Multiple sequence alignment - TraesCS6D01G029700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G029700 chr6D 100.000 9632 0 0 1 9632 11666478 11656847 0.000000e+00 17788.0
1 TraesCS6D01G029700 chr6D 90.633 1975 101 30 2137 4068 11741843 11743776 0.000000e+00 2545.0
2 TraesCS6D01G029700 chr6D 91.373 1588 117 9 6362 7944 11746417 11747989 0.000000e+00 2156.0
3 TraesCS6D01G029700 chr6D 89.230 1467 87 34 701 2137 11740374 11741799 0.000000e+00 1768.0
4 TraesCS6D01G029700 chr6D 87.733 1557 117 21 4819 6337 11744899 11746419 0.000000e+00 1749.0
5 TraesCS6D01G029700 chr6D 92.948 1177 74 8 7939 9109 11748022 11749195 0.000000e+00 1705.0
6 TraesCS6D01G029700 chr6D 92.257 917 50 12 4309 5206 11726313 11727227 0.000000e+00 1280.0
7 TraesCS6D01G029700 chr6D 94.959 734 32 5 4063 4793 11744170 11744901 0.000000e+00 1146.0
8 TraesCS6D01G029700 chr6D 86.108 1015 80 36 482 1474 11728236 11729211 0.000000e+00 1037.0
9 TraesCS6D01G029700 chr6D 88.196 449 25 12 3865 4312 11725859 11726280 2.400000e-140 510.0
10 TraesCS6D01G029700 chr6D 90.909 99 9 0 3 101 11570523 11570425 6.070000e-27 134.0
11 TraesCS6D01G029700 chr6D 92.308 39 3 0 624 662 11665802 11665764 1.000000e-03 56.5
12 TraesCS6D01G029700 chr6D 92.308 39 3 0 677 715 11665855 11665817 1.000000e-03 56.5
13 TraesCS6D01G029700 chr5A 90.881 5801 388 61 2235 7944 591014068 591019818 0.000000e+00 7651.0
14 TraesCS6D01G029700 chr5A 92.105 1178 79 9 7939 9109 591019851 591021021 0.000000e+00 1648.0
15 TraesCS6D01G029700 chr5A 88.446 978 64 14 969 1924 591012846 591013796 0.000000e+00 1134.0
16 TraesCS6D01G029700 chr5A 89.783 323 19 9 657 975 591012511 591012823 1.510000e-107 401.0
17 TraesCS6D01G029700 chr5A 90.952 210 18 1 462 670 591012347 591012556 2.050000e-71 281.0
18 TraesCS6D01G029700 chr5A 88.043 184 20 2 1956 2137 591013774 591013957 5.860000e-52 217.0
19 TraesCS6D01G029700 chr6A 90.461 4948 342 62 2151 7017 13010326 13015224 0.000000e+00 6403.0
20 TraesCS6D01G029700 chr6A 88.881 1430 102 29 661 2068 13008947 13010341 0.000000e+00 1707.0
21 TraesCS6D01G029700 chr6A 91.929 1177 83 8 7939 9109 13018366 13019536 0.000000e+00 1637.0
22 TraesCS6D01G029700 chr6A 93.804 694 43 0 7013 7706 13017334 13018027 0.000000e+00 1044.0
23 TraesCS6D01G029700 chr6A 81.302 845 112 24 811 1616 13043273 13044110 2.270000e-180 643.0
24 TraesCS6D01G029700 chr6A 92.405 237 16 2 7710 7944 13018097 13018333 4.310000e-88 337.0
25 TraesCS6D01G029700 chr6A 79.339 484 45 19 416 876 13042809 13043260 1.220000e-73 289.0
26 TraesCS6D01G029700 chr6A 98.462 65 1 0 550 614 13008402 13008466 2.200000e-21 115.0
27 TraesCS6D01G029700 chr6A 90.741 54 4 1 7739 7791 13018021 13018074 4.830000e-08 71.3
28 TraesCS6D01G029700 chr6B 92.341 3212 166 42 2134 5275 21375388 21378589 0.000000e+00 4495.0
29 TraesCS6D01G029700 chr6B 85.978 2168 202 45 4312 6415 21582479 21580350 0.000000e+00 2226.0
30 TraesCS6D01G029700 chr6B 89.933 1500 135 10 6449 7945 21496583 21495097 0.000000e+00 1919.0
31 TraesCS6D01G029700 chr6B 89.000 1500 153 9 6449 7945 21580345 21578855 0.000000e+00 1845.0
32 TraesCS6D01G029700 chr6B 92.445 1178 75 9 7939 9109 21401248 21402418 0.000000e+00 1670.0
33 TraesCS6D01G029700 chr6B 89.770 1173 92 16 7945 9109 21495059 21493907 0.000000e+00 1476.0
34 TraesCS6D01G029700 chr6B 89.140 1197 101 10 5695 6887 21378654 21379825 0.000000e+00 1463.0
35 TraesCS6D01G029700 chr6B 89.623 1166 88 19 692 1831 21373620 21374778 0.000000e+00 1452.0
36 TraesCS6D01G029700 chr6B 88.652 1172 102 15 7945 9109 21578817 21577670 0.000000e+00 1399.0
37 TraesCS6D01G029700 chr6B 90.135 1034 69 17 3309 4312 21583545 21582515 0.000000e+00 1314.0
38 TraesCS6D01G029700 chr6B 87.362 1084 124 10 5335 6415 21497661 21496588 0.000000e+00 1230.0
39 TraesCS6D01G029700 chr6B 87.455 829 66 7 966 1777 21585232 21584425 0.000000e+00 920.0
40 TraesCS6D01G029700 chr6B 91.506 518 38 5 7430 7944 21400701 21401215 0.000000e+00 708.0
41 TraesCS6D01G029700 chr6B 88.352 455 36 8 2375 2814 21584398 21583946 1.840000e-146 531.0
42 TraesCS6D01G029700 chr6B 84.878 410 40 7 2855 3264 21583935 21583548 2.520000e-105 394.0
43 TraesCS6D01G029700 chr6B 93.671 237 13 2 6884 7120 21400468 21400702 4.280000e-93 353.0
44 TraesCS6D01G029700 chr6B 86.842 304 30 3 348 642 21373341 21373643 2.010000e-86 331.0
45 TraesCS6D01G029700 chr6B 90.726 248 20 3 94 340 21354834 21355079 2.590000e-85 327.0
46 TraesCS6D01G029700 chr6B 81.931 321 42 12 3287 3597 417237047 417237361 3.450000e-64 257.0
47 TraesCS6D01G029700 chr5D 97.901 524 11 0 9109 9632 88953062 88953585 0.000000e+00 907.0
48 TraesCS6D01G029700 chr5D 97.524 525 13 0 9108 9632 434648998 434648474 0.000000e+00 898.0
49 TraesCS6D01G029700 chr5D 96.840 538 14 3 9096 9632 10886873 10886338 0.000000e+00 896.0
50 TraesCS6D01G029700 chr5D 80.861 418 61 17 3202 3602 461908198 461908613 2.610000e-80 311.0
51 TraesCS6D01G029700 chr7D 97.897 523 11 0 9110 9632 169055589 169056111 0.000000e+00 905.0
52 TraesCS6D01G029700 chr7D 97.706 523 12 0 9110 9632 268161730 268161208 0.000000e+00 900.0
53 TraesCS6D01G029700 chr7D 97.706 523 12 0 9110 9632 596641812 596641290 0.000000e+00 900.0
54 TraesCS6D01G029700 chr4D 97.897 523 11 0 9110 9632 416403243 416403765 0.000000e+00 905.0
55 TraesCS6D01G029700 chr4D 97.706 523 12 0 9110 9632 346913044 346913566 0.000000e+00 900.0
56 TraesCS6D01G029700 chr1D 96.992 532 15 1 9101 9632 458379387 458379917 0.000000e+00 893.0
57 TraesCS6D01G029700 chrUn 81.481 351 50 13 3207 3544 24653409 24653061 3.430000e-69 274.0
58 TraesCS6D01G029700 chr5B 78.161 348 66 10 3205 3544 314290044 314290389 7.580000e-51 213.0
59 TraesCS6D01G029700 chr3A 78.235 170 34 3 6365 6532 664934415 664934583 1.320000e-18 106.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G029700 chr6D 11656847 11666478 9631 True 5967.000000 17788 94.872000 1 9632 3 chr6D.!!$R2 9631
1 TraesCS6D01G029700 chr6D 11740374 11749195 8821 False 1844.833333 2545 91.146000 701 9109 6 chr6D.!!$F2 8408
2 TraesCS6D01G029700 chr6D 11725859 11729211 3352 False 942.333333 1280 88.853667 482 5206 3 chr6D.!!$F1 4724
3 TraesCS6D01G029700 chr5A 591012347 591021021 8674 False 1888.666667 7651 90.035000 462 9109 6 chr5A.!!$F1 8647
4 TraesCS6D01G029700 chr6A 13008402 13019536 11134 False 1616.328571 6403 92.383286 550 9109 7 chr6A.!!$F1 8559
5 TraesCS6D01G029700 chr6A 13042809 13044110 1301 False 466.000000 643 80.320500 416 1616 2 chr6A.!!$F2 1200
6 TraesCS6D01G029700 chr6B 21373341 21379825 6484 False 1935.250000 4495 89.486500 348 6887 4 chr6B.!!$F3 6539
7 TraesCS6D01G029700 chr6B 21493907 21497661 3754 True 1541.666667 1919 89.021667 5335 9109 3 chr6B.!!$R1 3774
8 TraesCS6D01G029700 chr6B 21577670 21585232 7562 True 1232.714286 2226 87.778571 966 9109 7 chr6B.!!$R2 8143
9 TraesCS6D01G029700 chr6B 21400468 21402418 1950 False 910.333333 1670 92.540667 6884 9109 3 chr6B.!!$F4 2225
10 TraesCS6D01G029700 chr5D 88953062 88953585 523 False 907.000000 907 97.901000 9109 9632 1 chr5D.!!$F1 523
11 TraesCS6D01G029700 chr5D 434648474 434648998 524 True 898.000000 898 97.524000 9108 9632 1 chr5D.!!$R2 524
12 TraesCS6D01G029700 chr5D 10886338 10886873 535 True 896.000000 896 96.840000 9096 9632 1 chr5D.!!$R1 536
13 TraesCS6D01G029700 chr7D 169055589 169056111 522 False 905.000000 905 97.897000 9110 9632 1 chr7D.!!$F1 522
14 TraesCS6D01G029700 chr7D 268161208 268161730 522 True 900.000000 900 97.706000 9110 9632 1 chr7D.!!$R1 522
15 TraesCS6D01G029700 chr7D 596641290 596641812 522 True 900.000000 900 97.706000 9110 9632 1 chr7D.!!$R2 522
16 TraesCS6D01G029700 chr4D 416403243 416403765 522 False 905.000000 905 97.897000 9110 9632 1 chr4D.!!$F2 522
17 TraesCS6D01G029700 chr4D 346913044 346913566 522 False 900.000000 900 97.706000 9110 9632 1 chr4D.!!$F1 522
18 TraesCS6D01G029700 chr1D 458379387 458379917 530 False 893.000000 893 96.992000 9101 9632 1 chr1D.!!$F1 531

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
107 108 0.095935 GCACATGTGTTCTAGCGCAG 59.904 55.000 26.01 5.22 32.03 5.18 F
409 410 0.178891 ATGGAGGAGGTGAGTGGTGT 60.179 55.000 0.00 0.00 0.00 4.16 F
1154 1771 0.688487 TGCGGCTACAAAGGTACCTT 59.312 50.000 21.96 21.96 37.98 3.50 F
1751 2419 0.744057 TGTGGCTGCATCGTACATGG 60.744 55.000 0.50 0.00 0.00 3.66 F
1870 2605 1.084289 GCGAGTGCCCGTCTTAATTT 58.916 50.000 0.00 0.00 33.98 1.82 F
2062 2804 1.131126 CGCTGGCCAAAAGTATGTCTG 59.869 52.381 7.01 0.00 0.00 3.51 F
3669 4717 0.533755 CCCGGCACATCTGGAGATTC 60.534 60.000 0.00 0.00 44.37 2.52 F
3670 4718 0.533755 CCGGCACATCTGGAGATTCC 60.534 60.000 0.00 0.00 44.37 3.01 F
4800 6373 0.324943 ACAATGCTAAGCCGGTGACT 59.675 50.000 1.90 0.00 0.00 3.41 F
5176 6774 0.037590 AGGGTTGTGTGTGTGTGTGT 59.962 50.000 0.00 0.00 0.00 3.72 F
5865 8437 0.250166 ACCTTTCCTGACCCGAAACG 60.250 55.000 0.00 0.00 0.00 3.60 F
6842 9432 0.102481 GGCAAGTTATCCTCGCTCGA 59.898 55.000 0.00 0.00 0.00 4.04 F
8068 12882 0.796312 AGTCATAAACGTGGCTTGCG 59.204 50.000 0.00 0.00 27.30 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1154 1771 0.394192 CAGATCTAAGATGGCCGCCA 59.606 55.0 16.17 16.17 38.19 5.69 R
2188 3177 0.179032 TCCAGCTCAGCGGAAAAACA 60.179 50.0 7.66 0.00 31.04 2.83 R
2600 3614 0.698238 TTCACATAAGGCCCACTGCT 59.302 50.0 0.00 0.00 40.92 4.24 R
3580 4626 0.846693 AGTGAGGTGTTTTGGCTCCT 59.153 50.0 0.00 0.00 35.32 3.69 R
3655 4703 2.240667 ACAAGGGGAATCTCCAGATGTG 59.759 50.0 0.32 0.00 38.64 3.21 R
3882 4953 0.972883 AGAGCAGCTCGGAAGTTTCT 59.027 50.0 16.99 0.00 35.36 2.52 R
4513 6075 0.607489 ATGTGCTCACCAGCCAAGAC 60.607 55.0 0.00 0.00 46.26 3.01 R
5058 6646 0.729690 GAAGAGAAATGAGGTGCGCC 59.270 55.0 8.71 8.71 0.00 6.53 R
6469 9052 0.036483 GCCATTGGCCAAATTCCGTT 60.036 50.0 24.71 0.00 44.06 4.44 R
6842 9432 0.106116 GACGTATGAGGGAGGGGTCT 60.106 60.0 0.00 0.00 0.00 3.85 R
7326 12031 1.119684 GGGAGGAGAGAAGGAAGAGC 58.880 60.0 0.00 0.00 0.00 4.09 R
8217 13031 0.681887 TCGACGTAGGCTTGGGATGA 60.682 55.0 0.00 0.00 0.00 2.92 R
9545 14377 0.043637 ATTAGGGGGTCCTCGGACAA 59.956 55.0 17.21 3.69 46.20 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 3.878778 CCCAAATGTTTTGTTTCCACCA 58.121 40.909 0.00 0.00 0.00 4.17
22 23 4.459330 CCCAAATGTTTTGTTTCCACCAT 58.541 39.130 0.00 0.00 0.00 3.55
23 24 4.275443 CCCAAATGTTTTGTTTCCACCATG 59.725 41.667 0.00 0.00 0.00 3.66
24 25 4.261114 CCAAATGTTTTGTTTCCACCATGC 60.261 41.667 0.00 0.00 0.00 4.06
25 26 3.834489 ATGTTTTGTTTCCACCATGCA 57.166 38.095 0.00 0.00 0.00 3.96
26 27 2.898705 TGTTTTGTTTCCACCATGCAC 58.101 42.857 0.00 0.00 0.00 4.57
27 28 2.209273 GTTTTGTTTCCACCATGCACC 58.791 47.619 0.00 0.00 0.00 5.01
28 29 1.489481 TTTGTTTCCACCATGCACCA 58.511 45.000 0.00 0.00 0.00 4.17
29 30 0.749649 TTGTTTCCACCATGCACCAC 59.250 50.000 0.00 0.00 0.00 4.16
30 31 0.396278 TGTTTCCACCATGCACCACA 60.396 50.000 0.00 0.00 0.00 4.17
31 32 0.749649 GTTTCCACCATGCACCACAA 59.250 50.000 0.00 0.00 0.00 3.33
32 33 0.749649 TTTCCACCATGCACCACAAC 59.250 50.000 0.00 0.00 0.00 3.32
33 34 0.396278 TTCCACCATGCACCACAACA 60.396 50.000 0.00 0.00 0.00 3.33
34 35 0.178967 TCCACCATGCACCACAACAT 60.179 50.000 0.00 0.00 0.00 2.71
35 36 0.680618 CCACCATGCACCACAACATT 59.319 50.000 0.00 0.00 0.00 2.71
36 37 1.891811 CCACCATGCACCACAACATTA 59.108 47.619 0.00 0.00 0.00 1.90
37 38 2.094597 CCACCATGCACCACAACATTAG 60.095 50.000 0.00 0.00 0.00 1.73
38 39 2.557924 CACCATGCACCACAACATTAGT 59.442 45.455 0.00 0.00 0.00 2.24
39 40 2.557924 ACCATGCACCACAACATTAGTG 59.442 45.455 0.00 0.00 36.76 2.74
40 41 2.819019 CCATGCACCACAACATTAGTGA 59.181 45.455 0.00 0.00 39.30 3.41
41 42 3.444742 CCATGCACCACAACATTAGTGAT 59.555 43.478 0.00 0.00 39.30 3.06
42 43 4.417506 CATGCACCACAACATTAGTGATG 58.582 43.478 0.00 0.00 39.30 3.07
73 74 9.469807 TTTATGAAATTTGATTACACGTTTGCT 57.530 25.926 0.00 0.00 0.00 3.91
89 90 7.749126 ACACGTTTGCTATATTTTTAGACAAGC 59.251 33.333 0.00 0.00 0.00 4.01
90 91 7.748683 CACGTTTGCTATATTTTTAGACAAGCA 59.251 33.333 0.00 0.00 36.76 3.91
91 92 7.749126 ACGTTTGCTATATTTTTAGACAAGCAC 59.251 33.333 0.00 0.00 38.15 4.40
92 93 7.748683 CGTTTGCTATATTTTTAGACAAGCACA 59.251 33.333 0.00 0.00 38.15 4.57
93 94 9.573133 GTTTGCTATATTTTTAGACAAGCACAT 57.427 29.630 0.00 0.00 38.15 3.21
94 95 9.571810 TTTGCTATATTTTTAGACAAGCACATG 57.428 29.630 0.00 0.00 38.15 3.21
95 96 8.279970 TGCTATATTTTTAGACAAGCACATGT 57.720 30.769 0.00 0.00 33.84 3.21
96 97 8.183536 TGCTATATTTTTAGACAAGCACATGTG 58.816 33.333 21.83 21.83 33.84 3.21
97 98 8.184192 GCTATATTTTTAGACAAGCACATGTGT 58.816 33.333 26.01 10.99 32.57 3.72
99 100 8.970691 ATATTTTTAGACAAGCACATGTGTTC 57.029 30.769 26.01 16.66 32.57 3.18
100 101 6.449635 TTTTTAGACAAGCACATGTGTTCT 57.550 33.333 26.01 21.71 32.57 3.01
101 102 7.561021 TTTTTAGACAAGCACATGTGTTCTA 57.439 32.000 26.01 20.84 32.57 2.10
102 103 6.785488 TTTAGACAAGCACATGTGTTCTAG 57.215 37.500 26.01 15.82 32.57 2.43
103 104 3.070018 AGACAAGCACATGTGTTCTAGC 58.930 45.455 26.01 11.38 32.57 3.42
104 105 1.800586 ACAAGCACATGTGTTCTAGCG 59.199 47.619 26.01 10.89 30.82 4.26
105 106 0.798776 AAGCACATGTGTTCTAGCGC 59.201 50.000 26.01 9.90 0.00 5.92
106 107 0.320683 AGCACATGTGTTCTAGCGCA 60.321 50.000 26.01 0.00 0.00 6.09
107 108 0.095935 GCACATGTGTTCTAGCGCAG 59.904 55.000 26.01 5.22 32.03 5.18
108 109 1.713597 CACATGTGTTCTAGCGCAGA 58.286 50.000 18.03 7.90 32.03 4.26
109 110 1.657594 CACATGTGTTCTAGCGCAGAG 59.342 52.381 18.03 6.58 33.83 3.35
120 121 2.180017 CGCAGAGCACAAATGGGC 59.820 61.111 0.00 0.00 46.94 5.36
127 128 3.520187 GCACAAATGGGCTTCCTTG 57.480 52.632 0.00 0.00 42.27 3.61
128 129 0.671472 GCACAAATGGGCTTCCTTGC 60.671 55.000 0.00 0.00 42.27 4.01
129 130 0.388907 CACAAATGGGCTTCCTTGCG 60.389 55.000 0.00 0.00 0.00 4.85
130 131 1.216178 CAAATGGGCTTCCTTGCGG 59.784 57.895 0.00 0.00 0.00 5.69
131 132 1.984026 AAATGGGCTTCCTTGCGGG 60.984 57.895 0.00 0.00 0.00 6.13
132 133 2.439553 AAATGGGCTTCCTTGCGGGA 62.440 55.000 0.00 0.00 43.41 5.14
133 134 2.843912 AATGGGCTTCCTTGCGGGAG 62.844 60.000 0.00 0.00 46.01 4.30
151 152 3.256620 GCAAGGTTGTGCTTCACAC 57.743 52.632 0.00 0.00 44.47 3.82
158 159 0.753867 TTGTGCTTCACACCGTAGGA 59.246 50.000 0.00 0.00 46.42 2.94
159 160 0.317160 TGTGCTTCACACCGTAGGAG 59.683 55.000 0.00 0.00 46.05 3.69
160 161 3.625318 TGTGCTTCACACCGTAGGAGC 62.625 57.143 0.00 0.00 46.05 4.70
175 176 6.149504 CGTAGGAGCACAAGTTAGTTTTAC 57.850 41.667 0.00 0.00 0.00 2.01
176 177 5.924825 CGTAGGAGCACAAGTTAGTTTTACT 59.075 40.000 0.00 0.00 0.00 2.24
177 178 6.128902 CGTAGGAGCACAAGTTAGTTTTACTG 60.129 42.308 0.00 0.00 0.00 2.74
178 179 5.063880 AGGAGCACAAGTTAGTTTTACTGG 58.936 41.667 0.00 0.00 0.00 4.00
179 180 5.061179 GGAGCACAAGTTAGTTTTACTGGA 58.939 41.667 0.00 0.00 0.00 3.86
180 181 5.179555 GGAGCACAAGTTAGTTTTACTGGAG 59.820 44.000 0.00 0.00 0.00 3.86
181 182 5.925509 AGCACAAGTTAGTTTTACTGGAGA 58.074 37.500 0.00 0.00 0.00 3.71
182 183 5.992217 AGCACAAGTTAGTTTTACTGGAGAG 59.008 40.000 0.00 0.00 0.00 3.20
183 184 5.334182 GCACAAGTTAGTTTTACTGGAGAGC 60.334 44.000 0.00 0.00 0.00 4.09
184 185 5.758296 CACAAGTTAGTTTTACTGGAGAGCA 59.242 40.000 0.00 0.00 0.00 4.26
185 186 5.758784 ACAAGTTAGTTTTACTGGAGAGCAC 59.241 40.000 0.00 0.00 0.00 4.40
186 187 5.546621 AGTTAGTTTTACTGGAGAGCACA 57.453 39.130 0.00 0.00 0.00 4.57
187 188 5.925509 AGTTAGTTTTACTGGAGAGCACAA 58.074 37.500 0.00 0.00 0.00 3.33
188 189 5.992217 AGTTAGTTTTACTGGAGAGCACAAG 59.008 40.000 0.00 0.00 0.00 3.16
189 190 4.423625 AGTTTTACTGGAGAGCACAAGT 57.576 40.909 0.00 0.00 0.00 3.16
190 191 4.781934 AGTTTTACTGGAGAGCACAAGTT 58.218 39.130 0.00 0.00 0.00 2.66
191 192 5.925509 AGTTTTACTGGAGAGCACAAGTTA 58.074 37.500 0.00 0.00 0.00 2.24
192 193 5.992217 AGTTTTACTGGAGAGCACAAGTTAG 59.008 40.000 0.00 0.00 0.00 2.34
193 194 5.546621 TTTACTGGAGAGCACAAGTTAGT 57.453 39.130 0.00 0.00 0.00 2.24
194 195 6.659745 TTTACTGGAGAGCACAAGTTAGTA 57.340 37.500 0.00 0.00 0.00 1.82
195 196 4.522722 ACTGGAGAGCACAAGTTAGTAC 57.477 45.455 0.00 0.00 0.00 2.73
196 197 3.895656 ACTGGAGAGCACAAGTTAGTACA 59.104 43.478 0.00 0.00 0.00 2.90
197 198 4.344102 ACTGGAGAGCACAAGTTAGTACAA 59.656 41.667 0.00 0.00 0.00 2.41
198 199 5.012148 ACTGGAGAGCACAAGTTAGTACAAT 59.988 40.000 0.00 0.00 0.00 2.71
199 200 5.865085 TGGAGAGCACAAGTTAGTACAATT 58.135 37.500 0.00 0.00 0.00 2.32
200 201 6.296026 TGGAGAGCACAAGTTAGTACAATTT 58.704 36.000 0.00 0.00 0.00 1.82
201 202 6.426937 TGGAGAGCACAAGTTAGTACAATTTC 59.573 38.462 0.00 0.00 0.00 2.17
202 203 6.651225 GGAGAGCACAAGTTAGTACAATTTCT 59.349 38.462 0.00 0.00 0.00 2.52
203 204 7.817962 GGAGAGCACAAGTTAGTACAATTTCTA 59.182 37.037 0.00 0.00 0.00 2.10
204 205 9.204570 GAGAGCACAAGTTAGTACAATTTCTAA 57.795 33.333 0.00 0.00 0.00 2.10
205 206 9.209175 AGAGCACAAGTTAGTACAATTTCTAAG 57.791 33.333 0.00 0.00 0.00 2.18
206 207 7.807680 AGCACAAGTTAGTACAATTTCTAAGC 58.192 34.615 0.00 0.00 0.00 3.09
207 208 7.444183 AGCACAAGTTAGTACAATTTCTAAGCA 59.556 33.333 0.00 0.00 0.00 3.91
208 209 7.534239 GCACAAGTTAGTACAATTTCTAAGCAC 59.466 37.037 0.00 0.00 0.00 4.40
209 210 8.556194 CACAAGTTAGTACAATTTCTAAGCACA 58.444 33.333 0.00 0.00 0.00 4.57
210 211 9.284968 ACAAGTTAGTACAATTTCTAAGCACAT 57.715 29.630 0.00 0.00 0.00 3.21
244 245 5.713792 TTTTGGAGCATAATTTTCACCGA 57.286 34.783 0.00 0.00 0.00 4.69
245 246 5.713792 TTTGGAGCATAATTTTCACCGAA 57.286 34.783 0.00 0.00 0.00 4.30
246 247 5.713792 TTGGAGCATAATTTTCACCGAAA 57.286 34.783 0.00 0.00 0.00 3.46
247 248 5.713792 TGGAGCATAATTTTCACCGAAAA 57.286 34.783 4.50 4.50 44.04 2.29
248 249 6.090483 TGGAGCATAATTTTCACCGAAAAA 57.910 33.333 6.03 0.00 43.32 1.94
249 250 6.696411 TGGAGCATAATTTTCACCGAAAAAT 58.304 32.000 6.03 1.13 43.32 1.82
250 251 7.831753 TGGAGCATAATTTTCACCGAAAAATA 58.168 30.769 6.03 3.24 43.32 1.40
251 252 8.474025 TGGAGCATAATTTTCACCGAAAAATAT 58.526 29.630 6.03 5.26 43.32 1.28
252 253 9.313118 GGAGCATAATTTTCACCGAAAAATATT 57.687 29.630 6.03 0.22 43.32 1.28
254 255 9.313118 AGCATAATTTTCACCGAAAAATATTCC 57.687 29.630 6.03 2.77 43.32 3.01
255 256 9.092876 GCATAATTTTCACCGAAAAATATTCCA 57.907 29.630 6.03 0.00 43.32 3.53
258 259 8.716646 AATTTTCACCGAAAAATATTCCATCC 57.283 30.769 6.03 0.00 43.32 3.51
259 260 6.842437 TTTCACCGAAAAATATTCCATCCA 57.158 33.333 0.00 0.00 0.00 3.41
260 261 6.842437 TTCACCGAAAAATATTCCATCCAA 57.158 33.333 0.00 0.00 0.00 3.53
261 262 6.842437 TCACCGAAAAATATTCCATCCAAA 57.158 33.333 0.00 0.00 0.00 3.28
262 263 6.626302 TCACCGAAAAATATTCCATCCAAAC 58.374 36.000 0.00 0.00 0.00 2.93
263 264 5.810074 CACCGAAAAATATTCCATCCAAACC 59.190 40.000 0.00 0.00 0.00 3.27
264 265 5.719563 ACCGAAAAATATTCCATCCAAACCT 59.280 36.000 0.00 0.00 0.00 3.50
265 266 6.212589 ACCGAAAAATATTCCATCCAAACCTT 59.787 34.615 0.00 0.00 0.00 3.50
266 267 7.102993 CCGAAAAATATTCCATCCAAACCTTT 58.897 34.615 0.00 0.00 0.00 3.11
267 268 8.254508 CCGAAAAATATTCCATCCAAACCTTTA 58.745 33.333 0.00 0.00 0.00 1.85
268 269 9.646427 CGAAAAATATTCCATCCAAACCTTTAA 57.354 29.630 0.00 0.00 0.00 1.52
273 274 9.889128 AATATTCCATCCAAACCTTTAAACATG 57.111 29.630 0.00 0.00 0.00 3.21
274 275 5.736951 TCCATCCAAACCTTTAAACATGG 57.263 39.130 0.00 0.00 0.00 3.66
275 276 4.530161 TCCATCCAAACCTTTAAACATGGG 59.470 41.667 0.00 0.00 32.01 4.00
276 277 4.530161 CCATCCAAACCTTTAAACATGGGA 59.470 41.667 0.00 0.00 0.00 4.37
277 278 5.012561 CCATCCAAACCTTTAAACATGGGAA 59.987 40.000 0.00 0.00 0.00 3.97
278 279 5.538849 TCCAAACCTTTAAACATGGGAAC 57.461 39.130 0.00 0.00 0.00 3.62
279 280 5.212745 TCCAAACCTTTAAACATGGGAACT 58.787 37.500 0.00 0.00 0.00 3.01
280 281 6.374588 TCCAAACCTTTAAACATGGGAACTA 58.625 36.000 0.00 0.00 0.00 2.24
281 282 6.839657 TCCAAACCTTTAAACATGGGAACTAA 59.160 34.615 0.00 0.00 0.00 2.24
282 283 7.511028 TCCAAACCTTTAAACATGGGAACTAAT 59.489 33.333 0.00 0.00 0.00 1.73
283 284 8.154203 CCAAACCTTTAAACATGGGAACTAATT 58.846 33.333 0.00 0.00 0.00 1.40
284 285 9.554395 CAAACCTTTAAACATGGGAACTAATTT 57.446 29.630 0.00 0.00 0.00 1.82
286 287 9.554395 AACCTTTAAACATGGGAACTAATTTTG 57.446 29.630 0.00 0.00 0.00 2.44
287 288 8.929487 ACCTTTAAACATGGGAACTAATTTTGA 58.071 29.630 0.00 0.00 0.00 2.69
288 289 9.771534 CCTTTAAACATGGGAACTAATTTTGAA 57.228 29.630 0.00 0.00 0.00 2.69
294 295 9.710900 AACATGGGAACTAATTTTGAAAATCTC 57.289 29.630 3.32 0.00 0.00 2.75
295 296 8.028938 ACATGGGAACTAATTTTGAAAATCTCG 58.971 33.333 3.32 0.00 0.00 4.04
296 297 7.753309 TGGGAACTAATTTTGAAAATCTCGA 57.247 32.000 3.32 0.00 0.00 4.04
297 298 8.348285 TGGGAACTAATTTTGAAAATCTCGAT 57.652 30.769 3.32 0.00 0.00 3.59
298 299 8.243426 TGGGAACTAATTTTGAAAATCTCGATG 58.757 33.333 3.32 0.00 0.00 3.84
299 300 7.220875 GGGAACTAATTTTGAAAATCTCGATGC 59.779 37.037 3.32 0.00 0.00 3.91
300 301 7.044706 GGAACTAATTTTGAAAATCTCGATGCG 60.045 37.037 3.32 0.00 0.00 4.73
301 302 7.072177 ACTAATTTTGAAAATCTCGATGCGA 57.928 32.000 3.32 0.00 0.00 5.10
315 316 3.479269 GCGAGAAGCGGAACCGTG 61.479 66.667 14.63 0.46 42.09 4.94
316 317 2.257371 CGAGAAGCGGAACCGTGA 59.743 61.111 14.63 0.00 42.09 4.35
317 318 1.372499 CGAGAAGCGGAACCGTGAA 60.372 57.895 14.63 0.00 42.09 3.18
318 319 0.942410 CGAGAAGCGGAACCGTGAAA 60.942 55.000 14.63 0.00 42.09 2.69
319 320 1.439679 GAGAAGCGGAACCGTGAAAT 58.560 50.000 14.63 0.00 42.09 2.17
320 321 1.804748 GAGAAGCGGAACCGTGAAATT 59.195 47.619 14.63 3.00 42.09 1.82
321 322 2.225727 GAGAAGCGGAACCGTGAAATTT 59.774 45.455 14.63 0.00 42.09 1.82
322 323 2.031157 AGAAGCGGAACCGTGAAATTTG 60.031 45.455 14.63 0.00 42.09 2.32
323 324 1.314730 AGCGGAACCGTGAAATTTGT 58.685 45.000 14.63 0.00 42.09 2.83
324 325 1.679153 AGCGGAACCGTGAAATTTGTT 59.321 42.857 14.63 0.00 42.09 2.83
325 326 2.048498 GCGGAACCGTGAAATTTGTTC 58.952 47.619 14.63 9.52 42.09 3.18
326 327 2.303537 CGGAACCGTGAAATTTGTTCG 58.696 47.619 4.99 0.00 38.34 3.95
327 328 2.286536 CGGAACCGTGAAATTTGTTCGT 60.287 45.455 4.99 0.00 38.34 3.85
328 329 3.040099 GGAACCGTGAAATTTGTTCGTG 58.960 45.455 0.00 0.00 38.34 4.35
329 330 3.242804 GGAACCGTGAAATTTGTTCGTGA 60.243 43.478 0.00 0.00 38.34 4.35
330 331 4.533222 GAACCGTGAAATTTGTTCGTGAT 58.467 39.130 0.00 0.00 0.00 3.06
331 332 4.561735 ACCGTGAAATTTGTTCGTGATT 57.438 36.364 0.00 0.00 0.00 2.57
332 333 4.927422 ACCGTGAAATTTGTTCGTGATTT 58.073 34.783 0.00 0.00 0.00 2.17
333 334 4.737765 ACCGTGAAATTTGTTCGTGATTTG 59.262 37.500 0.00 0.00 0.00 2.32
334 335 4.973051 CCGTGAAATTTGTTCGTGATTTGA 59.027 37.500 0.00 0.00 0.00 2.69
335 336 5.457148 CCGTGAAATTTGTTCGTGATTTGAA 59.543 36.000 0.00 0.00 0.00 2.69
336 337 6.143758 CCGTGAAATTTGTTCGTGATTTGAAT 59.856 34.615 0.00 0.00 0.00 2.57
337 338 6.997342 CGTGAAATTTGTTCGTGATTTGAATG 59.003 34.615 0.00 0.00 0.00 2.67
338 339 6.787043 GTGAAATTTGTTCGTGATTTGAATGC 59.213 34.615 0.00 0.00 0.00 3.56
339 340 6.478016 TGAAATTTGTTCGTGATTTGAATGCA 59.522 30.769 0.00 0.00 0.00 3.96
340 341 5.827568 ATTTGTTCGTGATTTGAATGCAC 57.172 34.783 0.00 0.00 0.00 4.57
341 342 3.978718 TGTTCGTGATTTGAATGCACA 57.021 38.095 0.00 0.00 32.96 4.57
342 343 4.502171 TGTTCGTGATTTGAATGCACAT 57.498 36.364 0.00 0.00 32.96 3.21
343 344 5.619625 TGTTCGTGATTTGAATGCACATA 57.380 34.783 0.00 0.00 32.96 2.29
344 345 6.193514 TGTTCGTGATTTGAATGCACATAT 57.806 33.333 0.00 0.00 32.96 1.78
345 346 6.619744 TGTTCGTGATTTGAATGCACATATT 58.380 32.000 0.00 0.00 32.96 1.28
346 347 7.756558 TGTTCGTGATTTGAATGCACATATTA 58.243 30.769 0.00 0.00 32.96 0.98
359 360 5.836347 TGCACATATTAGCTCTAGACACTG 58.164 41.667 0.00 0.00 0.00 3.66
379 380 3.660111 GTGCGGTGGTGGTTCTGC 61.660 66.667 0.00 0.00 36.59 4.26
409 410 0.178891 ATGGAGGAGGTGAGTGGTGT 60.179 55.000 0.00 0.00 0.00 4.16
414 415 1.748403 GAGGTGAGTGGTGTGAGCA 59.252 57.895 0.00 0.00 0.00 4.26
459 460 2.161030 GAACACGAGGTAGGAGACACT 58.839 52.381 0.00 0.00 0.00 3.55
478 479 1.198094 TGGCGAAGGGGATGAGTCAA 61.198 55.000 0.00 0.00 0.00 3.18
483 484 3.347216 CGAAGGGGATGAGTCAACAAAT 58.653 45.455 0.00 0.00 0.00 2.32
489 490 5.476945 AGGGGATGAGTCAACAAATACAAAC 59.523 40.000 0.00 0.00 0.00 2.93
491 492 6.071391 GGGGATGAGTCAACAAATACAAACAT 60.071 38.462 0.00 0.00 0.00 2.71
620 630 9.747898 ACATACTACATTAATTTGGAAGGTTGA 57.252 29.630 0.00 0.00 0.00 3.18
637 1114 8.725148 GGAAGGTTGATGCATTATATAGAGTTG 58.275 37.037 0.00 0.00 0.00 3.16
751 1228 5.796350 AAGCAACTGTTAATGGTACGATC 57.204 39.130 0.00 0.00 0.00 3.69
752 1229 5.086104 AGCAACTGTTAATGGTACGATCT 57.914 39.130 0.00 0.00 0.00 2.75
888 1472 1.613925 CTCCACTCTGTTTCGTGAGGA 59.386 52.381 0.00 0.00 34.84 3.71
1032 1649 2.747855 GCCTTCCCTTCTGGCGTG 60.748 66.667 0.00 0.00 37.11 5.34
1154 1771 0.688487 TGCGGCTACAAAGGTACCTT 59.312 50.000 21.96 21.96 37.98 3.50
1231 1854 4.160439 GTGAGATCTGGATCACCTTGTACA 59.840 45.833 0.00 0.00 39.94 2.90
1429 2059 3.364062 CGGTCATCAGTGAGTATTCGAC 58.636 50.000 0.00 0.00 34.36 4.20
1434 2064 5.457148 GTCATCAGTGAGTATTCGACATGTC 59.543 44.000 16.21 16.21 34.36 3.06
1615 2279 2.669924 CGCAATATCTGGATCCATGTCG 59.330 50.000 16.63 13.46 0.00 4.35
1616 2280 3.614870 CGCAATATCTGGATCCATGTCGA 60.615 47.826 16.63 9.54 0.00 4.20
1617 2281 3.681897 GCAATATCTGGATCCATGTCGAC 59.318 47.826 16.63 9.11 0.00 4.20
1685 2352 5.428253 AGGTGCGTCACATATGTTTCTAAT 58.572 37.500 5.37 0.00 35.86 1.73
1751 2419 0.744057 TGTGGCTGCATCGTACATGG 60.744 55.000 0.50 0.00 0.00 3.66
1831 2499 7.058023 ACATGCAAGCATTTCCATGTATATT 57.942 32.000 4.52 0.00 42.87 1.28
1832 2500 7.502696 ACATGCAAGCATTTCCATGTATATTT 58.497 30.769 4.52 0.00 42.87 1.40
1835 2569 8.870160 TGCAAGCATTTCCATGTATATTTTAC 57.130 30.769 0.00 0.00 32.28 2.01
1870 2605 1.084289 GCGAGTGCCCGTCTTAATTT 58.916 50.000 0.00 0.00 33.98 1.82
1918 2653 2.687200 AGGCATGCGTAGGTGGGA 60.687 61.111 11.96 0.00 0.00 4.37
1975 2717 4.415150 CCTGGGCATGGACGTGCT 62.415 66.667 15.32 0.00 44.45 4.40
2029 2771 4.406173 CGTCGTCCTCGCTGTGCT 62.406 66.667 0.00 0.00 36.96 4.40
2062 2804 1.131126 CGCTGGCCAAAAGTATGTCTG 59.869 52.381 7.01 0.00 0.00 3.51
2097 2840 2.625087 CCTCCAAATTGGCATCCTTCCT 60.625 50.000 7.24 0.00 37.47 3.36
2170 3159 5.049405 GCTGAAGTACTGTATGCAAGTGTTT 60.049 40.000 0.00 0.00 0.00 2.83
2195 3184 2.292916 GCCGCAGCGTGTGTTTTTC 61.293 57.895 15.05 0.00 0.00 2.29
2316 3305 6.125029 CCTTAGTTTGGATGGTCATCAGAAT 58.875 40.000 12.33 0.99 39.54 2.40
2402 3393 7.981225 AGTTCATGCTATTTGTTGACTGTTTTT 59.019 29.630 0.00 0.00 0.00 1.94
2485 3477 1.745087 GATTTCAATCGAGCTTGGCCA 59.255 47.619 0.00 0.00 0.00 5.36
2515 3507 1.489230 AGGACATTAAACTAGCCCCGG 59.511 52.381 0.00 0.00 0.00 5.73
2551 3544 2.027285 TGAAGGTGCGATTCCAATCAGA 60.027 45.455 0.40 0.00 35.11 3.27
2591 3605 1.170290 TTGACCGTCTCGACAGCTCA 61.170 55.000 0.00 0.00 0.00 4.26
2600 3614 1.668793 CGACAGCTCACCACATGCA 60.669 57.895 0.00 0.00 0.00 3.96
2654 3672 7.667575 TGCCTTATCCCTATCTATTCATCTC 57.332 40.000 0.00 0.00 0.00 2.75
2677 3708 1.291335 CCTACTCACCCCTCCTACCTT 59.709 57.143 0.00 0.00 0.00 3.50
3017 4049 9.077885 TCTTTGGCTAAAAGTGAAGTATCATTT 57.922 29.630 10.79 0.00 44.83 2.32
3027 4059 5.130477 AGTGAAGTATCATTTACGACCCCAT 59.870 40.000 0.00 0.00 38.01 4.00
3034 4066 4.399219 TCATTTACGACCCCATGAACAAA 58.601 39.130 0.00 0.00 0.00 2.83
3222 4255 4.040829 AGTCGAATATCCAATCATGAGCCA 59.959 41.667 0.09 0.00 0.00 4.75
3239 4272 1.838112 CCAAGGCTCATTTGCACCTA 58.162 50.000 0.00 0.00 34.04 3.08
3482 4525 6.740110 TGTTCTAAAATTTGGCACGTACATT 58.260 32.000 0.00 0.00 0.00 2.71
3580 4626 3.295093 CTCAAGGGCTCATCTGAGTCTA 58.705 50.000 11.29 0.00 45.60 2.59
3655 4703 1.451567 GGTTTCTCTAAGCCCCGGC 60.452 63.158 0.00 0.00 42.33 6.13
3663 4711 2.947938 CTAAGCCCCGGCACATCTGG 62.948 65.000 8.74 0.00 44.88 3.86
3669 4717 0.533755 CCCGGCACATCTGGAGATTC 60.534 60.000 0.00 0.00 44.37 2.52
3670 4718 0.533755 CCGGCACATCTGGAGATTCC 60.534 60.000 0.00 0.00 44.37 3.01
3671 4719 0.533755 CGGCACATCTGGAGATTCCC 60.534 60.000 0.00 0.00 35.03 3.97
3675 4723 2.928334 CACATCTGGAGATTCCCCTTG 58.072 52.381 0.00 0.00 35.03 3.61
3802 4873 2.734606 CGCTTTCGACCACAATACTTCA 59.265 45.455 0.00 0.00 38.10 3.02
3803 4874 3.185594 CGCTTTCGACCACAATACTTCAA 59.814 43.478 0.00 0.00 38.10 2.69
3808 4879 3.571571 CGACCACAATACTTCAAGTCGA 58.428 45.455 0.00 0.00 46.22 4.20
3815 4886 7.138736 CCACAATACTTCAAGTCGACAATTTT 58.861 34.615 19.50 0.00 0.00 1.82
3882 4953 4.971220 GGTAATTTCGCTTCGTTTTCAACA 59.029 37.500 0.00 0.00 0.00 3.33
3905 4976 3.402628 AACTTCCGAGCTGCTCTTTTA 57.597 42.857 25.59 8.83 0.00 1.52
3968 5040 7.968405 GGTACTACCAAGCAATTGATTTTACAG 59.032 37.037 10.34 6.14 38.42 2.74
3989 5061 6.017192 ACAGGGTACTTTCTGAGTCATTCTA 58.983 40.000 14.82 0.00 39.86 2.10
4388 5949 4.047883 ACTCCCCTTTCTTGCATACCTAT 58.952 43.478 0.00 0.00 0.00 2.57
4419 5980 7.401955 AGTTCATCTCTTTCATGAAATTCCC 57.598 36.000 20.76 4.93 40.99 3.97
4440 6001 1.056660 TTCTTGTGAGAGTGACCCCC 58.943 55.000 0.00 0.00 32.44 5.40
4513 6075 7.250569 TCAAGTGACTTTTCTTTGCTTGTTAG 58.749 34.615 0.00 0.00 34.99 2.34
4537 6099 3.861341 GCTGGTGAGCACATCCTAA 57.139 52.632 2.75 0.00 45.46 2.69
4576 6148 9.853555 CACTTGAGATCCTATCATGTTCTATAC 57.146 37.037 0.00 0.00 34.03 1.47
4637 6209 6.260870 TGTTGTCTTGTGCTAAAAACTTCA 57.739 33.333 0.00 0.00 0.00 3.02
4752 6325 1.900016 TGCAAGAGTTGGCAGCCAG 60.900 57.895 15.50 2.63 33.81 4.85
4800 6373 0.324943 ACAATGCTAAGCCGGTGACT 59.675 50.000 1.90 0.00 0.00 3.41
4813 6387 1.665679 CGGTGACTGGGATTTTCATCG 59.334 52.381 0.00 0.00 37.52 3.84
4879 6454 3.206964 TGTCGTGTTCATGGCTTGTTAA 58.793 40.909 0.00 0.00 0.00 2.01
4928 6503 3.265221 TGAGGCCTTCTTTCAGATGATGT 59.735 43.478 6.77 0.00 0.00 3.06
5018 6594 4.441087 GGTCAACGTCTTTCATTCTTTTGC 59.559 41.667 0.00 0.00 0.00 3.68
5058 6646 3.675225 CACATTATCGTCGCTATCTTGGG 59.325 47.826 0.00 0.00 0.00 4.12
5108 6697 3.769739 TGTGCACCATGAGTTAGAGTT 57.230 42.857 15.69 0.00 0.00 3.01
5176 6774 0.037590 AGGGTTGTGTGTGTGTGTGT 59.962 50.000 0.00 0.00 0.00 3.72
5178 6776 0.878416 GGTTGTGTGTGTGTGTGTGT 59.122 50.000 0.00 0.00 0.00 3.72
5180 6778 1.265635 GTTGTGTGTGTGTGTGTGTGT 59.734 47.619 0.00 0.00 0.00 3.72
5194 6794 4.022242 GTGTGTGTGTCACTACAGGTATCT 60.022 45.833 12.07 0.00 46.27 1.98
5257 7781 1.384222 GGGGCTGACGGCAAAATAGG 61.384 60.000 8.86 0.00 44.01 2.57
5280 7821 3.733443 AAAAATGACGGCAAAGAGCTT 57.267 38.095 0.00 0.00 44.79 3.74
5312 7853 5.219633 GTCTGTTTTTATTTGACATGCGGT 58.780 37.500 0.00 0.00 0.00 5.68
5316 7857 7.593273 TCTGTTTTTATTTGACATGCGGTAAAG 59.407 33.333 0.00 0.00 0.00 1.85
5375 7918 5.382303 CAAAGACAAACTTAGCCGTATGTG 58.618 41.667 0.00 0.00 37.93 3.21
5455 8000 1.376609 GAAAGCACATCCCGCGGATT 61.377 55.000 30.73 10.89 39.79 3.01
5516 8061 1.302192 ACGCACGTACTTGCCCAAT 60.302 52.632 17.70 0.00 39.53 3.16
5640 8211 1.061735 TGCACCACCTCCTATCCCATA 60.062 52.381 0.00 0.00 0.00 2.74
5641 8212 1.625818 GCACCACCTCCTATCCCATAG 59.374 57.143 0.00 0.00 0.00 2.23
5666 8237 1.296715 GTCGCCACACCTCCATCTT 59.703 57.895 0.00 0.00 0.00 2.40
5846 8418 1.684035 AGGACCTCCTTCTCGTCGA 59.316 57.895 0.00 0.00 46.09 4.20
5862 8434 0.828762 TCGACCTTTCCTGACCCGAA 60.829 55.000 0.00 0.00 0.00 4.30
5865 8437 0.250166 ACCTTTCCTGACCCGAAACG 60.250 55.000 0.00 0.00 0.00 3.60
5876 8448 3.047877 CGAAACGGCCGCCTTCTT 61.048 61.111 28.58 8.93 0.00 2.52
5965 8537 1.283321 CTTCCTCCTCCCTTCCCTTTG 59.717 57.143 0.00 0.00 0.00 2.77
5973 8545 0.777446 CCCTTCCCTTTGTTCTCCCA 59.223 55.000 0.00 0.00 0.00 4.37
6006 8580 4.331968 TCTCCAGTGTTTCTCTCTCTCTC 58.668 47.826 0.00 0.00 0.00 3.20
6042 8620 4.222588 CACTCTCTCTCCTCAAAGGACATT 59.777 45.833 0.00 0.00 40.06 2.71
6057 8635 0.402504 ACATTGCTACCACCCGGAAA 59.597 50.000 0.73 0.00 35.59 3.13
6065 8643 1.918800 CCACCCGGAAACTCCCTCT 60.919 63.158 0.73 0.00 31.13 3.69
6100 8678 2.933495 TCGTCATCCTACCGAAGTTG 57.067 50.000 0.00 0.00 0.00 3.16
6145 8723 1.531365 CAGCCTGCAAAACTCCCCA 60.531 57.895 0.00 0.00 0.00 4.96
6165 8743 3.003763 GACAAGACCCGGGGCTCT 61.004 66.667 34.46 19.35 0.00 4.09
6275 8857 2.124570 CTGGCGTCTTCCCCATGG 60.125 66.667 4.14 4.14 0.00 3.66
6313 8895 2.956132 CCCTATCTCTCTTCAGCCTCA 58.044 52.381 0.00 0.00 0.00 3.86
6384 8967 6.662755 ACCCATTTCTTTGCTGTCTATGATA 58.337 36.000 0.00 0.00 0.00 2.15
6447 9030 5.069501 AGATTCTTTTCTTTGCCATCTGC 57.930 39.130 0.00 0.00 41.77 4.26
6461 9044 3.005554 CCATCTGCTATTATTCGGCTGG 58.994 50.000 0.00 0.00 0.00 4.85
6469 9052 0.320858 TTATTCGGCTGGCGACACAA 60.321 50.000 26.34 16.22 35.60 3.33
6475 9058 2.539338 GCTGGCGACACAAACGGAA 61.539 57.895 0.00 0.00 35.60 4.30
6505 9088 2.956132 TGGCAAAGACTTTTCCATCCA 58.044 42.857 14.41 6.82 0.00 3.41
6524 9107 0.984230 ACCCGAGGAAAAGCTCATGA 59.016 50.000 0.00 0.00 0.00 3.07
6544 9127 4.699637 TGACAAAGTAGCTCTTTTCCGAA 58.300 39.130 8.01 0.00 42.95 4.30
6562 9146 4.088648 CCGAATTTGTTTATCGTCAGCAC 58.911 43.478 0.00 0.00 34.90 4.40
6569 9153 1.705256 TTATCGTCAGCACGTTGACC 58.295 50.000 13.38 0.00 46.76 4.02
6652 9239 4.327898 GCTTGGATGCATATTTGTGTTGTG 59.672 41.667 0.00 0.00 0.00 3.33
6653 9240 5.465532 TTGGATGCATATTTGTGTTGTGT 57.534 34.783 0.00 0.00 0.00 3.72
6655 9242 5.468592 TGGATGCATATTTGTGTTGTGTTC 58.531 37.500 0.00 0.00 0.00 3.18
6733 9321 2.422276 GCACTGGCGATGTTTTTCTT 57.578 45.000 0.00 0.00 0.00 2.52
6734 9322 2.742774 GCACTGGCGATGTTTTTCTTT 58.257 42.857 0.00 0.00 0.00 2.52
6736 9324 3.182372 GCACTGGCGATGTTTTTCTTTTC 59.818 43.478 0.00 0.00 0.00 2.29
6737 9325 4.610945 CACTGGCGATGTTTTTCTTTTCT 58.389 39.130 0.00 0.00 0.00 2.52
6773 9361 1.453155 ACAAAGGTCACGATCATGGC 58.547 50.000 0.00 0.00 0.00 4.40
6774 9362 1.271325 ACAAAGGTCACGATCATGGCA 60.271 47.619 0.00 0.00 0.00 4.92
6823 9411 7.603404 TCCTTGAAAAATTATGCCAAATGTCTG 59.397 33.333 0.00 0.00 0.00 3.51
6842 9432 0.102481 GGCAAGTTATCCTCGCTCGA 59.898 55.000 0.00 0.00 0.00 4.04
6882 9473 5.423886 GTCTTAGGGGACAAATCTCTTGAG 58.576 45.833 0.00 0.00 36.35 3.02
6898 9489 5.486775 TCTCTTGAGATCTCCAGTTCCAATT 59.513 40.000 20.03 0.00 0.00 2.32
6945 9536 8.490311 TGGGAAATACTTTGTTTTTCTTTCCAT 58.510 29.630 11.87 0.00 41.09 3.41
7062 11767 1.474143 GCTCCAACACTCTAGGATGCC 60.474 57.143 0.00 0.00 0.00 4.40
7286 11991 1.048601 GTCCACTGTCAAGTCCTCCA 58.951 55.000 0.00 0.00 32.98 3.86
7326 12031 5.934043 TGATTGTCCATGTCAGTGTAAGAAG 59.066 40.000 0.00 0.00 0.00 2.85
7347 12052 2.387757 CTCTTCCTTCTCTCCTCCCTG 58.612 57.143 0.00 0.00 0.00 4.45
7373 12078 5.939447 TGCATCAGACCAATATCACCATTA 58.061 37.500 0.00 0.00 0.00 1.90
7382 12087 9.308000 AGACCAATATCACCATTAAAACTCAAA 57.692 29.630 0.00 0.00 0.00 2.69
7487 12192 6.049790 TGAGAATGATCTTGCATCTTGAGAG 58.950 40.000 0.00 0.00 35.54 3.20
7493 12198 6.592870 TGATCTTGCATCTTGAGAGATCAAT 58.407 36.000 18.23 0.00 45.65 2.57
7531 12236 1.947456 CACCATCATCATGTGGCTCTG 59.053 52.381 6.26 0.00 39.13 3.35
7601 12306 2.737359 CGTAGCCAACACGATGTGGTAT 60.737 50.000 1.64 0.00 41.91 2.73
7607 12312 3.118920 CCAACACGATGTGGTATCACCTA 60.119 47.826 3.07 0.00 42.98 3.08
7624 12329 3.807622 CACCTACACGTGTTCTTTGATGT 59.192 43.478 28.55 7.75 0.00 3.06
7625 12330 3.807622 ACCTACACGTGTTCTTTGATGTG 59.192 43.478 28.55 5.87 0.00 3.21
7649 12354 2.358898 GCTTACCAAATGCACGATCCAT 59.641 45.455 0.00 0.00 0.00 3.41
7651 12356 4.319766 GCTTACCAAATGCACGATCCATAG 60.320 45.833 0.00 0.00 0.00 2.23
7694 12399 6.845758 ACATTTCAAGGTGACATGATCATT 57.154 33.333 5.16 0.00 36.85 2.57
7707 12412 3.838244 TGATCATTGCCACCTACTACC 57.162 47.619 0.00 0.00 0.00 3.18
7852 12626 2.043801 CCTACATTTTCCCTTTCCCCCA 59.956 50.000 0.00 0.00 0.00 4.96
7869 12643 1.645034 CCATTCGTCTAGGCACACTG 58.355 55.000 0.00 0.00 0.00 3.66
7893 12667 7.894708 TGATCATTGTTTCTTAAGGCAATCAA 58.105 30.769 13.82 9.12 30.17 2.57
7934 12710 2.046892 GGGCACTGCGACACTCAT 60.047 61.111 0.00 0.00 0.00 2.90
7935 12711 1.218047 GGGCACTGCGACACTCATA 59.782 57.895 0.00 0.00 0.00 2.15
7951 12765 7.482169 ACACTCATAATCAACAACTAGGAGA 57.518 36.000 0.00 0.00 30.14 3.71
7956 12770 7.861629 TCATAATCAACAACTAGGAGAATGGT 58.138 34.615 0.00 0.00 0.00 3.55
7965 12779 4.475345 ACTAGGAGAATGGTAGCAGGTAG 58.525 47.826 0.00 0.00 0.00 3.18
7989 12803 4.753610 CGAGACAATGAATGTGCTCCATAT 59.246 41.667 0.00 0.00 44.12 1.78
8065 12879 4.002906 TCAGAAGTCATAAACGTGGCTT 57.997 40.909 0.00 0.00 46.02 4.35
8066 12880 3.745975 TCAGAAGTCATAAACGTGGCTTG 59.254 43.478 0.00 0.00 43.59 4.01
8068 12882 0.796312 AGTCATAAACGTGGCTTGCG 59.204 50.000 0.00 0.00 27.30 4.85
8211 13025 1.771255 GCTGGTTCTACCCTCATCCAT 59.229 52.381 0.00 0.00 37.50 3.41
8217 13031 2.481441 TCTACCCTCATCCATGCACTT 58.519 47.619 0.00 0.00 0.00 3.16
8261 13075 9.463902 GAGGTATACTTAGATCATACTGGCTTA 57.536 37.037 2.25 0.00 0.00 3.09
8322 13139 3.340814 AATGTCTCACTAGCCCAACTG 57.659 47.619 0.00 0.00 0.00 3.16
8352 13169 0.762418 TGGTTCATGGACCACGAAGT 59.238 50.000 22.80 0.00 44.53 3.01
8467 13285 7.618117 TCACAACTATTGGATCCACTACTCTTA 59.382 37.037 15.91 0.00 34.12 2.10
8503 13321 8.289618 TGATCTCAACAAATTTTAGTTTCCTCG 58.710 33.333 0.00 0.00 0.00 4.63
8522 13340 9.798994 TTTCCTCGTCTATTATCAAGAACTTAC 57.201 33.333 0.00 0.00 0.00 2.34
8586 13404 9.713684 ATTTGAATTTGATCCCTATGGTTTCTA 57.286 29.630 0.00 0.00 0.00 2.10
8590 13408 9.971922 GAATTTGATCCCTATGGTTTCTATTTG 57.028 33.333 0.00 0.00 0.00 2.32
8835 13657 2.513753 TCTTGCCAATTTGGACGACAT 58.486 42.857 19.76 0.00 40.96 3.06
8846 13668 1.327690 GGACGACATCCCTACCTGCA 61.328 60.000 0.00 0.00 42.46 4.41
8932 13762 7.843760 TCCCATTGTATTTTCCCTTGTTATGAT 59.156 33.333 0.00 0.00 0.00 2.45
8963 13793 6.537660 TGTCATTATTCTTGATGAGTGCTCAG 59.462 38.462 7.96 0.00 43.61 3.35
8973 13803 4.713814 TGATGAGTGCTCAGAGTATTTCCT 59.286 41.667 7.96 0.00 43.61 3.36
9064 13894 4.392940 ACCAAGTCCATGTTTCTCTCAAG 58.607 43.478 0.00 0.00 0.00 3.02
9076 13906 9.748708 CATGTTTCTCTCAAGTAAATGGAAAAA 57.251 29.630 0.00 0.00 0.00 1.94
9133 13965 1.673009 TGTCAAAACCGGCGGATCC 60.673 57.895 35.78 13.80 0.00 3.36
9332 14164 3.764972 CCCTAGAAGCTAGCCTATGGTAC 59.235 52.174 12.13 0.00 0.00 3.34
9427 14259 5.300792 GTCAGTTACAAGGGAGGAGATCTAG 59.699 48.000 0.00 0.00 0.00 2.43
9473 14305 2.286523 ACGCCAAGGAGAGTCCCAG 61.287 63.158 0.00 0.00 37.19 4.45
9542 14374 2.633481 GTCCGGCCAAAGGATATAGTCT 59.367 50.000 2.24 0.00 40.30 3.24
9545 14377 2.368875 CGGCCAAAGGATATAGTCTGGT 59.631 50.000 2.24 0.00 0.00 4.00
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.878778 TGGTGGAAACAAAACATTTGGG 58.121 40.909 7.64 0.00 46.06 4.12
2 3 4.334759 TGCATGGTGGAAACAAAACATTTG 59.665 37.500 0.00 1.47 46.06 2.32
3 4 4.335037 GTGCATGGTGGAAACAAAACATTT 59.665 37.500 0.00 0.00 46.06 2.32
6 7 2.419297 GGTGCATGGTGGAAACAAAACA 60.419 45.455 0.00 0.00 46.06 2.83
7 8 2.209273 GGTGCATGGTGGAAACAAAAC 58.791 47.619 0.00 0.00 46.06 2.43
8 9 1.833630 TGGTGCATGGTGGAAACAAAA 59.166 42.857 0.00 0.00 46.06 2.44
9 10 1.137872 GTGGTGCATGGTGGAAACAAA 59.862 47.619 0.00 0.00 46.06 2.83
10 11 0.749649 GTGGTGCATGGTGGAAACAA 59.250 50.000 0.00 0.00 46.06 2.83
11 12 0.396278 TGTGGTGCATGGTGGAAACA 60.396 50.000 0.00 0.00 38.70 2.83
13 14 0.749649 GTTGTGGTGCATGGTGGAAA 59.250 50.000 0.00 0.00 0.00 3.13
14 15 0.396278 TGTTGTGGTGCATGGTGGAA 60.396 50.000 0.00 0.00 0.00 3.53
15 16 0.178967 ATGTTGTGGTGCATGGTGGA 60.179 50.000 0.00 0.00 0.00 4.02
16 17 0.680618 AATGTTGTGGTGCATGGTGG 59.319 50.000 0.00 0.00 0.00 4.61
17 18 2.557924 ACTAATGTTGTGGTGCATGGTG 59.442 45.455 0.00 0.00 0.00 4.17
18 19 2.557924 CACTAATGTTGTGGTGCATGGT 59.442 45.455 0.00 0.00 0.00 3.55
19 20 2.819019 TCACTAATGTTGTGGTGCATGG 59.181 45.455 0.00 0.00 36.21 3.66
20 21 4.082625 ACATCACTAATGTTGTGGTGCATG 60.083 41.667 6.99 0.00 46.73 4.06
21 22 4.081406 ACATCACTAATGTTGTGGTGCAT 58.919 39.130 6.99 0.00 46.73 3.96
22 23 3.252944 CACATCACTAATGTTGTGGTGCA 59.747 43.478 7.36 0.00 46.73 4.57
23 24 3.825308 CACATCACTAATGTTGTGGTGC 58.175 45.455 7.36 0.00 46.73 5.01
47 48 9.469807 AGCAAACGTGTAATCAAATTTCATAAA 57.530 25.926 0.00 0.00 0.00 1.40
63 64 7.749126 GCTTGTCTAAAAATATAGCAAACGTGT 59.251 33.333 0.00 0.00 0.00 4.49
64 65 7.748683 TGCTTGTCTAAAAATATAGCAAACGTG 59.251 33.333 0.00 0.00 34.55 4.49
65 66 7.749126 GTGCTTGTCTAAAAATATAGCAAACGT 59.251 33.333 0.00 0.00 38.69 3.99
66 67 7.748683 TGTGCTTGTCTAAAAATATAGCAAACG 59.251 33.333 0.00 0.00 38.69 3.60
67 68 8.964420 TGTGCTTGTCTAAAAATATAGCAAAC 57.036 30.769 0.00 0.00 38.69 2.93
68 69 9.571810 CATGTGCTTGTCTAAAAATATAGCAAA 57.428 29.630 0.00 0.00 38.69 3.68
69 70 8.739039 ACATGTGCTTGTCTAAAAATATAGCAA 58.261 29.630 0.00 0.00 38.69 3.91
70 71 8.183536 CACATGTGCTTGTCTAAAAATATAGCA 58.816 33.333 13.94 0.00 35.05 3.49
71 72 8.184192 ACACATGTGCTTGTCTAAAAATATAGC 58.816 33.333 25.68 0.00 0.00 2.97
74 75 8.796475 AGAACACATGTGCTTGTCTAAAAATAT 58.204 29.630 25.68 0.00 26.38 1.28
75 76 8.165239 AGAACACATGTGCTTGTCTAAAAATA 57.835 30.769 25.68 0.00 26.38 1.40
76 77 7.042797 AGAACACATGTGCTTGTCTAAAAAT 57.957 32.000 25.68 0.00 26.38 1.82
77 78 6.449635 AGAACACATGTGCTTGTCTAAAAA 57.550 33.333 25.68 0.00 26.38 1.94
78 79 6.293407 GCTAGAACACATGTGCTTGTCTAAAA 60.293 38.462 25.68 7.71 35.12 1.52
79 80 5.179368 GCTAGAACACATGTGCTTGTCTAAA 59.821 40.000 25.68 8.32 35.12 1.85
80 81 4.690748 GCTAGAACACATGTGCTTGTCTAA 59.309 41.667 25.68 10.49 35.12 2.10
81 82 4.245660 GCTAGAACACATGTGCTTGTCTA 58.754 43.478 25.68 21.91 35.12 2.59
82 83 3.070018 GCTAGAACACATGTGCTTGTCT 58.930 45.455 25.68 21.96 35.12 3.41
83 84 2.159787 CGCTAGAACACATGTGCTTGTC 60.160 50.000 25.68 16.64 35.12 3.18
84 85 1.800586 CGCTAGAACACATGTGCTTGT 59.199 47.619 25.68 17.92 35.12 3.16
85 86 1.464687 GCGCTAGAACACATGTGCTTG 60.465 52.381 25.68 16.23 35.12 4.01
86 87 0.798776 GCGCTAGAACACATGTGCTT 59.201 50.000 25.68 17.80 35.12 3.91
87 88 0.320683 TGCGCTAGAACACATGTGCT 60.321 50.000 25.68 14.31 37.72 4.40
88 89 0.095935 CTGCGCTAGAACACATGTGC 59.904 55.000 25.68 10.49 36.59 4.57
89 90 1.657594 CTCTGCGCTAGAACACATGTG 59.342 52.381 24.25 24.25 34.32 3.21
90 91 2.001812 CTCTGCGCTAGAACACATGT 57.998 50.000 9.73 0.00 34.32 3.21
91 92 0.649475 GCTCTGCGCTAGAACACATG 59.351 55.000 9.73 0.00 34.32 3.21
92 93 0.247460 TGCTCTGCGCTAGAACACAT 59.753 50.000 9.73 0.00 40.11 3.21
93 94 0.667487 GTGCTCTGCGCTAGAACACA 60.667 55.000 25.11 15.20 46.77 3.72
94 95 2.074124 GTGCTCTGCGCTAGAACAC 58.926 57.895 19.88 19.88 43.10 3.32
95 96 0.033366 TTGTGCTCTGCGCTAGAACA 59.967 50.000 17.15 17.15 40.03 3.18
96 97 1.148310 TTTGTGCTCTGCGCTAGAAC 58.852 50.000 9.73 11.72 40.03 3.01
97 98 1.733912 CATTTGTGCTCTGCGCTAGAA 59.266 47.619 9.73 0.00 40.03 2.10
98 99 1.362768 CATTTGTGCTCTGCGCTAGA 58.637 50.000 9.73 9.17 40.03 2.43
99 100 0.376152 CCATTTGTGCTCTGCGCTAG 59.624 55.000 9.73 7.53 40.03 3.42
100 101 1.026182 CCCATTTGTGCTCTGCGCTA 61.026 55.000 9.73 0.00 40.03 4.26
101 102 2.338015 CCCATTTGTGCTCTGCGCT 61.338 57.895 9.73 0.00 40.03 5.92
102 103 2.180017 CCCATTTGTGCTCTGCGC 59.820 61.111 0.00 0.00 39.75 6.09
103 104 1.870055 AAGCCCATTTGTGCTCTGCG 61.870 55.000 0.00 0.00 36.66 5.18
104 105 0.108945 GAAGCCCATTTGTGCTCTGC 60.109 55.000 0.00 0.00 36.66 4.26
105 106 0.529378 GGAAGCCCATTTGTGCTCTG 59.471 55.000 0.00 0.00 36.66 3.35
106 107 0.407139 AGGAAGCCCATTTGTGCTCT 59.593 50.000 0.00 0.00 36.66 4.09
107 108 1.067354 CAAGGAAGCCCATTTGTGCTC 60.067 52.381 0.00 0.00 36.66 4.26
108 109 0.971386 CAAGGAAGCCCATTTGTGCT 59.029 50.000 0.00 0.00 40.17 4.40
109 110 0.671472 GCAAGGAAGCCCATTTGTGC 60.671 55.000 0.00 0.00 33.88 4.57
110 111 0.388907 CGCAAGGAAGCCCATTTGTG 60.389 55.000 0.00 0.00 33.88 3.33
111 112 1.966762 CGCAAGGAAGCCCATTTGT 59.033 52.632 0.00 0.00 33.88 2.83
112 113 4.895854 CGCAAGGAAGCCCATTTG 57.104 55.556 0.00 0.00 33.88 2.32
126 127 2.594303 CACAACCTTGCTCCCGCA 60.594 61.111 0.00 0.00 46.24 5.69
127 128 4.043200 GCACAACCTTGCTCCCGC 62.043 66.667 0.00 0.00 39.59 6.13
133 134 0.249031 GGTGTGAAGCACAACCTTGC 60.249 55.000 4.30 0.00 45.29 4.01
134 135 3.944871 GGTGTGAAGCACAACCTTG 57.055 52.632 4.30 0.00 45.29 3.61
141 142 1.014564 GCTCCTACGGTGTGAAGCAC 61.015 60.000 0.00 0.00 46.97 4.40
142 143 1.292223 GCTCCTACGGTGTGAAGCA 59.708 57.895 0.00 0.00 0.00 3.91
143 144 1.014564 GTGCTCCTACGGTGTGAAGC 61.015 60.000 0.00 0.00 0.00 3.86
144 145 0.317160 TGTGCTCCTACGGTGTGAAG 59.683 55.000 0.00 0.00 0.00 3.02
145 146 0.753867 TTGTGCTCCTACGGTGTGAA 59.246 50.000 0.00 0.00 0.00 3.18
146 147 0.317160 CTTGTGCTCCTACGGTGTGA 59.683 55.000 0.00 0.00 0.00 3.58
147 148 0.033504 ACTTGTGCTCCTACGGTGTG 59.966 55.000 0.00 0.00 0.00 3.82
148 149 0.756903 AACTTGTGCTCCTACGGTGT 59.243 50.000 0.00 0.00 0.00 4.16
149 150 2.029290 ACTAACTTGTGCTCCTACGGTG 60.029 50.000 0.00 0.00 0.00 4.94
150 151 2.245582 ACTAACTTGTGCTCCTACGGT 58.754 47.619 0.00 0.00 0.00 4.83
151 152 3.314541 AACTAACTTGTGCTCCTACGG 57.685 47.619 0.00 0.00 0.00 4.02
152 153 5.924825 AGTAAAACTAACTTGTGCTCCTACG 59.075 40.000 0.00 0.00 0.00 3.51
153 154 6.147328 CCAGTAAAACTAACTTGTGCTCCTAC 59.853 42.308 0.00 0.00 0.00 3.18
154 155 6.042322 TCCAGTAAAACTAACTTGTGCTCCTA 59.958 38.462 0.00 0.00 0.00 2.94
155 156 5.063880 CCAGTAAAACTAACTTGTGCTCCT 58.936 41.667 0.00 0.00 0.00 3.69
156 157 5.061179 TCCAGTAAAACTAACTTGTGCTCC 58.939 41.667 0.00 0.00 0.00 4.70
157 158 5.989777 TCTCCAGTAAAACTAACTTGTGCTC 59.010 40.000 0.00 0.00 0.00 4.26
158 159 5.925509 TCTCCAGTAAAACTAACTTGTGCT 58.074 37.500 0.00 0.00 0.00 4.40
159 160 5.334182 GCTCTCCAGTAAAACTAACTTGTGC 60.334 44.000 0.00 0.00 0.00 4.57
160 161 5.758296 TGCTCTCCAGTAAAACTAACTTGTG 59.242 40.000 0.00 0.00 0.00 3.33
161 162 5.758784 GTGCTCTCCAGTAAAACTAACTTGT 59.241 40.000 0.00 0.00 0.00 3.16
162 163 5.758296 TGTGCTCTCCAGTAAAACTAACTTG 59.242 40.000 0.00 0.00 0.00 3.16
163 164 5.925509 TGTGCTCTCCAGTAAAACTAACTT 58.074 37.500 0.00 0.00 0.00 2.66
164 165 5.546621 TGTGCTCTCCAGTAAAACTAACT 57.453 39.130 0.00 0.00 0.00 2.24
165 166 5.758784 ACTTGTGCTCTCCAGTAAAACTAAC 59.241 40.000 0.00 0.00 0.00 2.34
166 167 5.925509 ACTTGTGCTCTCCAGTAAAACTAA 58.074 37.500 0.00 0.00 0.00 2.24
167 168 5.546621 ACTTGTGCTCTCCAGTAAAACTA 57.453 39.130 0.00 0.00 0.00 2.24
168 169 4.423625 ACTTGTGCTCTCCAGTAAAACT 57.576 40.909 0.00 0.00 0.00 2.66
169 170 5.758784 ACTAACTTGTGCTCTCCAGTAAAAC 59.241 40.000 0.00 0.00 0.00 2.43
170 171 5.925509 ACTAACTTGTGCTCTCCAGTAAAA 58.074 37.500 0.00 0.00 0.00 1.52
171 172 5.546621 ACTAACTTGTGCTCTCCAGTAAA 57.453 39.130 0.00 0.00 0.00 2.01
172 173 5.537295 TGTACTAACTTGTGCTCTCCAGTAA 59.463 40.000 0.00 0.00 0.00 2.24
173 174 5.074804 TGTACTAACTTGTGCTCTCCAGTA 58.925 41.667 0.00 0.00 0.00 2.74
174 175 3.895656 TGTACTAACTTGTGCTCTCCAGT 59.104 43.478 0.00 0.00 0.00 4.00
175 176 4.521130 TGTACTAACTTGTGCTCTCCAG 57.479 45.455 0.00 0.00 0.00 3.86
176 177 4.948341 TTGTACTAACTTGTGCTCTCCA 57.052 40.909 0.00 0.00 0.00 3.86
177 178 6.651225 AGAAATTGTACTAACTTGTGCTCTCC 59.349 38.462 0.00 0.00 0.00 3.71
178 179 7.659652 AGAAATTGTACTAACTTGTGCTCTC 57.340 36.000 0.00 0.00 0.00 3.20
179 180 9.209175 CTTAGAAATTGTACTAACTTGTGCTCT 57.791 33.333 0.00 0.00 0.00 4.09
180 181 7.958025 GCTTAGAAATTGTACTAACTTGTGCTC 59.042 37.037 0.00 0.00 0.00 4.26
181 182 7.444183 TGCTTAGAAATTGTACTAACTTGTGCT 59.556 33.333 0.00 0.00 0.00 4.40
182 183 7.534239 GTGCTTAGAAATTGTACTAACTTGTGC 59.466 37.037 0.00 0.00 0.00 4.57
183 184 8.556194 TGTGCTTAGAAATTGTACTAACTTGTG 58.444 33.333 0.00 0.00 0.00 3.33
184 185 8.671384 TGTGCTTAGAAATTGTACTAACTTGT 57.329 30.769 0.00 0.00 0.00 3.16
221 222 6.090483 TCGGTGAAAATTATGCTCCAAAAA 57.910 33.333 0.00 0.00 0.00 1.94
222 223 5.713792 TCGGTGAAAATTATGCTCCAAAA 57.286 34.783 0.00 0.00 0.00 2.44
223 224 5.713792 TTCGGTGAAAATTATGCTCCAAA 57.286 34.783 0.00 0.00 0.00 3.28
224 225 5.713792 TTTCGGTGAAAATTATGCTCCAA 57.286 34.783 0.00 0.00 0.00 3.53
225 226 5.713792 TTTTCGGTGAAAATTATGCTCCA 57.286 34.783 0.81 0.00 36.73 3.86
226 227 8.871686 ATATTTTTCGGTGAAAATTATGCTCC 57.128 30.769 14.04 0.00 40.50 4.70
228 229 9.313118 GGAATATTTTTCGGTGAAAATTATGCT 57.687 29.630 16.66 7.34 40.50 3.79
229 230 9.092876 TGGAATATTTTTCGGTGAAAATTATGC 57.907 29.630 14.91 13.63 40.50 3.14
232 233 9.810545 GGATGGAATATTTTTCGGTGAAAATTA 57.189 29.630 5.63 7.16 40.50 1.40
233 234 8.317679 TGGATGGAATATTTTTCGGTGAAAATT 58.682 29.630 5.63 5.39 40.50 1.82
234 235 7.846066 TGGATGGAATATTTTTCGGTGAAAAT 58.154 30.769 5.63 2.31 40.50 1.82
235 236 7.233389 TGGATGGAATATTTTTCGGTGAAAA 57.767 32.000 0.81 0.81 39.36 2.29
236 237 6.842437 TGGATGGAATATTTTTCGGTGAAA 57.158 33.333 0.00 0.00 0.00 2.69
237 238 6.842437 TTGGATGGAATATTTTTCGGTGAA 57.158 33.333 0.00 0.00 0.00 3.18
238 239 6.350612 GGTTTGGATGGAATATTTTTCGGTGA 60.351 38.462 0.00 0.00 0.00 4.02
239 240 5.810074 GGTTTGGATGGAATATTTTTCGGTG 59.190 40.000 0.00 0.00 0.00 4.94
240 241 5.719563 AGGTTTGGATGGAATATTTTTCGGT 59.280 36.000 0.00 0.00 0.00 4.69
241 242 6.220726 AGGTTTGGATGGAATATTTTTCGG 57.779 37.500 0.00 0.00 0.00 4.30
242 243 9.646427 TTAAAGGTTTGGATGGAATATTTTTCG 57.354 29.630 0.00 0.00 0.00 3.46
247 248 9.889128 CATGTTTAAAGGTTTGGATGGAATATT 57.111 29.630 0.00 0.00 0.00 1.28
248 249 8.485392 CCATGTTTAAAGGTTTGGATGGAATAT 58.515 33.333 0.00 0.00 0.00 1.28
249 250 7.093112 CCCATGTTTAAAGGTTTGGATGGAATA 60.093 37.037 0.00 0.00 0.00 1.75
250 251 6.296374 CCCATGTTTAAAGGTTTGGATGGAAT 60.296 38.462 0.00 0.00 0.00 3.01
251 252 5.012561 CCCATGTTTAAAGGTTTGGATGGAA 59.987 40.000 0.00 0.00 0.00 3.53
252 253 4.530161 CCCATGTTTAAAGGTTTGGATGGA 59.470 41.667 0.00 0.00 0.00 3.41
253 254 4.530161 TCCCATGTTTAAAGGTTTGGATGG 59.470 41.667 0.00 0.00 0.00 3.51
254 255 5.736951 TCCCATGTTTAAAGGTTTGGATG 57.263 39.130 7.05 0.00 0.00 3.51
255 256 5.843969 AGTTCCCATGTTTAAAGGTTTGGAT 59.156 36.000 7.05 0.00 0.00 3.41
256 257 5.212745 AGTTCCCATGTTTAAAGGTTTGGA 58.787 37.500 7.05 0.15 0.00 3.53
257 258 5.545063 AGTTCCCATGTTTAAAGGTTTGG 57.455 39.130 0.00 0.00 0.00 3.28
258 259 9.554395 AAATTAGTTCCCATGTTTAAAGGTTTG 57.446 29.630 0.00 0.00 0.00 2.93
260 261 9.554395 CAAAATTAGTTCCCATGTTTAAAGGTT 57.446 29.630 0.00 0.00 0.00 3.50
261 262 8.929487 TCAAAATTAGTTCCCATGTTTAAAGGT 58.071 29.630 0.00 0.00 0.00 3.50
262 263 9.771534 TTCAAAATTAGTTCCCATGTTTAAAGG 57.228 29.630 0.00 0.00 0.00 3.11
268 269 9.710900 GAGATTTTCAAAATTAGTTCCCATGTT 57.289 29.630 0.00 0.00 0.00 2.71
269 270 8.028938 CGAGATTTTCAAAATTAGTTCCCATGT 58.971 33.333 0.00 0.00 0.00 3.21
270 271 8.243426 TCGAGATTTTCAAAATTAGTTCCCATG 58.757 33.333 0.00 0.00 0.00 3.66
271 272 8.348285 TCGAGATTTTCAAAATTAGTTCCCAT 57.652 30.769 0.00 0.00 0.00 4.00
272 273 7.753309 TCGAGATTTTCAAAATTAGTTCCCA 57.247 32.000 0.00 0.00 0.00 4.37
273 274 7.220875 GCATCGAGATTTTCAAAATTAGTTCCC 59.779 37.037 0.00 0.00 0.00 3.97
274 275 7.044706 CGCATCGAGATTTTCAAAATTAGTTCC 60.045 37.037 0.00 0.00 0.00 3.62
275 276 7.692291 TCGCATCGAGATTTTCAAAATTAGTTC 59.308 33.333 0.00 0.00 0.00 3.01
276 277 7.526608 TCGCATCGAGATTTTCAAAATTAGTT 58.473 30.769 0.00 0.00 0.00 2.24
277 278 7.072177 TCGCATCGAGATTTTCAAAATTAGT 57.928 32.000 0.00 0.00 0.00 2.24
293 294 1.516386 GTTCCGCTTCTCGCATCGA 60.516 57.895 0.00 0.00 39.08 3.59
294 295 2.517450 GGTTCCGCTTCTCGCATCG 61.517 63.158 0.00 0.00 39.08 3.84
295 296 2.517450 CGGTTCCGCTTCTCGCATC 61.517 63.158 0.00 0.00 39.08 3.91
296 297 2.509336 CGGTTCCGCTTCTCGCAT 60.509 61.111 0.00 0.00 39.08 4.73
297 298 3.986006 ACGGTTCCGCTTCTCGCA 61.986 61.111 11.32 0.00 39.08 5.10
298 299 3.479269 CACGGTTCCGCTTCTCGC 61.479 66.667 11.32 0.00 36.73 5.03
299 300 0.942410 TTTCACGGTTCCGCTTCTCG 60.942 55.000 11.32 0.00 38.08 4.04
300 301 1.439679 ATTTCACGGTTCCGCTTCTC 58.560 50.000 11.32 0.00 0.00 2.87
301 302 1.892209 AATTTCACGGTTCCGCTTCT 58.108 45.000 11.32 0.00 0.00 2.85
302 303 2.287368 ACAAATTTCACGGTTCCGCTTC 60.287 45.455 11.32 0.00 0.00 3.86
303 304 1.679153 ACAAATTTCACGGTTCCGCTT 59.321 42.857 11.32 0.00 0.00 4.68
304 305 1.314730 ACAAATTTCACGGTTCCGCT 58.685 45.000 11.32 0.00 0.00 5.52
305 306 2.048498 GAACAAATTTCACGGTTCCGC 58.952 47.619 11.32 0.00 34.92 5.54
306 307 2.286536 ACGAACAAATTTCACGGTTCCG 60.287 45.455 9.81 9.81 37.04 4.30
307 308 3.040099 CACGAACAAATTTCACGGTTCC 58.960 45.455 11.44 0.00 37.04 3.62
308 309 3.942739 TCACGAACAAATTTCACGGTTC 58.057 40.909 8.39 8.39 37.01 3.62
309 310 4.561735 ATCACGAACAAATTTCACGGTT 57.438 36.364 11.09 3.09 0.00 4.44
310 311 4.561735 AATCACGAACAAATTTCACGGT 57.438 36.364 11.09 0.00 0.00 4.83
311 312 4.973051 TCAAATCACGAACAAATTTCACGG 59.027 37.500 11.09 0.00 0.00 4.94
312 313 6.489469 TTCAAATCACGAACAAATTTCACG 57.511 33.333 0.00 0.00 0.00 4.35
313 314 6.787043 GCATTCAAATCACGAACAAATTTCAC 59.213 34.615 0.00 0.00 0.00 3.18
314 315 6.478016 TGCATTCAAATCACGAACAAATTTCA 59.522 30.769 0.00 0.00 0.00 2.69
315 316 6.787043 GTGCATTCAAATCACGAACAAATTTC 59.213 34.615 0.00 0.00 0.00 2.17
316 317 6.257411 TGTGCATTCAAATCACGAACAAATTT 59.743 30.769 0.00 0.00 33.69 1.82
317 318 5.752472 TGTGCATTCAAATCACGAACAAATT 59.248 32.000 0.00 0.00 33.69 1.82
318 319 5.288015 TGTGCATTCAAATCACGAACAAAT 58.712 33.333 0.00 0.00 33.69 2.32
319 320 4.676546 TGTGCATTCAAATCACGAACAAA 58.323 34.783 0.00 0.00 33.69 2.83
320 321 4.298744 TGTGCATTCAAATCACGAACAA 57.701 36.364 0.00 0.00 33.69 2.83
321 322 3.978718 TGTGCATTCAAATCACGAACA 57.021 38.095 0.00 0.00 33.69 3.18
322 323 7.096885 GCTAATATGTGCATTCAAATCACGAAC 60.097 37.037 0.00 0.00 33.69 3.95
323 324 6.912051 GCTAATATGTGCATTCAAATCACGAA 59.088 34.615 0.00 0.00 33.69 3.85
324 325 6.260714 AGCTAATATGTGCATTCAAATCACGA 59.739 34.615 0.00 0.00 33.69 4.35
325 326 6.432936 AGCTAATATGTGCATTCAAATCACG 58.567 36.000 0.00 0.00 33.69 4.35
326 327 7.646314 AGAGCTAATATGTGCATTCAAATCAC 58.354 34.615 0.00 0.00 0.00 3.06
327 328 7.812690 AGAGCTAATATGTGCATTCAAATCA 57.187 32.000 0.00 0.00 0.00 2.57
328 329 9.212641 TCTAGAGCTAATATGTGCATTCAAATC 57.787 33.333 0.00 0.00 0.00 2.17
329 330 8.997323 GTCTAGAGCTAATATGTGCATTCAAAT 58.003 33.333 0.00 0.00 0.00 2.32
330 331 7.986889 TGTCTAGAGCTAATATGTGCATTCAAA 59.013 33.333 0.00 0.00 0.00 2.69
331 332 7.439356 GTGTCTAGAGCTAATATGTGCATTCAA 59.561 37.037 0.00 0.00 0.00 2.69
332 333 6.925718 GTGTCTAGAGCTAATATGTGCATTCA 59.074 38.462 0.00 0.00 0.00 2.57
333 334 7.116090 CAGTGTCTAGAGCTAATATGTGCATTC 59.884 40.741 0.00 0.00 0.00 2.67
334 335 6.927936 CAGTGTCTAGAGCTAATATGTGCATT 59.072 38.462 0.00 0.00 0.00 3.56
335 336 6.453943 CAGTGTCTAGAGCTAATATGTGCAT 58.546 40.000 0.00 0.00 0.00 3.96
336 337 5.221322 CCAGTGTCTAGAGCTAATATGTGCA 60.221 44.000 0.00 0.00 0.00 4.57
337 338 5.226396 CCAGTGTCTAGAGCTAATATGTGC 58.774 45.833 0.00 0.00 0.00 4.57
338 339 5.226396 GCCAGTGTCTAGAGCTAATATGTG 58.774 45.833 0.00 0.00 0.00 3.21
339 340 4.022762 CGCCAGTGTCTAGAGCTAATATGT 60.023 45.833 0.00 0.00 0.00 2.29
340 341 4.022762 ACGCCAGTGTCTAGAGCTAATATG 60.023 45.833 0.00 0.00 0.00 1.78
341 342 4.022762 CACGCCAGTGTCTAGAGCTAATAT 60.023 45.833 0.00 0.00 43.15 1.28
342 343 3.315470 CACGCCAGTGTCTAGAGCTAATA 59.685 47.826 0.00 0.00 43.15 0.98
343 344 2.099921 CACGCCAGTGTCTAGAGCTAAT 59.900 50.000 0.00 0.00 43.15 1.73
344 345 1.472878 CACGCCAGTGTCTAGAGCTAA 59.527 52.381 0.00 0.00 43.15 3.09
345 346 1.095600 CACGCCAGTGTCTAGAGCTA 58.904 55.000 0.00 0.00 43.15 3.32
346 347 1.886585 CACGCCAGTGTCTAGAGCT 59.113 57.895 0.00 0.00 43.15 4.09
376 377 0.385029 CTCCATCTCGAGGACAGCAG 59.615 60.000 13.56 0.00 0.00 4.24
409 410 2.158475 ACAACCTCCCAAATCTTGCTCA 60.158 45.455 0.00 0.00 0.00 4.26
414 415 3.490348 CAGTCACAACCTCCCAAATCTT 58.510 45.455 0.00 0.00 0.00 2.40
459 460 1.198094 TTGACTCATCCCCTTCGCCA 61.198 55.000 0.00 0.00 0.00 5.69
483 484 8.962679 CCTTGCCTTAACCTTTATATGTTTGTA 58.037 33.333 0.00 0.00 0.00 2.41
489 490 4.832823 CCCCCTTGCCTTAACCTTTATATG 59.167 45.833 0.00 0.00 0.00 1.78
491 492 4.120681 TCCCCCTTGCCTTAACCTTTATA 58.879 43.478 0.00 0.00 0.00 0.98
531 532 0.601841 CTCAACACGTGTACCCCCAC 60.602 60.000 23.69 0.00 0.00 4.61
532 533 1.049855 ACTCAACACGTGTACCCCCA 61.050 55.000 23.69 1.43 0.00 4.96
719 1196 9.638239 ACCATTAACAGTTGCTTAATTAATGTG 57.362 29.630 11.85 7.57 39.76 3.21
903 1487 6.183361 ACAACTCAGATATATAAAGCCAGCCA 60.183 38.462 0.00 0.00 0.00 4.75
1032 1649 1.527433 GGGGCAAAGTGTCCTTGCTC 61.527 60.000 7.41 3.32 43.05 4.26
1037 1654 1.142688 ATCCTGGGGCAAAGTGTCCT 61.143 55.000 0.00 0.00 43.05 3.85
1154 1771 0.394192 CAGATCTAAGATGGCCGCCA 59.606 55.000 16.17 16.17 38.19 5.69
1231 1854 3.058983 CACTGCATGACACAAACACGTAT 60.059 43.478 0.00 0.00 0.00 3.06
1429 2059 4.502335 GCATATGCGTGCGACATG 57.498 55.556 12.82 0.00 35.10 3.21
1491 2155 0.660300 CGGCGGAGAAAACTGCAAAC 60.660 55.000 0.00 0.00 43.15 2.93
1493 2157 1.227704 TCGGCGGAGAAAACTGCAA 60.228 52.632 7.21 0.00 43.15 4.08
1615 2279 3.135530 ACTTCTAATCCCCTCTGCATGTC 59.864 47.826 0.00 0.00 0.00 3.06
1616 2280 3.118112 CACTTCTAATCCCCTCTGCATGT 60.118 47.826 0.00 0.00 0.00 3.21
1617 2281 3.474600 CACTTCTAATCCCCTCTGCATG 58.525 50.000 0.00 0.00 0.00 4.06
1751 2419 8.754230 AACTAATTAACAGAGTAGAAACGGAC 57.246 34.615 0.00 0.00 0.00 4.79
1831 2499 4.706476 TCGCAAACCTACCTAGCTAGTAAA 59.294 41.667 19.31 3.65 0.00 2.01
1832 2500 4.272489 TCGCAAACCTACCTAGCTAGTAA 58.728 43.478 19.31 6.10 0.00 2.24
1835 2569 2.688958 ACTCGCAAACCTACCTAGCTAG 59.311 50.000 14.20 14.20 0.00 3.42
1839 2573 1.641577 GCACTCGCAAACCTACCTAG 58.358 55.000 0.00 0.00 38.36 3.02
1870 2605 4.170062 CCGACGCCTCGCTCGTTA 62.170 66.667 0.00 0.00 40.59 3.18
2097 2840 7.264221 TCAGCACTGCTCTTTTATTTTTGAAA 58.736 30.769 0.00 0.00 36.40 2.69
2188 3177 0.179032 TCCAGCTCAGCGGAAAAACA 60.179 50.000 7.66 0.00 31.04 2.83
2195 3184 2.758089 GCACATTCCAGCTCAGCGG 61.758 63.158 1.45 1.45 0.00 5.52
2265 3254 0.771755 GGGTGAGAGAGGTTTTGGGT 59.228 55.000 0.00 0.00 0.00 4.51
2316 3305 3.639561 TCCCGTGCATAGTAGAATTGCTA 59.360 43.478 0.00 0.00 37.28 3.49
2412 3403 6.315144 ACCCAATGTAAAGCTTTGAAACAAAC 59.685 34.615 22.02 10.23 35.10 2.93
2515 3507 5.342525 CGCACCTTCATTATACTACATCGAC 59.657 44.000 0.00 0.00 0.00 4.20
2551 3544 3.052082 AAGCGCGCAATCAGCTGT 61.052 55.556 35.10 5.73 41.53 4.40
2600 3614 0.698238 TTCACATAAGGCCCACTGCT 59.302 50.000 0.00 0.00 40.92 4.24
2654 3672 1.301913 TAGGAGGGGTGAGTAGGGGG 61.302 65.000 0.00 0.00 0.00 5.40
2677 3708 2.029020 GGTGATGATGGAGTATAGCGCA 60.029 50.000 11.47 0.00 0.00 6.09
2957 3989 5.767277 AAATTAGTCCTACTCCCCGAAAA 57.233 39.130 0.00 0.00 0.00 2.29
3017 4049 5.074115 AGAAAATTTGTTCATGGGGTCGTA 58.926 37.500 0.00 0.00 0.00 3.43
3027 4059 9.581099 GAGGACAAAAACTAGAAAATTTGTTCA 57.419 29.630 18.63 0.00 43.77 3.18
3034 4066 8.138074 GCTTGAAGAGGACAAAAACTAGAAAAT 58.862 33.333 0.00 0.00 0.00 1.82
3222 4255 2.040278 TCACTAGGTGCAAATGAGCCTT 59.960 45.455 0.00 0.00 32.98 4.35
3373 4416 3.741344 GCTTGTGTACTGTTCGAATCTGT 59.259 43.478 0.00 8.11 0.00 3.41
3388 4431 6.019779 TGTGAAAAAGTTTACTGCTTGTGT 57.980 33.333 0.00 0.00 0.00 3.72
3482 4525 1.550524 AGAAAGATGCCTGAGTGCGTA 59.449 47.619 0.00 0.00 0.00 4.42
3563 4609 1.856259 TCCTAGACTCAGATGAGCCCT 59.144 52.381 9.75 9.54 45.79 5.19
3580 4626 0.846693 AGTGAGGTGTTTTGGCTCCT 59.153 50.000 0.00 0.00 35.32 3.69
3655 4703 2.240667 ACAAGGGGAATCTCCAGATGTG 59.759 50.000 0.32 0.00 38.64 3.21
3663 4711 7.015682 TCTGAGTATGAATACAAGGGGAATCTC 59.984 40.741 3.43 0.00 35.74 2.75
3669 4717 6.485830 TTCTCTGAGTATGAATACAAGGGG 57.514 41.667 4.32 0.00 35.74 4.79
3670 4718 8.970859 ATTTTCTCTGAGTATGAATACAAGGG 57.029 34.615 4.32 1.09 35.74 3.95
3736 4807 2.373169 AGTGGATTTCTCAGCAGTTCCA 59.627 45.455 0.00 0.00 0.00 3.53
3815 4886 8.394971 ACAGACAAATAAATCATGACAACTCA 57.605 30.769 0.00 0.00 0.00 3.41
3882 4953 0.972883 AGAGCAGCTCGGAAGTTTCT 59.027 50.000 16.99 0.00 35.36 2.52
3960 5032 7.074653 TGACTCAGAAAGTACCCTGTAAAAT 57.925 36.000 7.21 0.00 38.74 1.82
3968 5040 5.422650 AGGTAGAATGACTCAGAAAGTACCC 59.577 44.000 0.00 0.00 38.74 3.69
3989 5061 4.522789 AGATAACACATTTTCGGCAAAGGT 59.477 37.500 0.00 0.00 40.03 3.50
4219 5744 1.714541 TGGTTGCAACAATGGATGGT 58.285 45.000 29.55 0.00 0.00 3.55
4228 5753 2.102252 GTGGAAAGGAATGGTTGCAACA 59.898 45.455 29.55 16.61 0.00 3.33
4419 5980 2.616510 GGGGGTCACTCTCACAAGAATG 60.617 54.545 0.00 0.00 29.89 2.67
4440 6001 9.701098 TCAATCAAAAATTCCTCAAGAATCAAG 57.299 29.630 0.00 0.00 44.75 3.02
4513 6075 0.607489 ATGTGCTCACCAGCCAAGAC 60.607 55.000 0.00 0.00 46.26 3.01
4537 6099 3.256704 TCTCAAGTGACCCCTAACCATT 58.743 45.455 0.00 0.00 0.00 3.16
4576 6148 7.928706 AGCATAAGTACTTAACAAGCATCTAGG 59.071 37.037 18.88 0.00 0.00 3.02
4677 6250 5.026093 AGGTCTAAGGACTAGAAAAGGGT 57.974 43.478 0.00 0.00 38.41 4.34
4678 6251 7.492077 TTAAGGTCTAAGGACTAGAAAAGGG 57.508 40.000 0.00 0.00 38.41 3.95
4681 6254 8.674925 TGGATTAAGGTCTAAGGACTAGAAAA 57.325 34.615 0.00 0.00 38.41 2.29
4752 6325 2.351111 GAGCTCACTCTAGCATTTGTGC 59.649 50.000 9.40 0.00 45.30 4.57
4800 6373 2.170397 TGCTAGAGCGATGAAAATCCCA 59.830 45.455 0.00 0.00 45.83 4.37
4813 6387 1.134965 ACATCTTCCGTGTGCTAGAGC 60.135 52.381 0.00 0.00 42.50 4.09
4879 6454 5.070446 TGTCTTATTCATAGGGCGATGACTT 59.930 40.000 0.58 0.00 35.56 3.01
4887 6462 5.486526 CCTCAGATGTCTTATTCATAGGGC 58.513 45.833 0.00 0.00 0.00 5.19
4928 6503 3.711704 CCCCTGATCTTAGAAGTAGGCAA 59.288 47.826 0.00 0.00 0.00 4.52
4965 6541 5.310409 TGAGGGTCTTCAGTCAAAAAGAT 57.690 39.130 0.00 0.00 34.26 2.40
5002 6578 4.617223 GCCTTACGCAAAAGAATGAAAGAC 59.383 41.667 0.00 0.00 37.47 3.01
5018 6594 0.738975 TGATCGTCCTCTGCCTTACG 59.261 55.000 0.00 0.00 36.71 3.18
5058 6646 0.729690 GAAGAGAAATGAGGTGCGCC 59.270 55.000 8.71 8.71 0.00 6.53
5176 6774 4.042271 TCCAGATACCTGTAGTGACACA 57.958 45.455 8.59 0.00 38.74 3.72
5178 6776 6.620877 AATTTCCAGATACCTGTAGTGACA 57.379 37.500 0.00 0.00 38.74 3.58
5180 6778 5.880332 GCAAATTTCCAGATACCTGTAGTGA 59.120 40.000 0.00 0.00 38.74 3.41
5194 6794 0.958091 CCACAGACGGCAAATTTCCA 59.042 50.000 0.00 0.00 0.00 3.53
5264 7788 2.770164 AGTAAGCTCTTTGCCGTCAT 57.230 45.000 0.00 0.00 44.23 3.06
5312 7853 8.882415 AAAACATACGACAAAGTCTCTCTTTA 57.118 30.769 0.00 0.00 43.57 1.85
5375 7918 5.470098 TGTCTTTCCTGTCAGTCAAATAAGC 59.530 40.000 0.00 0.00 0.00 3.09
5429 7974 2.029918 GCGGGATGTGCTTTCTCTTTTT 60.030 45.455 0.00 0.00 0.00 1.94
5430 7975 1.541588 GCGGGATGTGCTTTCTCTTTT 59.458 47.619 0.00 0.00 0.00 2.27
5455 8000 4.512571 CCACGTCATAAATCTGCATGATCA 59.487 41.667 0.00 0.00 33.92 2.92
5516 8061 4.992740 GGTGCATGTGGGGTGGCA 62.993 66.667 0.00 0.00 0.00 4.92
5699 8270 2.257371 GTGGTGTAGCGACGCAGA 59.743 61.111 23.70 6.47 37.85 4.26
5846 8418 0.250166 CGTTTCGGGTCAGGAAAGGT 60.250 55.000 0.00 0.00 35.60 3.50
5862 8434 2.047179 GAGAAGAAGGCGGCCGTT 60.047 61.111 28.70 14.70 0.00 4.44
5965 8537 1.480545 GAGAGGAAGAGCTGGGAGAAC 59.519 57.143 0.00 0.00 0.00 3.01
5973 8545 1.077005 ACACTGGAGAGAGGAAGAGCT 59.923 52.381 0.00 0.00 0.00 4.09
6042 8620 1.675219 GAGTTTCCGGGTGGTAGCA 59.325 57.895 0.00 0.00 36.30 3.49
6057 8635 2.313342 AGTCACAGGTGATAGAGGGAGT 59.687 50.000 5.29 0.00 42.18 3.85
6100 8678 2.124570 ACGGATCCATGTGCAGGC 60.125 61.111 13.41 0.00 0.00 4.85
6145 8723 4.324991 GCCCCGGGTCTTGTCGTT 62.325 66.667 21.85 0.00 0.00 3.85
6275 8857 1.366366 GCCATTGCATCATGCTCCC 59.634 57.895 11.84 0.00 45.31 4.30
6313 8895 1.882989 GCTGCTCGTCCTCCTCTGTT 61.883 60.000 0.00 0.00 0.00 3.16
6350 8933 9.474313 ACAGCAAAGAAATGGGTAAATATTAGA 57.526 29.630 0.00 0.00 0.00 2.10
6374 8957 6.931281 GCTGTTAGCCTCAAATATCATAGACA 59.069 38.462 0.00 0.00 34.48 3.41
6384 8967 4.159135 CCATCTTTGCTGTTAGCCTCAAAT 59.841 41.667 0.00 0.00 41.51 2.32
6461 9044 1.404477 CCAAATTCCGTTTGTGTCGC 58.596 50.000 0.55 0.00 44.58 5.19
6469 9052 0.036483 GCCATTGGCCAAATTCCGTT 60.036 50.000 24.71 0.00 44.06 4.44
6482 9065 4.248058 GGATGGAAAAGTCTTTGCCATTG 58.752 43.478 30.83 0.00 34.91 2.82
6483 9066 3.903090 TGGATGGAAAAGTCTTTGCCATT 59.097 39.130 30.83 18.68 34.91 3.16
6505 9088 0.984230 TCATGAGCTTTTCCTCGGGT 59.016 50.000 0.00 0.00 34.56 5.28
6524 9107 6.039382 ACAAATTCGGAAAAGAGCTACTTTGT 59.961 34.615 10.60 7.22 46.55 2.83
6569 9153 4.536065 TGTCTGCTTAAACATTCTTTGCG 58.464 39.130 0.00 0.00 0.00 4.85
6600 9187 6.483974 TGAAAACACACACTACCGTAATCAAT 59.516 34.615 0.00 0.00 0.00 2.57
6652 9239 3.643159 AAGAGAAATGGGTTTGCGAAC 57.357 42.857 8.43 8.43 34.96 3.95
6653 9240 3.756434 CCTAAGAGAAATGGGTTTGCGAA 59.244 43.478 0.00 0.00 0.00 4.70
6655 9242 3.081804 ACCTAAGAGAAATGGGTTTGCG 58.918 45.455 0.00 0.00 0.00 4.85
6760 9348 1.331756 GTTCCATGCCATGATCGTGAC 59.668 52.381 16.77 5.28 0.00 3.67
6773 9361 5.128171 AGAACCCAATGATGAATGTTCCATG 59.872 40.000 0.00 0.00 33.55 3.66
6774 9362 5.274822 AGAACCCAATGATGAATGTTCCAT 58.725 37.500 0.00 0.00 33.55 3.41
6831 9421 2.519780 GGGGTCTCGAGCGAGGAT 60.520 66.667 18.57 0.00 42.20 3.24
6842 9432 0.106116 GACGTATGAGGGAGGGGTCT 60.106 60.000 0.00 0.00 0.00 3.85
6882 9473 5.940470 AGTGTGTTAATTGGAACTGGAGATC 59.060 40.000 0.00 0.00 0.00 2.75
6898 9489 6.070481 TCCCAACATCTAGCATAAGTGTGTTA 60.070 38.462 0.00 0.00 30.75 2.41
6945 9536 2.342406 TCCCACCTCTCATCCTTTGA 57.658 50.000 0.00 0.00 0.00 2.69
7134 11839 7.396339 ACGCTTCTGGGTCATGTATATATAGAA 59.604 37.037 0.00 0.00 33.98 2.10
7286 11991 4.338879 ACAATCAGAAGGTTGCTGCTATT 58.661 39.130 0.00 0.00 33.45 1.73
7326 12031 1.119684 GGGAGGAGAGAAGGAAGAGC 58.880 60.000 0.00 0.00 0.00 4.09
7347 12052 3.057736 GGTGATATTGGTCTGATGCATGC 60.058 47.826 11.82 11.82 0.00 4.06
7373 12078 3.922171 TTGGTGGCCAATTTGAGTTTT 57.078 38.095 7.24 0.00 38.75 2.43
7382 12087 2.367241 GGTGTAGTTTTTGGTGGCCAAT 59.633 45.455 7.24 0.00 43.55 3.16
7467 12172 6.592870 TGATCTCTCAAGATGCAAGATCATT 58.407 36.000 17.11 0.00 44.41 2.57
7487 12192 4.643784 AGATCTTCCTTGTGCCAATTGATC 59.356 41.667 7.12 0.00 0.00 2.92
7493 12198 2.553028 GGTGAGATCTTCCTTGTGCCAA 60.553 50.000 0.00 0.00 0.00 4.52
7601 12306 3.804786 TCAAAGAACACGTGTAGGTGA 57.195 42.857 23.69 18.89 40.38 4.02
7607 12312 3.242739 GCTTCACATCAAAGAACACGTGT 60.243 43.478 17.22 17.22 0.00 4.49
7624 12329 2.499197 TCGTGCATTTGGTAAGCTTCA 58.501 42.857 0.00 0.00 0.00 3.02
7625 12330 3.487544 GGATCGTGCATTTGGTAAGCTTC 60.488 47.826 0.00 0.00 0.00 3.86
7649 12354 2.307392 TGCCTAGAAATTGGTGCCACTA 59.693 45.455 0.00 0.00 0.00 2.74
7651 12356 1.544724 TGCCTAGAAATTGGTGCCAC 58.455 50.000 0.00 0.00 0.00 5.01
7721 12492 3.063084 GCGAGGGAGTGGACGAGT 61.063 66.667 0.00 0.00 0.00 4.18
7852 12626 2.760650 TGATCAGTGTGCCTAGACGAAT 59.239 45.455 0.00 0.00 0.00 3.34
7869 12643 8.761575 TTTGATTGCCTTAAGAAACAATGATC 57.238 30.769 17.58 9.12 33.07 2.92
7893 12667 1.330213 GCGTGCTTGTGCCAAAAATTT 59.670 42.857 0.00 0.00 38.71 1.82
7934 12710 7.093068 TGCTACCATTCTCCTAGTTGTTGATTA 60.093 37.037 0.00 0.00 0.00 1.75
7935 12711 6.116126 GCTACCATTCTCCTAGTTGTTGATT 58.884 40.000 0.00 0.00 0.00 2.57
7951 12765 1.409427 GTCTCGCTACCTGCTACCATT 59.591 52.381 0.00 0.00 40.11 3.16
7956 12770 2.375146 TCATTGTCTCGCTACCTGCTA 58.625 47.619 0.00 0.00 40.11 3.49
7965 12779 1.063174 GGAGCACATTCATTGTCTCGC 59.937 52.381 0.00 0.00 36.00 5.03
7989 12803 5.007034 ACAACCGTGATTCAAATGGTCATA 58.993 37.500 6.88 0.00 31.17 2.15
8068 12882 2.580276 CATGGCCCATGTGGTTGC 59.420 61.111 15.89 0.00 37.12 4.17
8086 12900 5.338871 GGAAACTAGGGATGTCCATGTTGTA 60.339 44.000 0.86 0.00 38.24 2.41
8170 12984 1.377202 GAACGGGCAGCATCCAAGA 60.377 57.895 0.00 0.00 0.00 3.02
8211 13025 0.991146 TAGGCTTGGGATGAAGTGCA 59.009 50.000 0.00 0.00 0.00 4.57
8217 13031 0.681887 TCGACGTAGGCTTGGGATGA 60.682 55.000 0.00 0.00 0.00 2.92
8322 13139 1.003545 CCATGAACCAATCGTCGATGC 60.004 52.381 8.83 0.00 0.00 3.91
8352 13169 2.690497 GTCTCATCAATGTCCGAGGAGA 59.310 50.000 0.75 0.75 45.28 3.71
8429 13246 1.971149 AGTTGTGATGGGGATCCTCA 58.029 50.000 18.95 18.95 0.00 3.86
8434 13252 4.202609 GGATCCAATAGTTGTGATGGGGAT 60.203 45.833 6.95 0.00 36.65 3.85
8554 13372 9.669887 CCATAGGGATCAAATTCAAATGAAAAA 57.330 29.630 0.00 0.00 35.13 1.94
8586 13404 5.324409 TCATTGTTGCTAGGTCCTTCAAAT 58.676 37.500 0.00 0.00 0.00 2.32
8590 13408 4.207891 TCTCATTGTTGCTAGGTCCTTC 57.792 45.455 0.00 0.00 0.00 3.46
8641 13459 3.189495 TCATCGAGCGGAAGTCATAGATC 59.811 47.826 0.00 0.00 0.00 2.75
8835 13657 5.221925 GGAAGAATCAATATGCAGGTAGGGA 60.222 44.000 0.00 0.00 0.00 4.20
8902 13730 7.142995 ACAAGGGAAAATACAATGGGAAAAA 57.857 32.000 0.00 0.00 0.00 1.94
8958 13788 6.321690 TGGACTAGTTAGGAAATACTCTGAGC 59.678 42.308 4.19 0.00 0.00 4.26
8963 13793 9.747293 GTGTAATGGACTAGTTAGGAAATACTC 57.253 37.037 0.00 0.00 0.00 2.59
8992 13822 5.138276 AGGGTAATATCAGCGACAGACTTA 58.862 41.667 0.00 0.00 0.00 2.24
9076 13906 7.595819 TGATGAATTTTCACCACCTTTAGTT 57.404 32.000 0.00 0.00 40.49 2.24
9078 13908 7.093814 TGGATGATGAATTTTCACCACCTTTAG 60.094 37.037 0.00 0.00 40.49 1.85
9101 13933 0.537653 TTGACACCGACACTTGTGGA 59.462 50.000 5.72 0.00 36.80 4.02
9178 14010 2.610859 ATTGTGTCCCCCGCCTCT 60.611 61.111 0.00 0.00 0.00 3.69
9427 14259 3.365364 GCAAGCTTGGCAATACGGATATC 60.365 47.826 27.10 2.03 0.00 1.63
9542 14374 2.926242 GGGGTCCTCGGACAACCA 60.926 66.667 17.21 0.00 46.20 3.67
9545 14377 0.043637 ATTAGGGGGTCCTCGGACAA 59.956 55.000 17.21 3.69 46.20 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.