Multiple sequence alignment - TraesCS6D01G029500

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G029500 chr6D 100.000 2357 0 0 1 2357 11485516 11483160 0.000000e+00 4353
1 TraesCS6D01G029500 chr6D 87.709 358 42 2 1 357 11344456 11344812 1.300000e-112 416
2 TraesCS6D01G029500 chr6D 85.870 276 34 4 1514 1786 48826388 48826115 2.960000e-74 289
3 TraesCS6D01G029500 chr6B 89.385 1187 71 27 358 1515 324536180 324535020 0.000000e+00 1443
4 TraesCS6D01G029500 chr6B 88.832 1182 82 23 357 1512 324292657 324291500 0.000000e+00 1406
5 TraesCS6D01G029500 chr6B 89.352 1080 66 24 459 1515 324837214 324836161 0.000000e+00 1312
6 TraesCS6D01G029500 chr6A 96.424 839 30 0 1519 2357 420604146 420603308 0.000000e+00 1384
7 TraesCS6D01G029500 chr6A 91.477 704 49 7 825 1520 105070409 105071109 0.000000e+00 957
8 TraesCS6D01G029500 chr6A 90.423 355 32 2 1 354 12612697 12613050 1.280000e-127 466
9 TraesCS6D01G029500 chr6A 89.106 358 35 4 1 356 12869166 12868811 2.150000e-120 442
10 TraesCS6D01G029500 chr6A 87.086 302 38 1 1 302 12877099 12876799 8.070000e-90 340
11 TraesCS6D01G029500 chr4B 88.215 1171 69 34 357 1515 42051710 42052823 0.000000e+00 1334
12 TraesCS6D01G029500 chr2B 87.270 1194 72 45 352 1515 21741670 21742813 0.000000e+00 1290
13 TraesCS6D01G029500 chr2B 89.420 586 45 6 1774 2357 703999374 703999944 0.000000e+00 723
14 TraesCS6D01G029500 chr2B 91.258 469 41 0 1889 2357 456257889 456258357 7.100000e-180 640
15 TraesCS6D01G029500 chr5B 86.489 1199 90 40 357 1514 92126134 92127301 0.000000e+00 1251
16 TraesCS6D01G029500 chr5B 80.716 363 30 18 354 707 539097088 539097419 1.810000e-61 246
17 TraesCS6D01G029500 chr3B 86.418 1097 80 45 357 1414 339753765 339754831 0.000000e+00 1136
18 TraesCS6D01G029500 chr3B 87.004 277 30 4 1514 1786 554357837 554357563 8.180000e-80 307
19 TraesCS6D01G029500 chr7B 92.967 782 44 6 734 1515 378714865 378715635 0.000000e+00 1129
20 TraesCS6D01G029500 chr7B 79.330 358 17 26 357 707 378704340 378704647 5.140000e-47 198
21 TraesCS6D01G029500 chr4A 94.949 693 30 4 1516 2203 173655439 173654747 0.000000e+00 1081
22 TraesCS6D01G029500 chr4A 94.194 689 31 4 1516 2201 173695088 173694406 0.000000e+00 1042
23 TraesCS6D01G029500 chrUn 89.231 585 48 5 1774 2357 318786743 318786173 0.000000e+00 717
24 TraesCS6D01G029500 chrUn 88.547 585 52 5 1774 2357 273288819 273289389 0.000000e+00 695
25 TraesCS6D01G029500 chr7A 88.946 588 54 5 1774 2357 280739345 280738765 0.000000e+00 715
26 TraesCS6D01G029500 chr7A 87.132 272 31 3 1519 1787 490649283 490649013 2.940000e-79 305
27 TraesCS6D01G029500 chr1D 89.947 378 26 6 1990 2357 299211444 299211069 5.890000e-131 477
28 TraesCS6D01G029500 chr2A 84.527 349 44 7 357 697 350518959 350519305 1.040000e-88 337
29 TraesCS6D01G029500 chr2A 88.636 132 14 1 1384 1515 688402597 688402467 2.420000e-35 159
30 TraesCS6D01G029500 chr2D 87.319 276 30 4 1514 1786 533080915 533080642 6.330000e-81 311
31 TraesCS6D01G029500 chr1A 87.037 270 28 6 1521 1786 50821099 50820833 4.920000e-77 298
32 TraesCS6D01G029500 chr4D 87.308 260 29 3 1530 1786 63111554 63111296 6.370000e-76 294


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G029500 chr6D 11483160 11485516 2356 True 4353 4353 100.000 1 2357 1 chr6D.!!$R1 2356
1 TraesCS6D01G029500 chr6B 324535020 324536180 1160 True 1443 1443 89.385 358 1515 1 chr6B.!!$R2 1157
2 TraesCS6D01G029500 chr6B 324291500 324292657 1157 True 1406 1406 88.832 357 1512 1 chr6B.!!$R1 1155
3 TraesCS6D01G029500 chr6B 324836161 324837214 1053 True 1312 1312 89.352 459 1515 1 chr6B.!!$R3 1056
4 TraesCS6D01G029500 chr6A 420603308 420604146 838 True 1384 1384 96.424 1519 2357 1 chr6A.!!$R3 838
5 TraesCS6D01G029500 chr6A 105070409 105071109 700 False 957 957 91.477 825 1520 1 chr6A.!!$F2 695
6 TraesCS6D01G029500 chr4B 42051710 42052823 1113 False 1334 1334 88.215 357 1515 1 chr4B.!!$F1 1158
7 TraesCS6D01G029500 chr2B 21741670 21742813 1143 False 1290 1290 87.270 352 1515 1 chr2B.!!$F1 1163
8 TraesCS6D01G029500 chr2B 703999374 703999944 570 False 723 723 89.420 1774 2357 1 chr2B.!!$F3 583
9 TraesCS6D01G029500 chr5B 92126134 92127301 1167 False 1251 1251 86.489 357 1514 1 chr5B.!!$F1 1157
10 TraesCS6D01G029500 chr3B 339753765 339754831 1066 False 1136 1136 86.418 357 1414 1 chr3B.!!$F1 1057
11 TraesCS6D01G029500 chr7B 378714865 378715635 770 False 1129 1129 92.967 734 1515 1 chr7B.!!$F2 781
12 TraesCS6D01G029500 chr4A 173654747 173655439 692 True 1081 1081 94.949 1516 2203 1 chr4A.!!$R1 687
13 TraesCS6D01G029500 chr4A 173694406 173695088 682 True 1042 1042 94.194 1516 2201 1 chr4A.!!$R2 685
14 TraesCS6D01G029500 chrUn 318786173 318786743 570 True 717 717 89.231 1774 2357 1 chrUn.!!$R1 583
15 TraesCS6D01G029500 chrUn 273288819 273289389 570 False 695 695 88.547 1774 2357 1 chrUn.!!$F1 583
16 TraesCS6D01G029500 chr7A 280738765 280739345 580 True 715 715 88.946 1774 2357 1 chr7A.!!$R1 583

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
113 114 0.036952 CACCAGCTTCCATCGTGAGT 60.037 55.0 0.00 0.00 0.00 3.41 F
147 148 0.037326 CACGTTCTTGCTGGGCTAGA 60.037 55.0 0.43 0.11 38.48 2.43 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1208 1357 1.593196 ATCATAAACCGGTGGCGATG 58.407 50.0 8.52 9.87 0.00 3.84 R
2042 2217 2.872858 GGACTCTTGGTTGTGAGTTGTC 59.127 50.0 0.00 0.00 42.79 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.883779 CCATGATGTCAAACGCGAG 57.116 52.632 15.93 1.66 0.00 5.03
19 20 0.247814 CCATGATGTCAAACGCGAGC 60.248 55.000 15.93 0.00 0.00 5.03
20 21 0.247814 CATGATGTCAAACGCGAGCC 60.248 55.000 15.93 0.00 0.00 4.70
21 22 0.391661 ATGATGTCAAACGCGAGCCT 60.392 50.000 15.93 0.00 0.00 4.58
22 23 1.014044 TGATGTCAAACGCGAGCCTC 61.014 55.000 15.93 0.27 0.00 4.70
23 24 2.014093 GATGTCAAACGCGAGCCTCG 62.014 60.000 15.93 10.36 43.89 4.63
33 34 3.620785 GAGCCTCGCCGGGATGAT 61.621 66.667 2.18 0.00 0.00 2.45
34 35 3.581687 GAGCCTCGCCGGGATGATC 62.582 68.421 2.18 0.51 0.00 2.92
35 36 3.620785 GCCTCGCCGGGATGATCT 61.621 66.667 2.18 0.00 0.00 2.75
36 37 3.142393 CCTCGCCGGGATGATCTT 58.858 61.111 2.18 0.00 0.00 2.40
37 38 1.005630 CCTCGCCGGGATGATCTTC 60.006 63.158 2.18 0.00 0.00 2.87
38 39 1.467678 CCTCGCCGGGATGATCTTCT 61.468 60.000 2.18 0.00 0.00 2.85
39 40 0.038709 CTCGCCGGGATGATCTTCTC 60.039 60.000 2.18 3.60 0.00 2.87
40 41 1.372251 CGCCGGGATGATCTTCTCG 60.372 63.158 20.86 20.86 39.34 4.04
41 42 1.666234 GCCGGGATGATCTTCTCGC 60.666 63.158 22.05 14.82 38.29 5.03
42 43 1.005630 CCGGGATGATCTTCTCGCC 60.006 63.158 22.05 8.41 38.29 5.54
43 44 1.372251 CGGGATGATCTTCTCGCCG 60.372 63.158 16.84 12.67 32.02 6.46
44 45 1.742768 GGGATGATCTTCTCGCCGT 59.257 57.895 8.38 0.00 0.00 5.68
45 46 0.959553 GGGATGATCTTCTCGCCGTA 59.040 55.000 8.38 0.00 0.00 4.02
46 47 1.068194 GGGATGATCTTCTCGCCGTAG 60.068 57.143 8.38 0.00 0.00 3.51
47 48 1.609555 GGATGATCTTCTCGCCGTAGT 59.390 52.381 8.38 0.00 0.00 2.73
48 49 2.034812 GGATGATCTTCTCGCCGTAGTT 59.965 50.000 8.38 0.00 0.00 2.24
49 50 2.846039 TGATCTTCTCGCCGTAGTTC 57.154 50.000 0.00 0.00 0.00 3.01
50 51 2.366533 TGATCTTCTCGCCGTAGTTCT 58.633 47.619 0.00 0.00 0.00 3.01
51 52 2.355132 TGATCTTCTCGCCGTAGTTCTC 59.645 50.000 0.00 0.00 0.00 2.87
52 53 1.093159 TCTTCTCGCCGTAGTTCTCC 58.907 55.000 0.00 0.00 0.00 3.71
53 54 0.100861 CTTCTCGCCGTAGTTCTCCC 59.899 60.000 0.00 0.00 0.00 4.30
54 55 0.323178 TTCTCGCCGTAGTTCTCCCT 60.323 55.000 0.00 0.00 0.00 4.20
55 56 0.747283 TCTCGCCGTAGTTCTCCCTC 60.747 60.000 0.00 0.00 0.00 4.30
56 57 2.049475 CTCGCCGTAGTTCTCCCTCG 62.049 65.000 0.00 0.00 0.00 4.63
57 58 2.104530 GCCGTAGTTCTCCCTCGC 59.895 66.667 0.00 0.00 0.00 5.03
58 59 2.806237 CCGTAGTTCTCCCTCGCC 59.194 66.667 0.00 0.00 0.00 5.54
59 60 2.050350 CCGTAGTTCTCCCTCGCCA 61.050 63.158 0.00 0.00 0.00 5.69
60 61 1.139095 CGTAGTTCTCCCTCGCCAC 59.861 63.158 0.00 0.00 0.00 5.01
61 62 1.516423 GTAGTTCTCCCTCGCCACC 59.484 63.158 0.00 0.00 0.00 4.61
62 63 2.050350 TAGTTCTCCCTCGCCACCG 61.050 63.158 0.00 0.00 0.00 4.94
63 64 2.776370 TAGTTCTCCCTCGCCACCGT 62.776 60.000 0.00 0.00 35.54 4.83
64 65 3.379445 TTCTCCCTCGCCACCGTC 61.379 66.667 0.00 0.00 35.54 4.79
65 66 3.881019 TTCTCCCTCGCCACCGTCT 62.881 63.158 0.00 0.00 35.54 4.18
66 67 3.382832 CTCCCTCGCCACCGTCTT 61.383 66.667 0.00 0.00 35.54 3.01
67 68 3.649277 CTCCCTCGCCACCGTCTTG 62.649 68.421 0.00 0.00 35.54 3.02
68 69 4.760047 CCCTCGCCACCGTCTTGG 62.760 72.222 0.00 0.00 46.41 3.61
74 75 2.267961 CCACCGTCTTGGCCTACC 59.732 66.667 3.32 0.00 43.94 3.18
86 87 2.668632 CCTACCAGGCTGCCGAAA 59.331 61.111 13.96 0.00 0.00 3.46
87 88 1.224592 CCTACCAGGCTGCCGAAAT 59.775 57.895 13.96 3.00 0.00 2.17
88 89 0.815615 CCTACCAGGCTGCCGAAATC 60.816 60.000 13.96 0.00 0.00 2.17
89 90 1.153449 TACCAGGCTGCCGAAATCG 60.153 57.895 13.96 0.00 39.44 3.34
90 91 1.895020 TACCAGGCTGCCGAAATCGT 61.895 55.000 13.96 6.79 37.74 3.73
91 92 2.753966 CCAGGCTGCCGAAATCGTG 61.754 63.158 13.96 3.84 37.74 4.35
92 93 2.034879 CAGGCTGCCGAAATCGTGT 61.035 57.895 13.96 0.00 37.74 4.49
93 94 1.302511 AGGCTGCCGAAATCGTGTT 60.303 52.632 13.96 0.00 37.74 3.32
94 95 1.134694 GGCTGCCGAAATCGTGTTC 59.865 57.895 1.35 0.00 37.74 3.18
95 96 1.573829 GGCTGCCGAAATCGTGTTCA 61.574 55.000 1.35 0.00 37.74 3.18
96 97 0.452784 GCTGCCGAAATCGTGTTCAC 60.453 55.000 1.79 0.00 37.74 3.18
97 98 0.165944 CTGCCGAAATCGTGTTCACC 59.834 55.000 1.79 0.00 37.74 4.02
98 99 0.533085 TGCCGAAATCGTGTTCACCA 60.533 50.000 1.79 0.00 37.74 4.17
99 100 0.165944 GCCGAAATCGTGTTCACCAG 59.834 55.000 1.79 0.00 37.74 4.00
100 101 0.165944 CCGAAATCGTGTTCACCAGC 59.834 55.000 1.79 0.00 37.74 4.85
101 102 1.148310 CGAAATCGTGTTCACCAGCT 58.852 50.000 0.00 0.00 34.11 4.24
102 103 1.531149 CGAAATCGTGTTCACCAGCTT 59.469 47.619 0.00 0.00 34.11 3.74
103 104 2.411547 CGAAATCGTGTTCACCAGCTTC 60.412 50.000 0.00 0.00 34.11 3.86
104 105 1.523758 AATCGTGTTCACCAGCTTCC 58.476 50.000 0.00 0.00 0.00 3.46
105 106 0.396435 ATCGTGTTCACCAGCTTCCA 59.604 50.000 0.00 0.00 0.00 3.53
106 107 0.396435 TCGTGTTCACCAGCTTCCAT 59.604 50.000 0.00 0.00 0.00 3.41
107 108 0.798776 CGTGTTCACCAGCTTCCATC 59.201 55.000 0.00 0.00 0.00 3.51
108 109 0.798776 GTGTTCACCAGCTTCCATCG 59.201 55.000 0.00 0.00 0.00 3.84
109 110 0.396435 TGTTCACCAGCTTCCATCGT 59.604 50.000 0.00 0.00 0.00 3.73
110 111 0.798776 GTTCACCAGCTTCCATCGTG 59.201 55.000 0.00 0.00 0.00 4.35
111 112 0.684535 TTCACCAGCTTCCATCGTGA 59.315 50.000 0.00 0.00 0.00 4.35
112 113 0.247460 TCACCAGCTTCCATCGTGAG 59.753 55.000 0.00 0.00 0.00 3.51
113 114 0.036952 CACCAGCTTCCATCGTGAGT 60.037 55.000 0.00 0.00 0.00 3.41
114 115 0.247736 ACCAGCTTCCATCGTGAGTC 59.752 55.000 0.00 0.00 0.00 3.36
115 116 0.247460 CCAGCTTCCATCGTGAGTCA 59.753 55.000 0.00 0.00 0.00 3.41
116 117 1.134580 CCAGCTTCCATCGTGAGTCAT 60.135 52.381 0.00 0.00 0.00 3.06
117 118 1.931841 CAGCTTCCATCGTGAGTCATG 59.068 52.381 5.96 5.96 0.00 3.07
118 119 1.552337 AGCTTCCATCGTGAGTCATGT 59.448 47.619 12.07 0.00 0.00 3.21
119 120 1.662629 GCTTCCATCGTGAGTCATGTG 59.337 52.381 12.07 9.43 0.00 3.21
120 121 2.932622 GCTTCCATCGTGAGTCATGTGT 60.933 50.000 12.07 0.22 0.00 3.72
121 122 2.368655 TCCATCGTGAGTCATGTGTG 57.631 50.000 12.07 11.58 0.00 3.82
122 123 1.618343 TCCATCGTGAGTCATGTGTGT 59.382 47.619 12.07 0.00 0.00 3.72
123 124 2.823154 TCCATCGTGAGTCATGTGTGTA 59.177 45.455 12.07 0.00 0.00 2.90
124 125 2.923655 CCATCGTGAGTCATGTGTGTAC 59.076 50.000 12.07 0.00 0.00 2.90
125 126 2.325509 TCGTGAGTCATGTGTGTACG 57.674 50.000 12.07 0.89 0.00 3.67
126 127 1.874872 TCGTGAGTCATGTGTGTACGA 59.125 47.619 12.07 3.35 36.83 3.43
127 128 1.976728 CGTGAGTCATGTGTGTACGAC 59.023 52.381 4.02 0.00 32.36 4.34
128 129 2.325761 GTGAGTCATGTGTGTACGACC 58.674 52.381 0.00 0.00 0.00 4.79
129 130 1.957877 TGAGTCATGTGTGTACGACCA 59.042 47.619 0.00 0.00 0.00 4.02
130 131 2.287970 TGAGTCATGTGTGTACGACCAC 60.288 50.000 0.00 0.00 35.86 4.16
131 132 1.057636 GTCATGTGTGTACGACCACG 58.942 55.000 0.00 0.00 45.75 4.94
141 142 3.244105 CGACCACGTTCTTGCTGG 58.756 61.111 0.00 0.00 34.56 4.85
142 143 2.317609 CGACCACGTTCTTGCTGGG 61.318 63.158 0.00 0.00 34.56 4.45
143 144 2.594592 ACCACGTTCTTGCTGGGC 60.595 61.111 0.00 0.00 0.00 5.36
144 145 2.281761 CCACGTTCTTGCTGGGCT 60.282 61.111 0.00 0.00 0.00 5.19
145 146 1.003839 CCACGTTCTTGCTGGGCTA 60.004 57.895 0.00 0.00 0.00 3.93
146 147 1.021390 CCACGTTCTTGCTGGGCTAG 61.021 60.000 0.00 0.00 33.07 3.42
147 148 0.037326 CACGTTCTTGCTGGGCTAGA 60.037 55.000 0.43 0.11 38.48 2.43
148 149 0.247736 ACGTTCTTGCTGGGCTAGAG 59.752 55.000 0.43 0.00 40.83 2.43
149 150 0.460987 CGTTCTTGCTGGGCTAGAGG 60.461 60.000 0.43 0.00 40.83 3.69
150 151 0.746204 GTTCTTGCTGGGCTAGAGGC 60.746 60.000 0.43 0.00 40.83 4.70
151 152 1.200760 TTCTTGCTGGGCTAGAGGCA 61.201 55.000 0.43 0.00 40.83 4.75
152 153 1.200760 TCTTGCTGGGCTAGAGGCAA 61.201 55.000 0.43 0.00 44.01 4.52
153 154 0.106819 CTTGCTGGGCTAGAGGCAAT 60.107 55.000 0.43 0.00 42.51 3.56
154 155 0.332632 TTGCTGGGCTAGAGGCAATT 59.667 50.000 0.43 0.00 44.01 2.32
155 156 1.212375 TGCTGGGCTAGAGGCAATTA 58.788 50.000 0.43 0.00 44.01 1.40
156 157 1.141657 TGCTGGGCTAGAGGCAATTAG 59.858 52.381 0.43 0.00 44.01 1.73
157 158 1.417890 GCTGGGCTAGAGGCAATTAGA 59.582 52.381 0.43 0.00 44.01 2.10
158 159 2.808567 GCTGGGCTAGAGGCAATTAGAC 60.809 54.545 0.43 0.00 44.01 2.59
159 160 1.768870 TGGGCTAGAGGCAATTAGACC 59.231 52.381 5.38 7.62 44.06 3.85
160 161 1.072489 GGGCTAGAGGCAATTAGACCC 59.928 57.143 5.38 5.56 38.87 4.46
161 162 2.050918 GGCTAGAGGCAATTAGACCCT 58.949 52.381 0.00 0.00 44.01 4.34
162 163 2.037902 GGCTAGAGGCAATTAGACCCTC 59.962 54.545 0.00 0.00 44.34 4.30
163 164 2.037902 GCTAGAGGCAATTAGACCCTCC 59.962 54.545 0.00 0.00 44.95 4.30
164 165 2.577772 AGAGGCAATTAGACCCTCCT 57.422 50.000 2.49 0.00 44.95 3.69
165 166 3.708236 AGAGGCAATTAGACCCTCCTA 57.292 47.619 2.49 0.00 44.95 2.94
166 167 4.008916 AGAGGCAATTAGACCCTCCTAA 57.991 45.455 2.49 0.00 44.95 2.69
167 168 4.571951 AGAGGCAATTAGACCCTCCTAAT 58.428 43.478 2.49 0.00 44.95 1.73
168 169 4.595350 AGAGGCAATTAGACCCTCCTAATC 59.405 45.833 2.49 0.00 44.95 1.75
169 170 4.307259 AGGCAATTAGACCCTCCTAATCA 58.693 43.478 0.00 0.00 38.12 2.57
170 171 4.726825 AGGCAATTAGACCCTCCTAATCAA 59.273 41.667 0.00 0.00 38.12 2.57
171 172 5.066593 GGCAATTAGACCCTCCTAATCAAG 58.933 45.833 0.00 0.00 38.12 3.02
172 173 5.163195 GGCAATTAGACCCTCCTAATCAAGA 60.163 44.000 0.00 0.00 38.12 3.02
173 174 5.760743 GCAATTAGACCCTCCTAATCAAGAC 59.239 44.000 0.00 0.00 38.12 3.01
174 175 6.408662 GCAATTAGACCCTCCTAATCAAGACT 60.409 42.308 0.00 0.00 38.12 3.24
175 176 7.569240 CAATTAGACCCTCCTAATCAAGACTT 58.431 38.462 0.00 0.00 38.12 3.01
176 177 6.546428 TTAGACCCTCCTAATCAAGACTTG 57.454 41.667 9.03 9.03 0.00 3.16
177 178 3.198853 AGACCCTCCTAATCAAGACTTGC 59.801 47.826 10.50 0.00 0.00 4.01
178 179 3.185455 ACCCTCCTAATCAAGACTTGCT 58.815 45.455 10.50 0.00 0.00 3.91
179 180 3.589288 ACCCTCCTAATCAAGACTTGCTT 59.411 43.478 10.50 9.75 37.29 3.91
180 181 4.043435 ACCCTCCTAATCAAGACTTGCTTT 59.957 41.667 10.50 8.95 33.60 3.51
181 182 4.397417 CCCTCCTAATCAAGACTTGCTTTG 59.603 45.833 10.50 8.09 33.60 2.77
182 183 5.248640 CCTCCTAATCAAGACTTGCTTTGA 58.751 41.667 10.50 6.86 33.60 2.69
183 184 5.353678 CCTCCTAATCAAGACTTGCTTTGAG 59.646 44.000 10.50 14.36 33.60 3.02
184 185 6.114187 TCCTAATCAAGACTTGCTTTGAGA 57.886 37.500 10.50 5.60 33.60 3.27
185 186 6.715280 TCCTAATCAAGACTTGCTTTGAGAT 58.285 36.000 10.50 0.00 33.60 2.75
186 187 6.596888 TCCTAATCAAGACTTGCTTTGAGATG 59.403 38.462 10.50 0.00 33.60 2.90
187 188 5.640189 AATCAAGACTTGCTTTGAGATGG 57.360 39.130 10.50 0.00 33.60 3.51
188 189 4.356405 TCAAGACTTGCTTTGAGATGGA 57.644 40.909 10.50 0.00 33.60 3.41
189 190 4.717877 TCAAGACTTGCTTTGAGATGGAA 58.282 39.130 10.50 0.00 33.60 3.53
190 191 4.758674 TCAAGACTTGCTTTGAGATGGAAG 59.241 41.667 10.50 0.00 37.58 3.46
191 192 3.683802 AGACTTGCTTTGAGATGGAAGG 58.316 45.455 0.00 0.00 36.22 3.46
192 193 3.073650 AGACTTGCTTTGAGATGGAAGGT 59.926 43.478 0.00 0.00 36.22 3.50
193 194 3.152341 ACTTGCTTTGAGATGGAAGGTG 58.848 45.455 0.00 0.00 36.22 4.00
194 195 1.538047 TGCTTTGAGATGGAAGGTGC 58.462 50.000 0.00 0.00 0.00 5.01
195 196 0.813821 GCTTTGAGATGGAAGGTGCC 59.186 55.000 0.00 0.00 0.00 5.01
196 197 1.615384 GCTTTGAGATGGAAGGTGCCT 60.615 52.381 0.00 0.00 0.00 4.75
197 198 2.356125 GCTTTGAGATGGAAGGTGCCTA 60.356 50.000 0.00 0.00 0.00 3.93
198 199 3.274288 CTTTGAGATGGAAGGTGCCTAC 58.726 50.000 0.00 0.00 0.00 3.18
199 200 1.951209 TGAGATGGAAGGTGCCTACA 58.049 50.000 0.00 0.00 0.00 2.74
200 201 2.481441 TGAGATGGAAGGTGCCTACAT 58.519 47.619 7.71 7.71 0.00 2.29
201 202 2.435805 TGAGATGGAAGGTGCCTACATC 59.564 50.000 19.57 19.57 39.11 3.06
202 203 2.435805 GAGATGGAAGGTGCCTACATCA 59.564 50.000 24.69 10.10 40.20 3.07
203 204 2.437281 AGATGGAAGGTGCCTACATCAG 59.563 50.000 24.69 0.00 40.20 2.90
204 205 0.253044 TGGAAGGTGCCTACATCAGC 59.747 55.000 0.00 0.00 0.00 4.26
205 206 0.543749 GGAAGGTGCCTACATCAGCT 59.456 55.000 0.00 0.00 43.28 4.24
206 207 1.762957 GGAAGGTGCCTACATCAGCTA 59.237 52.381 0.00 0.00 40.91 3.32
207 208 2.483889 GGAAGGTGCCTACATCAGCTAC 60.484 54.545 0.00 0.00 40.91 3.58
208 209 1.123928 AGGTGCCTACATCAGCTACC 58.876 55.000 0.00 0.00 40.11 3.18
209 210 1.123928 GGTGCCTACATCAGCTACCT 58.876 55.000 0.00 0.00 31.54 3.08
210 211 1.069358 GGTGCCTACATCAGCTACCTC 59.931 57.143 0.00 0.00 31.54 3.85
211 212 1.757118 GTGCCTACATCAGCTACCTCA 59.243 52.381 0.00 0.00 0.00 3.86
212 213 2.366916 GTGCCTACATCAGCTACCTCAT 59.633 50.000 0.00 0.00 0.00 2.90
213 214 2.630098 TGCCTACATCAGCTACCTCATC 59.370 50.000 0.00 0.00 0.00 2.92
214 215 2.352225 GCCTACATCAGCTACCTCATCG 60.352 54.545 0.00 0.00 0.00 3.84
215 216 2.352225 CCTACATCAGCTACCTCATCGC 60.352 54.545 0.00 0.00 0.00 4.58
216 217 0.390860 ACATCAGCTACCTCATCGCC 59.609 55.000 0.00 0.00 0.00 5.54
217 218 0.678395 CATCAGCTACCTCATCGCCT 59.322 55.000 0.00 0.00 0.00 5.52
218 219 1.889170 CATCAGCTACCTCATCGCCTA 59.111 52.381 0.00 0.00 0.00 3.93
219 220 1.610363 TCAGCTACCTCATCGCCTAG 58.390 55.000 0.00 0.00 0.00 3.02
220 221 0.038709 CAGCTACCTCATCGCCTAGC 60.039 60.000 0.00 0.00 33.19 3.42
221 222 0.178975 AGCTACCTCATCGCCTAGCT 60.179 55.000 0.00 0.00 37.67 3.32
222 223 0.242555 GCTACCTCATCGCCTAGCTC 59.757 60.000 0.00 0.00 30.81 4.09
223 224 1.610363 CTACCTCATCGCCTAGCTCA 58.390 55.000 0.00 0.00 0.00 4.26
224 225 1.268352 CTACCTCATCGCCTAGCTCAC 59.732 57.143 0.00 0.00 0.00 3.51
225 226 1.365633 CCTCATCGCCTAGCTCACC 59.634 63.158 0.00 0.00 0.00 4.02
226 227 1.395045 CCTCATCGCCTAGCTCACCA 61.395 60.000 0.00 0.00 0.00 4.17
227 228 0.461548 CTCATCGCCTAGCTCACCAA 59.538 55.000 0.00 0.00 0.00 3.67
228 229 0.461548 TCATCGCCTAGCTCACCAAG 59.538 55.000 0.00 0.00 0.00 3.61
229 230 0.461548 CATCGCCTAGCTCACCAAGA 59.538 55.000 0.00 0.00 0.00 3.02
230 231 1.069823 CATCGCCTAGCTCACCAAGAT 59.930 52.381 0.00 0.00 0.00 2.40
231 232 0.461548 TCGCCTAGCTCACCAAGATG 59.538 55.000 0.00 0.00 0.00 2.90
232 233 0.531532 CGCCTAGCTCACCAAGATGG 60.532 60.000 0.00 0.00 45.02 3.51
242 243 2.460330 CCAAGATGGTGCTCGTCAC 58.540 57.895 2.71 2.71 44.90 3.67
249 250 2.183300 GTGCTCGTCACCGGCATA 59.817 61.111 0.00 0.00 40.56 3.14
250 251 1.878522 GTGCTCGTCACCGGCATAG 60.879 63.158 0.00 0.00 40.56 2.23
251 252 2.049767 TGCTCGTCACCGGCATAGA 61.050 57.895 0.00 0.00 36.04 1.98
252 253 1.589196 GCTCGTCACCGGCATAGAC 60.589 63.158 0.00 3.94 32.67 2.59
253 254 1.807226 CTCGTCACCGGCATAGACA 59.193 57.895 0.00 0.00 32.68 3.41
254 255 0.385751 CTCGTCACCGGCATAGACAT 59.614 55.000 0.00 0.00 32.68 3.06
255 256 1.607148 CTCGTCACCGGCATAGACATA 59.393 52.381 0.00 0.00 32.68 2.29
256 257 1.335810 TCGTCACCGGCATAGACATAC 59.664 52.381 0.00 0.00 32.68 2.39
257 258 1.602165 CGTCACCGGCATAGACATACC 60.602 57.143 0.00 0.00 32.68 2.73
258 259 0.671796 TCACCGGCATAGACATACCG 59.328 55.000 0.00 0.00 40.28 4.02
261 262 3.794690 CGGCATAGACATACCGGAG 57.205 57.895 9.46 0.00 37.42 4.63
262 263 0.959553 CGGCATAGACATACCGGAGT 59.040 55.000 9.46 2.96 37.42 3.85
263 264 1.335964 CGGCATAGACATACCGGAGTG 60.336 57.143 9.46 9.08 37.42 3.51
264 265 1.000955 GGCATAGACATACCGGAGTGG 59.999 57.143 9.46 0.00 46.41 4.00
265 266 1.605712 GCATAGACATACCGGAGTGGC 60.606 57.143 9.46 8.78 43.94 5.01
266 267 1.000955 CATAGACATACCGGAGTGGCC 59.999 57.143 9.46 0.00 43.94 5.36
275 276 2.270850 GGAGTGGCCGCATGGTAA 59.729 61.111 20.59 0.00 37.67 2.85
276 277 1.819632 GGAGTGGCCGCATGGTAAG 60.820 63.158 20.59 0.00 37.67 2.34
277 278 2.438434 AGTGGCCGCATGGTAAGC 60.438 61.111 20.59 0.00 37.67 3.09
278 279 2.438434 GTGGCCGCATGGTAAGCT 60.438 61.111 12.58 0.00 37.67 3.74
279 280 2.124736 TGGCCGCATGGTAAGCTC 60.125 61.111 0.00 0.00 37.67 4.09
280 281 3.272334 GGCCGCATGGTAAGCTCG 61.272 66.667 0.00 0.00 37.67 5.03
281 282 2.511600 GCCGCATGGTAAGCTCGT 60.512 61.111 0.00 0.00 37.67 4.18
282 283 2.813179 GCCGCATGGTAAGCTCGTG 61.813 63.158 0.00 0.00 37.67 4.35
283 284 1.153647 CCGCATGGTAAGCTCGTGA 60.154 57.895 0.00 0.00 0.00 4.35
284 285 0.530650 CCGCATGGTAAGCTCGTGAT 60.531 55.000 0.00 0.00 0.00 3.06
285 286 0.855349 CGCATGGTAAGCTCGTGATC 59.145 55.000 0.00 0.00 0.00 2.92
286 287 1.536922 CGCATGGTAAGCTCGTGATCT 60.537 52.381 0.00 0.00 0.00 2.75
287 288 2.131183 GCATGGTAAGCTCGTGATCTC 58.869 52.381 0.00 0.00 0.00 2.75
288 289 2.223923 GCATGGTAAGCTCGTGATCTCT 60.224 50.000 0.00 0.00 0.00 3.10
289 290 3.379240 CATGGTAAGCTCGTGATCTCTG 58.621 50.000 0.00 0.00 0.00 3.35
290 291 1.751351 TGGTAAGCTCGTGATCTCTGG 59.249 52.381 0.00 0.00 0.00 3.86
291 292 1.067821 GGTAAGCTCGTGATCTCTGGG 59.932 57.143 0.00 0.00 0.00 4.45
292 293 2.025155 GTAAGCTCGTGATCTCTGGGA 58.975 52.381 0.00 0.00 0.00 4.37
293 294 1.561643 AAGCTCGTGATCTCTGGGAA 58.438 50.000 0.00 0.00 0.00 3.97
294 295 1.110442 AGCTCGTGATCTCTGGGAAG 58.890 55.000 0.00 0.00 0.00 3.46
295 296 1.107114 GCTCGTGATCTCTGGGAAGA 58.893 55.000 0.00 0.00 0.00 2.87
296 297 1.066908 GCTCGTGATCTCTGGGAAGAG 59.933 57.143 0.00 0.00 37.28 2.85
298 299 2.618241 CTCGTGATCTCTGGGAAGAGAG 59.382 54.545 10.88 0.00 46.60 3.20
299 300 2.025793 TCGTGATCTCTGGGAAGAGAGT 60.026 50.000 10.88 0.82 46.60 3.24
300 301 2.098934 CGTGATCTCTGGGAAGAGAGTG 59.901 54.545 10.88 0.00 46.60 3.51
301 302 3.360867 GTGATCTCTGGGAAGAGAGTGA 58.639 50.000 10.88 0.00 46.60 3.41
302 303 3.130340 GTGATCTCTGGGAAGAGAGTGAC 59.870 52.174 10.88 4.38 46.60 3.67
303 304 3.011144 TGATCTCTGGGAAGAGAGTGACT 59.989 47.826 10.88 0.00 46.60 3.41
304 305 4.228438 TGATCTCTGGGAAGAGAGTGACTA 59.772 45.833 10.88 0.00 46.60 2.59
305 306 4.871871 TCTCTGGGAAGAGAGTGACTAT 57.128 45.455 1.30 0.00 39.74 2.12
306 307 4.787551 TCTCTGGGAAGAGAGTGACTATC 58.212 47.826 0.00 0.00 39.74 2.08
307 308 4.476846 TCTCTGGGAAGAGAGTGACTATCT 59.523 45.833 3.51 3.51 39.74 1.98
308 309 4.787551 TCTGGGAAGAGAGTGACTATCTC 58.212 47.826 10.49 1.86 42.95 2.75
309 310 3.888930 CTGGGAAGAGAGTGACTATCTCC 59.111 52.174 10.49 12.46 43.53 3.71
310 311 3.529734 TGGGAAGAGAGTGACTATCTCCT 59.470 47.826 10.49 0.00 43.53 3.69
311 312 4.017037 TGGGAAGAGAGTGACTATCTCCTT 60.017 45.833 10.49 0.00 43.53 3.36
312 313 4.583073 GGGAAGAGAGTGACTATCTCCTTC 59.417 50.000 10.49 4.64 43.53 3.46
313 314 5.445964 GGAAGAGAGTGACTATCTCCTTCT 58.554 45.833 10.49 0.00 43.53 2.85
314 315 5.891551 GGAAGAGAGTGACTATCTCCTTCTT 59.108 44.000 10.49 0.00 43.53 2.52
315 316 6.183360 GGAAGAGAGTGACTATCTCCTTCTTG 60.183 46.154 10.49 0.00 43.53 3.02
316 317 5.200483 AGAGAGTGACTATCTCCTTCTTGG 58.800 45.833 3.51 0.00 43.53 3.61
317 318 5.044476 AGAGAGTGACTATCTCCTTCTTGGA 60.044 44.000 3.51 0.00 43.53 3.53
325 326 1.289066 TCCTTCTTGGAGCACGTCG 59.711 57.895 0.00 0.00 40.56 5.12
326 327 1.006102 CCTTCTTGGAGCACGTCGT 60.006 57.895 0.00 0.00 38.35 4.34
327 328 1.009389 CCTTCTTGGAGCACGTCGTC 61.009 60.000 0.00 0.00 38.35 4.20
328 329 0.318699 CTTCTTGGAGCACGTCGTCA 60.319 55.000 0.00 0.00 0.00 4.35
329 330 0.317160 TTCTTGGAGCACGTCGTCAT 59.683 50.000 0.00 0.00 0.00 3.06
330 331 1.170442 TCTTGGAGCACGTCGTCATA 58.830 50.000 0.00 0.00 0.00 2.15
331 332 1.542472 TCTTGGAGCACGTCGTCATAA 59.458 47.619 0.00 0.00 0.00 1.90
332 333 1.654105 CTTGGAGCACGTCGTCATAAC 59.346 52.381 0.00 0.00 0.00 1.89
333 334 0.885879 TGGAGCACGTCGTCATAACT 59.114 50.000 0.00 0.00 0.00 2.24
334 335 2.086094 TGGAGCACGTCGTCATAACTA 58.914 47.619 0.00 0.00 0.00 2.24
335 336 2.686405 TGGAGCACGTCGTCATAACTAT 59.314 45.455 0.00 0.00 0.00 2.12
336 337 3.129813 TGGAGCACGTCGTCATAACTATT 59.870 43.478 0.00 0.00 0.00 1.73
337 338 3.486108 GGAGCACGTCGTCATAACTATTG 59.514 47.826 0.00 0.00 0.00 1.90
338 339 4.103357 GAGCACGTCGTCATAACTATTGT 58.897 43.478 0.00 0.00 0.00 2.71
339 340 5.239359 AGCACGTCGTCATAACTATTGTA 57.761 39.130 0.00 0.00 0.00 2.41
340 341 5.271625 AGCACGTCGTCATAACTATTGTAG 58.728 41.667 0.00 0.00 0.00 2.74
341 342 5.065602 AGCACGTCGTCATAACTATTGTAGA 59.934 40.000 0.00 0.00 0.00 2.59
342 343 5.170981 GCACGTCGTCATAACTATTGTAGAC 59.829 44.000 0.00 0.00 0.00 2.59
343 344 5.391721 CACGTCGTCATAACTATTGTAGACG 59.608 44.000 17.20 17.20 43.38 4.18
344 345 5.291858 ACGTCGTCATAACTATTGTAGACGA 59.708 40.000 19.94 19.94 44.55 4.20
345 346 5.839753 CGTCGTCATAACTATTGTAGACGAG 59.160 44.000 22.41 16.07 45.82 4.18
346 347 6.292008 CGTCGTCATAACTATTGTAGACGAGA 60.292 42.308 22.41 8.76 45.82 4.04
347 348 7.064674 GTCGTCATAACTATTGTAGACGAGAG 58.935 42.308 22.41 0.00 45.82 3.20
348 349 6.202379 TCGTCATAACTATTGTAGACGAGAGG 59.798 42.308 19.94 4.55 43.33 3.69
349 350 6.202379 CGTCATAACTATTGTAGACGAGAGGA 59.798 42.308 17.93 0.00 42.82 3.71
350 351 7.354257 GTCATAACTATTGTAGACGAGAGGAC 58.646 42.308 0.00 0.00 0.00 3.85
351 352 7.012138 GTCATAACTATTGTAGACGAGAGGACA 59.988 40.741 0.00 0.00 0.00 4.02
352 353 7.720074 TCATAACTATTGTAGACGAGAGGACAT 59.280 37.037 0.00 0.00 0.00 3.06
353 354 9.000486 CATAACTATTGTAGACGAGAGGACATA 58.000 37.037 0.00 0.00 0.00 2.29
354 355 7.876936 AACTATTGTAGACGAGAGGACATAA 57.123 36.000 0.00 0.00 0.00 1.90
381 382 2.745037 GACGTACAGGGTGGCCAA 59.255 61.111 7.24 0.00 0.00 4.52
385 386 1.458927 GTACAGGGTGGCCAAGGTT 59.541 57.895 7.24 0.00 0.00 3.50
473 482 0.600557 CGGCCCAATAAACACAAGCA 59.399 50.000 0.00 0.00 0.00 3.91
476 485 2.610232 GGCCCAATAAACACAAGCACAG 60.610 50.000 0.00 0.00 0.00 3.66
523 540 2.838225 CCCTAGTCCCCGACGCAT 60.838 66.667 0.00 0.00 37.67 4.73
554 571 3.953775 CCCAGTGCTTGACCCCGT 61.954 66.667 0.00 0.00 0.00 5.28
569 586 4.704833 CGTGACCCCCAGGCAGTG 62.705 72.222 0.00 0.00 36.11 3.66
570 587 3.249189 GTGACCCCCAGGCAGTGA 61.249 66.667 0.00 0.00 36.11 3.41
571 588 2.930019 TGACCCCCAGGCAGTGAG 60.930 66.667 0.00 0.00 36.11 3.51
572 589 3.721706 GACCCCCAGGCAGTGAGG 61.722 72.222 0.00 0.00 36.11 3.86
641 682 3.741476 CTGCTGCCGCCAGGAAAC 61.741 66.667 0.00 0.00 39.04 2.78
642 683 4.269523 TGCTGCCGCCAGGAAACT 62.270 61.111 0.00 0.00 46.44 2.66
659 700 4.377760 TCCGCCTCTCCTCCGGTT 62.378 66.667 0.00 0.00 42.48 4.44
880 1018 6.997239 ACTCCGATTTAAGGTACCAAAATC 57.003 37.500 27.26 27.26 36.64 2.17
938 1078 6.162079 CCTATGCTATCCACTACATGAACAG 58.838 44.000 0.00 0.00 0.00 3.16
1048 1196 4.764172 TCTTTTCCAGAGAGAAGCTATGC 58.236 43.478 0.00 0.00 34.86 3.14
1120 1268 0.732571 AACCAGCGAAGTTGTGTGTG 59.267 50.000 0.00 0.00 36.88 3.82
1122 1270 1.134640 ACCAGCGAAGTTGTGTGTGTA 60.135 47.619 0.00 0.00 36.88 2.90
1200 1348 5.181748 ACCATAGAGCAAACTGAAGATGTC 58.818 41.667 0.00 0.00 0.00 3.06
1208 1357 0.247736 ACTGAAGATGTCTCACCGCC 59.752 55.000 0.00 0.00 0.00 6.13
1232 1381 4.200874 TCGCCACCGGTTTATGATTTTAT 58.799 39.130 2.97 0.00 34.56 1.40
1233 1382 4.273969 TCGCCACCGGTTTATGATTTTATC 59.726 41.667 2.97 0.00 34.56 1.75
1459 1611 5.476614 AGAAGGAATCTGCATTTTGCTTTC 58.523 37.500 14.02 9.18 45.31 2.62
1594 1748 4.682778 TCGGAGAATCGGATGGTTAATT 57.317 40.909 0.00 0.00 39.70 1.40
1717 1872 7.241663 TGCCTTTAAATAGCACAATACTACG 57.758 36.000 8.54 0.00 0.00 3.51
1910 2085 6.515272 AGCAAATAAGGTGATAACAAGGTG 57.485 37.500 0.00 0.00 0.00 4.00
1912 2087 5.105756 GCAAATAAGGTGATAACAAGGTGCT 60.106 40.000 0.00 0.00 0.00 4.40
2042 2217 4.081531 AGTCCTTTGCTCTCTGATTCTCTG 60.082 45.833 0.00 0.00 0.00 3.35
2058 2233 3.797039 TCTCTGACAACTCACAACCAAG 58.203 45.455 0.00 0.00 0.00 3.61
2203 2378 7.094508 TCATCAGACTCAAACTCTATCTCAC 57.905 40.000 0.00 0.00 0.00 3.51
2219 2394 3.321039 TCTCACCCTCATTGATAGGCAT 58.679 45.455 3.39 0.00 32.34 4.40
2288 2463 4.857679 TCTCTCACCCTTAGACTTCTACC 58.142 47.826 0.00 0.00 0.00 3.18
2292 2467 3.077088 TCACCCTTAGACTTCTACCAGGT 59.923 47.826 0.00 0.00 28.75 4.00
2295 2470 4.202803 ACCCTTAGACTTCTACCAGGTTCT 60.203 45.833 0.00 0.00 28.75 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.247814 GCTCGCGTTTGACATCATGG 60.248 55.000 5.77 0.00 0.00 3.66
1 2 0.247814 GGCTCGCGTTTGACATCATG 60.248 55.000 5.77 0.00 0.00 3.07
4 5 1.710339 GAGGCTCGCGTTTGACATC 59.290 57.895 5.77 0.00 0.00 3.06
5 6 2.094659 CGAGGCTCGCGTTTGACAT 61.095 57.895 25.31 0.00 31.14 3.06
6 7 2.733218 CGAGGCTCGCGTTTGACA 60.733 61.111 25.31 0.00 31.14 3.58
16 17 3.581687 GATCATCCCGGCGAGGCTC 62.582 68.421 9.30 3.87 39.21 4.70
17 18 3.620785 GATCATCCCGGCGAGGCT 61.621 66.667 9.30 0.00 39.21 4.58
18 19 3.170490 AAGATCATCCCGGCGAGGC 62.170 63.158 9.30 0.00 39.21 4.70
19 20 1.005630 GAAGATCATCCCGGCGAGG 60.006 63.158 9.30 8.47 40.63 4.63
20 21 0.038709 GAGAAGATCATCCCGGCGAG 60.039 60.000 9.30 0.00 0.00 5.03
21 22 1.796190 CGAGAAGATCATCCCGGCGA 61.796 60.000 9.30 0.00 0.00 5.54
22 23 1.372251 CGAGAAGATCATCCCGGCG 60.372 63.158 0.00 0.00 0.00 6.46
23 24 1.666234 GCGAGAAGATCATCCCGGC 60.666 63.158 4.05 0.00 0.00 6.13
24 25 1.005630 GGCGAGAAGATCATCCCGG 60.006 63.158 4.05 0.00 0.00 5.73
25 26 1.372251 CGGCGAGAAGATCATCCCG 60.372 63.158 0.00 0.00 0.00 5.14
26 27 0.959553 TACGGCGAGAAGATCATCCC 59.040 55.000 16.62 0.00 0.00 3.85
27 28 1.609555 ACTACGGCGAGAAGATCATCC 59.390 52.381 16.62 0.00 0.00 3.51
28 29 3.003897 AGAACTACGGCGAGAAGATCATC 59.996 47.826 16.62 7.05 0.00 2.92
29 30 2.952978 AGAACTACGGCGAGAAGATCAT 59.047 45.455 16.62 0.00 0.00 2.45
30 31 2.355132 GAGAACTACGGCGAGAAGATCA 59.645 50.000 16.62 0.00 0.00 2.92
31 32 2.287129 GGAGAACTACGGCGAGAAGATC 60.287 54.545 16.62 11.89 0.00 2.75
32 33 1.677052 GGAGAACTACGGCGAGAAGAT 59.323 52.381 16.62 2.20 0.00 2.40
33 34 1.093159 GGAGAACTACGGCGAGAAGA 58.907 55.000 16.62 0.00 0.00 2.87
34 35 0.100861 GGGAGAACTACGGCGAGAAG 59.899 60.000 16.62 10.57 0.00 2.85
35 36 0.323178 AGGGAGAACTACGGCGAGAA 60.323 55.000 16.62 0.00 0.00 2.87
36 37 0.747283 GAGGGAGAACTACGGCGAGA 60.747 60.000 16.62 0.00 0.00 4.04
37 38 1.728672 GAGGGAGAACTACGGCGAG 59.271 63.158 16.62 9.48 0.00 5.03
38 39 2.110967 CGAGGGAGAACTACGGCGA 61.111 63.158 16.62 0.00 0.00 5.54
39 40 2.408022 CGAGGGAGAACTACGGCG 59.592 66.667 4.80 4.80 0.00 6.46
40 41 2.104530 GCGAGGGAGAACTACGGC 59.895 66.667 0.00 0.00 0.00 5.68
41 42 2.050350 TGGCGAGGGAGAACTACGG 61.050 63.158 0.00 0.00 0.00 4.02
42 43 1.139095 GTGGCGAGGGAGAACTACG 59.861 63.158 0.00 0.00 0.00 3.51
43 44 1.516423 GGTGGCGAGGGAGAACTAC 59.484 63.158 0.00 0.00 0.00 2.73
44 45 2.050350 CGGTGGCGAGGGAGAACTA 61.050 63.158 0.00 0.00 0.00 2.24
45 46 3.382832 CGGTGGCGAGGGAGAACT 61.383 66.667 0.00 0.00 0.00 3.01
46 47 3.644399 GACGGTGGCGAGGGAGAAC 62.644 68.421 0.00 0.00 0.00 3.01
47 48 3.379445 GACGGTGGCGAGGGAGAA 61.379 66.667 0.00 0.00 0.00 2.87
48 49 3.881019 AAGACGGTGGCGAGGGAGA 62.881 63.158 0.00 0.00 0.00 3.71
49 50 3.382832 AAGACGGTGGCGAGGGAG 61.383 66.667 0.00 0.00 0.00 4.30
50 51 3.691342 CAAGACGGTGGCGAGGGA 61.691 66.667 0.00 0.00 0.00 4.20
51 52 4.760047 CCAAGACGGTGGCGAGGG 62.760 72.222 0.00 0.00 0.00 4.30
57 58 2.267961 GGTAGGCCAAGACGGTGG 59.732 66.667 5.01 0.00 42.05 4.61
58 59 1.079127 CTGGTAGGCCAAGACGGTG 60.079 63.158 5.01 0.00 45.51 4.94
59 60 2.291043 CCTGGTAGGCCAAGACGGT 61.291 63.158 5.01 0.00 45.51 4.83
60 61 2.584608 CCTGGTAGGCCAAGACGG 59.415 66.667 5.01 0.00 45.51 4.79
69 70 0.815615 GATTTCGGCAGCCTGGTAGG 60.816 60.000 10.54 0.00 38.80 3.18
70 71 1.154205 CGATTTCGGCAGCCTGGTAG 61.154 60.000 10.54 0.00 35.37 3.18
71 72 1.153449 CGATTTCGGCAGCCTGGTA 60.153 57.895 10.54 0.00 35.37 3.25
72 73 2.436646 CGATTTCGGCAGCCTGGT 60.437 61.111 10.54 0.00 35.37 4.00
73 74 2.436646 ACGATTTCGGCAGCCTGG 60.437 61.111 10.54 0.00 44.95 4.45
74 75 1.577328 AACACGATTTCGGCAGCCTG 61.577 55.000 10.54 3.19 44.95 4.85
75 76 1.298859 GAACACGATTTCGGCAGCCT 61.299 55.000 10.54 0.00 44.95 4.58
76 77 1.134694 GAACACGATTTCGGCAGCC 59.865 57.895 0.00 0.00 44.95 4.85
77 78 0.452784 GTGAACACGATTTCGGCAGC 60.453 55.000 4.84 0.00 44.95 5.25
78 79 0.165944 GGTGAACACGATTTCGGCAG 59.834 55.000 4.84 0.00 44.95 4.85
79 80 0.533085 TGGTGAACACGATTTCGGCA 60.533 50.000 4.84 0.00 44.95 5.69
80 81 0.165944 CTGGTGAACACGATTTCGGC 59.834 55.000 4.84 0.00 44.95 5.54
81 82 0.165944 GCTGGTGAACACGATTTCGG 59.834 55.000 4.84 0.00 44.95 4.30
82 83 1.148310 AGCTGGTGAACACGATTTCG 58.852 50.000 0.00 0.00 46.33 3.46
83 84 2.095718 GGAAGCTGGTGAACACGATTTC 60.096 50.000 0.00 0.00 0.00 2.17
84 85 1.880027 GGAAGCTGGTGAACACGATTT 59.120 47.619 0.00 0.00 0.00 2.17
85 86 1.202758 TGGAAGCTGGTGAACACGATT 60.203 47.619 0.00 0.00 0.00 3.34
86 87 0.396435 TGGAAGCTGGTGAACACGAT 59.604 50.000 0.00 0.00 0.00 3.73
87 88 0.396435 ATGGAAGCTGGTGAACACGA 59.604 50.000 0.00 0.00 0.00 4.35
88 89 0.798776 GATGGAAGCTGGTGAACACG 59.201 55.000 0.00 0.00 0.00 4.49
89 90 0.798776 CGATGGAAGCTGGTGAACAC 59.201 55.000 0.00 0.00 0.00 3.32
90 91 0.396435 ACGATGGAAGCTGGTGAACA 59.604 50.000 0.00 0.00 0.00 3.18
91 92 0.798776 CACGATGGAAGCTGGTGAAC 59.201 55.000 0.00 0.00 0.00 3.18
92 93 0.684535 TCACGATGGAAGCTGGTGAA 59.315 50.000 0.00 0.00 34.94 3.18
93 94 0.247460 CTCACGATGGAAGCTGGTGA 59.753 55.000 0.00 0.00 36.33 4.02
94 95 0.036952 ACTCACGATGGAAGCTGGTG 60.037 55.000 0.00 0.00 0.00 4.17
95 96 0.247736 GACTCACGATGGAAGCTGGT 59.752 55.000 0.00 0.00 0.00 4.00
96 97 0.247460 TGACTCACGATGGAAGCTGG 59.753 55.000 0.00 0.00 0.00 4.85
97 98 1.931841 CATGACTCACGATGGAAGCTG 59.068 52.381 0.00 0.00 0.00 4.24
98 99 1.552337 ACATGACTCACGATGGAAGCT 59.448 47.619 0.00 0.00 0.00 3.74
99 100 1.662629 CACATGACTCACGATGGAAGC 59.337 52.381 0.00 0.00 0.00 3.86
100 101 2.669924 CACACATGACTCACGATGGAAG 59.330 50.000 0.00 0.00 0.00 3.46
101 102 2.037121 ACACACATGACTCACGATGGAA 59.963 45.455 0.00 0.00 0.00 3.53
102 103 1.618343 ACACACATGACTCACGATGGA 59.382 47.619 0.00 0.00 0.00 3.41
103 104 2.084610 ACACACATGACTCACGATGG 57.915 50.000 0.00 0.00 0.00 3.51
104 105 2.594214 CGTACACACATGACTCACGATG 59.406 50.000 0.00 0.00 0.00 3.84
105 106 2.486592 TCGTACACACATGACTCACGAT 59.513 45.455 0.00 0.00 32.57 3.73
106 107 1.874872 TCGTACACACATGACTCACGA 59.125 47.619 0.00 5.02 34.87 4.35
107 108 1.976728 GTCGTACACACATGACTCACG 59.023 52.381 0.00 2.54 32.67 4.35
108 109 2.287970 TGGTCGTACACACATGACTCAC 60.288 50.000 0.00 0.00 35.25 3.51
109 110 1.957877 TGGTCGTACACACATGACTCA 59.042 47.619 0.00 0.00 35.25 3.41
110 111 2.325761 GTGGTCGTACACACATGACTC 58.674 52.381 0.00 0.00 40.99 3.36
111 112 1.335597 CGTGGTCGTACACACATGACT 60.336 52.381 0.00 0.00 41.38 3.41
112 113 1.057636 CGTGGTCGTACACACATGAC 58.942 55.000 0.00 1.52 41.38 3.06
113 114 3.482765 CGTGGTCGTACACACATGA 57.517 52.632 0.00 0.00 41.38 3.07
124 125 2.317609 CCCAGCAAGAACGTGGTCG 61.318 63.158 0.00 0.00 43.34 4.79
125 126 2.617274 GCCCAGCAAGAACGTGGTC 61.617 63.158 0.00 0.00 0.00 4.02
126 127 1.764571 TAGCCCAGCAAGAACGTGGT 61.765 55.000 0.00 0.00 0.00 4.16
127 128 1.003839 TAGCCCAGCAAGAACGTGG 60.004 57.895 0.00 0.00 0.00 4.94
128 129 0.037326 TCTAGCCCAGCAAGAACGTG 60.037 55.000 0.00 0.00 0.00 4.49
129 130 0.247736 CTCTAGCCCAGCAAGAACGT 59.752 55.000 0.00 0.00 0.00 3.99
130 131 0.460987 CCTCTAGCCCAGCAAGAACG 60.461 60.000 0.00 0.00 0.00 3.95
131 132 0.746204 GCCTCTAGCCCAGCAAGAAC 60.746 60.000 0.00 0.00 34.35 3.01
132 133 1.200760 TGCCTCTAGCCCAGCAAGAA 61.201 55.000 0.00 0.00 42.71 2.52
133 134 1.200760 TTGCCTCTAGCCCAGCAAGA 61.201 55.000 4.96 0.00 40.13 3.02
134 135 1.300963 TTGCCTCTAGCCCAGCAAG 59.699 57.895 4.96 0.00 40.13 4.01
135 136 3.494506 TTGCCTCTAGCCCAGCAA 58.505 55.556 4.96 4.96 42.60 3.91
136 137 1.141657 CTAATTGCCTCTAGCCCAGCA 59.858 52.381 0.00 0.00 42.71 4.41
137 138 1.417890 TCTAATTGCCTCTAGCCCAGC 59.582 52.381 0.00 0.00 42.71 4.85
138 139 2.224402 GGTCTAATTGCCTCTAGCCCAG 60.224 54.545 0.00 0.00 42.71 4.45
139 140 1.768870 GGTCTAATTGCCTCTAGCCCA 59.231 52.381 0.00 0.00 42.71 5.36
140 141 1.072489 GGGTCTAATTGCCTCTAGCCC 59.928 57.143 0.00 0.00 42.71 5.19
141 142 2.037902 GAGGGTCTAATTGCCTCTAGCC 59.962 54.545 0.00 0.00 42.71 3.93
142 143 2.037902 GGAGGGTCTAATTGCCTCTAGC 59.962 54.545 0.00 0.00 44.14 3.42
143 144 3.582164 AGGAGGGTCTAATTGCCTCTAG 58.418 50.000 0.00 0.00 0.00 2.43
144 145 3.708236 AGGAGGGTCTAATTGCCTCTA 57.292 47.619 0.00 0.00 0.00 2.43
145 146 2.577772 AGGAGGGTCTAATTGCCTCT 57.422 50.000 0.00 0.00 0.00 3.69
146 147 4.348168 TGATTAGGAGGGTCTAATTGCCTC 59.652 45.833 0.00 0.00 39.31 4.70
147 148 4.307259 TGATTAGGAGGGTCTAATTGCCT 58.693 43.478 0.00 0.00 39.31 4.75
148 149 4.706842 TGATTAGGAGGGTCTAATTGCC 57.293 45.455 0.00 0.00 39.31 4.52
149 150 5.760743 GTCTTGATTAGGAGGGTCTAATTGC 59.239 44.000 0.00 0.00 39.31 3.56
150 151 7.130681 AGTCTTGATTAGGAGGGTCTAATTG 57.869 40.000 0.00 0.00 39.31 2.32
151 152 7.569240 CAAGTCTTGATTAGGAGGGTCTAATT 58.431 38.462 6.76 0.00 39.31 1.40
152 153 6.408662 GCAAGTCTTGATTAGGAGGGTCTAAT 60.409 42.308 16.99 0.00 41.20 1.73
153 154 5.104900 GCAAGTCTTGATTAGGAGGGTCTAA 60.105 44.000 16.99 0.00 34.23 2.10
154 155 4.406003 GCAAGTCTTGATTAGGAGGGTCTA 59.594 45.833 16.99 0.00 0.00 2.59
155 156 3.198853 GCAAGTCTTGATTAGGAGGGTCT 59.801 47.826 16.99 0.00 0.00 3.85
156 157 3.198853 AGCAAGTCTTGATTAGGAGGGTC 59.801 47.826 16.99 0.00 0.00 4.46
157 158 3.185455 AGCAAGTCTTGATTAGGAGGGT 58.815 45.455 16.99 0.00 0.00 4.34
158 159 3.922171 AGCAAGTCTTGATTAGGAGGG 57.078 47.619 16.99 0.00 0.00 4.30
159 160 5.248640 TCAAAGCAAGTCTTGATTAGGAGG 58.751 41.667 16.04 5.03 38.50 4.30
160 161 6.169094 TCTCAAAGCAAGTCTTGATTAGGAG 58.831 40.000 24.92 24.92 38.50 3.69
161 162 6.114187 TCTCAAAGCAAGTCTTGATTAGGA 57.886 37.500 16.04 14.73 38.50 2.94
162 163 6.183360 CCATCTCAAAGCAAGTCTTGATTAGG 60.183 42.308 16.04 11.59 38.50 2.69
163 164 6.596888 TCCATCTCAAAGCAAGTCTTGATTAG 59.403 38.462 16.04 11.00 38.50 1.73
164 165 6.475504 TCCATCTCAAAGCAAGTCTTGATTA 58.524 36.000 16.04 1.58 38.50 1.75
165 166 5.319453 TCCATCTCAAAGCAAGTCTTGATT 58.681 37.500 16.99 13.60 41.72 2.57
166 167 4.914983 TCCATCTCAAAGCAAGTCTTGAT 58.085 39.130 16.99 7.21 34.67 2.57
167 168 4.356405 TCCATCTCAAAGCAAGTCTTGA 57.644 40.909 16.99 0.00 34.67 3.02
168 169 4.082895 CCTTCCATCTCAAAGCAAGTCTTG 60.083 45.833 8.31 8.31 34.67 3.02
169 170 4.077822 CCTTCCATCTCAAAGCAAGTCTT 58.922 43.478 0.00 0.00 36.34 3.01
170 171 3.073650 ACCTTCCATCTCAAAGCAAGTCT 59.926 43.478 0.00 0.00 0.00 3.24
171 172 3.190118 CACCTTCCATCTCAAAGCAAGTC 59.810 47.826 0.00 0.00 0.00 3.01
172 173 3.152341 CACCTTCCATCTCAAAGCAAGT 58.848 45.455 0.00 0.00 0.00 3.16
173 174 2.094854 GCACCTTCCATCTCAAAGCAAG 60.095 50.000 0.00 0.00 0.00 4.01
174 175 1.888512 GCACCTTCCATCTCAAAGCAA 59.111 47.619 0.00 0.00 0.00 3.91
175 176 1.538047 GCACCTTCCATCTCAAAGCA 58.462 50.000 0.00 0.00 0.00 3.91
176 177 0.813821 GGCACCTTCCATCTCAAAGC 59.186 55.000 0.00 0.00 0.00 3.51
177 178 2.503895 AGGCACCTTCCATCTCAAAG 57.496 50.000 0.00 0.00 0.00 2.77
178 179 2.642311 TGTAGGCACCTTCCATCTCAAA 59.358 45.455 0.00 0.00 0.00 2.69
179 180 2.265367 TGTAGGCACCTTCCATCTCAA 58.735 47.619 0.00 0.00 0.00 3.02
180 181 1.951209 TGTAGGCACCTTCCATCTCA 58.049 50.000 0.00 0.00 0.00 3.27
181 182 2.435805 TGATGTAGGCACCTTCCATCTC 59.564 50.000 20.68 6.64 35.78 2.75
182 183 2.437281 CTGATGTAGGCACCTTCCATCT 59.563 50.000 20.68 0.00 35.78 2.90
183 184 2.843701 CTGATGTAGGCACCTTCCATC 58.156 52.381 16.42 16.42 35.55 3.51
184 185 1.133976 GCTGATGTAGGCACCTTCCAT 60.134 52.381 0.00 0.00 0.00 3.41
185 186 0.253044 GCTGATGTAGGCACCTTCCA 59.747 55.000 0.00 0.00 0.00 3.53
186 187 0.543749 AGCTGATGTAGGCACCTTCC 59.456 55.000 0.00 0.00 0.00 3.46
187 188 2.483889 GGTAGCTGATGTAGGCACCTTC 60.484 54.545 0.00 0.00 31.74 3.46
188 189 1.486726 GGTAGCTGATGTAGGCACCTT 59.513 52.381 0.00 0.00 31.74 3.50
189 190 1.123928 GGTAGCTGATGTAGGCACCT 58.876 55.000 0.00 0.00 31.74 4.00
190 191 1.069358 GAGGTAGCTGATGTAGGCACC 59.931 57.143 0.00 0.00 33.29 5.01
191 192 1.757118 TGAGGTAGCTGATGTAGGCAC 59.243 52.381 0.00 0.00 0.00 5.01
192 193 2.159179 TGAGGTAGCTGATGTAGGCA 57.841 50.000 0.00 0.00 0.00 4.75
193 194 2.352225 CGATGAGGTAGCTGATGTAGGC 60.352 54.545 0.00 0.00 0.00 3.93
194 195 2.352225 GCGATGAGGTAGCTGATGTAGG 60.352 54.545 0.00 0.00 0.00 3.18
195 196 2.352225 GGCGATGAGGTAGCTGATGTAG 60.352 54.545 0.00 0.00 0.00 2.74
196 197 1.613925 GGCGATGAGGTAGCTGATGTA 59.386 52.381 0.00 0.00 0.00 2.29
197 198 0.390860 GGCGATGAGGTAGCTGATGT 59.609 55.000 0.00 0.00 0.00 3.06
198 199 0.678395 AGGCGATGAGGTAGCTGATG 59.322 55.000 0.00 0.00 0.00 3.07
199 200 2.166829 CTAGGCGATGAGGTAGCTGAT 58.833 52.381 0.00 0.00 0.00 2.90
200 201 1.610363 CTAGGCGATGAGGTAGCTGA 58.390 55.000 0.00 0.00 0.00 4.26
201 202 0.038709 GCTAGGCGATGAGGTAGCTG 60.039 60.000 0.00 0.00 35.91 4.24
202 203 0.178975 AGCTAGGCGATGAGGTAGCT 60.179 55.000 0.00 0.00 42.71 3.32
203 204 0.242555 GAGCTAGGCGATGAGGTAGC 59.757 60.000 0.00 0.00 38.56 3.58
204 205 1.268352 GTGAGCTAGGCGATGAGGTAG 59.732 57.143 0.00 0.00 0.00 3.18
205 206 1.319541 GTGAGCTAGGCGATGAGGTA 58.680 55.000 0.00 0.00 0.00 3.08
206 207 1.395826 GGTGAGCTAGGCGATGAGGT 61.396 60.000 0.00 0.00 0.00 3.85
207 208 1.365633 GGTGAGCTAGGCGATGAGG 59.634 63.158 0.00 0.00 0.00 3.86
208 209 0.461548 TTGGTGAGCTAGGCGATGAG 59.538 55.000 0.00 0.00 0.00 2.90
209 210 0.461548 CTTGGTGAGCTAGGCGATGA 59.538 55.000 0.00 0.00 0.00 2.92
210 211 0.461548 TCTTGGTGAGCTAGGCGATG 59.538 55.000 0.00 0.00 0.00 3.84
211 212 1.069823 CATCTTGGTGAGCTAGGCGAT 59.930 52.381 0.00 0.00 0.00 4.58
212 213 0.461548 CATCTTGGTGAGCTAGGCGA 59.538 55.000 0.00 0.00 0.00 5.54
213 214 0.531532 CCATCTTGGTGAGCTAGGCG 60.532 60.000 0.00 0.00 31.35 5.52
214 215 3.393472 CCATCTTGGTGAGCTAGGC 57.607 57.895 0.00 0.00 31.35 3.93
224 225 2.460330 GTGACGAGCACCATCTTGG 58.540 57.895 0.00 0.00 45.02 3.61
238 239 2.150397 GGTATGTCTATGCCGGTGAC 57.850 55.000 1.90 7.65 29.12 3.67
244 245 1.000955 CCACTCCGGTATGTCTATGCC 59.999 57.143 0.00 0.00 35.88 4.40
245 246 1.605712 GCCACTCCGGTATGTCTATGC 60.606 57.143 0.00 0.00 36.97 3.14
246 247 1.000955 GGCCACTCCGGTATGTCTATG 59.999 57.143 0.00 0.00 36.97 2.23
247 248 1.339097 GGCCACTCCGGTATGTCTAT 58.661 55.000 0.00 0.00 36.97 1.98
248 249 2.816746 GGCCACTCCGGTATGTCTA 58.183 57.895 0.00 0.00 36.97 2.59
249 250 3.630289 GGCCACTCCGGTATGTCT 58.370 61.111 0.00 0.00 36.97 3.41
258 259 1.819632 CTTACCATGCGGCCACTCC 60.820 63.158 2.24 0.00 34.57 3.85
259 260 2.472909 GCTTACCATGCGGCCACTC 61.473 63.158 2.24 0.00 34.57 3.51
260 261 2.438434 GCTTACCATGCGGCCACT 60.438 61.111 2.24 0.00 34.57 4.00
261 262 2.438434 AGCTTACCATGCGGCCAC 60.438 61.111 2.24 0.00 34.57 5.01
262 263 2.124736 GAGCTTACCATGCGGCCA 60.125 61.111 2.24 0.00 34.57 5.36
263 264 3.272334 CGAGCTTACCATGCGGCC 61.272 66.667 0.00 0.00 34.57 6.13
264 265 2.511600 ACGAGCTTACCATGCGGC 60.512 61.111 0.00 0.00 34.57 6.53
265 266 0.530650 ATCACGAGCTTACCATGCGG 60.531 55.000 0.00 0.00 38.77 5.69
266 267 0.855349 GATCACGAGCTTACCATGCG 59.145 55.000 0.00 0.00 35.28 4.73
267 268 2.131183 GAGATCACGAGCTTACCATGC 58.869 52.381 0.00 0.00 0.00 4.06
268 269 3.379240 CAGAGATCACGAGCTTACCATG 58.621 50.000 0.00 0.00 0.00 3.66
269 270 2.363680 CCAGAGATCACGAGCTTACCAT 59.636 50.000 0.00 0.00 0.00 3.55
270 271 1.751351 CCAGAGATCACGAGCTTACCA 59.249 52.381 0.00 0.00 0.00 3.25
271 272 1.067821 CCCAGAGATCACGAGCTTACC 59.932 57.143 0.00 0.00 0.00 2.85
272 273 2.025155 TCCCAGAGATCACGAGCTTAC 58.975 52.381 0.00 0.00 0.00 2.34
273 274 2.437085 TCCCAGAGATCACGAGCTTA 57.563 50.000 0.00 0.00 0.00 3.09
274 275 1.480137 CTTCCCAGAGATCACGAGCTT 59.520 52.381 0.00 0.00 0.00 3.74
275 276 1.110442 CTTCCCAGAGATCACGAGCT 58.890 55.000 0.00 0.00 0.00 4.09
276 277 1.107114 TCTTCCCAGAGATCACGAGC 58.893 55.000 0.00 0.00 0.00 5.03
286 287 4.385865 GGAGATAGTCACTCTCTTCCCAGA 60.386 50.000 0.00 0.00 39.30 3.86
287 288 3.888930 GGAGATAGTCACTCTCTTCCCAG 59.111 52.174 0.00 0.00 39.30 4.45
288 289 3.529734 AGGAGATAGTCACTCTCTTCCCA 59.470 47.826 0.00 0.00 39.30 4.37
289 290 4.178956 AGGAGATAGTCACTCTCTTCCC 57.821 50.000 0.00 0.00 39.30 3.97
290 291 5.445964 AGAAGGAGATAGTCACTCTCTTCC 58.554 45.833 3.39 0.00 39.51 3.46
291 292 6.183360 CCAAGAAGGAGATAGTCACTCTCTTC 60.183 46.154 0.85 0.85 41.22 2.87
292 293 5.656416 CCAAGAAGGAGATAGTCACTCTCTT 59.344 44.000 0.00 0.00 41.22 2.85
293 294 5.044476 TCCAAGAAGGAGATAGTCACTCTCT 60.044 44.000 0.00 0.00 43.07 3.10
294 295 5.197451 TCCAAGAAGGAGATAGTCACTCTC 58.803 45.833 0.00 0.00 43.07 3.20
295 296 5.199982 TCCAAGAAGGAGATAGTCACTCT 57.800 43.478 0.00 0.00 43.07 3.24
307 308 1.289066 CGACGTGCTCCAAGAAGGA 59.711 57.895 0.00 0.00 46.75 3.36
308 309 1.006102 ACGACGTGCTCCAAGAAGG 60.006 57.895 0.00 0.00 39.47 3.46
309 310 0.318699 TGACGACGTGCTCCAAGAAG 60.319 55.000 4.58 0.00 0.00 2.85
310 311 0.317160 ATGACGACGTGCTCCAAGAA 59.683 50.000 4.58 0.00 0.00 2.52
311 312 1.170442 TATGACGACGTGCTCCAAGA 58.830 50.000 4.58 0.00 0.00 3.02
312 313 1.654105 GTTATGACGACGTGCTCCAAG 59.346 52.381 4.58 0.00 0.00 3.61
313 314 1.271379 AGTTATGACGACGTGCTCCAA 59.729 47.619 4.58 0.00 0.00 3.53
314 315 0.885879 AGTTATGACGACGTGCTCCA 59.114 50.000 4.58 0.00 0.00 3.86
315 316 2.838386 TAGTTATGACGACGTGCTCC 57.162 50.000 4.58 0.00 0.00 4.70
316 317 4.103357 ACAATAGTTATGACGACGTGCTC 58.897 43.478 4.58 0.00 0.00 4.26
317 318 4.106029 ACAATAGTTATGACGACGTGCT 57.894 40.909 4.58 0.00 0.00 4.40
318 319 5.170981 GTCTACAATAGTTATGACGACGTGC 59.829 44.000 4.58 0.00 0.00 5.34
319 320 5.391721 CGTCTACAATAGTTATGACGACGTG 59.608 44.000 4.58 0.00 42.07 4.49
320 321 5.291858 TCGTCTACAATAGTTATGACGACGT 59.708 40.000 0.00 0.00 42.62 4.34
321 322 5.731278 TCGTCTACAATAGTTATGACGACG 58.269 41.667 11.16 0.00 42.62 5.12
322 323 6.941802 TCTCGTCTACAATAGTTATGACGAC 58.058 40.000 11.16 0.00 42.62 4.34
323 324 6.202379 CCTCTCGTCTACAATAGTTATGACGA 59.798 42.308 13.84 13.84 43.83 4.20
324 325 6.202379 TCCTCTCGTCTACAATAGTTATGACG 59.798 42.308 0.00 0.00 41.50 4.35
325 326 7.012138 TGTCCTCTCGTCTACAATAGTTATGAC 59.988 40.741 0.00 0.00 0.00 3.06
326 327 7.052248 TGTCCTCTCGTCTACAATAGTTATGA 58.948 38.462 0.00 0.00 0.00 2.15
327 328 7.260558 TGTCCTCTCGTCTACAATAGTTATG 57.739 40.000 0.00 0.00 0.00 1.90
328 329 9.570468 TTATGTCCTCTCGTCTACAATAGTTAT 57.430 33.333 0.00 0.00 0.00 1.89
329 330 8.969260 TTATGTCCTCTCGTCTACAATAGTTA 57.031 34.615 0.00 0.00 0.00 2.24
330 331 7.468906 GCTTATGTCCTCTCGTCTACAATAGTT 60.469 40.741 0.00 0.00 0.00 2.24
331 332 6.016943 GCTTATGTCCTCTCGTCTACAATAGT 60.017 42.308 0.00 0.00 0.00 2.12
332 333 6.017026 TGCTTATGTCCTCTCGTCTACAATAG 60.017 42.308 0.00 0.00 0.00 1.73
333 334 5.826208 TGCTTATGTCCTCTCGTCTACAATA 59.174 40.000 0.00 0.00 0.00 1.90
334 335 4.645136 TGCTTATGTCCTCTCGTCTACAAT 59.355 41.667 0.00 0.00 0.00 2.71
335 336 4.014406 TGCTTATGTCCTCTCGTCTACAA 58.986 43.478 0.00 0.00 0.00 2.41
336 337 3.617284 TGCTTATGTCCTCTCGTCTACA 58.383 45.455 0.00 0.00 0.00 2.74
337 338 3.628487 ACTGCTTATGTCCTCTCGTCTAC 59.372 47.826 0.00 0.00 0.00 2.59
338 339 3.628032 CACTGCTTATGTCCTCTCGTCTA 59.372 47.826 0.00 0.00 0.00 2.59
339 340 2.425312 CACTGCTTATGTCCTCTCGTCT 59.575 50.000 0.00 0.00 0.00 4.18
340 341 2.480416 CCACTGCTTATGTCCTCTCGTC 60.480 54.545 0.00 0.00 0.00 4.20
341 342 1.478510 CCACTGCTTATGTCCTCTCGT 59.521 52.381 0.00 0.00 0.00 4.18
342 343 1.804372 GCCACTGCTTATGTCCTCTCG 60.804 57.143 0.00 0.00 33.53 4.04
343 344 1.804372 CGCCACTGCTTATGTCCTCTC 60.804 57.143 0.00 0.00 34.43 3.20
344 345 0.176680 CGCCACTGCTTATGTCCTCT 59.823 55.000 0.00 0.00 34.43 3.69
345 346 0.811616 CCGCCACTGCTTATGTCCTC 60.812 60.000 0.00 0.00 34.43 3.71
346 347 1.221840 CCGCCACTGCTTATGTCCT 59.778 57.895 0.00 0.00 34.43 3.85
347 348 1.090052 GTCCGCCACTGCTTATGTCC 61.090 60.000 0.00 0.00 34.43 4.02
348 349 1.421410 CGTCCGCCACTGCTTATGTC 61.421 60.000 0.00 0.00 34.43 3.06
349 350 1.447838 CGTCCGCCACTGCTTATGT 60.448 57.895 0.00 0.00 34.43 2.29
350 351 0.179121 TACGTCCGCCACTGCTTATG 60.179 55.000 0.00 0.00 34.43 1.90
351 352 0.179119 GTACGTCCGCCACTGCTTAT 60.179 55.000 0.00 0.00 34.43 1.73
352 353 1.213537 GTACGTCCGCCACTGCTTA 59.786 57.895 0.00 0.00 34.43 3.09
353 354 2.048503 GTACGTCCGCCACTGCTT 60.049 61.111 0.00 0.00 34.43 3.91
354 355 3.282745 CTGTACGTCCGCCACTGCT 62.283 63.158 0.00 0.00 34.43 4.24
398 399 1.004745 GGCTGTCTCAAAATCCCAGGA 59.995 52.381 0.00 0.00 0.00 3.86
473 482 3.314331 CCTGGACTGGGCGTCTGT 61.314 66.667 0.00 0.00 42.44 3.41
476 485 2.047179 GAACCTGGACTGGGCGTC 60.047 66.667 0.00 0.00 42.07 5.19
537 554 3.953775 ACGGGGTCAAGCACTGGG 61.954 66.667 0.00 0.00 0.00 4.45
554 571 2.930019 CTCACTGCCTGGGGGTCA 60.930 66.667 0.00 0.00 34.45 4.02
626 667 3.435186 GAGTTTCCTGGCGGCAGC 61.435 66.667 31.99 18.71 44.18 5.25
628 669 4.697756 CGGAGTTTCCTGGCGGCA 62.698 66.667 12.58 12.58 33.30 5.69
631 672 4.394712 AGGCGGAGTTTCCTGGCG 62.395 66.667 0.00 0.00 39.32 5.69
632 673 2.436824 GAGGCGGAGTTTCCTGGC 60.437 66.667 0.00 0.00 36.45 4.85
633 674 1.219393 GAGAGGCGGAGTTTCCTGG 59.781 63.158 0.00 0.00 33.30 4.45
634 675 1.219393 GGAGAGGCGGAGTTTCCTG 59.781 63.158 0.00 0.00 33.30 3.86
635 676 0.973496 GAGGAGAGGCGGAGTTTCCT 60.973 60.000 0.00 0.00 40.85 3.36
636 677 1.518302 GAGGAGAGGCGGAGTTTCC 59.482 63.158 0.00 0.00 0.00 3.13
637 678 1.518302 GGAGGAGAGGCGGAGTTTC 59.482 63.158 0.00 0.00 0.00 2.78
638 679 2.352032 CGGAGGAGAGGCGGAGTTT 61.352 63.158 0.00 0.00 0.00 2.66
639 680 2.756283 CGGAGGAGAGGCGGAGTT 60.756 66.667 0.00 0.00 0.00 3.01
880 1018 6.591448 GCAAACCCTAAATCAGAAATTTGAGG 59.409 38.462 0.00 0.00 0.00 3.86
912 1052 4.096681 TCATGTAGTGGATAGCATAGGGG 58.903 47.826 0.00 0.00 0.00 4.79
916 1056 6.976934 TCTGTTCATGTAGTGGATAGCATA 57.023 37.500 0.00 0.00 0.00 3.14
1048 1196 4.333926 CGCCTTCTTCTTCTTCCCTATTTG 59.666 45.833 0.00 0.00 0.00 2.32
1120 1268 3.932710 TGCTCTTCAATCACAATCGGTAC 59.067 43.478 0.00 0.00 0.00 3.34
1122 1270 3.057969 TGCTCTTCAATCACAATCGGT 57.942 42.857 0.00 0.00 0.00 4.69
1208 1357 1.593196 ATCATAAACCGGTGGCGATG 58.407 50.000 8.52 9.87 0.00 3.84
1232 1381 5.193527 TCCCAAGGATCATGTTTAAGATGGA 59.806 40.000 2.27 0.00 0.00 3.41
1233 1382 5.448654 TCCCAAGGATCATGTTTAAGATGG 58.551 41.667 2.27 0.00 0.00 3.51
1326 1475 6.663093 AGTTATGTGCATAAGGTTTGAATGGA 59.337 34.615 5.01 0.00 34.27 3.41
1594 1748 7.601130 CCGATTAATAGTCCACCGATAAAATCA 59.399 37.037 0.00 0.00 0.00 2.57
1910 2085 3.733443 ACCTTGTTTGAACATTCCAGC 57.267 42.857 0.00 0.00 38.95 4.85
1912 2087 6.936279 TGTTTAACCTTGTTTGAACATTCCA 58.064 32.000 0.00 0.00 38.95 3.53
1987 2162 1.593196 GTGTTTGGCTGTGTGCTAGA 58.407 50.000 0.00 0.00 42.39 2.43
2042 2217 2.872858 GGACTCTTGGTTGTGAGTTGTC 59.127 50.000 0.00 0.00 42.79 3.18
2058 2233 6.403746 GCAGCCTAGAACTTTATTTTGGACTC 60.404 42.308 0.00 0.00 0.00 3.36
2203 2378 4.040829 TGACACTATGCCTATCAATGAGGG 59.959 45.833 1.50 1.50 34.35 4.30
2219 2394 6.753744 CGTTTCTGATGATGAATCTGACACTA 59.246 38.462 8.75 0.00 41.44 2.74
2288 2463 4.511527 AGATGACAGTGCAATAGAACCTG 58.488 43.478 0.00 0.00 0.00 4.00
2292 2467 4.183865 CCGAAGATGACAGTGCAATAGAA 58.816 43.478 0.00 0.00 0.00 2.10
2295 2470 3.610040 ACCGAAGATGACAGTGCAATA 57.390 42.857 0.00 0.00 0.00 1.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.