909 28.67 11.40 36.28 2.10
369 390 3.637998 TCGTACGTGAAAGAAGCTTCT 57.362 42.857 23.49 23.49 39.74 2.85
370 391 4.703899 TTTCGTACGTGAAAGAAGCTTC 57.296 40.909 19.11 19.11 33.12 3.86
371 392 5.235616 TCAATTTCGTACGTGAAAGAAGCTT 59.764 36.000 16.05 0.00 40.86 3.74
372 393 4.748102 TCAATTTCGTACGTGAAAGAAGCT 59.252 37.500 16.05 0.00 40.86 3.74
373 394 4.839174 GTCAATTTCGTACGTGAAAGAAGC 59.161 41.667 16.05 0.00 40.86 3.86
374 395 5.064367 CGTCAATTTCGTACGTGAAAGAAG 58.936 41.667 16.05 11.49 40.86 2.85
375 396 4.084952 CCGTCAATTTCGTACGTGAAAGAA 60.085 41.667 16.05 0.00 40.86 2.52
376 397 3.426191 CCGTCAATTTCGTACGTGAAAGA 59.574 43.478 16.05 10.71 40.86 2.52
377 398 3.182972 ACCGTCAATTTCGTACGTGAAAG 59.817 43.478 16.05 8.52 40.86 2.62
378 399 3.122297 ACCGTCAATTTCGTACGTGAAA 58.878 40.909 16.05 9.83 41.69 2.69
379 400 2.741612 ACCGTCAATTTCGTACGTGAA 58.258 42.857 16.05 11.78 34.90 3.18
380 401 2.420628 ACCGTCAATTTCGTACGTGA 57.579 45.000 16.05 8.71 34.90 4.35
381 402 3.540744 GCATACCGTCAATTTCGTACGTG 60.541 47.826 16.05 6.20 34.90 4.49
382 403 2.599973 GCATACCGTCAATTTCGTACGT 59.400 45.455 16.05 0.00 34.90 3.57
383 404 2.855963 AGCATACCGTCAATTTCGTACG 59.144 45.455 9.53 9.53 36.42 3.67
384 405 4.026804 CAGAGCATACCGTCAATTTCGTAC 60.027 45.833 0.00 0.00 0.00 3.67
385 406 4.109766 CAGAGCATACCGTCAATTTCGTA 58.890 43.478 0.00 0.00 0.00 3.43
386 407 2.930040 CAGAGCATACCGTCAATTTCGT 59.070 45.455 0.00 0.00 0.00 3.85
387 408 2.930040 ACAGAGCATACCGTCAATTTCG 59.070 45.455 0.00 0.00 0.00 3.46
388 409 3.684788 ACACAGAGCATACCGTCAATTTC 59.315 43.478 0.00 0.00 0.00 2.17
389 410 3.674997 ACACAGAGCATACCGTCAATTT 58.325 40.909 0.00 0.00 0.00 1.82
390 411 3.334583 ACACAGAGCATACCGTCAATT 57.665 42.857 0.00 0.00 0.00 2.32
391 412 4.081642 AGTTACACAGAGCATACCGTCAAT 60.082 41.667 0.00 0.00 0.00 2.57
392 413 3.257375 AGTTACACAGAGCATACCGTCAA 59.743 43.478 0.00 0.00 0.00 3.18
393 414 2.823747 AGTTACACAGAGCATACCGTCA 59.176 45.455 0.00 0.00 0.00 4.35
394 415 3.505464 AGTTACACAGAGCATACCGTC 57.495 47.619 0.00 0.00 0.00 4.79
395 416 3.585862 CAAGTTACACAGAGCATACCGT 58.414 45.455 0.00 0.00 0.00 4.83
396 417 2.348666 GCAAGTTACACAGAGCATACCG 59.651 50.000 0.00 0.00 0.00 4.02
397 418 3.334691 TGCAAGTTACACAGAGCATACC 58.665 45.455 0.00 0.00 0.00 2.73
398 419 4.393062 ACATGCAAGTTACACAGAGCATAC 59.607 41.667 0.00 0.00 40.38 2.39
399 420 4.578871 ACATGCAAGTTACACAGAGCATA 58.421 39.130 0.00 0.00 40.38 3.14
400 421 3.415212 ACATGCAAGTTACACAGAGCAT 58.585 40.909 0.00 0.00 42.82 3.79
401 422 2.807967 GACATGCAAGTTACACAGAGCA 59.192 45.455 0.00 0.00 36.34 4.26
402 423 2.807967 TGACATGCAAGTTACACAGAGC 59.192 45.455 0.00 0.00 0.00 4.09
403 424 6.915544 ATATGACATGCAAGTTACACAGAG 57.084 37.500 0.00 0.00 0.00 3.35
404 425 8.962884 AATATATGACATGCAAGTTACACAGA 57.037 30.769 0.00 0.00 0.00 3.41
409 430 9.559958 GGCAATAATATATGACATGCAAGTTAC 57.440 33.333 10.44 0.00 34.14 2.50
410 431 8.739039 GGGCAATAATATATGACATGCAAGTTA 58.261 33.333 10.44 0.00 34.14 2.24
411 432 7.452501 AGGGCAATAATATATGACATGCAAGTT 59.547 33.333 10.44 0.00 34.14 2.66
412 433 6.950041 AGGGCAATAATATATGACATGCAAGT 59.050 34.615 10.44 0.00 34.14 3.16
413 434 7.400599 AGGGCAATAATATATGACATGCAAG 57.599 36.000 10.44 0.00 34.14 4.01
414 435 8.739039 GTTAGGGCAATAATATATGACATGCAA 58.261 33.333 10.44 0.00 34.14 4.08
415 436 7.887495 TGTTAGGGCAATAATATATGACATGCA 59.113 33.333 10.44 0.00 34.14 3.96
416 437 8.279970 TGTTAGGGCAATAATATATGACATGC 57.720 34.615 0.00 2.30 0.00 4.06
418 439 9.979897 ACATGTTAGGGCAATAATATATGACAT 57.020 29.630 0.00 0.00 0.00 3.06
427 448 9.695155 ACTTTAACTACATGTTAGGGCAATAAT 57.305 29.630 2.30 0.00 41.55 1.28
428 449 9.523168 AACTTTAACTACATGTTAGGGCAATAA 57.477 29.630 2.30 0.00 41.55 1.40
430 451 9.174166 CTAACTTTAACTACATGTTAGGGCAAT 57.826 33.333 2.30 0.00 41.55 3.56
431 452 7.120138 GCTAACTTTAACTACATGTTAGGGCAA 59.880 37.037 2.30 0.00 41.55 4.52
432 453 6.596497 GCTAACTTTAACTACATGTTAGGGCA 59.404 38.462 2.30 0.00 41.55 5.36
433 454 6.037940 GGCTAACTTTAACTACATGTTAGGGC 59.962 42.308 2.30 0.50 41.55 5.19
434 455 7.336396 AGGCTAACTTTAACTACATGTTAGGG 58.664 38.462 2.30 0.00 41.55 3.53
435 456 9.880157 TTAGGCTAACTTTAACTACATGTTAGG 57.120 33.333 2.30 0.00 41.55 2.69
457 478 9.975218 ATATAGGGCCTAATGTATGTTTTTAGG 57.025 33.333 18.91 4.03 43.17 2.69
463 484 8.938883 CCATCTATATAGGGCCTAATGTATGTT 58.061 37.037 18.91 0.30 0.00 2.71
464 485 8.296906 TCCATCTATATAGGGCCTAATGTATGT 58.703 37.037 18.91 2.34 0.00 2.29
465 486 8.727100 TCCATCTATATAGGGCCTAATGTATG 57.273 38.462 18.91 16.05 0.00 2.39
468 489 8.523864 ACTATCCATCTATATAGGGCCTAATGT 58.476 37.037 18.91 9.02 31.24 2.71
469 490 8.811017 CACTATCCATCTATATAGGGCCTAATG 58.189 40.741 18.91 15.42 31.24 1.90
470 491 7.958583 CCACTATCCATCTATATAGGGCCTAAT 59.041 40.741 18.91 14.19 29.30 1.73
471 492 7.306013 CCACTATCCATCTATATAGGGCCTAA 58.694 42.308 18.91 7.61 29.30 2.69
472 493 6.183361 CCCACTATCCATCTATATAGGGCCTA 60.183 46.154 17.16 17.16 29.30 3.93
473 494 5.401939 CCCACTATCCATCTATATAGGGCCT 60.402 48.000 12.58 12.58 29.30 5.19
474 495 4.841246 CCCACTATCCATCTATATAGGGCC 59.159 50.000 9.89 0.00 29.30 5.80
475 496 5.716979 TCCCACTATCCATCTATATAGGGC 58.283 45.833 9.89 0.00 29.30 5.19
476 497 6.928202 ACTCCCACTATCCATCTATATAGGG 58.072 44.000 9.89 4.49 31.24 3.53
484 505 9.845214 AACTTTATATACTCCCACTATCCATCT 57.155 33.333 0.00 0.00 0.00 2.90
485 506 9.877178 CAACTTTATATACTCCCACTATCCATC 57.123 37.037 0.00 0.00 0.00 3.51
486 507 8.322091 GCAACTTTATATACTCCCACTATCCAT 58.678 37.037 0.00 0.00 0.00 3.41
487 508 7.291416 TGCAACTTTATATACTCCCACTATCCA 59.709 37.037 0.00 0.00 0.00 3.41
488 509 7.676947 TGCAACTTTATATACTCCCACTATCC 58.323 38.462 0.00 0.00 0.00 2.59
489 510 8.585881 TCTGCAACTTTATATACTCCCACTATC 58.414 37.037 0.00 0.00 0.00 2.08
490 511 8.492415 TCTGCAACTTTATATACTCCCACTAT 57.508 34.615 0.00 0.00 0.00 2.12
491 512 7.907841 TCTGCAACTTTATATACTCCCACTA 57.092 36.000 0.00 0.00 0.00 2.74
492 513 6.808321 TCTGCAACTTTATATACTCCCACT 57.192 37.500 0.00 0.00 0.00 4.00
493 514 8.345565 CAATTCTGCAACTTTATATACTCCCAC 58.654 37.037 0.00 0.00 0.00 4.61
494 515 8.052748 ACAATTCTGCAACTTTATATACTCCCA 58.947 33.333 0.00 0.00 0.00 4.37
495 516 8.451908 ACAATTCTGCAACTTTATATACTCCC 57.548 34.615 0.00 0.00 0.00 4.30
530 551 7.153217 GGCGCACCCTATATATAACATTTTT 57.847 36.000 10.83 0.00 0.00 1.94
531 552 6.753107 GGCGCACCCTATATATAACATTTT 57.247 37.500 10.83 0.00 0.00 1.82
563 592 1.135024 CCTGTGCGGATTTTTGGGATG 60.135 52.381 0.00 0.00 33.16 3.51
581 610 9.812347 TGCTGAATGGTTCATATAAATTATCCT 57.188 29.630 0.00 0.00 39.30 3.24
599 628 1.337071 GCTCACCATCCATGCTGAATG 59.663 52.381 0.00 0.00 35.89 2.67
600 629 1.214673 AGCTCACCATCCATGCTGAAT 59.785 47.619 0.00 0.00 32.32 2.57
601 630 0.622136 AGCTCACCATCCATGCTGAA 59.378 50.000 0.00 0.00 32.32 3.02
602 631 1.499368 TAGCTCACCATCCATGCTGA 58.501 50.000 0.00 0.00 35.47 4.26
603 632 2.038689 AGATAGCTCACCATCCATGCTG 59.961 50.000 0.00 0.00 35.47 4.41
605 634 2.038164 TGAGATAGCTCACCATCCATGC 59.962 50.000 6.59 0.00 45.88 4.06
650 679 9.159364 GCATTATCTGTATGATCTTGCTGATTA 57.841 33.333 18.59 12.94 38.79 1.75
675 704 5.536161 TGCCAGATTTATTCCCTTAATGAGC 59.464 40.000 0.00 0.00 0.00 4.26
676 705 7.587037 TTGCCAGATTTATTCCCTTAATGAG 57.413 36.000 0.00 0.00 0.00 2.90
711 740 7.179966 TCTCCTCCCTTTTATTTTCTTAACCC 58.820 38.462 0.00 0.00 0.00 4.11
723 754 4.355588 TCCCACATTTTCTCCTCCCTTTTA 59.644 41.667 0.00 0.00 0.00 1.52
803 843 0.916358 CTTCTGGGGGATGGTGGACT 60.916 60.000 0.00 0.00 0.00 3.85
879 919 4.371417 CATGTGGGGCCAGGTGCT 62.371 66.667 4.39 0.00 40.92 4.40
880 920 4.684134 ACATGTGGGGCCAGGTGC 62.684 66.667 4.39 0.00 40.16 5.01
883 923 1.000739 AATGACATGTGGGGCCAGG 59.999 57.895 1.15 0.00 0.00 4.45
884 924 1.324740 CCAATGACATGTGGGGCCAG 61.325 60.000 1.15 0.00 0.00 4.85
885 925 1.305129 CCAATGACATGTGGGGCCA 60.305 57.895 1.15 0.00 0.00 5.36
907 947 2.449031 TACAAGCCTCACTGCCCACG 62.449 60.000 0.00 0.00 0.00 4.94
909 949 0.035152 CATACAAGCCTCACTGCCCA 60.035 55.000 0.00 0.00 0.00 5.36
913 953 0.108186 TCCGCATACAAGCCTCACTG 60.108 55.000 0.00 0.00 0.00 3.66
923 963 4.175337 GGGGCAGCTCCGCATACA 62.175 66.667 0.00 0.00 46.30 2.29
1053 1102 3.491598 CTCGTGGTGGGCTTTGGGT 62.492 63.158 0.00 0.00 0.00 4.51
1079 1128 4.899239 GGCAGCCATCCTCGTCGG 62.899 72.222 6.55 0.00 0.00 4.79
1300 1358 2.097038 CAGCTTGGAGAGGAACGCG 61.097 63.158 3.53 3.53 0.00 6.01
1657 1715 0.889638 ACGACACGCTGAAGGAGAGA 60.890 55.000 0.00 0.00 0.00 3.10
1774 1832 3.461773 TAGAGTGCCAGCCCGAGC 61.462 66.667 0.00 0.00 40.32 5.03
1954 2012 1.296715 CGACCCCTTCTTGTCCCTG 59.703 63.158 0.00 0.00 0.00 4.45
2326 2387 0.622665 CTGCTCAGAAGGAATGGGGT 59.377 55.000 0.00 0.00 0.00 4.95
2526 2614 5.371526 TGACACATTCTCTTTTCTCTGCTT 58.628 37.500 0.00 0.00 0.00 3.91
2535 2623 5.824624 ACAGAACACATGACACATTCTCTTT 59.175 36.000 0.00 0.00 0.00 2.52
2548 2636 5.756195 TTCCTCTTTCAACAGAACACATG 57.244 39.130 0.00 0.00 0.00 3.21
2551 2639 5.949735 TGTTTTCCTCTTTCAACAGAACAC 58.050 37.500 0.00 0.00 0.00 3.32
2573 2663 6.072783 GGAGACAAATCCTTGACTTCTTCTTG 60.073 42.308 0.00 0.00 37.62 3.02
2579 2669 4.021102 TGGGAGACAAATCCTTGACTTC 57.979 45.455 0.00 0.00 37.62 3.01
2617 2712 6.860080 TCTGCAATCTTTGAATCATTCTTCC 58.140 36.000 0.00 0.00 0.00 3.46
2626 2725 7.386848 CCAAGACAAATTCTGCAATCTTTGAAT 59.613 33.333 16.84 6.25 33.46 2.57
2649 2748 3.330267 GTGCAAACACAAAAGGAACCAA 58.670 40.909 0.00 0.00 46.61 3.67
2650 2749 2.966050 GTGCAAACACAAAAGGAACCA 58.034 42.857 0.00 0.00 46.61 3.67
2677 2820 5.013495 AGGAACTTTGGTCATCTGATCAGAA 59.987 40.000 28.40 11.27 36.54 3.02
2684 2827 3.341823 CAGGAGGAACTTTGGTCATCTG 58.658 50.000 0.00 0.00 41.55 2.90
2689 2832 1.064825 TCCCAGGAGGAACTTTGGTC 58.935 55.000 0.00 0.00 43.78 4.02
2718 2862 7.523293 TTGGAAGTTGCAGAGATGAAATTAA 57.477 32.000 0.00 0.00 0.00 1.40
2752 2900 7.771927 ACTTTGGTCATCTGAATCTTGAATT 57.228 32.000 0.00 0.00 0.00 2.17
2753 2901 7.771927 AACTTTGGTCATCTGAATCTTGAAT 57.228 32.000 0.00 0.00 0.00 2.57
2793 3056 2.639347 TCCAGATTCCTCAAACAGCTGA 59.361 45.455 23.35 0.00 0.00 4.26
2811 3074 4.437682 AACTTTTGGTCATCTGAGTCCA 57.562 40.909 0.00 0.00 0.00 4.02
2815 3078 4.262164 CCCCAAAACTTTTGGTCATCTGAG 60.262 45.833 25.28 11.74 37.88 3.35
2899 3168 5.242393 CACCAACTTGATCCATCTTTGTCTT 59.758 40.000 0.00 0.00 0.00 3.01
2910 3179 2.046285 CCGGCCACCAACTTGATCC 61.046 63.158 2.24 0.00 0.00 3.36
2927 3196 3.328050 TCCTCTTTTCTCCAAGGACTTCC 59.672 47.826 0.00 0.00 33.00 3.46
3017 3296 4.260170 GCCATTCAAATCTCTGTCTGTCT 58.740 43.478 0.00 0.00 0.00 3.41
3018 3297 3.376546 GGCCATTCAAATCTCTGTCTGTC 59.623 47.826 0.00 0.00 0.00 3.51
3019 3298 3.245016 TGGCCATTCAAATCTCTGTCTGT 60.245 43.478 0.00 0.00 0.00 3.41
3020 3299 3.349927 TGGCCATTCAAATCTCTGTCTG 58.650 45.455 0.00 0.00 0.00 3.51
3051 3330 1.064017 AGAAAGGGACAAAGTGCCACA 60.064 47.619 10.34 0.00 46.69 4.17
3067 3388 7.361713 CCGAGTTGAATAGTATGGCAAAAGAAA 60.362 37.037 0.00 0.00 0.00 2.52
3068 3389 6.093495 CCGAGTTGAATAGTATGGCAAAAGAA 59.907 38.462 0.00 0.00 0.00 2.52
3069 3390 5.584649 CCGAGTTGAATAGTATGGCAAAAGA 59.415 40.000 0.00 0.00 0.00 2.52
3070 3391 5.730568 GCCGAGTTGAATAGTATGGCAAAAG 60.731 44.000 0.00 0.00 40.88 2.27
3071 3392 4.095782 GCCGAGTTGAATAGTATGGCAAAA 59.904 41.667 0.00 0.00 40.88 2.44
3112 3433 7.831690 TGAGATTAGTCATAGAATAGAGCCGAT 59.168 37.037 0.00 0.00 0.00 4.18
3113 3434 7.119992 GTGAGATTAGTCATAGAATAGAGCCGA 59.880 40.741 0.00 0.00 0.00 5.54
3114 3435 7.094592 TGTGAGATTAGTCATAGAATAGAGCCG 60.095 40.741 0.00 0.00 0.00 5.52
3115 3436 8.116651 TGTGAGATTAGTCATAGAATAGAGCC 57.883 38.462 0.00 0.00 0.00 4.70
3141 3462 1.468736 GCAGTGCAGCTTTAGGATTGC 60.469 52.381 11.09 0.00 33.51 3.56
3157 3478 4.624125 GCAATACTTAACTCAGGAGGCAGT 60.624 45.833 0.83 2.57 0.00 4.40
3158 3479 3.873952 GCAATACTTAACTCAGGAGGCAG 59.126 47.826 0.83 0.00 0.00 4.85
3159 3480 3.519510 AGCAATACTTAACTCAGGAGGCA 59.480 43.478 0.83 0.00 0.00 4.75
3160 3481 4.143986 AGCAATACTTAACTCAGGAGGC 57.856 45.455 0.83 0.00 0.00 4.70
3161 3482 6.758886 CAGTAAGCAATACTTAACTCAGGAGG 59.241 42.308 0.83 0.00 42.31 4.30
3162 3483 7.324178 ACAGTAAGCAATACTTAACTCAGGAG 58.676 38.462 0.00 0.00 42.31 3.69
3163 3484 7.241042 ACAGTAAGCAATACTTAACTCAGGA 57.759 36.000 0.00 0.00 42.31 3.86
3164 3485 9.601217 AATACAGTAAGCAATACTTAACTCAGG 57.399 33.333 0.00 0.00 42.31 3.86
3326 3647 2.159338 CCAGCACAATGAAATCCCTTCG 60.159 50.000 0.00 0.00 36.78 3.79
3347 3674 4.275936 GCCATCAGTACATGGGTCAAATAC 59.724 45.833 12.77 0.00 43.42 1.89
3379 3706 3.658709 ACAAGAAGCTAAGTGCAGAGAC 58.341 45.455 0.00 0.00 45.94 3.36
3407 3734 7.555914 TGGCTTAAGTCTAATTGCACATAATCA 59.444 33.333 8.83 0.00 0.00 2.57
3419 3746 6.612049 ACCTAGCTAACTGGCTTAAGTCTAAT 59.388 38.462 8.83 0.00 42.97 1.73


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.