Multiple sequence alignment - TraesCS6D01G028900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G028900 chr6D 100.000 8300 0 0 1 8300 11108154 11116453 0.000000e+00 15328.0
1 TraesCS6D01G028900 chr6D 88.193 1931 205 10 5236 7162 10921360 10923271 0.000000e+00 2281.0
2 TraesCS6D01G028900 chr6D 85.826 1926 262 8 5238 7156 11046471 11048392 0.000000e+00 2034.0
3 TraesCS6D01G028900 chr6D 84.623 2042 249 47 5149 7161 11058429 11060434 0.000000e+00 1971.0
4 TraesCS6D01G028900 chr6D 83.916 1517 215 22 861 2358 12495154 12493648 0.000000e+00 1423.0
5 TraesCS6D01G028900 chr6D 88.363 1014 103 10 2463 3470 11056753 11057757 0.000000e+00 1205.0
6 TraesCS6D01G028900 chr6D 83.122 1339 197 14 998 2333 10938358 10939670 0.000000e+00 1194.0
7 TraesCS6D01G028900 chr6D 81.269 1308 189 40 2459 3758 10918447 10919706 0.000000e+00 1007.0
8 TraesCS6D01G028900 chr6D 84.032 1002 148 7 2459 3457 11086796 11087788 0.000000e+00 953.0
9 TraesCS6D01G028900 chr6D 89.873 158 11 5 7426 7581 10923455 10923609 1.830000e-46 198.0
10 TraesCS6D01G028900 chr6D 78.241 216 33 8 3537 3750 12492228 12492025 8.750000e-25 126.0
11 TraesCS6D01G028900 chr6D 90.698 86 8 0 7225 7310 10923295 10923380 1.890000e-21 115.0
12 TraesCS6D01G028900 chr6B 91.874 4713 288 41 2502 7156 20823485 20828160 0.000000e+00 6493.0
13 TraesCS6D01G028900 chr6B 86.306 2753 282 43 859 3574 21064897 21067591 0.000000e+00 2907.0
14 TraesCS6D01G028900 chr6B 89.531 1939 196 6 5266 7202 21043637 21045570 0.000000e+00 2449.0
15 TraesCS6D01G028900 chr6B 91.175 1779 133 6 5 1761 20820816 20822592 0.000000e+00 2394.0
16 TraesCS6D01G028900 chr6B 85.947 2270 252 36 4921 7156 21068618 21070854 0.000000e+00 2362.0
17 TraesCS6D01G028900 chr6B 87.475 2020 235 12 5149 7156 20976661 20978674 0.000000e+00 2313.0
18 TraesCS6D01G028900 chr6B 87.355 1977 237 8 5234 7202 21004316 21006287 0.000000e+00 2254.0
19 TraesCS6D01G028900 chr6B 87.532 1925 232 6 5238 7156 20923179 20925101 0.000000e+00 2218.0
20 TraesCS6D01G028900 chr6B 87.134 1912 226 12 5255 7159 20955738 20957636 0.000000e+00 2150.0
21 TraesCS6D01G028900 chr6B 86.491 1932 246 14 5234 7156 20783807 20785732 0.000000e+00 2108.0
22 TraesCS6D01G028900 chr6B 84.306 1765 253 15 802 2556 20973388 20975138 0.000000e+00 1703.0
23 TraesCS6D01G028900 chr6B 90.035 1134 108 3 5216 6345 20694522 20695654 0.000000e+00 1463.0
24 TraesCS6D01G028900 chr6B 85.591 1395 180 19 958 2342 20779372 20780755 0.000000e+00 1443.0
25 TraesCS6D01G028900 chr6B 85.078 1347 188 12 1001 2340 20951000 20952340 0.000000e+00 1362.0
26 TraesCS6D01G028900 chr6B 84.819 1324 183 13 802 2115 20752824 20754139 0.000000e+00 1315.0
27 TraesCS6D01G028900 chr6B 85.068 1172 173 2 997 2167 20690038 20691208 0.000000e+00 1194.0
28 TraesCS6D01G028900 chr6B 84.932 1168 172 4 997 2162 20756356 20757521 0.000000e+00 1179.0
29 TraesCS6D01G028900 chr6B 85.885 1091 124 10 679 1761 23173846 23172778 0.000000e+00 1134.0
30 TraesCS6D01G028900 chr6B 86.861 959 108 10 2624 3567 20975147 20976102 0.000000e+00 1057.0
31 TraesCS6D01G028900 chr6B 88.727 825 66 6 1682 2503 20822592 20823392 0.000000e+00 983.0
32 TraesCS6D01G028900 chr6B 84.763 991 136 12 2478 3462 20952429 20953410 0.000000e+00 979.0
33 TraesCS6D01G028900 chr6B 83.865 1004 145 11 2456 3457 21001302 21002290 0.000000e+00 941.0
34 TraesCS6D01G028900 chr6B 83.552 991 157 3 2466 3456 23171962 23170978 0.000000e+00 922.0
35 TraesCS6D01G028900 chr6B 90.489 368 21 7 7940 8300 21047079 21047439 2.710000e-129 473.0
36 TraesCS6D01G028900 chr6B 79.265 381 50 19 7202 7581 21006245 21006597 1.080000e-58 239.0
37 TraesCS6D01G028900 chr6B 90.625 64 5 1 2391 2454 20920782 20920844 5.340000e-12 84.2
38 TraesCS6D01G028900 chr6B 93.617 47 3 0 7670 7716 21006658 21006704 4.160000e-08 71.3
39 TraesCS6D01G028900 chr6B 92.683 41 3 0 2391 2431 20691630 20691670 9.000000e-05 60.2
40 TraesCS6D01G028900 chr6B 92.683 41 3 0 2391 2431 20757948 20757988 9.000000e-05 60.2
41 TraesCS6D01G028900 chr6A 88.861 1966 211 6 5238 7202 12410371 12412329 0.000000e+00 2410.0
42 TraesCS6D01G028900 chr6A 84.266 286 28 11 7202 7480 12412287 12412562 6.390000e-66 263.0
43 TraesCS6D01G028900 chr6A 96.774 31 1 0 3629 3659 12000349 12000319 1.500000e-02 52.8
44 TraesCS6D01G028900 chr1B 81.481 216 34 5 3828 4040 513465107 513464895 1.110000e-38 172.0
45 TraesCS6D01G028900 chr5B 93.878 49 3 0 4011 4059 710203415 710203463 3.210000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G028900 chr6D 11108154 11116453 8299 False 15328.000000 15328 100.000000 1 8300 1 chr6D.!!$F4 8299
1 TraesCS6D01G028900 chr6D 11046471 11048392 1921 False 2034.000000 2034 85.826000 5238 7156 1 chr6D.!!$F2 1918
2 TraesCS6D01G028900 chr6D 11056753 11060434 3681 False 1588.000000 1971 86.493000 2463 7161 2 chr6D.!!$F6 4698
3 TraesCS6D01G028900 chr6D 10938358 10939670 1312 False 1194.000000 1194 83.122000 998 2333 1 chr6D.!!$F1 1335
4 TraesCS6D01G028900 chr6D 11086796 11087788 992 False 953.000000 953 84.032000 2459 3457 1 chr6D.!!$F3 998
5 TraesCS6D01G028900 chr6D 10918447 10923609 5162 False 900.250000 2281 87.508250 2459 7581 4 chr6D.!!$F5 5122
6 TraesCS6D01G028900 chr6D 12492025 12495154 3129 True 774.500000 1423 81.078500 861 3750 2 chr6D.!!$R1 2889
7 TraesCS6D01G028900 chr6B 20820816 20828160 7344 False 3290.000000 6493 90.592000 5 7156 3 chr6B.!!$F4 7151
8 TraesCS6D01G028900 chr6B 21064897 21070854 5957 False 2634.500000 2907 86.126500 859 7156 2 chr6B.!!$F10 6297
9 TraesCS6D01G028900 chr6B 20779372 20785732 6360 False 1775.500000 2108 86.041000 958 7156 2 chr6B.!!$F3 6198
10 TraesCS6D01G028900 chr6B 20973388 20978674 5286 False 1691.000000 2313 86.214000 802 7156 3 chr6B.!!$F7 6354
11 TraesCS6D01G028900 chr6B 20951000 20957636 6636 False 1497.000000 2150 85.658333 1001 7159 3 chr6B.!!$F6 6158
12 TraesCS6D01G028900 chr6B 21043637 21047439 3802 False 1461.000000 2449 90.010000 5266 8300 2 chr6B.!!$F9 3034
13 TraesCS6D01G028900 chr6B 20920782 20925101 4319 False 1151.100000 2218 89.078500 2391 7156 2 chr6B.!!$F5 4765
14 TraesCS6D01G028900 chr6B 23170978 23173846 2868 True 1028.000000 1134 84.718500 679 3456 2 chr6B.!!$R1 2777
15 TraesCS6D01G028900 chr6B 20690038 20695654 5616 False 905.733333 1463 89.262000 997 6345 3 chr6B.!!$F1 5348
16 TraesCS6D01G028900 chr6B 21001302 21006704 5402 False 876.325000 2254 86.025500 2456 7716 4 chr6B.!!$F8 5260
17 TraesCS6D01G028900 chr6B 20752824 20757988 5164 False 851.400000 1315 87.478000 802 2431 3 chr6B.!!$F2 1629
18 TraesCS6D01G028900 chr6A 12410371 12412562 2191 False 1336.500000 2410 86.563500 5238 7480 2 chr6A.!!$F1 2242

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
529 549 0.790814 GCTGTACTCTTGTGGCGAAC 59.209 55.000 0.00 0.0 0.00 3.95 F
1486 4859 0.537143 TGGCATCAACGAAGCAAGGT 60.537 50.000 0.00 0.0 0.00 3.50 F
2853 6695 0.035881 ACACTGACACTGGCTGATGG 59.964 55.000 0.00 0.0 0.00 3.51 F
3791 8019 0.035056 AGACCTGTGCATGGTTAGCC 60.035 55.000 14.27 3.7 38.03 3.93 F
4108 8362 0.031716 TCTGGGTGCTATCAGGAGCT 60.032 55.000 0.00 0.0 43.27 4.09 F
5214 10726 0.678950 TGTGATGGTCAGCGACTCAA 59.321 50.000 8.26 0.0 32.47 3.02 F
6792 12376 1.377994 CAGCAGCCTGGAGAACCTT 59.622 57.895 0.00 0.0 35.38 3.50 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1588 4961 1.096416 GACGTCTTCCCGAGATCACT 58.904 55.0 8.7 0.0 36.61 3.41 R
3379 7229 0.249868 TGAACAGGTCAAGTGCCTCG 60.250 55.0 0.0 0.0 33.31 4.63 R
3993 8222 1.039233 AAATCCCAAGCATGAGCCCG 61.039 55.0 0.0 0.0 43.56 6.13 R
5763 11343 0.267960 GGTCTATCCCTTCCCCTGGA 59.732 60.0 0.0 0.0 34.54 3.86 R
5839 11419 1.867363 TCCTCCCTAGCCTTTGAGAC 58.133 55.0 0.0 0.0 0.00 3.36 R
6956 12543 0.541764 GAAATGGAGTTGTGCCCCCA 60.542 55.0 0.0 0.0 0.00 4.96 R
7922 14550 0.030235 GTGCAGTGGGTTCCGAAAAC 59.970 55.0 0.0 0.0 0.00 2.43 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
53 54 5.488341 GTTTATGGAAGCTGTTGGAGACTA 58.512 41.667 0.00 0.00 0.00 2.59
54 55 5.957771 TTATGGAAGCTGTTGGAGACTAT 57.042 39.130 0.00 0.00 0.00 2.12
56 57 7.618019 TTATGGAAGCTGTTGGAGACTATAT 57.382 36.000 0.00 0.00 0.00 0.86
58 59 6.313519 TGGAAGCTGTTGGAGACTATATTT 57.686 37.500 0.00 0.00 0.00 1.40
61 62 7.336931 TGGAAGCTGTTGGAGACTATATTTTTC 59.663 37.037 0.00 0.00 0.00 2.29
71 73 6.017852 GGAGACTATATTTTTCTTTGGCCTCG 60.018 42.308 3.32 0.00 0.00 4.63
150 152 7.994425 AAAATACACAGAATACACATCCACA 57.006 32.000 0.00 0.00 0.00 4.17
154 156 4.515191 ACACAGAATACACATCCACACAAC 59.485 41.667 0.00 0.00 0.00 3.32
194 196 1.739562 GCTTCCCTCGAGCACACAG 60.740 63.158 6.99 0.00 39.89 3.66
292 294 3.473647 TCATGGGAGGCTGGAGCG 61.474 66.667 0.00 0.00 43.26 5.03
354 356 2.658593 CTATTGCGTCGCCCCTCG 60.659 66.667 15.88 0.00 40.15 4.63
460 480 1.888436 GACATGGTCGCAGTCTCCCA 61.888 60.000 0.00 0.00 0.00 4.37
462 482 1.913262 ATGGTCGCAGTCTCCCACA 60.913 57.895 0.00 0.00 0.00 4.17
495 515 1.741770 GCCGGCAGTGAAGGTACAG 60.742 63.158 24.80 0.00 0.00 2.74
505 525 5.932303 GCAGTGAAGGTACAGTCTAATTTGA 59.068 40.000 0.00 0.00 0.00 2.69
507 527 7.119846 GCAGTGAAGGTACAGTCTAATTTGATT 59.880 37.037 0.00 0.00 0.00 2.57
525 545 1.593196 TTGTGCTGTACTCTTGTGGC 58.407 50.000 0.00 0.00 0.00 5.01
529 549 0.790814 GCTGTACTCTTGTGGCGAAC 59.209 55.000 0.00 0.00 0.00 3.95
546 566 2.802816 CGAACTTTTGCAGACTGCTAGT 59.197 45.455 26.94 22.04 45.31 2.57
622 642 1.279558 TCATGCCGCCCAGTTAAACTA 59.720 47.619 0.00 0.00 0.00 2.24
632 652 5.357032 CGCCCAGTTAAACTAAAGGATGAAT 59.643 40.000 0.00 0.00 0.00 2.57
739 759 1.140452 CATAGTCAGGTCATGCAGCCT 59.860 52.381 0.00 0.00 35.04 4.58
778 799 0.896940 CCAACATGAGCTGGGCTTGT 60.897 55.000 0.00 0.00 39.88 3.16
790 811 1.290009 GGCTTGTGCATGTGGGTTC 59.710 57.895 0.00 0.00 41.91 3.62
853 875 2.584261 GATGCTGCCTCGAGCCTTCA 62.584 60.000 6.99 2.52 42.71 3.02
924 955 7.779798 TGAAATGGAGTCCCCTTATTAATTCAG 59.220 37.037 6.74 0.00 35.38 3.02
934 965 6.059484 CCCTTATTAATTCAGTCGCCCTTAA 58.941 40.000 0.00 0.00 0.00 1.85
1131 1170 2.367241 TGTGAACTTCATCAGGGACGAA 59.633 45.455 0.00 0.00 0.00 3.85
1392 4765 1.592669 CAGGAACCTGCGCTATCGG 60.593 63.158 9.73 6.51 37.24 4.18
1486 4859 0.537143 TGGCATCAACGAAGCAAGGT 60.537 50.000 0.00 0.00 0.00 3.50
1542 4915 2.483188 GGACCTCCACCAGCTAATTACG 60.483 54.545 0.00 0.00 35.64 3.18
1545 4918 2.224066 CCTCCACCAGCTAATTACGAGG 60.224 54.545 0.00 0.00 0.00 4.63
1555 4928 4.097437 AGCTAATTACGAGGAACGATGTGA 59.903 41.667 0.00 0.00 45.77 3.58
1671 5044 4.661222 TGTTTGGATTCTGTGCTTGGATA 58.339 39.130 0.00 0.00 0.00 2.59
1733 5106 5.280654 AGCTTGGTATGGCAATTTTATGG 57.719 39.130 0.00 0.00 0.00 2.74
1739 5112 9.829507 CTTGGTATGGCAATTTTATGGAAATTA 57.170 29.630 0.00 0.00 44.16 1.40
1772 5223 2.878406 TCGGAAAGCCTGAACAAGAAAG 59.122 45.455 0.00 0.00 0.00 2.62
1776 5227 4.580580 GGAAAGCCTGAACAAGAAAGAAGA 59.419 41.667 0.00 0.00 0.00 2.87
1788 5239 2.443255 AGAAAGAAGAGTTGGGGCTGAA 59.557 45.455 0.00 0.00 0.00 3.02
1829 5280 7.173047 GGAGAAGATGGATCAAAGAGATTTAGC 59.827 40.741 0.00 0.00 37.00 3.09
1838 5289 5.116180 TCAAAGAGATTTAGCCCGTATGTG 58.884 41.667 0.00 0.00 0.00 3.21
1844 5295 5.925509 AGATTTAGCCCGTATGTGTAATGT 58.074 37.500 0.00 0.00 0.00 2.71
1860 5311 5.178809 GTGTAATGTGGAGTTGTGTAGGAAC 59.821 44.000 0.00 0.00 0.00 3.62
1910 5361 4.265073 GTCACCATAGAAGAGTGGCATTT 58.735 43.478 0.00 0.00 39.13 2.32
1922 5373 7.449704 AGAAGAGTGGCATTTCATTAAGAAGTT 59.550 33.333 10.55 0.00 37.57 2.66
1923 5374 8.635765 AAGAGTGGCATTTCATTAAGAAGTTA 57.364 30.769 0.00 0.00 37.57 2.24
1944 5395 8.237811 AGTTATTTCCTGACAACAAGAAACAT 57.762 30.769 0.00 0.00 38.65 2.71
2001 5452 1.598924 GCAAGCTTGTGCACAGAGAAC 60.599 52.381 26.55 8.88 44.29 3.01
2117 5573 7.701924 TCTGCTATGTGTTTGTTTCTTTTTCTG 59.298 33.333 0.00 0.00 0.00 3.02
2167 5623 2.778299 ACGCCTAGTTGCAGAATTCAA 58.222 42.857 8.44 0.00 0.00 2.69
2177 5633 3.968649 TGCAGAATTCAAAACAGCAGAC 58.031 40.909 8.44 0.00 0.00 3.51
2290 5750 7.039152 TCCACCAGCTGATCAAAATTCAAATTA 60.039 33.333 17.39 0.00 0.00 1.40
2293 5754 8.755977 ACCAGCTGATCAAAATTCAAATTAGAT 58.244 29.630 17.39 4.11 0.00 1.98
2342 5808 7.107542 GGGTTCCATAAATGTTCAGTAGTGTA 58.892 38.462 0.00 0.00 0.00 2.90
2583 6351 8.970691 AAATCCTCAATATTTTGAAAGACACG 57.029 30.769 0.20 0.00 41.22 4.49
2584 6352 5.938322 TCCTCAATATTTTGAAAGACACGC 58.062 37.500 0.20 0.00 41.22 5.34
2689 6464 4.801914 GCATCATGTTCTGCTGAGCCTATA 60.802 45.833 0.23 0.00 35.49 1.31
2703 6545 4.588951 TGAGCCTATATCCGACTCAAACAT 59.411 41.667 0.00 0.00 34.59 2.71
2853 6695 0.035881 ACACTGACACTGGCTGATGG 59.964 55.000 0.00 0.00 0.00 3.51
3116 6958 3.936564 ACTGTTCAAGAAGATCCTGCTC 58.063 45.455 0.00 0.00 0.00 4.26
3342 7192 3.251004 GCCGAACATTGTTCAAGAGAAGT 59.749 43.478 24.96 0.00 33.63 3.01
3379 7229 5.819901 CCCTCTTGGAGTTCTGAAATATGAC 59.180 44.000 0.00 0.00 35.39 3.06
3472 7322 2.302733 TGCTTCTCCTTGCATCAGTACA 59.697 45.455 0.00 0.00 33.94 2.90
3474 7324 3.753272 GCTTCTCCTTGCATCAGTACAAA 59.247 43.478 0.00 0.00 0.00 2.83
3476 7326 5.586243 GCTTCTCCTTGCATCAGTACAAATA 59.414 40.000 0.00 0.00 0.00 1.40
3501 7372 2.470983 AGTTTGAGCCTTCTCTCTGC 57.529 50.000 0.00 0.00 40.03 4.26
3619 7732 8.335532 TGAAAAAGCCCTCCATTATTATATCG 57.664 34.615 0.00 0.00 0.00 2.92
3622 7735 7.923414 AAAGCCCTCCATTATTATATCGAAC 57.077 36.000 0.00 0.00 0.00 3.95
3678 7903 1.371183 CACACGTCATGGTGGGAGT 59.629 57.895 6.98 0.00 44.15 3.85
3787 8015 2.553028 CCAGTTAGACCTGTGCATGGTT 60.553 50.000 14.27 8.17 38.03 3.67
3788 8016 3.307410 CCAGTTAGACCTGTGCATGGTTA 60.307 47.826 14.27 7.41 38.03 2.85
3791 8019 0.035056 AGACCTGTGCATGGTTAGCC 60.035 55.000 14.27 3.70 38.03 3.93
3792 8020 1.000896 ACCTGTGCATGGTTAGCCC 60.001 57.895 8.33 0.00 33.34 5.19
3796 8024 3.727258 TGCATGGTTAGCCCGGCT 61.727 61.111 18.05 18.05 43.41 5.52
3797 8025 3.211963 GCATGGTTAGCCCGGCTG 61.212 66.667 22.95 5.93 40.10 4.85
3826 8054 2.649129 GCCTGAAAGCCCGGCATTT 61.649 57.895 13.15 9.21 43.25 2.32
3856 8084 0.967380 CGGGCTCCATTTTCTGGCTT 60.967 55.000 0.00 0.00 45.52 4.35
3857 8085 0.533951 GGGCTCCATTTTCTGGCTTG 59.466 55.000 0.00 0.00 45.52 4.01
3897 8125 6.699575 AGCCAGAAATGACCATAAATGTAC 57.300 37.500 0.00 0.00 0.00 2.90
3898 8126 5.296780 AGCCAGAAATGACCATAAATGTACG 59.703 40.000 0.00 0.00 0.00 3.67
3991 8220 1.950909 GTTCATGTGTTTCGGGTTGGA 59.049 47.619 0.00 0.00 0.00 3.53
3993 8222 0.596082 CATGTGTTTCGGGTTGGACC 59.404 55.000 0.00 0.00 37.60 4.46
4001 8230 3.728373 GGGTTGGACCGGGCTCAT 61.728 66.667 7.57 0.00 39.83 2.90
4008 8237 4.431131 ACCGGGCTCATGCTTGGG 62.431 66.667 6.32 0.00 37.61 4.12
4009 8238 4.113815 CCGGGCTCATGCTTGGGA 62.114 66.667 3.13 0.00 39.59 4.37
4015 8244 2.624636 GGCTCATGCTTGGGATTTTTG 58.375 47.619 3.13 0.00 39.59 2.44
4019 8248 4.320870 CTCATGCTTGGGATTTTTGCTTT 58.679 39.130 0.00 0.00 0.00 3.51
4020 8249 4.066490 TCATGCTTGGGATTTTTGCTTTG 58.934 39.130 0.00 0.00 0.00 2.77
4084 8334 3.265791 CAGTGATGGCTAAGAGTTGGTC 58.734 50.000 0.00 0.00 0.00 4.02
4086 8336 2.027192 GTGATGGCTAAGAGTTGGTCCA 60.027 50.000 0.00 0.00 0.00 4.02
4108 8362 0.031716 TCTGGGTGCTATCAGGAGCT 60.032 55.000 0.00 0.00 43.27 4.09
4265 8520 1.039856 AATGTGAAGGTGTTGTGGCC 58.960 50.000 0.00 0.00 0.00 5.36
4338 8610 1.808945 GATGTGACTCAAGTTGCCTGG 59.191 52.381 0.00 0.00 0.00 4.45
4576 8883 1.675310 CATCTTGGACTTGCCGGCA 60.675 57.895 29.03 29.03 40.66 5.69
4602 9888 6.109156 TCCTCATTGTGTGAAGTAGCTAAA 57.891 37.500 0.00 0.00 36.14 1.85
4662 10008 7.202016 TGTTTGGAGTAAATCTTGTCATGAC 57.798 36.000 19.27 19.27 0.00 3.06
4700 10050 6.440436 TCTTTTTACCGGTATTGTTTGAAGC 58.560 36.000 16.67 0.00 0.00 3.86
4711 10061 2.151202 TGTTTGAAGCGGATCTTGTCC 58.849 47.619 0.00 0.00 44.10 4.02
4803 10166 5.859205 AATAGCACCCATTTTTCCTCATC 57.141 39.130 0.00 0.00 0.00 2.92
4804 10167 3.463048 AGCACCCATTTTTCCTCATCT 57.537 42.857 0.00 0.00 0.00 2.90
4904 10287 8.749354 GGGATTTTAATAAAGTCCAGAACATGT 58.251 33.333 22.95 0.00 45.99 3.21
4950 10336 5.564651 CGCTCTTGGGTGTACATTTGAATTT 60.565 40.000 0.00 0.00 0.00 1.82
4968 10389 7.572523 TGAATTTTAGCAGTATCTGGGATTG 57.427 36.000 0.00 0.00 31.21 2.67
5048 10473 9.294030 CTCCATATGCAGAAAATTAAAGTTCAC 57.706 33.333 0.00 0.00 0.00 3.18
5073 10576 6.706270 CACCATTCCATGTAATAGTACTCCAC 59.294 42.308 0.00 0.00 0.00 4.02
5091 10594 6.601332 ACTCCACCCGATCATAATAATTGTT 58.399 36.000 0.00 0.00 0.00 2.83
5092 10595 6.486657 ACTCCACCCGATCATAATAATTGTTG 59.513 38.462 0.00 0.00 0.00 3.33
5139 10648 9.581289 TGGATGGAGTAAGAAATTTAAAGTTCA 57.419 29.630 25.29 7.56 35.60 3.18
5214 10726 0.678950 TGTGATGGTCAGCGACTCAA 59.321 50.000 8.26 0.00 32.47 3.02
5839 11419 8.483307 TCATGATATGATCCGTGAAATATGTG 57.517 34.615 0.00 0.00 33.59 3.21
6142 11722 3.244112 CCGTCACCTCAAGTACCTTTCTT 60.244 47.826 0.00 0.00 0.00 2.52
6426 12009 6.260050 GTCATGTTTTCTTGAGACCACAAGTA 59.740 38.462 0.00 0.00 44.96 2.24
6753 12337 5.574188 AGGAATGAGTTAGATGGCTGTTTT 58.426 37.500 0.00 0.00 0.00 2.43
6792 12376 1.377994 CAGCAGCCTGGAGAACCTT 59.622 57.895 0.00 0.00 35.38 3.50
6836 12420 7.935755 AGTCAATGTAACAGAATGGATCCATAG 59.064 37.037 27.54 20.89 43.62 2.23
6843 12427 4.166725 ACAGAATGGATCCATAGGCTTCAA 59.833 41.667 27.54 0.00 43.62 2.69
6862 12446 4.792068 TCAAAATCTCTCCAAGTTGGTGT 58.208 39.130 21.35 0.89 39.03 4.16
6867 12451 7.654022 AAATCTCTCCAAGTTGGTGTTAAAA 57.346 32.000 21.35 2.30 39.03 1.52
6904 12491 2.953648 CAAGATGATGCCATACAAGCCA 59.046 45.455 0.00 0.00 32.09 4.75
6956 12543 3.426159 CGCCTGCAATTTAACTCGTTCAT 60.426 43.478 0.00 0.00 0.00 2.57
6961 12548 3.428862 GCAATTTAACTCGTTCATGGGGG 60.429 47.826 0.00 0.00 0.00 5.40
6979 12566 0.890683 GGCACAACTCCATTTCCAGG 59.109 55.000 0.00 0.00 0.00 4.45
7000 12587 0.827368 GTCATCTTTCCCGAGCCTCT 59.173 55.000 0.00 0.00 0.00 3.69
7009 12596 2.345244 CGAGCCTCTTGGTGCTGT 59.655 61.111 0.00 0.00 38.11 4.40
7010 12597 2.031516 CGAGCCTCTTGGTGCTGTG 61.032 63.158 0.00 0.00 38.11 3.66
7162 12752 7.209475 CCTCAAAGAAATTCAGTTGCCTAAAA 58.791 34.615 0.00 0.00 0.00 1.52
7201 12791 8.806429 TTTCAATGAAATATTAGAGGTGCAGA 57.194 30.769 4.03 0.00 0.00 4.26
7202 12792 8.806429 TTCAATGAAATATTAGAGGTGCAGAA 57.194 30.769 0.00 0.00 0.00 3.02
7203 12793 8.806429 TCAATGAAATATTAGAGGTGCAGAAA 57.194 30.769 0.00 0.00 0.00 2.52
7204 12794 8.896744 TCAATGAAATATTAGAGGTGCAGAAAG 58.103 33.333 0.00 0.00 0.00 2.62
7205 12795 8.896744 CAATGAAATATTAGAGGTGCAGAAAGA 58.103 33.333 0.00 0.00 0.00 2.52
7206 12796 9.638176 AATGAAATATTAGAGGTGCAGAAAGAT 57.362 29.630 0.00 0.00 0.00 2.40
7207 12797 8.442632 TGAAATATTAGAGGTGCAGAAAGATG 57.557 34.615 0.00 0.00 0.00 2.90
7208 12798 7.500227 TGAAATATTAGAGGTGCAGAAAGATGG 59.500 37.037 0.00 0.00 0.00 3.51
7209 12799 4.851639 ATTAGAGGTGCAGAAAGATGGT 57.148 40.909 0.00 0.00 0.00 3.55
7210 12800 4.640771 TTAGAGGTGCAGAAAGATGGTT 57.359 40.909 0.00 0.00 0.00 3.67
7211 12801 5.755409 TTAGAGGTGCAGAAAGATGGTTA 57.245 39.130 0.00 0.00 0.00 2.85
7212 12802 3.944087 AGAGGTGCAGAAAGATGGTTAC 58.056 45.455 0.00 0.00 0.00 2.50
7213 12803 3.327757 AGAGGTGCAGAAAGATGGTTACA 59.672 43.478 0.00 0.00 0.00 2.41
7214 12804 3.679389 AGGTGCAGAAAGATGGTTACAG 58.321 45.455 0.00 0.00 0.00 2.74
7215 12805 3.327757 AGGTGCAGAAAGATGGTTACAGA 59.672 43.478 0.00 0.00 0.00 3.41
7216 12806 4.018960 AGGTGCAGAAAGATGGTTACAGAT 60.019 41.667 0.00 0.00 0.00 2.90
7217 12807 5.189736 AGGTGCAGAAAGATGGTTACAGATA 59.810 40.000 0.00 0.00 0.00 1.98
7218 12808 6.058183 GGTGCAGAAAGATGGTTACAGATAT 58.942 40.000 0.00 0.00 0.00 1.63
7248 12841 3.853355 ATATTTGAGGTGCAGAGGGAG 57.147 47.619 0.00 0.00 0.00 4.30
7254 12847 2.753029 GTGCAGAGGGAGCAGGTT 59.247 61.111 0.00 0.00 43.63 3.50
7260 12853 0.411452 AGAGGGAGCAGGTTGAGAGA 59.589 55.000 0.00 0.00 0.00 3.10
7291 12884 2.138320 AGCACGTGAGAGTGAACATTG 58.862 47.619 22.23 0.00 44.43 2.82
7372 12965 3.921677 TCCATCGGATTCTTATTACCGC 58.078 45.455 0.00 0.00 44.19 5.68
7379 12972 4.209288 CGGATTCTTATTACCGCACTTCTG 59.791 45.833 0.00 0.00 38.98 3.02
7381 12974 2.901249 TCTTATTACCGCACTTCTGCC 58.099 47.619 0.00 0.00 40.73 4.85
7382 12975 2.500098 TCTTATTACCGCACTTCTGCCT 59.500 45.455 0.00 0.00 40.73 4.75
7384 12977 1.739067 ATTACCGCACTTCTGCCTTC 58.261 50.000 0.00 0.00 40.73 3.46
7386 12979 1.552578 TACCGCACTTCTGCCTTCTA 58.447 50.000 0.00 0.00 40.73 2.10
7389 12982 1.634702 CGCACTTCTGCCTTCTACTC 58.365 55.000 0.00 0.00 40.73 2.59
7398 12995 6.266558 ACTTCTGCCTTCTACTCCTATACATG 59.733 42.308 0.00 0.00 0.00 3.21
7399 12996 4.524714 TCTGCCTTCTACTCCTATACATGC 59.475 45.833 0.00 0.00 0.00 4.06
7400 12997 4.223144 TGCCTTCTACTCCTATACATGCA 58.777 43.478 0.00 0.00 0.00 3.96
7401 12998 4.281941 TGCCTTCTACTCCTATACATGCAG 59.718 45.833 0.00 0.00 0.00 4.41
7402 12999 4.524714 GCCTTCTACTCCTATACATGCAGA 59.475 45.833 0.00 0.00 0.00 4.26
7403 13000 5.186797 GCCTTCTACTCCTATACATGCAGAT 59.813 44.000 0.00 0.00 0.00 2.90
7404 13001 6.629128 CCTTCTACTCCTATACATGCAGATG 58.371 44.000 0.00 0.00 35.49 2.90
7424 13021 6.920758 CAGATGCAGTAGGACTAGTAATTGAC 59.079 42.308 0.00 0.00 0.00 3.18
7487 13104 5.116180 GCAGCAGTGGTATGTATCACTTAA 58.884 41.667 3.25 0.00 44.85 1.85
7553 13171 4.623932 AATCACAAGCTACTGACAGGAA 57.376 40.909 7.51 0.00 0.00 3.36
7555 13173 2.965831 TCACAAGCTACTGACAGGAAGT 59.034 45.455 7.51 0.00 0.00 3.01
7581 13199 8.650143 ATCCTTTGTGTATTCCTTTGTTGTAT 57.350 30.769 0.00 0.00 0.00 2.29
7582 13200 8.472007 TCCTTTGTGTATTCCTTTGTTGTATT 57.528 30.769 0.00 0.00 0.00 1.89
7583 13201 8.573035 TCCTTTGTGTATTCCTTTGTTGTATTC 58.427 33.333 0.00 0.00 0.00 1.75
7584 13202 7.812669 CCTTTGTGTATTCCTTTGTTGTATTCC 59.187 37.037 0.00 0.00 0.00 3.01
7585 13203 8.472007 TTTGTGTATTCCTTTGTTGTATTCCT 57.528 30.769 0.00 0.00 0.00 3.36
7586 13204 8.472007 TTGTGTATTCCTTTGTTGTATTCCTT 57.528 30.769 0.00 0.00 0.00 3.36
7588 13206 8.356657 TGTGTATTCCTTTGTTGTATTCCTTTG 58.643 33.333 0.00 0.00 0.00 2.77
7589 13207 8.357402 GTGTATTCCTTTGTTGTATTCCTTTGT 58.643 33.333 0.00 0.00 0.00 2.83
7590 13208 8.919145 TGTATTCCTTTGTTGTATTCCTTTGTT 58.081 29.630 0.00 0.00 0.00 2.83
7591 13209 9.191995 GTATTCCTTTGTTGTATTCCTTTGTTG 57.808 33.333 0.00 0.00 0.00 3.33
7593 13211 7.883391 TCCTTTGTTGTATTCCTTTGTTGTA 57.117 32.000 0.00 0.00 0.00 2.41
7594 13212 8.472007 TCCTTTGTTGTATTCCTTTGTTGTAT 57.528 30.769 0.00 0.00 0.00 2.29
7596 13214 7.116233 CCTTTGTTGTATTCCTTTGTTGTATGC 59.884 37.037 0.00 0.00 0.00 3.14
7597 13215 6.019779 TGTTGTATTCCTTTGTTGTATGCC 57.980 37.500 0.00 0.00 0.00 4.40
7599 13217 6.210385 TGTTGTATTCCTTTGTTGTATGCCAT 59.790 34.615 0.00 0.00 0.00 4.40
7628 13254 3.189618 TGCAGCTAGAACAGGATGATG 57.810 47.619 0.00 0.00 39.69 3.07
7629 13255 1.872313 GCAGCTAGAACAGGATGATGC 59.128 52.381 0.00 0.00 39.69 3.91
7630 13256 2.744166 GCAGCTAGAACAGGATGATGCA 60.744 50.000 0.00 0.00 39.69 3.96
7631 13257 3.132160 CAGCTAGAACAGGATGATGCAG 58.868 50.000 0.00 0.00 39.69 4.41
7633 13259 2.485124 GCTAGAACAGGATGATGCAGCT 60.485 50.000 2.53 0.00 39.69 4.24
7634 13260 2.039818 AGAACAGGATGATGCAGCTG 57.960 50.000 10.11 10.11 39.69 4.24
7635 13261 1.558294 AGAACAGGATGATGCAGCTGA 59.442 47.619 20.43 2.70 39.69 4.26
7636 13262 2.026542 AGAACAGGATGATGCAGCTGAA 60.027 45.455 20.43 7.68 39.69 3.02
7637 13263 2.039818 ACAGGATGATGCAGCTGAAG 57.960 50.000 20.43 0.00 39.69 3.02
7638 13264 0.663688 CAGGATGATGCAGCTGAAGC 59.336 55.000 20.43 11.46 39.69 3.86
7639 13265 0.465824 AGGATGATGCAGCTGAAGCC 60.466 55.000 20.43 11.47 43.38 4.35
7640 13266 1.647629 GATGATGCAGCTGAAGCCG 59.352 57.895 20.43 0.00 43.38 5.52
7641 13267 0.812811 GATGATGCAGCTGAAGCCGA 60.813 55.000 20.43 0.00 43.38 5.54
7642 13268 0.393402 ATGATGCAGCTGAAGCCGAA 60.393 50.000 20.43 0.00 43.38 4.30
7643 13269 0.606130 TGATGCAGCTGAAGCCGAAA 60.606 50.000 20.43 0.00 43.38 3.46
7644 13270 0.523072 GATGCAGCTGAAGCCGAAAA 59.477 50.000 20.43 0.00 43.38 2.29
7645 13271 0.961019 ATGCAGCTGAAGCCGAAAAA 59.039 45.000 20.43 0.00 43.38 1.94
7663 13289 2.959507 AAAGAAAACGGCAACTTGCT 57.040 40.000 13.43 0.00 44.28 3.91
7664 13290 2.492019 AAGAAAACGGCAACTTGCTC 57.508 45.000 13.43 3.09 44.28 4.26
7665 13291 1.680338 AGAAAACGGCAACTTGCTCT 58.320 45.000 13.43 5.32 44.28 4.09
7666 13292 1.334869 AGAAAACGGCAACTTGCTCTG 59.665 47.619 13.43 6.67 44.28 3.35
7667 13293 1.065551 GAAAACGGCAACTTGCTCTGT 59.934 47.619 13.43 7.25 44.28 3.41
7668 13294 1.102978 AAACGGCAACTTGCTCTGTT 58.897 45.000 13.43 12.20 44.28 3.16
7682 13308 2.816672 GCTCTGTTCCAAAAGAAGAGGG 59.183 50.000 0.00 0.00 46.80 4.30
7721 13347 2.787249 CACATGTAGTGCTGCCGC 59.213 61.111 0.00 0.00 42.15 6.53
7732 13358 1.468520 GTGCTGCCGCTTCAAGATTAA 59.531 47.619 0.70 0.00 36.97 1.40
7743 13369 4.035208 GCTTCAAGATTAACCATGTACGGG 59.965 45.833 2.04 2.04 0.00 5.28
7745 13371 3.055021 TCAAGATTAACCATGTACGGGCA 60.055 43.478 3.44 0.00 0.00 5.36
7748 13374 2.563261 TTAACCATGTACGGGCACAA 57.437 45.000 3.44 0.00 30.84 3.33
7752 13378 0.321210 CCATGTACGGGCACAACAGA 60.321 55.000 0.00 0.00 30.84 3.41
7754 13380 2.083774 CATGTACGGGCACAACAGATT 58.916 47.619 0.00 0.00 30.84 2.40
7755 13381 3.266636 CATGTACGGGCACAACAGATTA 58.733 45.455 0.00 0.00 30.84 1.75
7756 13382 2.967362 TGTACGGGCACAACAGATTAG 58.033 47.619 0.00 0.00 0.00 1.73
7757 13383 1.664151 GTACGGGCACAACAGATTAGC 59.336 52.381 0.00 0.00 0.00 3.09
7758 13384 0.676782 ACGGGCACAACAGATTAGCC 60.677 55.000 0.00 0.00 44.48 3.93
7760 13386 1.767759 GGGCACAACAGATTAGCCAT 58.232 50.000 0.00 0.00 46.96 4.40
7761 13387 1.406539 GGGCACAACAGATTAGCCATG 59.593 52.381 0.00 0.00 46.96 3.66
7762 13388 2.094675 GGCACAACAGATTAGCCATGT 58.905 47.619 0.00 0.00 44.59 3.21
7763 13389 3.278574 GGCACAACAGATTAGCCATGTA 58.721 45.455 0.00 0.00 44.59 2.29
7764 13390 3.885297 GGCACAACAGATTAGCCATGTAT 59.115 43.478 0.00 0.00 44.59 2.29
7766 13392 5.530915 GGCACAACAGATTAGCCATGTATAA 59.469 40.000 0.00 0.00 44.59 0.98
7767 13393 6.207417 GGCACAACAGATTAGCCATGTATAAT 59.793 38.462 0.00 0.00 44.59 1.28
7769 13395 8.230486 GCACAACAGATTAGCCATGTATAATAC 58.770 37.037 0.00 0.00 0.00 1.89
7770 13396 9.271828 CACAACAGATTAGCCATGTATAATACA 57.728 33.333 0.00 0.00 43.80 2.29
7771 13397 9.494271 ACAACAGATTAGCCATGTATAATACAG 57.506 33.333 0.00 0.00 42.77 2.74
7772 13398 8.939929 CAACAGATTAGCCATGTATAATACAGG 58.060 37.037 0.00 0.00 42.77 4.00
7805 13452 4.026052 TCTCTCACAGCCATCTCATTGTA 58.974 43.478 0.00 0.00 0.00 2.41
7815 14443 4.581824 GCCATCTCATTGTATGAACCATGT 59.418 41.667 0.00 0.00 39.11 3.21
7850 14478 3.915437 ATTCATGTTTGTTCCCGACAC 57.085 42.857 0.00 0.00 38.18 3.67
7853 14481 2.158885 TCATGTTTGTTCCCGACACTGA 60.159 45.455 0.00 0.00 38.18 3.41
7859 14487 5.357314 TGTTTGTTCCCGACACTGAATTTTA 59.643 36.000 0.00 0.00 38.18 1.52
7866 14494 8.938906 GTTCCCGACACTGAATTTTACTATTTA 58.061 33.333 0.00 0.00 0.00 1.40
7889 14517 6.944234 AACTACTTTCTTTTTCTCTGGTGG 57.056 37.500 0.00 0.00 0.00 4.61
7890 14518 4.822350 ACTACTTTCTTTTTCTCTGGTGGC 59.178 41.667 0.00 0.00 0.00 5.01
7891 14519 3.631250 ACTTTCTTTTTCTCTGGTGGCA 58.369 40.909 0.00 0.00 0.00 4.92
7892 14520 4.023291 ACTTTCTTTTTCTCTGGTGGCAA 58.977 39.130 0.00 0.00 0.00 4.52
7893 14521 4.142160 ACTTTCTTTTTCTCTGGTGGCAAC 60.142 41.667 0.00 0.00 0.00 4.17
7894 14522 3.297134 TCTTTTTCTCTGGTGGCAACT 57.703 42.857 3.27 0.00 37.61 3.16
7902 14530 2.430367 GGTGGCAACTCCGGACTT 59.570 61.111 0.00 0.00 41.04 3.01
7904 14532 0.252197 GGTGGCAACTCCGGACTTAT 59.748 55.000 0.00 0.00 41.04 1.73
7905 14533 1.369625 GTGGCAACTCCGGACTTATG 58.630 55.000 0.00 0.00 37.80 1.90
7906 14534 0.981183 TGGCAACTCCGGACTTATGT 59.019 50.000 0.00 0.00 37.80 2.29
7907 14535 1.338674 TGGCAACTCCGGACTTATGTG 60.339 52.381 0.00 0.00 37.80 3.21
7908 14536 1.066430 GGCAACTCCGGACTTATGTGA 60.066 52.381 0.00 0.00 0.00 3.58
7909 14537 2.000447 GCAACTCCGGACTTATGTGAC 59.000 52.381 0.00 0.00 0.00 3.67
7911 14539 3.864921 GCAACTCCGGACTTATGTGACTT 60.865 47.826 0.00 0.00 0.00 3.01
7912 14540 4.315803 CAACTCCGGACTTATGTGACTTT 58.684 43.478 0.00 0.00 0.00 2.66
7913 14541 4.618920 ACTCCGGACTTATGTGACTTTT 57.381 40.909 0.00 0.00 0.00 2.27
7914 14542 4.566987 ACTCCGGACTTATGTGACTTTTC 58.433 43.478 0.00 0.00 0.00 2.29
7915 14543 4.039973 ACTCCGGACTTATGTGACTTTTCA 59.960 41.667 0.00 0.00 0.00 2.69
7916 14544 4.963373 TCCGGACTTATGTGACTTTTCAA 58.037 39.130 0.00 0.00 31.90 2.69
7917 14545 5.556915 TCCGGACTTATGTGACTTTTCAAT 58.443 37.500 0.00 0.00 31.90 2.57
7919 14547 6.488683 TCCGGACTTATGTGACTTTTCAATTT 59.511 34.615 0.00 0.00 31.90 1.82
7920 14548 7.013846 TCCGGACTTATGTGACTTTTCAATTTT 59.986 33.333 0.00 0.00 31.90 1.82
7921 14549 7.326063 CCGGACTTATGTGACTTTTCAATTTTC 59.674 37.037 0.00 0.00 31.90 2.29
7922 14550 7.059488 CGGACTTATGTGACTTTTCAATTTTCG 59.941 37.037 0.00 0.00 31.90 3.46
7923 14551 7.860872 GGACTTATGTGACTTTTCAATTTTCGT 59.139 33.333 0.00 0.00 31.90 3.85
7924 14552 9.233232 GACTTATGTGACTTTTCAATTTTCGTT 57.767 29.630 0.00 0.00 31.90 3.85
7925 14553 9.581099 ACTTATGTGACTTTTCAATTTTCGTTT 57.419 25.926 0.00 0.00 31.90 3.60
7928 14556 6.972941 TGTGACTTTTCAATTTTCGTTTTCG 58.027 32.000 0.00 0.00 37.89 3.46
7929 14557 6.034044 TGTGACTTTTCAATTTTCGTTTTCGG 59.966 34.615 0.00 0.00 37.43 4.30
7930 14558 6.251801 GTGACTTTTCAATTTTCGTTTTCGGA 59.748 34.615 0.00 0.00 37.43 4.55
7931 14559 6.807230 TGACTTTTCAATTTTCGTTTTCGGAA 59.193 30.769 0.00 0.00 44.25 4.30
7932 14560 6.985013 ACTTTTCAATTTTCGTTTTCGGAAC 58.015 32.000 0.00 0.00 40.81 3.62
7933 14561 5.952698 TTTCAATTTTCGTTTTCGGAACC 57.047 34.783 0.00 0.00 40.81 3.62
7934 14562 3.967401 TCAATTTTCGTTTTCGGAACCC 58.033 40.909 0.00 0.00 40.81 4.11
7935 14563 3.380637 TCAATTTTCGTTTTCGGAACCCA 59.619 39.130 0.00 0.00 40.81 4.51
7936 14564 2.847959 TTTTCGTTTTCGGAACCCAC 57.152 45.000 0.00 0.00 40.81 4.61
7937 14565 2.041251 TTTCGTTTTCGGAACCCACT 57.959 45.000 0.00 0.00 44.25 4.00
7938 14566 1.301423 TTCGTTTTCGGAACCCACTG 58.699 50.000 0.00 0.00 44.25 3.66
7941 14569 0.030235 GTTTTCGGAACCCACTGCAC 59.970 55.000 0.00 0.00 0.00 4.57
7994 14623 8.579850 TTTCAAGTTCAGCTGGTATTATTCAT 57.420 30.769 15.13 0.00 0.00 2.57
8002 14631 6.830324 TCAGCTGGTATTATTCATTGCTTTCT 59.170 34.615 15.13 0.00 0.00 2.52
8006 14635 7.415541 GCTGGTATTATTCATTGCTTTCTGTCA 60.416 37.037 0.00 0.00 0.00 3.58
8008 14637 8.623903 TGGTATTATTCATTGCTTTCTGTCATC 58.376 33.333 0.00 0.00 0.00 2.92
8015 14644 6.051074 TCATTGCTTTCTGTCATCGTATCAT 58.949 36.000 0.00 0.00 0.00 2.45
8038 14667 1.213537 CATTGCAGCTGGAAACGGG 59.786 57.895 25.06 10.82 37.13 5.28
8045 14674 0.609131 AGCTGGAAACGGGATGTTGG 60.609 55.000 0.00 0.00 40.84 3.77
8047 14676 0.609131 CTGGAAACGGGATGTTGGCT 60.609 55.000 0.00 0.00 40.84 4.75
8069 14698 2.229784 GGCTGTTGTGCTCTGCTAAATT 59.770 45.455 0.00 0.00 0.00 1.82
8080 14709 3.932710 CTCTGCTAAATTAACTGACGCCA 59.067 43.478 0.00 0.00 0.00 5.69
8106 14735 0.383949 GGACAGCGGCAACAAAGAAA 59.616 50.000 1.45 0.00 0.00 2.52
8138 14773 5.190925 TCCATTTACTTAGGTATGGTGCAGT 59.809 40.000 6.66 0.00 32.66 4.40
8141 14776 1.838077 ACTTAGGTATGGTGCAGTCCC 59.162 52.381 0.00 0.00 0.00 4.46
8171 14806 2.357517 AACCGAAGTGGCAGCTCG 60.358 61.111 10.40 10.40 43.94 5.03
8175 14810 2.671177 CGAAGTGGCAGCTCGGTTG 61.671 63.158 9.67 0.00 0.00 3.77
8176 14811 1.598130 GAAGTGGCAGCTCGGTTGT 60.598 57.895 0.00 0.00 0.00 3.32
8177 14812 1.569479 GAAGTGGCAGCTCGGTTGTC 61.569 60.000 0.00 0.00 0.00 3.18
8178 14813 2.031163 GTGGCAGCTCGGTTGTCT 59.969 61.111 0.00 0.00 0.00 3.41
8179 14814 2.029844 GTGGCAGCTCGGTTGTCTC 61.030 63.158 0.00 0.00 0.00 3.36
8218 14853 2.099263 TGAGCAATACTACCTCGCACTC 59.901 50.000 0.00 0.00 0.00 3.51
8239 14874 7.201705 GCACTCTAATTTCATTAGTTACCCACC 60.202 40.741 3.93 0.00 42.21 4.61
8244 14879 9.855021 CTAATTTCATTAGTTACCCACCAAAAG 57.145 33.333 0.00 0.00 37.91 2.27
8245 14880 6.658188 TTTCATTAGTTACCCACCAAAAGG 57.342 37.500 0.00 0.00 0.00 3.11
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 5.373812 AAAGATTATGTCATCCCGGAAGT 57.626 39.130 0.73 0.00 0.00 3.01
2 3 6.699575 AAAAAGATTATGTCATCCCGGAAG 57.300 37.500 0.73 0.00 0.00 3.46
26 27 2.432444 CAACAGCTTCCATAAACCCGA 58.568 47.619 0.00 0.00 0.00 5.14
53 54 5.812127 GCAAATCGAGGCCAAAGAAAAATAT 59.188 36.000 5.01 0.00 0.00 1.28
54 55 5.167845 GCAAATCGAGGCCAAAGAAAAATA 58.832 37.500 5.01 0.00 0.00 1.40
56 57 3.389221 GCAAATCGAGGCCAAAGAAAAA 58.611 40.909 5.01 0.00 0.00 1.94
58 59 2.723124 GCAAATCGAGGCCAAAGAAA 57.277 45.000 5.01 0.00 0.00 2.52
95 97 7.995463 TTTCAAGTATTTTTCCGTTTTCCAG 57.005 32.000 0.00 0.00 0.00 3.86
99 101 6.019398 CGCCTTTTCAAGTATTTTTCCGTTTT 60.019 34.615 0.00 0.00 0.00 2.43
101 103 4.979815 CGCCTTTTCAAGTATTTTTCCGTT 59.020 37.500 0.00 0.00 0.00 4.44
104 106 7.933728 TTTACGCCTTTTCAAGTATTTTTCC 57.066 32.000 0.00 0.00 0.00 3.13
108 110 9.401873 GTGTATTTTACGCCTTTTCAAGTATTT 57.598 29.630 0.00 0.00 33.21 1.40
121 123 6.411630 TGTGTATTCTGTGTATTTTACGCC 57.588 37.500 0.00 0.00 38.38 5.68
123 125 8.114290 GTGGATGTGTATTCTGTGTATTTTACG 58.886 37.037 0.00 0.00 0.00 3.18
154 156 0.107848 ACCCAGGGATTACGCTTTCG 60.108 55.000 14.54 0.00 37.19 3.46
203 205 4.301072 CCCCCTACTTTCAGTGATTTCA 57.699 45.455 0.00 0.00 0.00 2.69
255 257 2.887568 GCCGTCTGACTGCCATCG 60.888 66.667 12.50 0.00 0.00 3.84
275 277 3.473647 CGCTCCAGCCTCCCATGA 61.474 66.667 0.00 0.00 37.91 3.07
292 294 4.427394 CAGTCCGATAGCTGCCAC 57.573 61.111 0.00 0.00 0.00 5.01
319 321 3.320078 CAATCGACGCCGTAGCCG 61.320 66.667 0.00 0.00 37.05 5.52
383 385 3.368571 GCTTGAGGTGGCCTGCAC 61.369 66.667 3.32 0.00 31.76 4.57
495 515 7.602517 AGAGTACAGCACAATCAAATTAGAC 57.397 36.000 0.00 0.00 0.00 2.59
505 525 2.154462 GCCACAAGAGTACAGCACAAT 58.846 47.619 0.00 0.00 0.00 2.71
507 527 0.599991 CGCCACAAGAGTACAGCACA 60.600 55.000 0.00 0.00 0.00 4.57
586 606 4.626042 GGCATGACCTGACTGACTAATAG 58.374 47.826 0.00 0.00 34.51 1.73
739 759 8.001881 TGTTGGCTTTCAGATTGTTAAAACTA 57.998 30.769 0.00 0.00 0.00 2.24
778 799 2.287769 CATCATACGAACCCACATGCA 58.712 47.619 0.00 0.00 0.00 3.96
790 811 7.693952 ACAAAGTAATTTAGCACCATCATACG 58.306 34.615 0.00 0.00 0.00 3.06
853 875 4.403752 GGGCATTTTTCTTCTTCATAGGCT 59.596 41.667 0.00 0.00 0.00 4.58
924 955 2.000447 CTAACAGCTGTTAAGGGCGAC 59.000 52.381 32.86 0.00 39.70 5.19
1453 4826 3.113979 GCCAAACATTGCAGCGCC 61.114 61.111 2.29 0.00 0.00 6.53
1454 4827 1.689352 GATGCCAAACATTGCAGCGC 61.689 55.000 0.00 0.00 41.46 5.92
1497 4870 5.357314 CACCTCTGATGATTTTTCATGCTCT 59.643 40.000 0.00 0.00 0.00 4.09
1536 4909 5.661458 AGATTCACATCGTTCCTCGTAATT 58.339 37.500 0.00 0.00 40.80 1.40
1542 4915 4.141914 ACCCTAAGATTCACATCGTTCCTC 60.142 45.833 0.00 0.00 34.17 3.71
1545 4918 4.755411 TCACCCTAAGATTCACATCGTTC 58.245 43.478 0.00 0.00 34.17 3.95
1555 4928 2.439507 ACATGGCGATCACCCTAAGATT 59.560 45.455 0.00 0.00 0.00 2.40
1588 4961 1.096416 GACGTCTTCCCGAGATCACT 58.904 55.000 8.70 0.00 36.61 3.41
1618 4991 5.010708 ACCTTTGGGTCATCATAAACCTT 57.989 39.130 0.00 0.00 43.38 3.50
1671 5044 3.760684 GACTGAAAGGATGCATCAACCTT 59.239 43.478 27.25 19.00 46.18 3.50
1733 5106 4.703897 TCCGACCTCATCATGGTAATTTC 58.296 43.478 0.00 0.00 38.03 2.17
1739 5112 1.407437 GCTTTCCGACCTCATCATGGT 60.407 52.381 0.00 0.00 41.07 3.55
1752 5203 2.878406 TCTTTCTTGTTCAGGCTTTCCG 59.122 45.455 0.00 0.00 37.47 4.30
1772 5223 3.192212 CAGAATTTCAGCCCCAACTCTTC 59.808 47.826 0.00 0.00 0.00 2.87
1776 5227 1.928868 CCAGAATTTCAGCCCCAACT 58.071 50.000 0.00 0.00 0.00 3.16
1788 5239 2.905415 TCTCCATGTTGGCCAGAATT 57.095 45.000 5.11 0.00 37.47 2.17
1829 5280 3.536956 ACTCCACATTACACATACGGG 57.463 47.619 0.00 0.00 0.00 5.28
1838 5289 5.302360 TGTTCCTACACAACTCCACATTAC 58.698 41.667 0.00 0.00 0.00 1.89
1844 5295 2.047061 AGCTGTTCCTACACAACTCCA 58.953 47.619 0.00 0.00 0.00 3.86
1860 5311 5.185454 TCATTTATGACAACCAGGTAGCTG 58.815 41.667 15.13 15.13 0.00 4.24
1910 5361 9.567776 TGTTGTCAGGAAATAACTTCTTAATGA 57.432 29.630 0.00 0.00 34.17 2.57
1922 5373 8.918202 ACTATGTTTCTTGTTGTCAGGAAATA 57.082 30.769 8.30 6.72 46.06 1.40
1923 5374 7.823745 ACTATGTTTCTTGTTGTCAGGAAAT 57.176 32.000 8.30 0.00 46.06 2.17
1944 5395 4.142337 TGCGTGGAAACGATGATTCTACTA 60.142 41.667 1.87 0.00 36.47 1.82
2001 5452 2.747446 CAACTCCGAAACTTGGTATGGG 59.253 50.000 0.00 0.00 0.00 4.00
2023 5474 4.023792 TGTTTGATCACATGACAACTGCTC 60.024 41.667 0.00 0.00 0.00 4.26
2167 5623 3.614092 CATCCATACTGGTCTGCTGTTT 58.386 45.455 0.00 0.00 39.03 2.83
2177 5633 2.279741 CACGAACACCATCCATACTGG 58.720 52.381 0.00 0.00 39.43 4.00
2236 5692 1.269998 CTTCGGTTTCTCCTCTGACGT 59.730 52.381 0.00 0.00 0.00 4.34
2239 5695 1.618837 CACCTTCGGTTTCTCCTCTGA 59.381 52.381 0.00 0.00 31.02 3.27
2293 5754 8.859090 CCCAAATATAATCCATAGACAAGCAAA 58.141 33.333 0.00 0.00 0.00 3.68
2342 5808 5.523916 GTGCGTGTATGAGGATAGAAACAAT 59.476 40.000 0.00 0.00 0.00 2.71
2381 5849 1.660607 AGCTCATTCATAACGTGCACG 59.339 47.619 35.99 35.99 46.33 5.34
2582 6350 1.678627 ACATCTAGACTACCTGCTGCG 59.321 52.381 0.00 0.00 0.00 5.18
2583 6351 2.690497 TCACATCTAGACTACCTGCTGC 59.310 50.000 0.00 0.00 0.00 5.25
2584 6352 4.991153 TTCACATCTAGACTACCTGCTG 57.009 45.455 0.00 0.00 0.00 4.41
2689 6464 7.642082 AGTAGTAACTATGTTTGAGTCGGAT 57.358 36.000 0.00 0.00 32.84 4.18
2853 6695 2.125753 CTCGCCCACAGAGCAGTC 60.126 66.667 0.00 0.00 0.00 3.51
2902 6744 1.228862 ATTGTGGTCTGGTTGGCCC 60.229 57.895 0.00 0.00 40.46 5.80
3116 6958 1.369209 CGCCAGTTGTTGTTGCTCG 60.369 57.895 0.00 0.00 0.00 5.03
3316 7166 4.083324 TCTCTTGAACAATGTTCGGCAATC 60.083 41.667 19.66 0.00 0.00 2.67
3342 7192 2.571653 CCAAGAGGGTACATGTTCCTGA 59.428 50.000 20.72 0.00 0.00 3.86
3379 7229 0.249868 TGAACAGGTCAAGTGCCTCG 60.250 55.000 0.00 0.00 33.31 4.63
3472 7322 9.336171 GAGAGAAGGCTCAAACTTATGATATTT 57.664 33.333 0.00 0.00 43.81 1.40
3474 7324 8.149647 CAGAGAGAAGGCTCAAACTTATGATAT 58.850 37.037 0.00 0.00 43.81 1.63
3476 7326 6.347696 CAGAGAGAAGGCTCAAACTTATGAT 58.652 40.000 0.00 0.00 43.81 2.45
3501 7372 6.349363 GCTTTTATACTTCCACAAAGTCTGGG 60.349 42.308 0.00 0.00 45.28 4.45
3600 7713 6.620877 TGTTCGATATAATAATGGAGGGCT 57.379 37.500 0.00 0.00 0.00 5.19
3619 7732 7.500559 AGCTGGTCCAGATCTAATATTTTGTTC 59.499 37.037 23.77 0.00 32.44 3.18
3622 7735 7.646314 CAAGCTGGTCCAGATCTAATATTTTG 58.354 38.462 23.77 4.17 32.44 2.44
3678 7903 3.088532 GCACCTATTCACATGAACCCAA 58.911 45.455 0.00 0.00 36.80 4.12
3831 8059 2.019897 GAAAATGGAGCCCGGGCATG 62.020 60.000 45.13 10.07 44.88 4.06
3832 8060 1.758122 GAAAATGGAGCCCGGGCAT 60.758 57.895 45.13 30.48 44.88 4.40
3856 8084 1.152652 TTTTTCGGGCCAGGCTTCA 60.153 52.632 12.43 0.00 0.00 3.02
3857 8085 1.586541 CTTTTTCGGGCCAGGCTTC 59.413 57.895 12.43 3.19 0.00 3.86
3865 8093 1.272212 TCATTTCTGGCTTTTTCGGGC 59.728 47.619 0.00 0.00 0.00 6.13
3991 8220 4.431131 CCCAAGCATGAGCCCGGT 62.431 66.667 0.00 0.00 43.56 5.28
3993 8222 1.039233 AAATCCCAAGCATGAGCCCG 61.039 55.000 0.00 0.00 43.56 6.13
3998 8227 4.066490 CAAAGCAAAAATCCCAAGCATGA 58.934 39.130 0.00 0.00 0.00 3.07
4000 8229 3.414269 CCAAAGCAAAAATCCCAAGCAT 58.586 40.909 0.00 0.00 0.00 3.79
4001 8230 2.486907 CCCAAAGCAAAAATCCCAAGCA 60.487 45.455 0.00 0.00 0.00 3.91
4036 8281 1.526917 CCTGATCATTCACCGGGCC 60.527 63.158 6.32 0.00 0.00 5.80
4049 8294 1.668826 TCACTGGCCCTAAACCTGAT 58.331 50.000 0.00 0.00 0.00 2.90
4084 8334 2.173356 TCCTGATAGCACCCAGAAATGG 59.827 50.000 0.00 0.00 32.37 3.16
4086 8336 2.158696 GCTCCTGATAGCACCCAGAAAT 60.159 50.000 0.00 0.00 42.30 2.17
4265 8520 4.379243 ACTCCCTTGCCACGCGAG 62.379 66.667 15.93 4.16 39.59 5.03
4338 8610 3.252458 ACGAATTTAGACACCAGCCAAAC 59.748 43.478 0.00 0.00 0.00 2.93
4576 8883 4.040952 AGCTACTTCACACAATGAGGAAGT 59.959 41.667 17.35 17.35 42.85 3.01
4662 10008 8.132995 ACCGGTAAAAAGAAGACAATTTTACTG 58.867 33.333 4.49 16.57 46.06 2.74
4950 10336 2.777114 TGGCAATCCCAGATACTGCTAA 59.223 45.455 0.00 0.00 39.18 3.09
4962 10383 0.752658 GCCCTAAACATGGCAATCCC 59.247 55.000 0.00 0.00 0.00 3.85
4968 10389 0.965439 TGTTGTGCCCTAAACATGGC 59.035 50.000 0.00 0.00 31.52 4.40
5180 10692 3.338249 CATCACAAGGGTAGGTTCACTG 58.662 50.000 0.00 0.00 0.00 3.66
5324 10904 5.769662 TCTTTGAATACCTGCAACAGACATT 59.230 36.000 0.00 0.00 32.44 2.71
5388 10968 1.142870 TGCAGGGTAACTCTTGCTTGT 59.857 47.619 0.00 0.00 38.55 3.16
5763 11343 0.267960 GGTCTATCCCTTCCCCTGGA 59.732 60.000 0.00 0.00 34.54 3.86
5839 11419 1.867363 TCCTCCCTAGCCTTTGAGAC 58.133 55.000 0.00 0.00 0.00 3.36
6426 12009 3.016736 CCTGTTCAAACCGGCATCTAAT 58.983 45.455 0.00 0.00 0.00 1.73
6540 12123 2.749621 GGAAACATCAACAGCACCTAGG 59.250 50.000 7.41 7.41 0.00 3.02
6753 12337 4.268720 GGCAACAAACCCTCACCA 57.731 55.556 0.00 0.00 0.00 4.17
6774 12358 0.959372 CAAGGTTCTCCAGGCTGCTG 60.959 60.000 9.56 3.70 35.89 4.41
6792 12376 1.833630 ACTAGCTTACCATGCAGAGCA 59.166 47.619 12.82 0.00 44.86 4.26
6836 12420 4.321527 CCAACTTGGAGAGATTTTGAAGCC 60.322 45.833 0.92 0.00 40.96 4.35
6843 12427 7.489160 GTTTTAACACCAACTTGGAGAGATTT 58.511 34.615 15.14 0.11 40.96 2.17
6862 12446 4.320023 TGCTCCAATCTGCTACGTTTTAA 58.680 39.130 0.00 0.00 0.00 1.52
6867 12451 1.550524 TCTTGCTCCAATCTGCTACGT 59.449 47.619 0.00 0.00 0.00 3.57
6904 12491 3.518303 GCTATATTTGGTAGGACCCCGAT 59.482 47.826 0.00 0.00 37.50 4.18
6956 12543 0.541764 GAAATGGAGTTGTGCCCCCA 60.542 55.000 0.00 0.00 0.00 4.96
6961 12548 0.890683 CCCTGGAAATGGAGTTGTGC 59.109 55.000 0.00 0.00 0.00 4.57
6979 12566 1.153147 GGCTCGGGAAAGATGACCC 60.153 63.158 0.00 0.00 42.43 4.46
7000 12587 1.621317 TCTATCGAACCACAGCACCAA 59.379 47.619 0.00 0.00 0.00 3.67
7009 12596 8.509690 CCGTAGTTTATCTAATCTATCGAACCA 58.490 37.037 0.00 0.00 0.00 3.67
7010 12597 8.510505 ACCGTAGTTTATCTAATCTATCGAACC 58.489 37.037 0.00 0.00 0.00 3.62
7026 12613 3.451141 AACAACACCGACCGTAGTTTA 57.549 42.857 0.00 0.00 0.00 2.01
7029 12616 1.136695 TCAAACAACACCGACCGTAGT 59.863 47.619 0.00 0.00 0.00 2.73
7032 12619 1.011333 CTTCAAACAACACCGACCGT 58.989 50.000 0.00 0.00 0.00 4.83
7177 12767 8.806429 TTCTGCACCTCTAATATTTCATTGAA 57.194 30.769 0.00 0.00 0.00 2.69
7179 12769 8.896744 TCTTTCTGCACCTCTAATATTTCATTG 58.103 33.333 0.00 0.00 0.00 2.82
7180 12770 9.638176 ATCTTTCTGCACCTCTAATATTTCATT 57.362 29.630 0.00 0.00 0.00 2.57
7181 12771 9.064706 CATCTTTCTGCACCTCTAATATTTCAT 57.935 33.333 0.00 0.00 0.00 2.57
7182 12772 7.500227 CCATCTTTCTGCACCTCTAATATTTCA 59.500 37.037 0.00 0.00 0.00 2.69
7183 12773 7.500559 ACCATCTTTCTGCACCTCTAATATTTC 59.499 37.037 0.00 0.00 0.00 2.17
7184 12774 7.349598 ACCATCTTTCTGCACCTCTAATATTT 58.650 34.615 0.00 0.00 0.00 1.40
7185 12775 6.904626 ACCATCTTTCTGCACCTCTAATATT 58.095 36.000 0.00 0.00 0.00 1.28
7186 12776 6.506538 ACCATCTTTCTGCACCTCTAATAT 57.493 37.500 0.00 0.00 0.00 1.28
7187 12777 5.957771 ACCATCTTTCTGCACCTCTAATA 57.042 39.130 0.00 0.00 0.00 0.98
7188 12778 4.851639 ACCATCTTTCTGCACCTCTAAT 57.148 40.909 0.00 0.00 0.00 1.73
7189 12779 4.640771 AACCATCTTTCTGCACCTCTAA 57.359 40.909 0.00 0.00 0.00 2.10
7190 12780 4.530553 TGTAACCATCTTTCTGCACCTCTA 59.469 41.667 0.00 0.00 0.00 2.43
7191 12781 3.327757 TGTAACCATCTTTCTGCACCTCT 59.672 43.478 0.00 0.00 0.00 3.69
7192 12782 3.674997 TGTAACCATCTTTCTGCACCTC 58.325 45.455 0.00 0.00 0.00 3.85
7193 12783 3.327757 TCTGTAACCATCTTTCTGCACCT 59.672 43.478 0.00 0.00 0.00 4.00
7194 12784 3.674997 TCTGTAACCATCTTTCTGCACC 58.325 45.455 0.00 0.00 0.00 5.01
7195 12785 7.559590 AATATCTGTAACCATCTTTCTGCAC 57.440 36.000 0.00 0.00 0.00 4.57
7196 12786 8.264347 TGTAATATCTGTAACCATCTTTCTGCA 58.736 33.333 0.00 0.00 0.00 4.41
7197 12787 8.662781 TGTAATATCTGTAACCATCTTTCTGC 57.337 34.615 0.00 0.00 0.00 4.26
7198 12788 9.823647 ACTGTAATATCTGTAACCATCTTTCTG 57.176 33.333 0.00 0.00 0.00 3.02
7217 12807 9.461312 TCTGCACCTCAAATATTTTACTGTAAT 57.539 29.630 0.37 0.00 0.00 1.89
7218 12808 8.856153 TCTGCACCTCAAATATTTTACTGTAA 57.144 30.769 0.00 0.00 0.00 2.41
7248 12841 1.404851 GCTACCTGTCTCTCAACCTGC 60.405 57.143 0.00 0.00 0.00 4.85
7254 12847 1.032657 GCTCCGCTACCTGTCTCTCA 61.033 60.000 0.00 0.00 0.00 3.27
7260 12853 2.989824 ACGTGCTCCGCTACCTGT 60.990 61.111 0.00 0.00 41.42 4.00
7291 12884 8.736244 AGAGAGAGAGTTTAATAGTCAGTCAAC 58.264 37.037 0.00 0.00 0.00 3.18
7372 12965 5.594725 TGTATAGGAGTAGAAGGCAGAAGTG 59.405 44.000 0.00 0.00 0.00 3.16
7379 12972 4.524714 TCTGCATGTATAGGAGTAGAAGGC 59.475 45.833 0.00 0.00 0.00 4.35
7381 12974 6.098679 GCATCTGCATGTATAGGAGTAGAAG 58.901 44.000 0.00 0.00 41.59 2.85
7382 12975 6.030548 GCATCTGCATGTATAGGAGTAGAA 57.969 41.667 0.00 0.00 41.59 2.10
7398 12995 4.920640 TTACTAGTCCTACTGCATCTGC 57.079 45.455 0.00 0.00 42.50 4.26
7399 12996 6.920758 GTCAATTACTAGTCCTACTGCATCTG 59.079 42.308 0.00 0.00 0.00 2.90
7400 12997 6.238786 CGTCAATTACTAGTCCTACTGCATCT 60.239 42.308 0.00 0.00 0.00 2.90
7401 12998 5.915758 CGTCAATTACTAGTCCTACTGCATC 59.084 44.000 0.00 0.00 0.00 3.91
7402 12999 5.360144 ACGTCAATTACTAGTCCTACTGCAT 59.640 40.000 0.00 0.00 0.00 3.96
7403 13000 4.703575 ACGTCAATTACTAGTCCTACTGCA 59.296 41.667 0.00 0.00 0.00 4.41
7404 13001 5.163683 TGACGTCAATTACTAGTCCTACTGC 60.164 44.000 17.62 0.00 0.00 4.40
7424 13021 0.316772 CTGTATACGCCCGAGTGACG 60.317 60.000 0.00 0.00 42.18 4.35
7487 13104 4.083484 GGAAGTGCTATGTAGTGCGTTTTT 60.083 41.667 0.00 0.00 0.00 1.94
7555 13173 9.747898 ATACAACAAAGGAATACACAAAGGATA 57.252 29.630 0.00 0.00 0.00 2.59
7560 13178 8.472007 AGGAATACAACAAAGGAATACACAAA 57.528 30.769 0.00 0.00 0.00 2.83
7561 13179 8.472007 AAGGAATACAACAAAGGAATACACAA 57.528 30.769 0.00 0.00 0.00 3.33
7581 13199 5.261209 GCATATGGCATACAACAAAGGAA 57.739 39.130 9.83 0.00 43.97 3.36
7582 13200 4.916983 GCATATGGCATACAACAAAGGA 57.083 40.909 9.83 0.00 43.97 3.36
7605 13231 4.226427 TCATCCTGTTCTAGCTGCAATT 57.774 40.909 1.02 0.00 0.00 2.32
7621 13247 1.783031 CGGCTTCAGCTGCATCATCC 61.783 60.000 9.47 3.21 40.93 3.51
7642 13268 3.595173 AGCAAGTTGCCGTTTTCTTTTT 58.405 36.364 24.02 0.00 46.52 1.94
7643 13269 3.119137 AGAGCAAGTTGCCGTTTTCTTTT 60.119 39.130 24.02 1.14 46.52 2.27
7644 13270 2.427095 AGAGCAAGTTGCCGTTTTCTTT 59.573 40.909 24.02 1.94 46.52 2.52
7645 13271 2.024414 AGAGCAAGTTGCCGTTTTCTT 58.976 42.857 24.02 2.73 46.52 2.52
7646 13272 1.334869 CAGAGCAAGTTGCCGTTTTCT 59.665 47.619 24.02 16.35 46.52 2.52
7647 13273 1.065551 ACAGAGCAAGTTGCCGTTTTC 59.934 47.619 24.02 14.34 46.52 2.29
7648 13274 1.102978 ACAGAGCAAGTTGCCGTTTT 58.897 45.000 24.02 5.15 46.52 2.43
7649 13275 1.065551 GAACAGAGCAAGTTGCCGTTT 59.934 47.619 24.02 12.13 46.52 3.60
7650 13276 0.663153 GAACAGAGCAAGTTGCCGTT 59.337 50.000 24.02 22.42 46.52 4.44
7651 13277 1.166531 GGAACAGAGCAAGTTGCCGT 61.167 55.000 24.02 15.72 46.52 5.68
7652 13278 1.165907 TGGAACAGAGCAAGTTGCCG 61.166 55.000 24.02 15.08 46.52 5.69
7653 13279 1.032014 TTGGAACAGAGCAAGTTGCC 58.968 50.000 24.02 15.18 42.73 4.52
7654 13280 2.869233 TTTGGAACAGAGCAAGTTGC 57.131 45.000 20.44 20.44 42.19 4.17
7655 13281 4.637483 TCTTTTGGAACAGAGCAAGTTG 57.363 40.909 0.00 0.00 42.39 3.16
7656 13282 4.949856 TCTTCTTTTGGAACAGAGCAAGTT 59.050 37.500 0.00 0.00 42.39 2.66
7657 13283 4.526970 TCTTCTTTTGGAACAGAGCAAGT 58.473 39.130 0.00 0.00 42.39 3.16
7658 13284 4.023365 CCTCTTCTTTTGGAACAGAGCAAG 60.023 45.833 0.00 0.00 42.39 4.01
7659 13285 3.885297 CCTCTTCTTTTGGAACAGAGCAA 59.115 43.478 0.00 0.00 42.39 3.91
7660 13286 3.480470 CCTCTTCTTTTGGAACAGAGCA 58.520 45.455 0.00 0.00 42.39 4.26
7661 13287 2.816672 CCCTCTTCTTTTGGAACAGAGC 59.183 50.000 0.00 0.00 42.39 4.09
7662 13288 4.357918 TCCCTCTTCTTTTGGAACAGAG 57.642 45.455 0.00 0.00 42.39 3.35
7663 13289 6.448369 TTATCCCTCTTCTTTTGGAACAGA 57.552 37.500 0.00 0.00 42.39 3.41
7664 13290 7.829211 TGTATTATCCCTCTTCTTTTGGAACAG 59.171 37.037 0.00 0.00 42.39 3.16
7665 13291 7.695055 TGTATTATCCCTCTTCTTTTGGAACA 58.305 34.615 0.00 0.00 0.00 3.18
7666 13292 8.753497 ATGTATTATCCCTCTTCTTTTGGAAC 57.247 34.615 0.00 0.00 0.00 3.62
7667 13293 8.556589 TGATGTATTATCCCTCTTCTTTTGGAA 58.443 33.333 0.00 0.00 0.00 3.53
7668 13294 7.993183 GTGATGTATTATCCCTCTTCTTTTGGA 59.007 37.037 0.00 0.00 0.00 3.53
7682 13308 6.976349 TGTGTTACCGACTGTGATGTATTATC 59.024 38.462 0.00 0.00 0.00 1.75
7683 13309 6.869695 TGTGTTACCGACTGTGATGTATTAT 58.130 36.000 0.00 0.00 0.00 1.28
7684 13310 6.270156 TGTGTTACCGACTGTGATGTATTA 57.730 37.500 0.00 0.00 0.00 0.98
7717 13343 2.423538 ACATGGTTAATCTTGAAGCGGC 59.576 45.455 8.50 0.00 0.00 6.53
7719 13345 4.260212 CCGTACATGGTTAATCTTGAAGCG 60.260 45.833 8.50 8.67 0.00 4.68
7721 13347 4.035208 GCCCGTACATGGTTAATCTTGAAG 59.965 45.833 8.50 0.00 0.00 3.02
7732 13358 0.605319 CTGTTGTGCCCGTACATGGT 60.605 55.000 0.00 0.00 0.00 3.55
7743 13369 6.618287 TTATACATGGCTAATCTGTTGTGC 57.382 37.500 0.00 0.00 0.00 4.57
7745 13371 9.494271 CTGTATTATACATGGCTAATCTGTTGT 57.506 33.333 5.46 0.00 38.15 3.32
7748 13374 7.311297 CCCCTGTATTATACATGGCTAATCTGT 60.311 40.741 17.56 0.00 41.43 3.41
7752 13378 5.755849 GCCCCTGTATTATACATGGCTAAT 58.244 41.667 25.69 2.65 45.54 1.73
7754 13380 4.837093 GCCCCTGTATTATACATGGCTA 57.163 45.455 25.69 0.00 45.54 3.93
7755 13381 3.721087 GCCCCTGTATTATACATGGCT 57.279 47.619 25.69 0.00 45.54 4.75
7757 13383 6.009589 TCAATTGCCCCTGTATTATACATGG 58.990 40.000 16.47 16.47 42.13 3.66
7758 13384 6.716628 AGTCAATTGCCCCTGTATTATACATG 59.283 38.462 5.46 3.26 38.15 3.21
7760 13386 6.101150 AGAGTCAATTGCCCCTGTATTATACA 59.899 38.462 4.89 4.89 37.13 2.29
7761 13387 6.534634 AGAGTCAATTGCCCCTGTATTATAC 58.465 40.000 0.00 0.00 0.00 1.47
7762 13388 6.558775 AGAGAGTCAATTGCCCCTGTATTATA 59.441 38.462 0.00 0.00 0.00 0.98
7763 13389 5.370880 AGAGAGTCAATTGCCCCTGTATTAT 59.629 40.000 0.00 0.00 0.00 1.28
7764 13390 4.721776 AGAGAGTCAATTGCCCCTGTATTA 59.278 41.667 0.00 0.00 0.00 0.98
7766 13392 3.118531 AGAGAGTCAATTGCCCCTGTAT 58.881 45.455 0.00 0.00 0.00 2.29
7767 13393 2.501723 GAGAGAGTCAATTGCCCCTGTA 59.498 50.000 0.00 0.00 0.00 2.74
7769 13395 1.280133 TGAGAGAGTCAATTGCCCCTG 59.720 52.381 0.00 0.00 29.64 4.45
7770 13396 1.280421 GTGAGAGAGTCAATTGCCCCT 59.720 52.381 0.00 0.00 36.74 4.79
7771 13397 1.003580 TGTGAGAGAGTCAATTGCCCC 59.996 52.381 0.00 0.00 36.74 5.80
7772 13398 2.354259 CTGTGAGAGAGTCAATTGCCC 58.646 52.381 0.00 0.00 36.74 5.36
7773 13399 1.736681 GCTGTGAGAGAGTCAATTGCC 59.263 52.381 0.00 0.00 36.74 4.52
7774 13400 1.736681 GGCTGTGAGAGAGTCAATTGC 59.263 52.381 0.00 0.00 36.74 3.56
7777 13403 3.106054 AGATGGCTGTGAGAGAGTCAAT 58.894 45.455 0.00 0.00 36.74 2.57
7778 13404 2.495270 GAGATGGCTGTGAGAGAGTCAA 59.505 50.000 0.00 0.00 36.74 3.18
7779 13405 2.098614 GAGATGGCTGTGAGAGAGTCA 58.901 52.381 0.00 0.00 0.00 3.41
7832 14460 2.158885 TCAGTGTCGGGAACAAACATGA 60.159 45.455 0.00 0.00 40.31 3.07
7833 14461 2.217750 TCAGTGTCGGGAACAAACATG 58.782 47.619 0.00 0.00 40.31 3.21
7841 14469 7.989416 AAATAGTAAAATTCAGTGTCGGGAA 57.011 32.000 0.00 0.00 0.00 3.97
7866 14494 5.299531 GCCACCAGAGAAAAAGAAAGTAGTT 59.700 40.000 0.00 0.00 0.00 2.24
7875 14503 2.294512 GGAGTTGCCACCAGAGAAAAAG 59.705 50.000 0.00 0.00 36.34 2.27
7877 14505 1.813862 CGGAGTTGCCACCAGAGAAAA 60.814 52.381 0.00 0.00 35.94 2.29
7879 14507 1.371183 CGGAGTTGCCACCAGAGAA 59.629 57.895 0.00 0.00 35.94 2.87
7883 14511 2.358737 GTCCGGAGTTGCCACCAG 60.359 66.667 3.06 0.00 35.94 4.00
7884 14512 1.122632 TAAGTCCGGAGTTGCCACCA 61.123 55.000 30.79 10.10 35.94 4.17
7885 14513 0.252197 ATAAGTCCGGAGTTGCCACC 59.748 55.000 30.79 5.54 35.94 4.61
7887 14515 0.981183 ACATAAGTCCGGAGTTGCCA 59.019 50.000 30.79 14.45 35.94 4.92
7888 14516 1.066430 TCACATAAGTCCGGAGTTGCC 60.066 52.381 30.79 7.88 0.00 4.52
7889 14517 2.000447 GTCACATAAGTCCGGAGTTGC 59.000 52.381 30.79 8.28 0.00 4.17
7890 14518 3.594603 AGTCACATAAGTCCGGAGTTG 57.405 47.619 30.79 20.05 0.00 3.16
7891 14519 4.618920 AAAGTCACATAAGTCCGGAGTT 57.381 40.909 27.01 27.01 0.00 3.01
7892 14520 4.039973 TGAAAAGTCACATAAGTCCGGAGT 59.960 41.667 3.06 4.57 0.00 3.85
7893 14521 4.566004 TGAAAAGTCACATAAGTCCGGAG 58.434 43.478 3.06 0.00 0.00 4.63
7894 14522 4.610605 TGAAAAGTCACATAAGTCCGGA 57.389 40.909 0.00 0.00 0.00 5.14
7897 14525 7.860872 ACGAAAATTGAAAAGTCACATAAGTCC 59.139 33.333 0.00 0.00 31.90 3.85
7898 14526 8.782533 ACGAAAATTGAAAAGTCACATAAGTC 57.217 30.769 0.00 0.00 31.90 3.01
7899 14527 9.581099 AAACGAAAATTGAAAAGTCACATAAGT 57.419 25.926 0.00 0.00 31.90 2.24
7902 14530 8.738554 CGAAAACGAAAATTGAAAAGTCACATA 58.261 29.630 0.00 0.00 31.90 2.29
7904 14532 6.034044 CCGAAAACGAAAATTGAAAAGTCACA 59.966 34.615 0.00 0.00 31.90 3.58
7905 14533 6.251801 TCCGAAAACGAAAATTGAAAAGTCAC 59.748 34.615 0.00 0.00 31.90 3.67
7906 14534 6.323266 TCCGAAAACGAAAATTGAAAAGTCA 58.677 32.000 0.00 0.00 0.00 3.41
7907 14535 6.799786 TCCGAAAACGAAAATTGAAAAGTC 57.200 33.333 0.00 0.00 0.00 3.01
7908 14536 6.035220 GGTTCCGAAAACGAAAATTGAAAAGT 59.965 34.615 0.00 0.00 0.00 2.66
7909 14537 6.407623 GGTTCCGAAAACGAAAATTGAAAAG 58.592 36.000 0.00 0.00 0.00 2.27
7911 14539 4.804665 GGGTTCCGAAAACGAAAATTGAAA 59.195 37.500 0.00 0.00 0.00 2.69
7912 14540 4.142227 TGGGTTCCGAAAACGAAAATTGAA 60.142 37.500 0.00 0.00 0.00 2.69
7913 14541 3.380637 TGGGTTCCGAAAACGAAAATTGA 59.619 39.130 0.00 0.00 0.00 2.57
7914 14542 3.487942 GTGGGTTCCGAAAACGAAAATTG 59.512 43.478 0.00 0.00 0.00 2.32
7915 14543 3.382227 AGTGGGTTCCGAAAACGAAAATT 59.618 39.130 0.00 0.00 0.00 1.82
7916 14544 2.953648 AGTGGGTTCCGAAAACGAAAAT 59.046 40.909 0.00 0.00 0.00 1.82
7917 14545 2.097791 CAGTGGGTTCCGAAAACGAAAA 59.902 45.455 0.00 0.00 0.00 2.29
7919 14547 1.301423 CAGTGGGTTCCGAAAACGAA 58.699 50.000 0.00 0.00 0.00 3.85
7920 14548 1.161563 GCAGTGGGTTCCGAAAACGA 61.162 55.000 0.00 0.00 0.00 3.85
7921 14549 1.281656 GCAGTGGGTTCCGAAAACG 59.718 57.895 0.00 0.00 0.00 3.60
7922 14550 0.030235 GTGCAGTGGGTTCCGAAAAC 59.970 55.000 0.00 0.00 0.00 2.43
7923 14551 0.106918 AGTGCAGTGGGTTCCGAAAA 60.107 50.000 0.00 0.00 0.00 2.29
7924 14552 0.106918 AAGTGCAGTGGGTTCCGAAA 60.107 50.000 0.00 0.00 0.00 3.46
7925 14553 0.759959 TAAGTGCAGTGGGTTCCGAA 59.240 50.000 0.00 0.00 0.00 4.30
7926 14554 0.320374 CTAAGTGCAGTGGGTTCCGA 59.680 55.000 0.00 0.00 0.00 4.55
7927 14555 1.298859 GCTAAGTGCAGTGGGTTCCG 61.299 60.000 0.00 0.00 42.31 4.30
7928 14556 2.556286 GCTAAGTGCAGTGGGTTCC 58.444 57.895 0.00 0.00 42.31 3.62
7959 14587 3.243501 GCTGAACTTGAAAACTGCATCCA 60.244 43.478 0.00 0.00 0.00 3.41
7994 14623 4.504097 CGATGATACGATGACAGAAAGCAA 59.496 41.667 0.00 0.00 35.09 3.91
8002 14631 1.036707 TGCCCGATGATACGATGACA 58.963 50.000 0.00 0.00 35.09 3.58
8006 14635 1.270785 TGCAATGCCCGATGATACGAT 60.271 47.619 1.53 0.00 35.09 3.73
8008 14637 0.514255 CTGCAATGCCCGATGATACG 59.486 55.000 1.53 0.00 0.00 3.06
8015 14644 3.565961 TTCCAGCTGCAATGCCCGA 62.566 57.895 8.66 0.00 0.00 5.14
8038 14667 0.038892 CACAACAGCCAGCCAACATC 60.039 55.000 0.00 0.00 0.00 3.06
8045 14674 2.952245 CAGAGCACAACAGCCAGC 59.048 61.111 0.00 0.00 34.23 4.85
8047 14676 0.108396 TTAGCAGAGCACAACAGCCA 59.892 50.000 0.00 0.00 34.23 4.75
8106 14735 7.070074 CCATACCTAAGTAAATGGACTCTGTCT 59.930 40.741 0.00 0.00 32.42 3.41
8144 14779 2.022129 ACTTCGGTTCAGCGCTTCG 61.022 57.895 7.50 10.12 0.00 3.79
8145 14780 1.493311 CACTTCGGTTCAGCGCTTC 59.507 57.895 7.50 0.52 0.00 3.86
8171 14806 1.160329 ACGCAGCAACTGAGACAACC 61.160 55.000 5.32 0.00 34.97 3.77
8172 14807 0.041839 CACGCAGCAACTGAGACAAC 60.042 55.000 5.32 0.00 34.97 3.32
8175 14810 1.287730 CCTCACGCAGCAACTGAGAC 61.288 60.000 11.69 0.00 34.97 3.36
8176 14811 1.005748 CCTCACGCAGCAACTGAGA 60.006 57.895 11.69 0.00 34.97 3.27
8177 14812 2.675056 GCCTCACGCAGCAACTGAG 61.675 63.158 0.00 0.00 37.31 3.35
8178 14813 2.666190 GCCTCACGCAGCAACTGA 60.666 61.111 0.00 0.00 37.47 3.41
8179 14814 4.081030 CGCCTCACGCAGCAACTG 62.081 66.667 0.00 0.00 37.30 3.16
8239 14874 5.603170 AAATGTATCTGCCCATCCTTTTG 57.397 39.130 0.00 0.00 0.00 2.44
8244 14879 8.409358 AACTTAATAAATGTATCTGCCCATCC 57.591 34.615 0.00 0.00 0.00 3.51
8245 14880 8.515414 GGAACTTAATAAATGTATCTGCCCATC 58.485 37.037 0.00 0.00 0.00 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.