Multiple sequence alignment - TraesCS6D01G029800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G029800 chr6D 100.000 1435 0 0 985 2419 11695360 11693926 0.000000e+00 2651
1 TraesCS6D01G029800 chr6D 100.000 659 0 0 1 659 11696344 11695686 0.000000e+00 1218
2 TraesCS6D01G029800 chr6D 93.939 660 35 3 1 659 56319793 56320448 0.000000e+00 992
3 TraesCS6D01G029800 chr6D 91.364 220 16 2 2126 2342 11727240 11727459 5.060000e-77 298
4 TraesCS6D01G029800 chr6D 100.000 59 0 0 2361 2419 140155237 140155295 2.540000e-20 110
5 TraesCS6D01G029800 chr5D 94.717 795 27 1 985 1764 353958245 353959039 0.000000e+00 1221
6 TraesCS6D01G029800 chr5D 93.476 797 34 3 985 1766 39090761 39091554 0.000000e+00 1168
7 TraesCS6D01G029800 chr5D 91.667 792 40 3 985 1761 391995829 391996609 0.000000e+00 1074
8 TraesCS6D01G029800 chr4D 93.844 796 34 2 985 1765 39368859 39368064 0.000000e+00 1184
9 TraesCS6D01G029800 chr4D 92.947 794 38 4 985 1763 460661919 460661129 0.000000e+00 1140
10 TraesCS6D01G029800 chr4D 95.758 660 24 2 1 659 460669774 460669118 0.000000e+00 1061
11 TraesCS6D01G029800 chr4D 92.785 693 33 3 985 1661 487078709 487078018 0.000000e+00 987
12 TraesCS6D01G029800 chr4D 92.566 565 25 3 1213 1763 460660425 460659864 0.000000e+00 795
13 TraesCS6D01G029800 chr4D 98.305 59 1 0 2361 2419 4080912 4080970 1.180000e-18 104
14 TraesCS6D01G029800 chr4D 98.305 59 1 0 2361 2419 45643455 45643397 1.180000e-18 104
15 TraesCS6D01G029800 chr4D 98.305 59 1 0 2361 2419 77042683 77042741 1.180000e-18 104
16 TraesCS6D01G029800 chr4D 98.305 59 1 0 2361 2419 277701709 277701767 1.180000e-18 104
17 TraesCS6D01G029800 chr4D 98.305 59 1 0 2361 2419 319893839 319893897 1.180000e-18 104
18 TraesCS6D01G029800 chr1D 93.199 794 39 2 985 1763 481926492 481927285 0.000000e+00 1153
19 TraesCS6D01G029800 chr1D 95.865 653 26 1 1 653 467505028 467505679 0.000000e+00 1055
20 TraesCS6D01G029800 chr1D 100.000 59 0 0 2361 2419 452533773 452533715 2.540000e-20 110
21 TraesCS6D01G029800 chrUn 93.082 795 40 2 985 1764 32169696 32168902 0.000000e+00 1149
22 TraesCS6D01G029800 chrUn 98.305 59 1 0 2361 2419 79074460 79074518 1.180000e-18 104
23 TraesCS6D01G029800 chr7D 93.199 794 35 5 985 1762 474490528 474489738 0.000000e+00 1149
24 TraesCS6D01G029800 chr7D 93.797 661 39 2 1 659 501629750 501630410 0.000000e+00 992
25 TraesCS6D01G029800 chr7D 92.199 705 39 2 1081 1770 626191547 626192250 0.000000e+00 983
26 TraesCS6D01G029800 chr2D 92.579 795 43 2 985 1763 646799188 646798394 0.000000e+00 1127
27 TraesCS6D01G029800 chr2D 88.329 814 44 21 985 1766 88300383 88301177 0.000000e+00 929
28 TraesCS6D01G029800 chr2D 100.000 59 0 0 2361 2419 151436568 151436626 2.540000e-20 110
29 TraesCS6D01G029800 chr6B 91.294 804 43 9 985 1769 618935364 618936159 0.000000e+00 1072
30 TraesCS6D01G029800 chr6B 95.806 453 17 2 1 451 149421352 149420900 0.000000e+00 730
31 TraesCS6D01G029800 chr6B 87.102 597 50 20 1763 2342 21332588 21333174 0.000000e+00 651
32 TraesCS6D01G029800 chr7A 94.872 663 30 2 1 659 25850783 25851445 0.000000e+00 1033
33 TraesCS6D01G029800 chr3A 94.260 662 34 4 1 659 145634202 145634862 0.000000e+00 1009
34 TraesCS6D01G029800 chr3A 93.958 662 37 2 1 659 598875133 598874472 0.000000e+00 998
35 TraesCS6D01G029800 chr1B 90.658 760 56 11 987 1740 566610683 566611433 0.000000e+00 996
36 TraesCS6D01G029800 chr5A 93.192 661 41 3 1 657 312259976 312259316 0.000000e+00 968
37 TraesCS6D01G029800 chr7B 89.141 792 65 15 985 1770 483868672 483867896 0.000000e+00 966
38 TraesCS6D01G029800 chr3D 92.121 660 32 3 1 659 55164090 55164730 0.000000e+00 913
39 TraesCS6D01G029800 chr6A 83.936 498 40 21 1763 2241 12982525 12983001 7.940000e-120 440


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G029800 chr6D 11693926 11696344 2418 True 1934.5 2651 100.0000 1 2419 2 chr6D.!!$R1 2418
1 TraesCS6D01G029800 chr6D 56319793 56320448 655 False 992.0 992 93.9390 1 659 1 chr6D.!!$F2 658
2 TraesCS6D01G029800 chr5D 353958245 353959039 794 False 1221.0 1221 94.7170 985 1764 1 chr5D.!!$F2 779
3 TraesCS6D01G029800 chr5D 39090761 39091554 793 False 1168.0 1168 93.4760 985 1766 1 chr5D.!!$F1 781
4 TraesCS6D01G029800 chr5D 391995829 391996609 780 False 1074.0 1074 91.6670 985 1761 1 chr5D.!!$F3 776
5 TraesCS6D01G029800 chr4D 39368064 39368859 795 True 1184.0 1184 93.8440 985 1765 1 chr4D.!!$R1 780
6 TraesCS6D01G029800 chr4D 460669118 460669774 656 True 1061.0 1061 95.7580 1 659 1 chr4D.!!$R3 658
7 TraesCS6D01G029800 chr4D 487078018 487078709 691 True 987.0 987 92.7850 985 1661 1 chr4D.!!$R4 676
8 TraesCS6D01G029800 chr4D 460659864 460661919 2055 True 967.5 1140 92.7565 985 1763 2 chr4D.!!$R5 778
9 TraesCS6D01G029800 chr1D 481926492 481927285 793 False 1153.0 1153 93.1990 985 1763 1 chr1D.!!$F2 778
10 TraesCS6D01G029800 chr1D 467505028 467505679 651 False 1055.0 1055 95.8650 1 653 1 chr1D.!!$F1 652
11 TraesCS6D01G029800 chrUn 32168902 32169696 794 True 1149.0 1149 93.0820 985 1764 1 chrUn.!!$R1 779
12 TraesCS6D01G029800 chr7D 474489738 474490528 790 True 1149.0 1149 93.1990 985 1762 1 chr7D.!!$R1 777
13 TraesCS6D01G029800 chr7D 501629750 501630410 660 False 992.0 992 93.7970 1 659 1 chr7D.!!$F1 658
14 TraesCS6D01G029800 chr7D 626191547 626192250 703 False 983.0 983 92.1990 1081 1770 1 chr7D.!!$F2 689
15 TraesCS6D01G029800 chr2D 646798394 646799188 794 True 1127.0 1127 92.5790 985 1763 1 chr2D.!!$R1 778
16 TraesCS6D01G029800 chr2D 88300383 88301177 794 False 929.0 929 88.3290 985 1766 1 chr2D.!!$F1 781
17 TraesCS6D01G029800 chr6B 618935364 618936159 795 False 1072.0 1072 91.2940 985 1769 1 chr6B.!!$F2 784
18 TraesCS6D01G029800 chr6B 21332588 21333174 586 False 651.0 651 87.1020 1763 2342 1 chr6B.!!$F1 579
19 TraesCS6D01G029800 chr7A 25850783 25851445 662 False 1033.0 1033 94.8720 1 659 1 chr7A.!!$F1 658
20 TraesCS6D01G029800 chr3A 145634202 145634862 660 False 1009.0 1009 94.2600 1 659 1 chr3A.!!$F1 658
21 TraesCS6D01G029800 chr3A 598874472 598875133 661 True 998.0 998 93.9580 1 659 1 chr3A.!!$R1 658
22 TraesCS6D01G029800 chr1B 566610683 566611433 750 False 996.0 996 90.6580 987 1740 1 chr1B.!!$F1 753
23 TraesCS6D01G029800 chr5A 312259316 312259976 660 True 968.0 968 93.1920 1 657 1 chr5A.!!$R1 656
24 TraesCS6D01G029800 chr7B 483867896 483868672 776 True 966.0 966 89.1410 985 1770 1 chr7B.!!$R1 785
25 TraesCS6D01G029800 chr3D 55164090 55164730 640 False 913.0 913 92.1210 1 659 1 chr3D.!!$F1 658

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
347 348 0.041833 TGAGAGAAGAGAGGGGTGGG 59.958 60.0 0.0 0.0 0.0 4.61 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2392 3982 0.242825 CCGCGTGTATATCCGGACAT 59.757 55.0 6.12 2.01 43.2 3.06 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 3.921677 TCTTTCTCCGTTTAGCATCGTT 58.078 40.909 0.00 0.00 0.00 3.85
153 154 2.912967 GCACTGCATTTGATTCGTTCTG 59.087 45.455 0.00 0.00 0.00 3.02
184 185 1.153549 GGAGCCGAAGTTCGAGCAT 60.154 57.895 28.36 18.58 43.74 3.79
344 345 1.431243 ACAGTGAGAGAAGAGAGGGGT 59.569 52.381 0.00 0.00 0.00 4.95
345 346 1.824230 CAGTGAGAGAAGAGAGGGGTG 59.176 57.143 0.00 0.00 0.00 4.61
347 348 0.041833 TGAGAGAAGAGAGGGGTGGG 59.958 60.000 0.00 0.00 0.00 4.61
348 349 0.041982 GAGAGAAGAGAGGGGTGGGT 59.958 60.000 0.00 0.00 0.00 4.51
349 350 1.288335 GAGAGAAGAGAGGGGTGGGTA 59.712 57.143 0.00 0.00 0.00 3.69
350 351 1.722851 AGAGAAGAGAGGGGTGGGTAA 59.277 52.381 0.00 0.00 0.00 2.85
351 352 2.112190 GAGAAGAGAGGGGTGGGTAAG 58.888 57.143 0.00 0.00 0.00 2.34
384 385 4.499472 CAGGGTGAGTAAATATAGGGGGA 58.501 47.826 0.00 0.00 0.00 4.81
385 386 5.101529 CAGGGTGAGTAAATATAGGGGGAT 58.898 45.833 0.00 0.00 0.00 3.85
386 387 5.045578 CAGGGTGAGTAAATATAGGGGGATG 60.046 48.000 0.00 0.00 0.00 3.51
387 388 4.227527 GGGTGAGTAAATATAGGGGGATGG 59.772 50.000 0.00 0.00 0.00 3.51
388 389 4.227527 GGTGAGTAAATATAGGGGGATGGG 59.772 50.000 0.00 0.00 0.00 4.00
389 390 4.227527 GTGAGTAAATATAGGGGGATGGGG 59.772 50.000 0.00 0.00 0.00 4.96
390 391 4.112260 TGAGTAAATATAGGGGGATGGGGA 59.888 45.833 0.00 0.00 0.00 4.81
391 392 4.711055 AGTAAATATAGGGGGATGGGGAG 58.289 47.826 0.00 0.00 0.00 4.30
392 393 2.688217 AATATAGGGGGATGGGGAGG 57.312 55.000 0.00 0.00 0.00 4.30
393 394 1.814037 ATATAGGGGGATGGGGAGGA 58.186 55.000 0.00 0.00 0.00 3.71
394 395 1.102066 TATAGGGGGATGGGGAGGAG 58.898 60.000 0.00 0.00 0.00 3.69
395 396 1.766075 ATAGGGGGATGGGGAGGAGG 61.766 65.000 0.00 0.00 0.00 4.30
396 397 2.931629 TAGGGGGATGGGGAGGAGGA 62.932 65.000 0.00 0.00 0.00 3.71
397 398 2.122189 GGGGATGGGGAGGAGGAG 60.122 72.222 0.00 0.00 0.00 3.69
398 399 2.727071 GGGGATGGGGAGGAGGAGA 61.727 68.421 0.00 0.00 0.00 3.71
399 400 1.318380 GGGATGGGGAGGAGGAGAA 59.682 63.158 0.00 0.00 0.00 2.87
400 401 0.766288 GGGATGGGGAGGAGGAGAAG 60.766 65.000 0.00 0.00 0.00 2.85
401 402 0.266152 GGATGGGGAGGAGGAGAAGA 59.734 60.000 0.00 0.00 0.00 2.87
402 403 1.715785 GATGGGGAGGAGGAGAAGAG 58.284 60.000 0.00 0.00 0.00 2.85
403 404 1.022903 ATGGGGAGGAGGAGAAGAGT 58.977 55.000 0.00 0.00 0.00 3.24
404 405 0.041833 TGGGGAGGAGGAGAAGAGTG 59.958 60.000 0.00 0.00 0.00 3.51
405 406 0.689412 GGGGAGGAGGAGAAGAGTGG 60.689 65.000 0.00 0.00 0.00 4.00
406 407 1.334384 GGGAGGAGGAGAAGAGTGGC 61.334 65.000 0.00 0.00 0.00 5.01
407 408 0.616111 GGAGGAGGAGAAGAGTGGCA 60.616 60.000 0.00 0.00 0.00 4.92
408 409 0.823460 GAGGAGGAGAAGAGTGGCAG 59.177 60.000 0.00 0.00 0.00 4.85
409 410 0.116143 AGGAGGAGAAGAGTGGCAGT 59.884 55.000 0.00 0.00 0.00 4.40
410 411 0.534873 GGAGGAGAAGAGTGGCAGTC 59.465 60.000 14.56 14.56 0.00 3.51
411 412 1.261480 GAGGAGAAGAGTGGCAGTCA 58.739 55.000 23.46 0.00 0.00 3.41
412 413 1.830477 GAGGAGAAGAGTGGCAGTCAT 59.170 52.381 23.46 12.58 0.00 3.06
413 414 1.554160 AGGAGAAGAGTGGCAGTCATG 59.446 52.381 23.46 0.00 0.00 3.07
414 415 1.277557 GGAGAAGAGTGGCAGTCATGT 59.722 52.381 23.46 10.99 0.00 3.21
415 416 2.289945 GGAGAAGAGTGGCAGTCATGTT 60.290 50.000 23.46 9.81 0.00 2.71
416 417 2.740981 GAGAAGAGTGGCAGTCATGTTG 59.259 50.000 23.46 0.00 0.00 3.33
417 418 2.105477 AGAAGAGTGGCAGTCATGTTGT 59.895 45.455 23.46 5.93 0.00 3.32
418 419 2.645838 AGAGTGGCAGTCATGTTGTT 57.354 45.000 23.46 0.00 0.00 2.83
419 420 2.936202 AGAGTGGCAGTCATGTTGTTT 58.064 42.857 23.46 0.00 0.00 2.83
420 421 3.290710 AGAGTGGCAGTCATGTTGTTTT 58.709 40.909 23.46 0.00 0.00 2.43
421 422 4.460263 AGAGTGGCAGTCATGTTGTTTTA 58.540 39.130 23.46 0.00 0.00 1.52
422 423 4.887071 AGAGTGGCAGTCATGTTGTTTTAA 59.113 37.500 23.46 0.00 0.00 1.52
423 424 4.932146 AGTGGCAGTCATGTTGTTTTAAC 58.068 39.130 0.00 0.00 0.00 2.01
424 425 4.644685 AGTGGCAGTCATGTTGTTTTAACT 59.355 37.500 0.00 0.00 0.00 2.24
425 426 5.825679 AGTGGCAGTCATGTTGTTTTAACTA 59.174 36.000 0.00 0.00 0.00 2.24
426 427 5.912955 GTGGCAGTCATGTTGTTTTAACTAC 59.087 40.000 0.00 1.12 35.64 2.73
427 428 5.590663 TGGCAGTCATGTTGTTTTAACTACA 59.409 36.000 11.22 11.22 45.70 2.74
437 438 8.988064 TGTTGTTTTAACTACATGCTTTTCAA 57.012 26.923 5.92 0.00 39.16 2.69
438 439 9.593134 TGTTGTTTTAACTACATGCTTTTCAAT 57.407 25.926 5.92 0.00 39.16 2.57
443 444 8.980143 TTTAACTACATGCTTTTCAATTAGCC 57.020 30.769 0.00 0.00 36.56 3.93
444 445 6.588719 AACTACATGCTTTTCAATTAGCCA 57.411 33.333 0.00 0.00 36.56 4.75
445 446 6.780457 ACTACATGCTTTTCAATTAGCCAT 57.220 33.333 0.00 0.00 36.56 4.40
446 447 6.567050 ACTACATGCTTTTCAATTAGCCATG 58.433 36.000 0.00 0.00 36.56 3.66
447 448 5.664294 ACATGCTTTTCAATTAGCCATGA 57.336 34.783 12.96 0.00 36.56 3.07
448 449 6.040209 ACATGCTTTTCAATTAGCCATGAA 57.960 33.333 12.96 0.00 36.56 2.57
449 450 5.870978 ACATGCTTTTCAATTAGCCATGAAC 59.129 36.000 12.96 0.00 35.42 3.18
450 451 5.726980 TGCTTTTCAATTAGCCATGAACT 57.273 34.783 0.00 0.00 35.42 3.01
451 452 5.472148 TGCTTTTCAATTAGCCATGAACTG 58.528 37.500 0.00 0.00 35.42 3.16
452 453 4.328169 GCTTTTCAATTAGCCATGAACTGC 59.672 41.667 0.00 0.00 35.42 4.40
453 454 5.717119 CTTTTCAATTAGCCATGAACTGCT 58.283 37.500 0.00 0.00 41.57 4.24
454 455 4.970662 TTCAATTAGCCATGAACTGCTC 57.029 40.909 0.00 0.00 39.00 4.26
455 456 4.226427 TCAATTAGCCATGAACTGCTCT 57.774 40.909 0.00 0.00 39.00 4.09
456 457 4.592942 TCAATTAGCCATGAACTGCTCTT 58.407 39.130 0.00 0.00 39.00 2.85
457 458 4.637534 TCAATTAGCCATGAACTGCTCTTC 59.362 41.667 0.00 0.00 39.00 2.87
458 459 3.701205 TTAGCCATGAACTGCTCTTCA 57.299 42.857 0.00 0.00 39.00 3.02
459 460 2.574006 AGCCATGAACTGCTCTTCAA 57.426 45.000 0.00 0.00 33.85 2.69
460 461 3.083122 AGCCATGAACTGCTCTTCAAT 57.917 42.857 0.00 0.00 33.85 2.57
461 462 3.428532 AGCCATGAACTGCTCTTCAATT 58.571 40.909 0.00 0.00 33.85 2.32
462 463 4.592942 AGCCATGAACTGCTCTTCAATTA 58.407 39.130 0.00 0.00 33.85 1.40
463 464 4.639310 AGCCATGAACTGCTCTTCAATTAG 59.361 41.667 0.00 0.00 33.85 1.73
464 465 4.732938 GCCATGAACTGCTCTTCAATTAGC 60.733 45.833 0.00 0.00 39.25 3.09
465 466 4.201990 CCATGAACTGCTCTTCAATTAGCC 60.202 45.833 0.00 0.00 37.97 3.93
466 467 4.019792 TGAACTGCTCTTCAATTAGCCA 57.980 40.909 0.00 0.00 37.97 4.75
467 468 4.592942 TGAACTGCTCTTCAATTAGCCAT 58.407 39.130 0.00 0.00 37.97 4.40
468 469 4.397103 TGAACTGCTCTTCAATTAGCCATG 59.603 41.667 0.00 0.00 37.97 3.66
469 470 4.226427 ACTGCTCTTCAATTAGCCATGA 57.774 40.909 0.00 0.00 37.97 3.07
470 471 4.592942 ACTGCTCTTCAATTAGCCATGAA 58.407 39.130 0.00 0.00 37.97 2.57
471 472 4.397417 ACTGCTCTTCAATTAGCCATGAAC 59.603 41.667 0.00 0.00 37.97 3.18
472 473 4.592942 TGCTCTTCAATTAGCCATGAACT 58.407 39.130 0.00 0.00 37.97 3.01
473 474 4.637534 TGCTCTTCAATTAGCCATGAACTC 59.362 41.667 0.00 0.00 37.97 3.01
474 475 4.880696 GCTCTTCAATTAGCCATGAACTCT 59.119 41.667 0.00 0.00 32.46 3.24
475 476 5.220815 GCTCTTCAATTAGCCATGAACTCTG 60.221 44.000 0.00 0.00 32.46 3.35
476 477 5.809001 TCTTCAATTAGCCATGAACTCTGT 58.191 37.500 0.00 0.00 32.46 3.41
477 478 5.645067 TCTTCAATTAGCCATGAACTCTGTG 59.355 40.000 0.00 0.00 32.46 3.66
478 479 4.910195 TCAATTAGCCATGAACTCTGTGT 58.090 39.130 0.00 0.00 0.00 3.72
479 480 5.316167 TCAATTAGCCATGAACTCTGTGTT 58.684 37.500 0.00 0.00 42.38 3.32
480 481 5.181811 TCAATTAGCCATGAACTCTGTGTTG 59.818 40.000 0.00 0.00 39.30 3.33
481 482 2.645838 AGCCATGAACTCTGTGTTGT 57.354 45.000 0.00 0.00 39.30 3.32
482 483 2.224606 AGCCATGAACTCTGTGTTGTG 58.775 47.619 0.00 0.00 39.30 3.33
483 484 1.335324 GCCATGAACTCTGTGTTGTGC 60.335 52.381 0.00 0.00 39.30 4.57
484 485 2.224606 CCATGAACTCTGTGTTGTGCT 58.775 47.619 0.00 0.00 39.30 4.40
485 486 2.620115 CCATGAACTCTGTGTTGTGCTT 59.380 45.455 0.00 0.00 39.30 3.91
486 487 3.549423 CCATGAACTCTGTGTTGTGCTTG 60.549 47.826 0.00 0.00 39.30 4.01
487 488 2.984562 TGAACTCTGTGTTGTGCTTGA 58.015 42.857 0.00 0.00 39.30 3.02
488 489 2.677836 TGAACTCTGTGTTGTGCTTGAC 59.322 45.455 0.00 0.00 39.30 3.18
489 490 2.698855 ACTCTGTGTTGTGCTTGACT 57.301 45.000 0.00 0.00 0.00 3.41
490 491 2.991250 ACTCTGTGTTGTGCTTGACTT 58.009 42.857 0.00 0.00 0.00 3.01
491 492 2.939103 ACTCTGTGTTGTGCTTGACTTC 59.061 45.455 0.00 0.00 0.00 3.01
492 493 2.938451 CTCTGTGTTGTGCTTGACTTCA 59.062 45.455 0.00 0.00 0.00 3.02
493 494 3.544684 TCTGTGTTGTGCTTGACTTCAT 58.455 40.909 0.00 0.00 0.00 2.57
494 495 3.313249 TCTGTGTTGTGCTTGACTTCATG 59.687 43.478 0.00 0.00 0.00 3.07
495 496 3.277715 TGTGTTGTGCTTGACTTCATGA 58.722 40.909 0.00 0.00 0.00 3.07
496 497 3.693578 TGTGTTGTGCTTGACTTCATGAA 59.306 39.130 8.12 8.12 0.00 2.57
497 498 4.338964 TGTGTTGTGCTTGACTTCATGAAT 59.661 37.500 8.96 0.00 0.00 2.57
498 499 5.163530 TGTGTTGTGCTTGACTTCATGAATT 60.164 36.000 8.96 2.75 0.00 2.17
499 500 5.174398 GTGTTGTGCTTGACTTCATGAATTG 59.826 40.000 8.96 0.48 0.00 2.32
500 501 5.163530 TGTTGTGCTTGACTTCATGAATTGT 60.164 36.000 8.96 4.17 0.00 2.71
501 502 4.862350 TGTGCTTGACTTCATGAATTGTG 58.138 39.130 8.96 0.00 0.00 3.33
502 503 4.338964 TGTGCTTGACTTCATGAATTGTGT 59.661 37.500 8.96 2.97 0.00 3.72
503 504 4.678287 GTGCTTGACTTCATGAATTGTGTG 59.322 41.667 8.96 0.00 0.00 3.82
504 505 3.671928 GCTTGACTTCATGAATTGTGTGC 59.328 43.478 8.96 6.21 0.00 4.57
505 506 4.793678 GCTTGACTTCATGAATTGTGTGCA 60.794 41.667 8.96 1.96 0.00 4.57
506 507 4.492791 TGACTTCATGAATTGTGTGCAG 57.507 40.909 8.96 0.00 0.00 4.41
507 508 4.136051 TGACTTCATGAATTGTGTGCAGA 58.864 39.130 8.96 0.00 0.00 4.26
508 509 4.763279 TGACTTCATGAATTGTGTGCAGAT 59.237 37.500 8.96 0.00 0.00 2.90
509 510 5.106436 TGACTTCATGAATTGTGTGCAGATC 60.106 40.000 8.96 0.00 0.00 2.75
510 511 4.142752 ACTTCATGAATTGTGTGCAGATCG 60.143 41.667 8.96 0.00 0.00 3.69
511 512 3.598299 TCATGAATTGTGTGCAGATCGA 58.402 40.909 0.00 0.00 0.00 3.59
512 513 3.619929 TCATGAATTGTGTGCAGATCGAG 59.380 43.478 0.00 0.00 0.00 4.04
513 514 2.349590 TGAATTGTGTGCAGATCGAGG 58.650 47.619 0.00 0.00 0.00 4.63
514 515 2.028203 TGAATTGTGTGCAGATCGAGGA 60.028 45.455 0.00 0.00 0.00 3.71
515 516 2.306341 ATTGTGTGCAGATCGAGGAG 57.694 50.000 0.00 0.00 0.00 3.69
516 517 1.256812 TTGTGTGCAGATCGAGGAGA 58.743 50.000 0.00 0.00 0.00 3.71
517 518 0.813821 TGTGTGCAGATCGAGGAGAG 59.186 55.000 0.00 0.00 0.00 3.20
518 519 0.814457 GTGTGCAGATCGAGGAGAGT 59.186 55.000 0.00 0.00 0.00 3.24
519 520 2.017782 GTGTGCAGATCGAGGAGAGTA 58.982 52.381 0.00 0.00 0.00 2.59
520 521 2.423892 GTGTGCAGATCGAGGAGAGTAA 59.576 50.000 0.00 0.00 0.00 2.24
521 522 3.067461 GTGTGCAGATCGAGGAGAGTAAT 59.933 47.826 0.00 0.00 0.00 1.89
522 523 3.067320 TGTGCAGATCGAGGAGAGTAATG 59.933 47.826 0.00 0.00 0.00 1.90
523 524 3.316588 GTGCAGATCGAGGAGAGTAATGA 59.683 47.826 0.00 0.00 0.00 2.57
524 525 3.567585 TGCAGATCGAGGAGAGTAATGAG 59.432 47.826 0.00 0.00 0.00 2.90
525 526 3.818210 GCAGATCGAGGAGAGTAATGAGA 59.182 47.826 0.00 0.00 0.00 3.27
526 527 4.458989 GCAGATCGAGGAGAGTAATGAGAT 59.541 45.833 0.00 0.00 0.00 2.75
527 528 5.619757 GCAGATCGAGGAGAGTAATGAGATG 60.620 48.000 0.00 0.00 0.00 2.90
528 529 5.009631 AGATCGAGGAGAGTAATGAGATGG 58.990 45.833 0.00 0.00 0.00 3.51
529 530 3.491342 TCGAGGAGAGTAATGAGATGGG 58.509 50.000 0.00 0.00 0.00 4.00
530 531 2.029470 CGAGGAGAGTAATGAGATGGGC 60.029 54.545 0.00 0.00 0.00 5.36
531 532 2.968574 GAGGAGAGTAATGAGATGGGCA 59.031 50.000 0.00 0.00 0.00 5.36
532 533 2.703007 AGGAGAGTAATGAGATGGGCAC 59.297 50.000 0.00 0.00 0.00 5.01
533 534 2.546795 GGAGAGTAATGAGATGGGCACG 60.547 54.545 0.00 0.00 0.00 5.34
534 535 2.101582 GAGAGTAATGAGATGGGCACGT 59.898 50.000 0.00 0.00 0.00 4.49
535 536 3.296854 AGAGTAATGAGATGGGCACGTA 58.703 45.455 0.00 0.00 0.00 3.57
536 537 3.319405 AGAGTAATGAGATGGGCACGTAG 59.681 47.826 0.00 0.00 0.00 3.51
537 538 2.365617 AGTAATGAGATGGGCACGTAGG 59.634 50.000 0.00 0.00 0.00 3.18
538 539 1.204146 AATGAGATGGGCACGTAGGT 58.796 50.000 0.00 0.00 0.00 3.08
547 548 4.814294 CACGTAGGTGCTCCCGGC 62.814 72.222 2.09 0.00 37.35 6.13
551 552 4.733725 TAGGTGCTCCCGGCCCTT 62.734 66.667 0.00 0.00 40.41 3.95
556 557 4.344865 GCTCCCGGCCCTTGACAA 62.345 66.667 0.00 0.00 34.27 3.18
557 558 2.359975 CTCCCGGCCCTTGACAAC 60.360 66.667 0.00 0.00 0.00 3.32
558 559 3.172106 TCCCGGCCCTTGACAACA 61.172 61.111 0.00 0.00 0.00 3.33
559 560 2.203422 CCCGGCCCTTGACAACAA 60.203 61.111 0.00 0.00 34.65 2.83
567 568 3.575399 CTTGACAACAAGGGCAAGC 57.425 52.632 0.00 0.00 46.67 4.01
568 569 0.746063 CTTGACAACAAGGGCAAGCA 59.254 50.000 0.00 0.00 46.67 3.91
569 570 1.136695 CTTGACAACAAGGGCAAGCAA 59.863 47.619 0.00 0.00 46.67 3.91
570 571 0.459489 TGACAACAAGGGCAAGCAAC 59.541 50.000 0.00 0.00 0.00 4.17
571 572 0.249447 GACAACAAGGGCAAGCAACC 60.249 55.000 0.00 0.00 0.00 3.77
577 578 2.909965 GGGCAAGCAACCCGTTCA 60.910 61.111 0.00 0.00 37.67 3.18
578 579 2.335011 GGCAAGCAACCCGTTCAC 59.665 61.111 0.00 0.00 0.00 3.18
579 580 2.335011 GCAAGCAACCCGTTCACC 59.665 61.111 0.00 0.00 0.00 4.02
580 581 3.039134 CAAGCAACCCGTTCACCC 58.961 61.111 0.00 0.00 0.00 4.61
581 582 1.826054 CAAGCAACCCGTTCACCCA 60.826 57.895 0.00 0.00 0.00 4.51
582 583 1.076632 AAGCAACCCGTTCACCCAA 60.077 52.632 0.00 0.00 0.00 4.12
583 584 0.469144 AAGCAACCCGTTCACCCAAT 60.469 50.000 0.00 0.00 0.00 3.16
584 585 1.178534 AGCAACCCGTTCACCCAATG 61.179 55.000 0.00 0.00 0.00 2.82
585 586 1.288752 CAACCCGTTCACCCAATGC 59.711 57.895 0.00 0.00 0.00 3.56
586 587 1.906333 AACCCGTTCACCCAATGCC 60.906 57.895 0.00 0.00 0.00 4.40
587 588 3.068064 CCCGTTCACCCAATGCCC 61.068 66.667 0.00 0.00 0.00 5.36
588 589 3.439540 CCGTTCACCCAATGCCCG 61.440 66.667 0.00 0.00 0.00 6.13
589 590 2.359354 CGTTCACCCAATGCCCGA 60.359 61.111 0.00 0.00 0.00 5.14
590 591 2.686816 CGTTCACCCAATGCCCGAC 61.687 63.158 0.00 0.00 0.00 4.79
591 592 2.359354 TTCACCCAATGCCCGACG 60.359 61.111 0.00 0.00 0.00 5.12
592 593 2.884980 TTCACCCAATGCCCGACGA 61.885 57.895 0.00 0.00 0.00 4.20
593 594 2.796483 TTCACCCAATGCCCGACGAG 62.796 60.000 0.00 0.00 0.00 4.18
594 595 4.096003 ACCCAATGCCCGACGAGG 62.096 66.667 0.00 0.00 40.63 4.63
595 596 4.096003 CCCAATGCCCGACGAGGT 62.096 66.667 0.00 0.00 38.74 3.85
596 597 2.046314 CCAATGCCCGACGAGGTT 60.046 61.111 0.00 0.00 38.74 3.50
597 598 2.398554 CCAATGCCCGACGAGGTTG 61.399 63.158 0.00 0.00 38.74 3.77
598 599 1.671054 CAATGCCCGACGAGGTTGT 60.671 57.895 0.00 0.00 38.74 3.32
599 600 1.671054 AATGCCCGACGAGGTTGTG 60.671 57.895 0.00 0.00 38.74 3.33
600 601 4.980805 TGCCCGACGAGGTTGTGC 62.981 66.667 0.00 0.00 38.74 4.57
601 602 4.681978 GCCCGACGAGGTTGTGCT 62.682 66.667 0.00 0.00 38.74 4.40
602 603 2.738521 CCCGACGAGGTTGTGCTG 60.739 66.667 0.00 0.00 38.74 4.41
603 604 3.414700 CCGACGAGGTTGTGCTGC 61.415 66.667 0.00 0.00 34.51 5.25
604 605 2.356313 CGACGAGGTTGTGCTGCT 60.356 61.111 0.00 0.00 0.00 4.24
605 606 2.661566 CGACGAGGTTGTGCTGCTG 61.662 63.158 0.00 0.00 0.00 4.41
606 607 2.959357 GACGAGGTTGTGCTGCTGC 61.959 63.158 8.89 8.89 40.20 5.25
607 608 3.730761 CGAGGTTGTGCTGCTGCC 61.731 66.667 13.47 5.20 38.71 4.85
608 609 3.368571 GAGGTTGTGCTGCTGCCC 61.369 66.667 13.47 6.80 38.71 5.36
628 629 3.755628 CGCCGAGGAAGACCCGAA 61.756 66.667 0.00 0.00 40.87 4.30
629 630 2.184579 GCCGAGGAAGACCCGAAG 59.815 66.667 0.00 0.00 40.87 3.79
630 631 2.348888 GCCGAGGAAGACCCGAAGA 61.349 63.158 0.00 0.00 40.87 2.87
631 632 1.511768 CCGAGGAAGACCCGAAGAC 59.488 63.158 0.00 0.00 40.87 3.01
632 633 1.136984 CGAGGAAGACCCGAAGACG 59.863 63.158 0.00 0.00 40.87 4.18
633 634 1.153804 GAGGAAGACCCGAAGACGC 60.154 63.158 0.00 0.00 40.87 5.19
634 635 2.125633 GGAAGACCCGAAGACGCC 60.126 66.667 0.00 0.00 38.29 5.68
635 636 2.647158 GGAAGACCCGAAGACGCCT 61.647 63.158 0.00 0.00 38.29 5.52
636 637 1.446272 GAAGACCCGAAGACGCCTG 60.446 63.158 0.00 0.00 38.29 4.85
637 638 1.874345 GAAGACCCGAAGACGCCTGA 61.874 60.000 0.00 0.00 38.29 3.86
638 639 1.878656 AAGACCCGAAGACGCCTGAG 61.879 60.000 0.00 0.00 38.29 3.35
639 640 3.358076 GACCCGAAGACGCCTGAGG 62.358 68.421 0.00 0.00 38.29 3.86
640 641 4.148825 CCCGAAGACGCCTGAGGG 62.149 72.222 0.00 0.00 38.29 4.30
641 642 3.382832 CCGAAGACGCCTGAGGGT 61.383 66.667 0.00 0.00 42.82 4.34
643 644 2.266055 GAAGACGCCTGAGGGTGG 59.734 66.667 0.00 0.00 46.67 4.61
650 651 4.436998 CCTGAGGGTGGCGACGAC 62.437 72.222 0.00 0.00 0.00 4.34
651 652 4.778415 CTGAGGGTGGCGACGACG 62.778 72.222 2.12 2.12 42.93 5.12
653 654 4.477975 GAGGGTGGCGACGACGAG 62.478 72.222 12.29 0.00 42.66 4.18
1097 1154 1.527311 GACTTCACCAAGCACTTCGTC 59.473 52.381 0.00 0.00 32.09 4.20
1210 1342 1.454539 GTTGGGCCACCTACACAGT 59.545 57.895 5.23 0.00 41.41 3.55
1215 1347 0.250166 GGCCACCTACACAGTCGTTT 60.250 55.000 0.00 0.00 0.00 3.60
1420 2953 9.774742 GGTTTATGAGTTGAACTGTTATGAATC 57.225 33.333 0.90 0.00 0.00 2.52
1490 3040 5.793817 ACTCTGTTGTGCTTATGATGTGTA 58.206 37.500 0.00 0.00 0.00 2.90
1500 3060 1.656652 ATGATGTGTACTGCCGAAGC 58.343 50.000 0.00 0.00 40.48 3.86
1613 3173 0.388659 GCATGCAACCAAACACCAGA 59.611 50.000 14.21 0.00 0.00 3.86
1719 3282 0.036875 CCAGGTTGGGTGGAGAAGTC 59.963 60.000 0.00 0.00 37.23 3.01
1747 3310 2.879907 GGGTACTGTAGCGCACGA 59.120 61.111 11.47 0.00 0.00 4.35
1820 3383 0.893270 CCAACTGGTGGCCGAATTGA 60.893 55.000 0.00 0.00 41.72 2.57
1860 3423 7.648039 TTGTGGTGTTACTTCTATTGGTTTT 57.352 32.000 0.00 0.00 0.00 2.43
1861 3424 8.749026 TTGTGGTGTTACTTCTATTGGTTTTA 57.251 30.769 0.00 0.00 0.00 1.52
2119 3708 5.105752 GCAAAGAGCGACATATATAGGAGG 58.894 45.833 0.54 0.00 0.00 4.30
2124 3713 2.358267 GCGACATATATAGGAGGTCCCG 59.642 54.545 0.54 0.00 40.87 5.14
2129 3718 2.327325 ATATAGGAGGTCCCGCACAT 57.673 50.000 0.00 0.00 40.87 3.21
2145 3734 5.156355 CCGCACATGATGGCTATTTATTTC 58.844 41.667 0.00 0.00 0.00 2.17
2146 3735 4.847757 CGCACATGATGGCTATTTATTTCG 59.152 41.667 0.00 0.00 0.00 3.46
2156 3745 8.682936 ATGGCTATTTATTTCGATTTCTCAGT 57.317 30.769 0.00 0.00 0.00 3.41
2170 3759 9.791820 TCGATTTCTCAGTTAAACAATATACGA 57.208 29.630 0.00 0.00 0.00 3.43
2196 3785 9.162764 ACAAAAAGACACTATACATGGACATAC 57.837 33.333 0.00 0.00 0.00 2.39
2245 3835 5.964758 TGGGAAAATTATGAATGTGTGAGC 58.035 37.500 0.00 0.00 0.00 4.26
2255 3845 4.392047 TGAATGTGTGAGCAAGACAAGAT 58.608 39.130 0.00 0.00 0.00 2.40
2308 3898 5.345202 CCATTATTATACTCGCCGTTGAGTC 59.655 44.000 9.75 0.00 45.97 3.36
2323 3913 2.024414 TGAGTCGGTCGATCATGTCAT 58.976 47.619 0.00 0.00 0.00 3.06
2325 3915 1.002359 AGTCGGTCGATCATGTCATCG 60.002 52.381 9.84 9.84 45.91 3.84
2342 3932 4.563184 GTCATCGCTACTACACAAAGAAGG 59.437 45.833 0.00 0.00 0.00 3.46
2343 3933 4.461431 TCATCGCTACTACACAAAGAAGGA 59.539 41.667 0.00 0.00 0.00 3.36
2344 3934 4.170292 TCGCTACTACACAAAGAAGGAC 57.830 45.455 0.00 0.00 0.00 3.85
2345 3935 2.915463 CGCTACTACACAAAGAAGGACG 59.085 50.000 0.00 0.00 0.00 4.79
2346 3936 2.666994 GCTACTACACAAAGAAGGACGC 59.333 50.000 0.00 0.00 0.00 5.19
2347 3937 1.779569 ACTACACAAAGAAGGACGCG 58.220 50.000 3.53 3.53 0.00 6.01
2348 3938 1.068474 CTACACAAAGAAGGACGCGG 58.932 55.000 12.47 0.00 0.00 6.46
2349 3939 0.947180 TACACAAAGAAGGACGCGGC 60.947 55.000 12.47 7.53 0.00 6.53
2350 3940 1.961277 CACAAAGAAGGACGCGGCT 60.961 57.895 13.91 0.00 0.00 5.52
2351 3941 1.227853 ACAAAGAAGGACGCGGCTT 60.228 52.632 13.91 0.00 0.00 4.35
2352 3942 0.818040 ACAAAGAAGGACGCGGCTTT 60.818 50.000 9.96 9.96 0.00 3.51
2353 3943 0.310854 CAAAGAAGGACGCGGCTTTT 59.689 50.000 11.87 6.33 0.00 2.27
2354 3944 1.029681 AAAGAAGGACGCGGCTTTTT 58.970 45.000 11.87 1.15 0.00 1.94
2374 3964 6.582437 TTTTTGCTCTTTTTCATCGAAACC 57.418 33.333 0.00 0.00 30.83 3.27
2375 3965 5.514274 TTTGCTCTTTTTCATCGAAACCT 57.486 34.783 0.00 0.00 30.83 3.50
2376 3966 5.514274 TTGCTCTTTTTCATCGAAACCTT 57.486 34.783 0.00 0.00 30.83 3.50
2377 3967 4.858935 TGCTCTTTTTCATCGAAACCTTG 58.141 39.130 0.00 0.00 30.83 3.61
2378 3968 4.338118 TGCTCTTTTTCATCGAAACCTTGT 59.662 37.500 0.00 0.00 30.83 3.16
2379 3969 4.676924 GCTCTTTTTCATCGAAACCTTGTG 59.323 41.667 0.00 0.00 30.83 3.33
2380 3970 5.505654 GCTCTTTTTCATCGAAACCTTGTGA 60.506 40.000 0.00 0.00 30.83 3.58
2381 3971 6.443934 TCTTTTTCATCGAAACCTTGTGAA 57.556 33.333 0.00 0.00 30.83 3.18
2382 3972 6.262601 TCTTTTTCATCGAAACCTTGTGAAC 58.737 36.000 0.00 0.00 30.83 3.18
2383 3973 3.870723 TTCATCGAAACCTTGTGAACG 57.129 42.857 0.00 0.00 0.00 3.95
2384 3974 2.139917 TCATCGAAACCTTGTGAACGG 58.860 47.619 0.00 0.00 0.00 4.44
2385 3975 2.139917 CATCGAAACCTTGTGAACGGA 58.860 47.619 0.00 0.00 0.00 4.69
2386 3976 1.574134 TCGAAACCTTGTGAACGGAC 58.426 50.000 0.00 0.00 0.00 4.79
2387 3977 1.134759 TCGAAACCTTGTGAACGGACA 60.135 47.619 0.00 0.00 0.00 4.02
2388 3978 1.871039 CGAAACCTTGTGAACGGACAT 59.129 47.619 0.00 0.00 0.00 3.06
2389 3979 3.061322 CGAAACCTTGTGAACGGACATA 58.939 45.455 0.00 0.00 0.00 2.29
2390 3980 3.495377 CGAAACCTTGTGAACGGACATAA 59.505 43.478 0.00 0.00 0.00 1.90
2391 3981 4.024725 CGAAACCTTGTGAACGGACATAAA 60.025 41.667 0.00 0.00 0.00 1.40
2392 3982 5.504337 CGAAACCTTGTGAACGGACATAAAA 60.504 40.000 0.00 0.00 0.00 1.52
2393 3983 6.399639 AAACCTTGTGAACGGACATAAAAT 57.600 33.333 0.00 0.00 0.00 1.82
2394 3984 5.371115 ACCTTGTGAACGGACATAAAATG 57.629 39.130 0.00 0.00 0.00 2.32
2409 3999 5.407387 ACATAAAATGTCCGGATATACACGC 59.593 40.000 14.71 0.00 39.92 5.34
2410 4000 2.060326 AATGTCCGGATATACACGCG 57.940 50.000 14.71 3.53 0.00 6.01
2411 4001 0.242825 ATGTCCGGATATACACGCGG 59.757 55.000 12.63 1.27 0.00 6.46
2412 4002 1.080974 GTCCGGATATACACGCGGG 60.081 63.158 6.92 6.92 0.00 6.13
2413 4003 1.228215 TCCGGATATACACGCGGGA 60.228 57.895 19.19 2.35 0.00 5.14
2414 4004 0.609957 TCCGGATATACACGCGGGAT 60.610 55.000 19.19 6.43 0.00 3.85
2415 4005 0.245539 CCGGATATACACGCGGGATT 59.754 55.000 19.19 3.73 0.00 3.01
2416 4006 1.337447 CCGGATATACACGCGGGATTT 60.337 52.381 19.19 0.61 0.00 2.17
2417 4007 2.409975 CGGATATACACGCGGGATTTT 58.590 47.619 19.19 0.00 0.00 1.82
2418 4008 2.803956 CGGATATACACGCGGGATTTTT 59.196 45.455 19.19 0.00 0.00 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
10 11 1.546923 TCCAACGATGCTAAACGGAGA 59.453 47.619 0.00 0.00 0.00 3.71
27 28 0.178767 CATGAATCAGGCCGTCTCCA 59.821 55.000 0.00 0.00 0.00 3.86
195 196 0.878523 CCGCACCAAGTTCGAGAACA 60.879 55.000 17.00 0.00 43.47 3.18
196 197 0.878961 ACCGCACCAAGTTCGAGAAC 60.879 55.000 7.83 7.83 41.45 3.01
233 234 1.379176 GCTGGAGGGCCTTCTTTCC 60.379 63.158 14.33 7.66 34.31 3.13
271 272 2.281484 TCCAGCTCCAACGCCAAC 60.281 61.111 0.00 0.00 0.00 3.77
303 304 0.983378 AACCTTCCTCCTCCCCATCG 60.983 60.000 0.00 0.00 0.00 3.84
344 345 0.474079 TGCCCACCACTACTTACCCA 60.474 55.000 0.00 0.00 0.00 4.51
345 346 0.252197 CTGCCCACCACTACTTACCC 59.748 60.000 0.00 0.00 0.00 3.69
347 348 0.252197 CCCTGCCCACCACTACTTAC 59.748 60.000 0.00 0.00 0.00 2.34
348 349 0.178885 ACCCTGCCCACCACTACTTA 60.179 55.000 0.00 0.00 0.00 2.24
349 350 1.463410 ACCCTGCCCACCACTACTT 60.463 57.895 0.00 0.00 0.00 2.24
350 351 2.207189 ACCCTGCCCACCACTACT 59.793 61.111 0.00 0.00 0.00 2.57
351 352 2.185310 CTCACCCTGCCCACCACTAC 62.185 65.000 0.00 0.00 0.00 2.73
384 385 1.022903 ACTCTTCTCCTCCTCCCCAT 58.977 55.000 0.00 0.00 0.00 4.00
385 386 0.041833 CACTCTTCTCCTCCTCCCCA 59.958 60.000 0.00 0.00 0.00 4.96
386 387 0.689412 CCACTCTTCTCCTCCTCCCC 60.689 65.000 0.00 0.00 0.00 4.81
387 388 1.334384 GCCACTCTTCTCCTCCTCCC 61.334 65.000 0.00 0.00 0.00 4.30
388 389 0.616111 TGCCACTCTTCTCCTCCTCC 60.616 60.000 0.00 0.00 0.00 4.30
389 390 0.823460 CTGCCACTCTTCTCCTCCTC 59.177 60.000 0.00 0.00 0.00 3.71
390 391 0.116143 ACTGCCACTCTTCTCCTCCT 59.884 55.000 0.00 0.00 0.00 3.69
391 392 0.534873 GACTGCCACTCTTCTCCTCC 59.465 60.000 0.00 0.00 0.00 4.30
392 393 1.261480 TGACTGCCACTCTTCTCCTC 58.739 55.000 0.00 0.00 0.00 3.71
393 394 1.554160 CATGACTGCCACTCTTCTCCT 59.446 52.381 0.00 0.00 0.00 3.69
394 395 1.277557 ACATGACTGCCACTCTTCTCC 59.722 52.381 0.00 0.00 0.00 3.71
395 396 2.740981 CAACATGACTGCCACTCTTCTC 59.259 50.000 0.00 0.00 0.00 2.87
396 397 2.105477 ACAACATGACTGCCACTCTTCT 59.895 45.455 0.00 0.00 0.00 2.85
397 398 2.498167 ACAACATGACTGCCACTCTTC 58.502 47.619 0.00 0.00 0.00 2.87
398 399 2.645838 ACAACATGACTGCCACTCTT 57.354 45.000 0.00 0.00 0.00 2.85
399 400 2.645838 AACAACATGACTGCCACTCT 57.354 45.000 0.00 0.00 0.00 3.24
400 401 3.715628 AAAACAACATGACTGCCACTC 57.284 42.857 0.00 0.00 0.00 3.51
401 402 4.644685 AGTTAAAACAACATGACTGCCACT 59.355 37.500 0.00 0.00 0.00 4.00
402 403 4.932146 AGTTAAAACAACATGACTGCCAC 58.068 39.130 0.00 0.00 0.00 5.01
403 404 5.590663 TGTAGTTAAAACAACATGACTGCCA 59.409 36.000 0.00 0.00 0.00 4.92
404 405 6.067263 TGTAGTTAAAACAACATGACTGCC 57.933 37.500 0.00 0.00 0.00 4.85
405 406 6.088085 GCATGTAGTTAAAACAACATGACTGC 59.912 38.462 16.22 9.10 37.68 4.40
406 407 7.362662 AGCATGTAGTTAAAACAACATGACTG 58.637 34.615 16.22 0.00 37.68 3.51
407 408 7.510549 AGCATGTAGTTAAAACAACATGACT 57.489 32.000 16.22 10.47 37.68 3.41
408 409 8.574196 AAAGCATGTAGTTAAAACAACATGAC 57.426 30.769 16.22 8.76 37.68 3.06
409 410 9.243637 GAAAAGCATGTAGTTAAAACAACATGA 57.756 29.630 16.22 0.00 37.68 3.07
410 411 9.029243 TGAAAAGCATGTAGTTAAAACAACATG 57.971 29.630 9.37 9.37 38.27 3.21
411 412 9.593134 TTGAAAAGCATGTAGTTAAAACAACAT 57.407 25.926 0.00 0.00 0.00 2.71
412 413 8.988064 TTGAAAAGCATGTAGTTAAAACAACA 57.012 26.923 0.00 0.00 0.00 3.33
417 418 9.418045 GGCTAATTGAAAAGCATGTAGTTAAAA 57.582 29.630 5.45 0.00 40.61 1.52
418 419 8.580720 TGGCTAATTGAAAAGCATGTAGTTAAA 58.419 29.630 5.45 0.00 40.61 1.52
419 420 8.116651 TGGCTAATTGAAAAGCATGTAGTTAA 57.883 30.769 5.45 0.00 40.61 2.01
420 421 7.695480 TGGCTAATTGAAAAGCATGTAGTTA 57.305 32.000 5.45 0.00 40.61 2.24
421 422 6.588719 TGGCTAATTGAAAAGCATGTAGTT 57.411 33.333 5.45 0.00 40.61 2.24
422 423 6.377996 TCATGGCTAATTGAAAAGCATGTAGT 59.622 34.615 5.45 0.00 40.61 2.73
423 424 6.798482 TCATGGCTAATTGAAAAGCATGTAG 58.202 36.000 5.45 0.00 40.61 2.74
424 425 6.772360 TCATGGCTAATTGAAAAGCATGTA 57.228 33.333 5.45 0.00 40.61 2.29
425 426 5.664294 TCATGGCTAATTGAAAAGCATGT 57.336 34.783 5.45 0.00 40.61 3.21
426 427 6.035650 CAGTTCATGGCTAATTGAAAAGCATG 59.964 38.462 5.45 0.00 40.61 4.06
427 428 6.103997 CAGTTCATGGCTAATTGAAAAGCAT 58.896 36.000 5.45 0.00 40.61 3.79
428 429 5.472148 CAGTTCATGGCTAATTGAAAAGCA 58.528 37.500 5.45 0.00 40.61 3.91
429 430 4.328169 GCAGTTCATGGCTAATTGAAAAGC 59.672 41.667 0.00 0.00 33.90 3.51
430 431 5.717119 AGCAGTTCATGGCTAATTGAAAAG 58.283 37.500 0.00 0.00 38.90 2.27
431 432 5.477984 AGAGCAGTTCATGGCTAATTGAAAA 59.522 36.000 0.00 0.00 41.22 2.29
432 433 5.012239 AGAGCAGTTCATGGCTAATTGAAA 58.988 37.500 0.00 0.00 41.22 2.69
433 434 4.592942 AGAGCAGTTCATGGCTAATTGAA 58.407 39.130 0.00 0.00 41.22 2.69
434 435 4.226427 AGAGCAGTTCATGGCTAATTGA 57.774 40.909 0.00 0.00 41.22 2.57
435 436 4.397103 TGAAGAGCAGTTCATGGCTAATTG 59.603 41.667 0.00 0.00 41.22 2.32
436 437 4.592942 TGAAGAGCAGTTCATGGCTAATT 58.407 39.130 0.00 0.00 41.22 1.40
437 438 4.226427 TGAAGAGCAGTTCATGGCTAAT 57.774 40.909 0.00 0.00 41.22 1.73
438 439 3.701205 TGAAGAGCAGTTCATGGCTAA 57.299 42.857 0.00 0.00 41.22 3.09
439 440 3.701205 TTGAAGAGCAGTTCATGGCTA 57.299 42.857 1.95 0.00 41.22 3.93
440 441 2.574006 TTGAAGAGCAGTTCATGGCT 57.426 45.000 1.95 0.00 44.48 4.75
441 442 3.863142 AATTGAAGAGCAGTTCATGGC 57.137 42.857 1.95 0.00 36.34 4.40
442 443 4.201990 GGCTAATTGAAGAGCAGTTCATGG 60.202 45.833 4.54 0.00 40.64 3.66
443 444 4.397103 TGGCTAATTGAAGAGCAGTTCATG 59.603 41.667 4.54 0.00 40.64 3.07
444 445 4.592942 TGGCTAATTGAAGAGCAGTTCAT 58.407 39.130 4.54 0.00 40.64 2.57
445 446 4.019792 TGGCTAATTGAAGAGCAGTTCA 57.980 40.909 4.54 0.00 40.64 3.18
446 447 4.637534 TCATGGCTAATTGAAGAGCAGTTC 59.362 41.667 4.54 0.00 40.64 3.01
447 448 4.592942 TCATGGCTAATTGAAGAGCAGTT 58.407 39.130 4.54 0.00 40.64 3.16
448 449 4.226427 TCATGGCTAATTGAAGAGCAGT 57.774 40.909 4.54 0.00 40.64 4.40
449 450 4.639310 AGTTCATGGCTAATTGAAGAGCAG 59.361 41.667 4.54 0.00 40.64 4.24
450 451 4.592942 AGTTCATGGCTAATTGAAGAGCA 58.407 39.130 4.54 0.00 40.64 4.26
451 452 4.880696 AGAGTTCATGGCTAATTGAAGAGC 59.119 41.667 0.00 0.00 38.00 4.09
452 453 5.879223 ACAGAGTTCATGGCTAATTGAAGAG 59.121 40.000 0.00 0.00 32.79 2.85
453 454 5.645067 CACAGAGTTCATGGCTAATTGAAGA 59.355 40.000 0.00 0.00 32.79 2.87
454 455 5.413833 ACACAGAGTTCATGGCTAATTGAAG 59.586 40.000 0.00 0.00 32.79 3.02
455 456 5.316167 ACACAGAGTTCATGGCTAATTGAA 58.684 37.500 0.00 0.00 0.00 2.69
456 457 4.910195 ACACAGAGTTCATGGCTAATTGA 58.090 39.130 0.00 0.00 0.00 2.57
457 458 5.048504 ACAACACAGAGTTCATGGCTAATTG 60.049 40.000 0.00 0.00 38.74 2.32
458 459 5.048504 CACAACACAGAGTTCATGGCTAATT 60.049 40.000 0.00 0.00 38.74 1.40
459 460 4.456911 CACAACACAGAGTTCATGGCTAAT 59.543 41.667 0.00 0.00 38.74 1.73
460 461 3.814842 CACAACACAGAGTTCATGGCTAA 59.185 43.478 0.00 0.00 38.74 3.09
461 462 3.402110 CACAACACAGAGTTCATGGCTA 58.598 45.455 0.00 0.00 38.74 3.93
462 463 2.224606 CACAACACAGAGTTCATGGCT 58.775 47.619 0.00 0.00 38.74 4.75
463 464 1.335324 GCACAACACAGAGTTCATGGC 60.335 52.381 0.00 0.00 38.74 4.40
464 465 2.224606 AGCACAACACAGAGTTCATGG 58.775 47.619 0.00 0.00 38.74 3.66
465 466 3.313249 TCAAGCACAACACAGAGTTCATG 59.687 43.478 0.00 0.00 38.74 3.07
466 467 3.313526 GTCAAGCACAACACAGAGTTCAT 59.686 43.478 0.00 0.00 38.74 2.57
467 468 2.677836 GTCAAGCACAACACAGAGTTCA 59.322 45.455 0.00 0.00 38.74 3.18
468 469 2.939103 AGTCAAGCACAACACAGAGTTC 59.061 45.455 0.00 0.00 38.74 3.01
469 470 2.991250 AGTCAAGCACAACACAGAGTT 58.009 42.857 0.00 0.00 42.42 3.01
470 471 2.698855 AGTCAAGCACAACACAGAGT 57.301 45.000 0.00 0.00 0.00 3.24
471 472 2.938451 TGAAGTCAAGCACAACACAGAG 59.062 45.455 0.00 0.00 0.00 3.35
472 473 2.984562 TGAAGTCAAGCACAACACAGA 58.015 42.857 0.00 0.00 0.00 3.41
473 474 3.313249 TCATGAAGTCAAGCACAACACAG 59.687 43.478 0.00 0.00 0.00 3.66
474 475 3.277715 TCATGAAGTCAAGCACAACACA 58.722 40.909 0.00 0.00 0.00 3.72
475 476 3.969117 TCATGAAGTCAAGCACAACAC 57.031 42.857 0.00 0.00 0.00 3.32
476 477 5.163530 ACAATTCATGAAGTCAAGCACAACA 60.164 36.000 14.54 0.00 0.00 3.33
477 478 5.174398 CACAATTCATGAAGTCAAGCACAAC 59.826 40.000 14.54 0.00 0.00 3.32
478 479 5.163530 ACACAATTCATGAAGTCAAGCACAA 60.164 36.000 14.54 0.00 0.00 3.33
479 480 4.338964 ACACAATTCATGAAGTCAAGCACA 59.661 37.500 14.54 0.00 0.00 4.57
480 481 4.678287 CACACAATTCATGAAGTCAAGCAC 59.322 41.667 14.54 0.00 0.00 4.40
481 482 4.793678 GCACACAATTCATGAAGTCAAGCA 60.794 41.667 14.54 0.00 0.00 3.91
482 483 3.671928 GCACACAATTCATGAAGTCAAGC 59.328 43.478 14.54 9.57 0.00 4.01
483 484 4.862350 TGCACACAATTCATGAAGTCAAG 58.138 39.130 14.54 5.84 0.00 3.02
484 485 4.579753 TCTGCACACAATTCATGAAGTCAA 59.420 37.500 14.54 0.00 0.00 3.18
485 486 4.136051 TCTGCACACAATTCATGAAGTCA 58.864 39.130 14.54 4.34 0.00 3.41
486 487 4.754372 TCTGCACACAATTCATGAAGTC 57.246 40.909 14.54 0.00 0.00 3.01
487 488 4.142752 CGATCTGCACACAATTCATGAAGT 60.143 41.667 14.54 8.63 0.00 3.01
488 489 4.093850 TCGATCTGCACACAATTCATGAAG 59.906 41.667 14.54 3.71 0.00 3.02
489 490 4.002316 TCGATCTGCACACAATTCATGAA 58.998 39.130 11.26 11.26 0.00 2.57
490 491 3.598299 TCGATCTGCACACAATTCATGA 58.402 40.909 0.00 0.00 0.00 3.07
491 492 3.242641 CCTCGATCTGCACACAATTCATG 60.243 47.826 0.00 0.00 0.00 3.07
492 493 2.941064 CCTCGATCTGCACACAATTCAT 59.059 45.455 0.00 0.00 0.00 2.57
493 494 2.028203 TCCTCGATCTGCACACAATTCA 60.028 45.455 0.00 0.00 0.00 2.57
494 495 2.606725 CTCCTCGATCTGCACACAATTC 59.393 50.000 0.00 0.00 0.00 2.17
495 496 2.234661 TCTCCTCGATCTGCACACAATT 59.765 45.455 0.00 0.00 0.00 2.32
496 497 1.827344 TCTCCTCGATCTGCACACAAT 59.173 47.619 0.00 0.00 0.00 2.71
497 498 1.203287 CTCTCCTCGATCTGCACACAA 59.797 52.381 0.00 0.00 0.00 3.33
498 499 0.813821 CTCTCCTCGATCTGCACACA 59.186 55.000 0.00 0.00 0.00 3.72
499 500 0.814457 ACTCTCCTCGATCTGCACAC 59.186 55.000 0.00 0.00 0.00 3.82
500 501 2.420058 TACTCTCCTCGATCTGCACA 57.580 50.000 0.00 0.00 0.00 4.57
501 502 3.316588 TCATTACTCTCCTCGATCTGCAC 59.683 47.826 0.00 0.00 0.00 4.57
502 503 3.555966 TCATTACTCTCCTCGATCTGCA 58.444 45.455 0.00 0.00 0.00 4.41
503 504 3.818210 TCTCATTACTCTCCTCGATCTGC 59.182 47.826 0.00 0.00 0.00 4.26
504 505 5.106197 CCATCTCATTACTCTCCTCGATCTG 60.106 48.000 0.00 0.00 0.00 2.90
505 506 5.009631 CCATCTCATTACTCTCCTCGATCT 58.990 45.833 0.00 0.00 0.00 2.75
506 507 4.157656 CCCATCTCATTACTCTCCTCGATC 59.842 50.000 0.00 0.00 0.00 3.69
507 508 4.085733 CCCATCTCATTACTCTCCTCGAT 58.914 47.826 0.00 0.00 0.00 3.59
508 509 3.491342 CCCATCTCATTACTCTCCTCGA 58.509 50.000 0.00 0.00 0.00 4.04
509 510 2.029470 GCCCATCTCATTACTCTCCTCG 60.029 54.545 0.00 0.00 0.00 4.63
510 511 2.968574 TGCCCATCTCATTACTCTCCTC 59.031 50.000 0.00 0.00 0.00 3.71
511 512 2.703007 GTGCCCATCTCATTACTCTCCT 59.297 50.000 0.00 0.00 0.00 3.69
512 513 2.546795 CGTGCCCATCTCATTACTCTCC 60.547 54.545 0.00 0.00 0.00 3.71
513 514 2.101582 ACGTGCCCATCTCATTACTCTC 59.898 50.000 0.00 0.00 0.00 3.20
514 515 2.111384 ACGTGCCCATCTCATTACTCT 58.889 47.619 0.00 0.00 0.00 3.24
515 516 2.604046 ACGTGCCCATCTCATTACTC 57.396 50.000 0.00 0.00 0.00 2.59
516 517 2.365617 CCTACGTGCCCATCTCATTACT 59.634 50.000 0.00 0.00 0.00 2.24
517 518 2.102588 ACCTACGTGCCCATCTCATTAC 59.897 50.000 0.00 0.00 0.00 1.89
518 519 2.102420 CACCTACGTGCCCATCTCATTA 59.898 50.000 0.00 0.00 32.04 1.90
519 520 1.134401 CACCTACGTGCCCATCTCATT 60.134 52.381 0.00 0.00 32.04 2.57
520 521 0.465705 CACCTACGTGCCCATCTCAT 59.534 55.000 0.00 0.00 32.04 2.90
521 522 1.897423 CACCTACGTGCCCATCTCA 59.103 57.895 0.00 0.00 32.04 3.27
522 523 4.835927 CACCTACGTGCCCATCTC 57.164 61.111 0.00 0.00 32.04 2.75
530 531 4.814294 GCCGGGAGCACCTACGTG 62.814 72.222 2.18 0.00 42.97 4.49
539 540 4.344865 TTGTCAAGGGCCGGGAGC 62.345 66.667 2.18 0.00 42.60 4.70
540 541 2.359975 GTTGTCAAGGGCCGGGAG 60.360 66.667 2.18 0.00 0.00 4.30
541 542 2.690653 CTTGTTGTCAAGGGCCGGGA 62.691 60.000 2.18 0.00 45.02 5.14
542 543 2.203422 TTGTTGTCAAGGGCCGGG 60.203 61.111 2.18 0.00 0.00 5.73
543 544 3.354678 CTTGTTGTCAAGGGCCGG 58.645 61.111 0.00 0.00 45.02 6.13
550 551 1.134848 GTTGCTTGCCCTTGTTGTCAA 60.135 47.619 0.00 0.00 0.00 3.18
551 552 0.459489 GTTGCTTGCCCTTGTTGTCA 59.541 50.000 0.00 0.00 0.00 3.58
552 553 0.249447 GGTTGCTTGCCCTTGTTGTC 60.249 55.000 0.00 0.00 0.00 3.18
553 554 1.685355 GGGTTGCTTGCCCTTGTTGT 61.685 55.000 3.98 0.00 42.81 3.32
554 555 1.069596 GGGTTGCTTGCCCTTGTTG 59.930 57.895 3.98 0.00 42.81 3.33
555 556 2.498056 CGGGTTGCTTGCCCTTGTT 61.498 57.895 8.69 0.00 43.92 2.83
556 557 2.912025 CGGGTTGCTTGCCCTTGT 60.912 61.111 8.69 0.00 43.92 3.16
557 558 2.420466 GAACGGGTTGCTTGCCCTTG 62.420 60.000 8.69 0.00 43.92 3.61
558 559 2.123468 AACGGGTTGCTTGCCCTT 60.123 55.556 8.69 0.00 43.92 3.95
559 560 2.597510 GAACGGGTTGCTTGCCCT 60.598 61.111 8.69 0.00 43.92 5.19
560 561 2.909965 TGAACGGGTTGCTTGCCC 60.910 61.111 0.00 1.44 42.68 5.36
561 562 2.335011 GTGAACGGGTTGCTTGCC 59.665 61.111 0.00 0.00 0.00 4.52
562 563 2.335011 GGTGAACGGGTTGCTTGC 59.665 61.111 0.00 0.00 0.00 4.01
563 564 1.388065 TTGGGTGAACGGGTTGCTTG 61.388 55.000 0.00 0.00 0.00 4.01
564 565 0.469144 ATTGGGTGAACGGGTTGCTT 60.469 50.000 0.00 0.00 0.00 3.91
565 566 1.152830 ATTGGGTGAACGGGTTGCT 59.847 52.632 0.00 0.00 0.00 3.91
566 567 1.288752 CATTGGGTGAACGGGTTGC 59.711 57.895 0.00 0.00 0.00 4.17
567 568 1.288752 GCATTGGGTGAACGGGTTG 59.711 57.895 0.00 0.00 0.00 3.77
568 569 1.906333 GGCATTGGGTGAACGGGTT 60.906 57.895 0.00 0.00 0.00 4.11
569 570 2.282887 GGCATTGGGTGAACGGGT 60.283 61.111 0.00 0.00 0.00 5.28
570 571 3.068064 GGGCATTGGGTGAACGGG 61.068 66.667 0.00 0.00 0.00 5.28
571 572 3.439540 CGGGCATTGGGTGAACGG 61.440 66.667 0.00 0.00 0.00 4.44
572 573 2.359354 TCGGGCATTGGGTGAACG 60.359 61.111 0.00 0.00 0.00 3.95
573 574 2.686816 CGTCGGGCATTGGGTGAAC 61.687 63.158 0.00 0.00 0.00 3.18
574 575 2.359354 CGTCGGGCATTGGGTGAA 60.359 61.111 0.00 0.00 0.00 3.18
575 576 3.309436 CTCGTCGGGCATTGGGTGA 62.309 63.158 0.00 0.00 0.00 4.02
576 577 2.819595 CTCGTCGGGCATTGGGTG 60.820 66.667 0.00 0.00 0.00 4.61
577 578 4.096003 CCTCGTCGGGCATTGGGT 62.096 66.667 0.00 0.00 0.00 4.51
578 579 3.622060 AACCTCGTCGGGCATTGGG 62.622 63.158 0.00 0.00 36.97 4.12
579 580 2.046314 AACCTCGTCGGGCATTGG 60.046 61.111 0.00 0.00 36.97 3.16
580 581 1.671054 ACAACCTCGTCGGGCATTG 60.671 57.895 5.95 5.95 36.97 2.82
581 582 1.671054 CACAACCTCGTCGGGCATT 60.671 57.895 0.00 0.00 36.97 3.56
582 583 2.047274 CACAACCTCGTCGGGCAT 60.047 61.111 0.00 0.00 36.97 4.40
583 584 4.980805 GCACAACCTCGTCGGGCA 62.981 66.667 0.00 0.00 36.97 5.36
584 585 4.681978 AGCACAACCTCGTCGGGC 62.682 66.667 0.00 0.00 36.97 6.13
585 586 2.738521 CAGCACAACCTCGTCGGG 60.739 66.667 0.00 0.00 36.97 5.14
586 587 3.414700 GCAGCACAACCTCGTCGG 61.415 66.667 0.00 0.00 39.35 4.79
587 588 2.356313 AGCAGCACAACCTCGTCG 60.356 61.111 0.00 0.00 0.00 5.12
588 589 2.959357 GCAGCAGCACAACCTCGTC 61.959 63.158 0.00 0.00 41.58 4.20
589 590 2.974698 GCAGCAGCACAACCTCGT 60.975 61.111 0.00 0.00 41.58 4.18
590 591 3.730761 GGCAGCAGCACAACCTCG 61.731 66.667 2.65 0.00 44.61 4.63
591 592 3.368571 GGGCAGCAGCACAACCTC 61.369 66.667 2.65 0.00 45.91 3.85
611 612 3.701604 CTTCGGGTCTTCCTCGGCG 62.702 68.421 0.00 0.00 0.00 6.46
612 613 2.184579 CTTCGGGTCTTCCTCGGC 59.815 66.667 0.00 0.00 0.00 5.54
613 614 1.511768 GTCTTCGGGTCTTCCTCGG 59.488 63.158 0.00 0.00 0.00 4.63
614 615 1.136984 CGTCTTCGGGTCTTCCTCG 59.863 63.158 0.00 0.00 0.00 4.63
615 616 1.153804 GCGTCTTCGGGTCTTCCTC 60.154 63.158 0.00 0.00 37.56 3.71
616 617 2.647158 GGCGTCTTCGGGTCTTCCT 61.647 63.158 0.00 0.00 37.56 3.36
617 618 2.125633 GGCGTCTTCGGGTCTTCC 60.126 66.667 0.00 0.00 37.56 3.46
618 619 1.446272 CAGGCGTCTTCGGGTCTTC 60.446 63.158 0.00 0.00 37.56 2.87
619 620 1.878656 CTCAGGCGTCTTCGGGTCTT 61.879 60.000 0.00 0.00 37.56 3.01
620 621 2.282958 TCAGGCGTCTTCGGGTCT 60.283 61.111 0.00 0.00 37.56 3.85
621 622 2.182030 CTCAGGCGTCTTCGGGTC 59.818 66.667 0.00 0.00 37.56 4.46
622 623 3.382832 CCTCAGGCGTCTTCGGGT 61.383 66.667 0.00 0.00 37.56 5.28
623 624 4.148825 CCCTCAGGCGTCTTCGGG 62.149 72.222 6.03 6.03 37.56 5.14
624 625 3.382832 ACCCTCAGGCGTCTTCGG 61.383 66.667 0.00 0.00 36.11 4.30
625 626 2.125912 CACCCTCAGGCGTCTTCG 60.126 66.667 0.00 0.00 36.11 3.79
626 627 2.266055 CCACCCTCAGGCGTCTTC 59.734 66.667 0.00 0.00 36.11 2.87
627 628 4.021925 GCCACCCTCAGGCGTCTT 62.022 66.667 0.00 0.00 43.15 3.01
633 634 4.436998 GTCGTCGCCACCCTCAGG 62.437 72.222 0.00 0.00 40.04 3.86
634 635 4.778415 CGTCGTCGCCACCCTCAG 62.778 72.222 0.00 0.00 0.00 3.35
636 637 4.477975 CTCGTCGTCGCCACCCTC 62.478 72.222 0.00 0.00 36.96 4.30
1210 1342 4.038042 AGCCGATCTTGATCTGATAAACGA 59.962 41.667 8.70 0.00 0.00 3.85
1215 1347 5.105595 CCATGTAGCCGATCTTGATCTGATA 60.106 44.000 8.70 3.11 0.00 2.15
1318 1567 2.049433 CTTCGTCGTGCTTCCCGT 60.049 61.111 0.00 0.00 0.00 5.28
1420 2953 8.864024 CATAATTCAGATATAAGCAGTACCACG 58.136 37.037 0.00 0.00 0.00 4.94
1490 3040 4.988598 CCACCACGCTTCGGCAGT 62.989 66.667 0.00 0.00 41.88 4.40
1613 3173 0.538057 CATGGGCAGAACCACACTGT 60.538 55.000 0.00 0.00 44.72 3.55
1719 3282 1.953559 ACAGTACCCGCATTGCATAG 58.046 50.000 9.69 0.00 0.00 2.23
1747 3310 0.470766 TCTAGGGCGTGTTTGGTTGT 59.529 50.000 0.00 0.00 0.00 3.32
1995 3560 3.010808 TGGTTATTTCGGATCCTTTGGGT 59.989 43.478 10.75 0.00 0.00 4.51
1998 3563 3.694072 TGCTGGTTATTTCGGATCCTTTG 59.306 43.478 10.75 0.00 0.00 2.77
1999 3564 3.963129 TGCTGGTTATTTCGGATCCTTT 58.037 40.909 10.75 0.00 0.00 3.11
2003 3568 4.083003 TGTTGTTGCTGGTTATTTCGGATC 60.083 41.667 0.00 0.00 0.00 3.36
2005 3570 3.003897 GTGTTGTTGCTGGTTATTTCGGA 59.996 43.478 0.00 0.00 0.00 4.55
2009 3574 3.550030 GCGAGTGTTGTTGCTGGTTATTT 60.550 43.478 0.00 0.00 0.00 1.40
2069 3634 3.758931 GCCAAATCGCACACCCCC 61.759 66.667 0.00 0.00 0.00 5.40
2070 3635 4.114997 CGCCAAATCGCACACCCC 62.115 66.667 0.00 0.00 0.00 4.95
2071 3636 1.977594 CTACGCCAAATCGCACACCC 61.978 60.000 0.00 0.00 0.00 4.61
2072 3637 1.296056 ACTACGCCAAATCGCACACC 61.296 55.000 0.00 0.00 0.00 4.16
2073 3638 1.352114 TACTACGCCAAATCGCACAC 58.648 50.000 0.00 0.00 0.00 3.82
2074 3639 2.303163 ATACTACGCCAAATCGCACA 57.697 45.000 0.00 0.00 0.00 4.57
2075 3640 3.350912 CAAATACTACGCCAAATCGCAC 58.649 45.455 0.00 0.00 0.00 5.34
2076 3641 2.223157 GCAAATACTACGCCAAATCGCA 60.223 45.455 0.00 0.00 0.00 5.10
2077 3642 2.223157 TGCAAATACTACGCCAAATCGC 60.223 45.455 0.00 0.00 0.00 4.58
2078 3643 3.666883 TGCAAATACTACGCCAAATCG 57.333 42.857 0.00 0.00 0.00 3.34
2105 3694 3.130693 GTGCGGGACCTCCTATATATGTC 59.869 52.174 0.00 0.00 35.95 3.06
2113 3702 0.398522 ATCATGTGCGGGACCTCCTA 60.399 55.000 0.00 0.00 35.95 2.94
2114 3703 1.690633 ATCATGTGCGGGACCTCCT 60.691 57.895 0.00 0.00 35.95 3.69
2119 3708 0.250467 ATAGCCATCATGTGCGGGAC 60.250 55.000 0.00 0.00 0.00 4.46
2124 3713 6.000891 TCGAAATAAATAGCCATCATGTGC 57.999 37.500 0.00 0.00 0.00 4.57
2129 3718 8.675705 TGAGAAATCGAAATAAATAGCCATCA 57.324 30.769 0.00 0.00 0.00 3.07
2145 3734 9.831054 GTCGTATATTGTTTAACTGAGAAATCG 57.169 33.333 0.00 0.00 0.00 3.34
2170 3759 9.162764 GTATGTCCATGTATAGTGTCTTTTTGT 57.837 33.333 0.00 0.00 0.00 2.83
2208 3797 9.732130 CATAATTTTCCCAAAAATAAACCCTCA 57.268 29.630 0.00 0.00 42.82 3.86
2232 3821 4.392047 TCTTGTCTTGCTCACACATTCAT 58.608 39.130 0.00 0.00 0.00 2.57
2245 3835 3.431486 GGCCCTCACTCTATCTTGTCTTG 60.431 52.174 0.00 0.00 0.00 3.02
2255 3845 2.247699 TGCTAAAGGCCCTCACTCTA 57.752 50.000 0.00 0.00 40.92 2.43
2289 3879 2.287427 CCGACTCAACGGCGAGTATAAT 60.287 50.000 16.62 0.00 46.26 1.28
2292 3882 1.432251 CCGACTCAACGGCGAGTAT 59.568 57.895 16.62 0.00 46.26 2.12
2308 3898 0.318191 AGCGATGACATGATCGACCG 60.318 55.000 18.09 6.76 46.72 4.79
2323 3913 3.365666 CGTCCTTCTTTGTGTAGTAGCGA 60.366 47.826 0.00 0.00 0.00 4.93
2325 3915 2.666994 GCGTCCTTCTTTGTGTAGTAGC 59.333 50.000 0.00 0.00 0.00 3.58
2351 3941 6.337356 AGGTTTCGATGAAAAAGAGCAAAAA 58.663 32.000 0.00 0.00 33.14 1.94
2352 3942 5.901552 AGGTTTCGATGAAAAAGAGCAAAA 58.098 33.333 0.00 0.00 33.14 2.44
2353 3943 5.514274 AGGTTTCGATGAAAAAGAGCAAA 57.486 34.783 0.00 0.00 33.14 3.68
2354 3944 5.163561 ACAAGGTTTCGATGAAAAAGAGCAA 60.164 36.000 0.00 0.00 33.14 3.91
2355 3945 4.338118 ACAAGGTTTCGATGAAAAAGAGCA 59.662 37.500 0.00 0.00 33.14 4.26
2356 3946 4.676924 CACAAGGTTTCGATGAAAAAGAGC 59.323 41.667 0.00 0.00 33.14 4.09
2357 3947 6.060028 TCACAAGGTTTCGATGAAAAAGAG 57.940 37.500 0.00 0.00 33.14 2.85
2358 3948 6.262601 GTTCACAAGGTTTCGATGAAAAAGA 58.737 36.000 0.00 0.00 33.14 2.52
2359 3949 5.171337 CGTTCACAAGGTTTCGATGAAAAAG 59.829 40.000 0.00 0.00 33.14 2.27
2360 3950 5.031578 CGTTCACAAGGTTTCGATGAAAAA 58.968 37.500 0.00 0.00 33.14 1.94
2361 3951 4.496673 CCGTTCACAAGGTTTCGATGAAAA 60.497 41.667 0.00 0.00 33.14 2.29
2362 3952 3.002862 CCGTTCACAAGGTTTCGATGAAA 59.997 43.478 0.00 0.00 31.45 2.69
2363 3953 2.546368 CCGTTCACAAGGTTTCGATGAA 59.454 45.455 0.00 0.00 0.00 2.57
2364 3954 2.139917 CCGTTCACAAGGTTTCGATGA 58.860 47.619 0.00 0.00 0.00 2.92
2365 3955 2.096417 GTCCGTTCACAAGGTTTCGATG 60.096 50.000 0.00 0.00 0.00 3.84
2366 3956 2.140717 GTCCGTTCACAAGGTTTCGAT 58.859 47.619 0.00 0.00 0.00 3.59
2367 3957 1.134759 TGTCCGTTCACAAGGTTTCGA 60.135 47.619 0.00 0.00 0.00 3.71
2368 3958 1.292061 TGTCCGTTCACAAGGTTTCG 58.708 50.000 0.00 0.00 0.00 3.46
2369 3959 5.427036 TTTATGTCCGTTCACAAGGTTTC 57.573 39.130 0.00 0.00 0.00 2.78
2370 3960 5.838531 TTTTATGTCCGTTCACAAGGTTT 57.161 34.783 0.00 0.00 0.00 3.27
2371 3961 5.300792 ACATTTTATGTCCGTTCACAAGGTT 59.699 36.000 0.00 0.00 39.92 3.50
2372 3962 4.825085 ACATTTTATGTCCGTTCACAAGGT 59.175 37.500 0.00 0.00 39.92 3.50
2373 3963 5.371115 ACATTTTATGTCCGTTCACAAGG 57.629 39.130 0.00 0.00 39.92 3.61
2386 3976 5.444087 CGCGTGTATATCCGGACATTTTATG 60.444 44.000 6.12 0.00 0.00 1.90
2387 3977 4.624024 CGCGTGTATATCCGGACATTTTAT 59.376 41.667 6.12 2.53 0.00 1.40
2388 3978 3.982701 CGCGTGTATATCCGGACATTTTA 59.017 43.478 6.12 0.00 0.00 1.52
2389 3979 2.798283 CGCGTGTATATCCGGACATTTT 59.202 45.455 6.12 0.00 0.00 1.82
2390 3980 2.400399 CGCGTGTATATCCGGACATTT 58.600 47.619 6.12 0.00 0.00 2.32
2391 3981 1.336517 CCGCGTGTATATCCGGACATT 60.337 52.381 6.12 0.00 43.20 2.71
2392 3982 0.242825 CCGCGTGTATATCCGGACAT 59.757 55.000 6.12 2.01 43.20 3.06
2393 3983 1.655885 CCGCGTGTATATCCGGACA 59.344 57.895 6.12 0.00 43.20 4.02
2394 3984 1.080974 CCCGCGTGTATATCCGGAC 60.081 63.158 6.12 0.00 43.20 4.79
2395 3985 0.609957 ATCCCGCGTGTATATCCGGA 60.610 55.000 6.61 6.61 43.20 5.14
2396 3986 0.245539 AATCCCGCGTGTATATCCGG 59.754 55.000 4.92 0.00 40.39 5.14
2397 3987 2.074547 AAATCCCGCGTGTATATCCG 57.925 50.000 4.92 0.00 0.00 4.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.