Multiple sequence alignment - TraesCS6D01G028000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G028000 chr6D 100.000 5757 0 0 1 5757 10696188 10701944 0.000000e+00 10632.0
1 TraesCS6D01G028000 chr6D 94.124 902 47 2 2708 3608 362997577 362998473 0.000000e+00 1367.0
2 TraesCS6D01G028000 chr6D 96.296 54 2 0 356 409 10696512 10696565 7.950000e-14 89.8
3 TraesCS6D01G028000 chr6D 96.296 54 2 0 325 378 10696543 10696596 7.950000e-14 89.8
4 TraesCS6D01G028000 chr6B 92.208 2464 119 28 2641 5066 20011195 20013623 0.000000e+00 3419.0
5 TraesCS6D01G028000 chr6B 90.857 700 43 9 1876 2555 20010335 20011033 0.000000e+00 918.0
6 TraesCS6D01G028000 chr6B 91.734 617 43 6 2641 3254 134851160 134851771 0.000000e+00 850.0
7 TraesCS6D01G028000 chr6B 87.226 548 45 10 2026 2555 134850405 134850945 8.250000e-168 601.0
8 TraesCS6D01G028000 chr6B 83.831 402 33 15 1049 1450 505322642 505323011 2.550000e-93 353.0
9 TraesCS6D01G028000 chr6B 89.912 228 22 1 5178 5404 20013740 20013967 5.640000e-75 292.0
10 TraesCS6D01G028000 chr6B 84.967 306 17 14 830 1107 20009156 20009460 3.400000e-72 283.0
11 TraesCS6D01G028000 chr6B 77.528 356 43 19 1316 1641 20009821 20010169 4.580000e-41 180.0
12 TraesCS6D01G028000 chr6B 89.928 139 12 1 1697 1833 505323698 505323836 1.650000e-40 178.0
13 TraesCS6D01G028000 chr6B 87.500 120 13 1 1716 1833 59505470 59505351 2.800000e-28 137.0
14 TraesCS6D01G028000 chr6B 89.320 103 8 2 1877 1977 505323843 505323944 6.060000e-25 126.0
15 TraesCS6D01G028000 chr6B 82.105 95 10 6 1611 1704 505323653 505323741 2.220000e-09 75.0
16 TraesCS6D01G028000 chr6B 86.765 68 5 1 318 381 20008699 20008766 8.000000e-09 73.1
17 TraesCS6D01G028000 chr6B 92.683 41 1 1 2588 2626 134850981 134851021 2.240000e-04 58.4
18 TraesCS6D01G028000 chr6B 100.000 30 0 0 1645 1674 505323725 505323754 8.060000e-04 56.5
19 TraesCS6D01G028000 chr6A 91.326 1787 103 28 3119 4878 12285830 12287591 0.000000e+00 2394.0
20 TraesCS6D01G028000 chr6A 92.519 1203 62 15 356 1546 12283010 12284196 0.000000e+00 1698.0
21 TraesCS6D01G028000 chr6A 90.874 1030 64 10 1546 2555 12284229 12285248 0.000000e+00 1354.0
22 TraesCS6D01G028000 chr6A 93.455 382 23 2 1 381 12282686 12283066 3.010000e-157 566.0
23 TraesCS6D01G028000 chr6A 91.484 411 17 8 2641 3050 12285423 12285816 3.030000e-152 549.0
24 TraesCS6D01G028000 chr6A 93.640 283 15 3 5475 5755 12288774 12289055 2.480000e-113 420.0
25 TraesCS6D01G028000 chr6A 84.856 416 34 14 5153 5549 12287822 12288227 5.410000e-105 392.0
26 TraesCS6D01G028000 chr6A 91.613 155 9 2 4913 5066 12287591 12287742 1.630000e-50 211.0
27 TraesCS6D01G028000 chr6A 98.148 54 1 0 5068 5121 12287780 12287833 1.710000e-15 95.3
28 TraesCS6D01G028000 chr6A 98.077 52 1 0 2575 2626 12285233 12285284 2.210000e-14 91.6
29 TraesCS6D01G028000 chr3D 93.018 974 49 7 2641 3608 553183027 553183987 0.000000e+00 1404.0
30 TraesCS6D01G028000 chr3D 86.240 625 62 8 2026 2630 553182272 553182892 0.000000e+00 656.0
31 TraesCS6D01G028000 chr3D 93.220 59 3 1 2575 2633 553182799 553182856 1.030000e-12 86.1
32 TraesCS6D01G028000 chr1D 92.923 975 50 7 2641 3608 441650582 441649620 0.000000e+00 1400.0
33 TraesCS6D01G028000 chr1D 86.080 625 63 8 2026 2630 441651337 441650717 0.000000e+00 651.0
34 TraesCS6D01G028000 chr1D 93.220 59 3 1 2575 2633 441650810 441650753 1.030000e-12 86.1
35 TraesCS6D01G028000 chr7A 92.695 616 35 7 2643 3254 226157218 226157827 0.000000e+00 880.0
36 TraesCS6D01G028000 chr7A 89.440 464 41 6 2026 2486 226156482 226156940 3.870000e-161 579.0
37 TraesCS6D01G028000 chr7B 90.126 557 40 7 2641 3191 729392428 729391881 0.000000e+00 710.0
38 TraesCS6D01G028000 chr7B 85.692 629 61 14 2026 2633 729393181 729392561 2.260000e-178 636.0
39 TraesCS6D01G028000 chr7B 96.154 52 2 0 3203 3254 729391894 729391843 1.030000e-12 86.1
40 TraesCS6D01G028000 chr7D 88.469 503 32 11 1049 1548 2750066 2749587 8.310000e-163 584.0
41 TraesCS6D01G028000 chr7D 86.826 501 41 11 1049 1548 629750384 629749908 2.360000e-148 536.0
42 TraesCS6D01G028000 chr7D 92.424 132 8 1 1704 1833 2749454 2749323 2.740000e-43 187.0
43 TraesCS6D01G028000 chr7D 91.667 132 9 1 1704 1833 629749774 629749643 1.270000e-41 182.0
44 TraesCS6D01G028000 chr7D 84.043 94 15 0 2950 3043 378489590 378489683 2.210000e-14 91.6
45 TraesCS6D01G028000 chr7D 100.000 30 0 0 1645 1674 2749434 2749405 8.060000e-04 56.5
46 TraesCS6D01G028000 chr7D 100.000 30 0 0 1645 1674 629749754 629749725 8.060000e-04 56.5
47 TraesCS6D01G028000 chr2D 87.078 503 44 9 1049 1548 53043534 53043050 3.030000e-152 549.0
48 TraesCS6D01G028000 chr2D 91.667 132 9 1 1704 1833 53042916 53042785 1.270000e-41 182.0
49 TraesCS6D01G028000 chr2D 91.089 101 8 1 1877 1977 53042778 53042679 1.010000e-27 135.0
50 TraesCS6D01G028000 chr2D 100.000 30 0 0 1645 1674 53042896 53042867 8.060000e-04 56.5
51 TraesCS6D01G028000 chr5D 81.086 571 55 27 1157 1704 249071893 249071353 1.930000e-109 407.0
52 TraesCS6D01G028000 chr5D 92.424 132 8 1 1704 1833 249071389 249071258 2.740000e-43 187.0
53 TraesCS6D01G028000 chr5D 89.524 105 10 1 1877 1981 249071251 249071148 1.300000e-26 132.0
54 TraesCS6D01G028000 chr5D 100.000 30 0 0 1645 1674 249071369 249071340 8.060000e-04 56.5
55 TraesCS6D01G028000 chr4B 81.121 339 36 11 1115 1444 191009821 191009502 4.460000e-61 246.0
56 TraesCS6D01G028000 chr4B 90.291 103 9 1 1878 1980 191009220 191009119 3.620000e-27 134.0
57 TraesCS6D01G028000 chr4B 94.595 37 0 1 1799 1833 191009264 191009228 8.060000e-04 56.5
58 TraesCS6D01G028000 chr3A 91.096 146 9 2 1372 1517 480634567 480634708 1.640000e-45 195.0
59 TraesCS6D01G028000 chr3A 90.152 132 11 1 1704 1833 480634784 480634915 2.760000e-38 171.0
60 TraesCS6D01G028000 chr3A 90.099 101 9 1 1877 1977 480634922 480635021 4.680000e-26 130.0
61 TraesCS6D01G028000 chr2B 90.099 101 9 1 1880 1980 737676665 737676566 4.680000e-26 130.0
62 TraesCS6D01G028000 chr1A 89.423 104 10 1 1877 1980 9482329 9482227 4.680000e-26 130.0
63 TraesCS6D01G028000 chr1A 100.000 30 0 0 1645 1674 9482447 9482418 8.060000e-04 56.5
64 TraesCS6D01G028000 chrUn 100.000 30 0 0 1645 1674 276692617 276692646 8.060000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G028000 chr6D 10696188 10701944 5756 False 10632.000000 10632 100.000000 1 5757 1 chr6D.!!$F1 5756
1 TraesCS6D01G028000 chr6D 362997577 362998473 896 False 1367.000000 1367 94.124000 2708 3608 1 chr6D.!!$F2 900
2 TraesCS6D01G028000 chr6B 20008699 20013967 5268 False 860.850000 3419 87.039500 318 5404 6 chr6B.!!$F1 5086
3 TraesCS6D01G028000 chr6B 134850405 134851771 1366 False 503.133333 850 90.547667 2026 3254 3 chr6B.!!$F2 1228
4 TraesCS6D01G028000 chr6A 12282686 12289055 6369 False 777.090000 2394 92.599200 1 5755 10 chr6A.!!$F1 5754
5 TraesCS6D01G028000 chr3D 553182272 553183987 1715 False 715.366667 1404 90.826000 2026 3608 3 chr3D.!!$F1 1582
6 TraesCS6D01G028000 chr1D 441649620 441651337 1717 True 712.366667 1400 90.741000 2026 3608 3 chr1D.!!$R1 1582
7 TraesCS6D01G028000 chr7A 226156482 226157827 1345 False 729.500000 880 91.067500 2026 3254 2 chr7A.!!$F1 1228
8 TraesCS6D01G028000 chr7B 729391843 729393181 1338 True 477.366667 710 90.657333 2026 3254 3 chr7B.!!$R1 1228
9 TraesCS6D01G028000 chr7D 2749323 2750066 743 True 275.833333 584 93.631000 1049 1833 3 chr7D.!!$R1 784
10 TraesCS6D01G028000 chr7D 629749643 629750384 741 True 258.166667 536 92.831000 1049 1833 3 chr7D.!!$R2 784
11 TraesCS6D01G028000 chr2D 53042679 53043534 855 True 230.625000 549 92.458500 1049 1977 4 chr2D.!!$R1 928

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
824 844 0.101219 GATGGTCACCCGTACGGTAC 59.899 60.000 31.24 24.01 46.14 3.34 F
884 907 0.468214 CGACCAGATAGGAGGAGGCA 60.468 60.000 0.00 0.00 41.22 4.75 F
1450 1690 0.692419 AATCTGCTCCCTGATCCGGT 60.692 55.000 0.00 0.00 0.00 5.28 F
1766 2066 1.020861 TGCTAGCCACACGCATCTTG 61.021 55.000 13.29 0.00 41.38 3.02 F
2121 2428 1.180029 CCCATTTTGTCTGGGCTGAG 58.820 55.000 0.00 0.00 46.62 3.35 F
2529 2853 1.224069 CCCTGACACTGCTGACAACG 61.224 60.000 0.00 0.00 0.00 4.10 F
2626 2992 2.149578 GTTCAAGCTCACAGTCATGCT 58.850 47.619 0.00 0.00 37.37 3.79 F
4411 4931 0.106708 TGTTGCTTCTTCAGACGGCT 59.893 50.000 0.00 0.00 0.00 5.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1766 2066 0.675633 AACACATGGGAGCACTTTGC 59.324 50.000 0.00 0.0 45.46 3.68 R
2505 2829 1.228063 CAGCAGTGTCAGGGCAACT 60.228 57.895 0.00 0.0 0.00 3.16 R
2699 3191 1.410517 AGATCGTCAGGCATGGTGTAG 59.589 52.381 0.00 0.0 0.00 2.74 R
2702 3194 1.683385 TCTAGATCGTCAGGCATGGTG 59.317 52.381 0.00 0.0 0.00 4.17 R
3804 4308 1.134128 TGTGCAAGTGCTCTCTCCAAA 60.134 47.619 4.69 0.0 42.66 3.28 R
4329 4847 0.179009 ATGATCCAATGGGGCAGACG 60.179 55.000 0.00 0.0 36.21 4.18 R
4603 5138 1.675310 CACCAGCAAGATCCCGCAA 60.675 57.895 6.72 0.0 0.00 4.85 R
5715 6950 0.248012 TCCTCGTGTGTGTGTGTGTT 59.752 50.000 0.00 0.0 0.00 3.32 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 5.278071 CCGAAGTTTTAGTAAACACATGGCA 60.278 40.000 0.00 0.00 44.88 4.92
173 174 3.143010 CGAAGCTAGGGTGGGGATA 57.857 57.895 0.00 0.00 0.00 2.59
178 179 1.152312 CTAGGGTGGGGATAGCGGT 60.152 63.158 0.00 0.00 0.00 5.68
180 181 0.113776 TAGGGTGGGGATAGCGGTAG 59.886 60.000 0.00 0.00 0.00 3.18
198 200 0.543749 AGAGCTAGGCAATGGTGGTC 59.456 55.000 0.00 0.00 0.00 4.02
206 208 1.501169 GCAATGGTGGTCAAACAAGC 58.499 50.000 0.00 0.00 0.00 4.01
233 235 1.412343 GTGAGAGGAAGAGGGCAGATC 59.588 57.143 0.00 0.00 0.00 2.75
235 237 0.758685 AGAGGAAGAGGGCAGATCGG 60.759 60.000 0.00 0.00 0.00 4.18
238 240 2.688666 AAGAGGGCAGATCGGGCA 60.689 61.111 20.33 0.00 34.52 5.36
269 271 1.908619 ACATTTGAAGGGATTTGGGGC 59.091 47.619 0.00 0.00 0.00 5.80
275 277 3.739613 GGGATTTGGGGCGGGTCT 61.740 66.667 0.00 0.00 0.00 3.85
309 311 3.463690 CGTGTTGTACGCGTCCGG 61.464 66.667 18.63 0.00 46.92 5.14
332 334 0.842905 TGCCCAAGCTACCCCAAGTA 60.843 55.000 0.00 0.00 40.80 2.24
355 361 2.992089 CCACATATGGGTCAGTCGC 58.008 57.895 7.80 0.00 43.04 5.19
356 362 0.532862 CCACATATGGGTCAGTCGCC 60.533 60.000 7.80 0.00 43.04 5.54
357 363 0.532862 CACATATGGGTCAGTCGCCC 60.533 60.000 7.80 0.00 46.26 6.13
358 364 1.071471 CATATGGGTCAGTCGCCCC 59.929 63.158 0.00 0.00 45.49 5.80
362 368 2.355115 GGGTCAGTCGCCCCAAAT 59.645 61.111 0.00 0.00 40.88 2.32
363 369 1.304134 GGGTCAGTCGCCCCAAATT 60.304 57.895 0.00 0.00 40.88 1.82
364 370 1.313091 GGGTCAGTCGCCCCAAATTC 61.313 60.000 0.00 0.00 40.88 2.17
365 371 1.644786 GGTCAGTCGCCCCAAATTCG 61.645 60.000 0.00 0.00 0.00 3.34
366 372 2.038269 TCAGTCGCCCCAAATTCGC 61.038 57.895 0.00 0.00 0.00 4.70
367 373 2.040544 CAGTCGCCCCAAATTCGCT 61.041 57.895 0.00 0.00 0.00 4.93
368 374 1.745489 AGTCGCCCCAAATTCGCTC 60.745 57.895 0.00 0.00 0.00 5.03
369 375 2.437716 TCGCCCCAAATTCGCTCC 60.438 61.111 0.00 0.00 0.00 4.70
370 376 2.749839 CGCCCCAAATTCGCTCCA 60.750 61.111 0.00 0.00 0.00 3.86
371 377 2.885113 GCCCCAAATTCGCTCCAC 59.115 61.111 0.00 0.00 0.00 4.02
372 378 1.976474 GCCCCAAATTCGCTCCACA 60.976 57.895 0.00 0.00 0.00 4.17
373 379 1.322538 GCCCCAAATTCGCTCCACAT 61.323 55.000 0.00 0.00 0.00 3.21
374 380 2.021723 GCCCCAAATTCGCTCCACATA 61.022 52.381 0.00 0.00 0.00 2.29
375 381 2.586425 CCCCAAATTCGCTCCACATAT 58.414 47.619 0.00 0.00 0.00 1.78
376 382 2.294233 CCCCAAATTCGCTCCACATATG 59.706 50.000 0.00 0.00 0.00 1.78
427 433 1.084289 GATCGGGTTTGAAGGTTCGG 58.916 55.000 0.00 0.00 0.00 4.30
441 449 0.935196 GTTCGGTTGGATGGCGATAC 59.065 55.000 0.00 0.00 0.00 2.24
490 498 0.254299 AATGGGATGGAGAGGGGGTT 60.254 55.000 0.00 0.00 0.00 4.11
499 507 2.090380 TGGAGAGGGGGTTCGGTATAAT 60.090 50.000 0.00 0.00 0.00 1.28
546 555 7.753132 TCGTGCCAACTTTAAGCTTATTTTATG 59.247 33.333 7.08 3.79 0.00 1.90
572 581 7.836842 AGCCAAAAATGACGGAAAATAGTAAT 58.163 30.769 0.00 0.00 0.00 1.89
573 582 8.962679 AGCCAAAAATGACGGAAAATAGTAATA 58.037 29.630 0.00 0.00 0.00 0.98
660 669 2.223947 GGTGCGGATTGGTTGACTTTTT 60.224 45.455 0.00 0.00 0.00 1.94
756 771 1.516453 CACACAAACGTTCGCAAATGG 59.484 47.619 0.00 0.00 0.00 3.16
763 778 0.447406 CGTTCGCAAATGGCATCTCA 59.553 50.000 0.00 0.00 45.17 3.27
811 831 1.604438 GCCAACCCAAAAACGATGGTC 60.604 52.381 0.00 0.00 36.14 4.02
821 841 2.103538 CGATGGTCACCCGTACGG 59.896 66.667 27.68 27.68 37.81 4.02
823 843 1.375853 CGATGGTCACCCGTACGGTA 61.376 60.000 31.24 14.73 46.14 4.02
824 844 0.101219 GATGGTCACCCGTACGGTAC 59.899 60.000 31.24 24.01 46.14 3.34
825 845 0.611618 ATGGTCACCCGTACGGTACA 60.612 55.000 31.24 21.22 46.14 2.90
827 847 1.212751 GTCACCCGTACGGTACACC 59.787 63.158 31.24 12.30 46.14 4.16
852 872 1.078848 GACAGCTGTCGCCTTCCAT 60.079 57.895 29.84 0.00 35.12 3.41
884 907 0.468214 CGACCAGATAGGAGGAGGCA 60.468 60.000 0.00 0.00 41.22 4.75
918 941 4.657824 ACGGTCACCCACGCGAAG 62.658 66.667 15.93 4.40 0.00 3.79
953 1012 2.683933 TCTCCAACCTCCTCCGCC 60.684 66.667 0.00 0.00 0.00 6.13
954 1013 3.003173 CTCCAACCTCCTCCGCCA 61.003 66.667 0.00 0.00 0.00 5.69
956 1015 4.410400 CCAACCTCCTCCGCCACC 62.410 72.222 0.00 0.00 0.00 4.61
957 1016 4.760047 CAACCTCCTCCGCCACCG 62.760 72.222 0.00 0.00 0.00 4.94
1014 1073 4.778143 GCAATGGACGGCGGAGGT 62.778 66.667 13.24 0.00 0.00 3.85
1221 1280 2.805353 CTCGACAAGGTCCGCGTG 60.805 66.667 4.92 0.00 0.00 5.34
1441 1680 1.599240 GGCATCGGAATCTGCTCCC 60.599 63.158 2.47 0.00 38.45 4.30
1450 1690 0.692419 AATCTGCTCCCTGATCCGGT 60.692 55.000 0.00 0.00 0.00 5.28
1548 1835 1.735376 GCTGGATGCTGGCCAATCAG 61.735 60.000 17.31 14.96 38.95 2.90
1641 1933 1.318576 GCTAACACCAACCTTGCAGT 58.681 50.000 0.00 0.00 0.00 4.40
1692 1984 7.300556 TGCTAGAGATTATTCATCTGAAGCT 57.699 36.000 12.71 0.00 42.92 3.74
1694 1986 8.522003 TGCTAGAGATTATTCATCTGAAGCTAG 58.478 37.037 12.71 0.00 42.92 3.42
1695 1987 8.739039 GCTAGAGATTATTCATCTGAAGCTAGA 58.261 37.037 0.00 0.00 42.92 2.43
1730 2024 5.065731 CCCAGAATTGTTCATCTGAAGCTAC 59.934 44.000 4.43 0.00 44.64 3.58
1766 2066 1.020861 TGCTAGCCACACGCATCTTG 61.021 55.000 13.29 0.00 41.38 3.02
1796 2096 6.926272 GTGCTCCCATGTGTTTATTGTTTTAA 59.074 34.615 0.00 0.00 0.00 1.52
1834 2135 4.837896 TGTTTCGGCATGTACAAATGAA 57.162 36.364 0.00 0.00 0.00 2.57
1841 2142 7.241663 TCGGCATGTACAAATGAAAGTATAC 57.758 36.000 0.00 0.00 0.00 1.47
1900 2201 4.873827 AGTTGCTTAAATAAGAATCGCCGA 59.126 37.500 4.39 0.00 35.33 5.54
1922 2223 3.055602 ACTCCAGTTCCCGTTATGTTACC 60.056 47.826 0.00 0.00 0.00 2.85
2121 2428 1.180029 CCCATTTTGTCTGGGCTGAG 58.820 55.000 0.00 0.00 46.62 3.35
2311 2618 9.573133 GATGTTTTTCCTTTAGATATTGTGTGG 57.427 33.333 0.00 0.00 0.00 4.17
2330 2641 4.105057 TGTGGGTACTTTTTCTGGTATGGT 59.895 41.667 0.00 0.00 0.00 3.55
2335 2646 7.114095 GGGTACTTTTTCTGGTATGGTATCAA 58.886 38.462 0.00 0.00 0.00 2.57
2341 2652 9.667107 CTTTTTCTGGTATGGTATCAAGAAGTA 57.333 33.333 0.00 0.00 0.00 2.24
2381 2692 4.945246 TGCTTATATTCTTCACGACCTCC 58.055 43.478 0.00 0.00 0.00 4.30
2505 2829 6.418946 TGTTAACAATATGGCCTATGTCACA 58.581 36.000 5.64 7.75 0.00 3.58
2528 2852 1.510480 GCCCTGACACTGCTGACAAC 61.510 60.000 0.00 0.00 0.00 3.32
2529 2853 1.224069 CCCTGACACTGCTGACAACG 61.224 60.000 0.00 0.00 0.00 4.10
2545 2869 7.710852 CTGACAACGATGTAAGCTAAATTTG 57.289 36.000 0.00 0.00 40.74 2.32
2546 2870 7.428282 TGACAACGATGTAAGCTAAATTTGA 57.572 32.000 0.00 0.00 40.74 2.69
2547 2871 7.866729 TGACAACGATGTAAGCTAAATTTGAA 58.133 30.769 0.00 0.00 40.74 2.69
2548 2872 7.801315 TGACAACGATGTAAGCTAAATTTGAAC 59.199 33.333 0.00 0.00 40.74 3.18
2549 2873 7.871853 ACAACGATGTAAGCTAAATTTGAACT 58.128 30.769 0.00 0.00 38.24 3.01
2550 2874 8.995220 ACAACGATGTAAGCTAAATTTGAACTA 58.005 29.630 0.00 0.00 38.24 2.24
2551 2875 9.988350 CAACGATGTAAGCTAAATTTGAACTAT 57.012 29.630 0.00 0.00 0.00 2.12
2553 2877 9.378551 ACGATGTAAGCTAAATTTGAACTATCA 57.621 29.630 0.00 0.13 0.00 2.15
2558 2882 9.556030 GTAAGCTAAATTTGAACTATCAACACC 57.444 33.333 0.00 0.00 45.01 4.16
2559 2883 7.158099 AGCTAAATTTGAACTATCAACACCC 57.842 36.000 0.00 0.00 45.01 4.61
2560 2884 6.027749 GCTAAATTTGAACTATCAACACCCG 58.972 40.000 0.00 0.00 45.01 5.28
2561 2885 4.434713 AATTTGAACTATCAACACCCGC 57.565 40.909 0.00 0.00 45.01 6.13
2562 2886 2.552599 TTGAACTATCAACACCCGCA 57.447 45.000 0.00 0.00 40.59 5.69
2563 2887 2.552599 TGAACTATCAACACCCGCAA 57.447 45.000 0.00 0.00 30.99 4.85
2564 2888 2.852449 TGAACTATCAACACCCGCAAA 58.148 42.857 0.00 0.00 30.99 3.68
2565 2889 3.215151 TGAACTATCAACACCCGCAAAA 58.785 40.909 0.00 0.00 30.99 2.44
2566 2890 3.823873 TGAACTATCAACACCCGCAAAAT 59.176 39.130 0.00 0.00 30.99 1.82
2567 2891 5.004448 TGAACTATCAACACCCGCAAAATA 58.996 37.500 0.00 0.00 30.99 1.40
2568 2892 5.473846 TGAACTATCAACACCCGCAAAATAA 59.526 36.000 0.00 0.00 30.99 1.40
2569 2893 5.968528 ACTATCAACACCCGCAAAATAAA 57.031 34.783 0.00 0.00 0.00 1.40
2570 2894 6.334102 ACTATCAACACCCGCAAAATAAAA 57.666 33.333 0.00 0.00 0.00 1.52
2571 2895 6.750148 ACTATCAACACCCGCAAAATAAAAA 58.250 32.000 0.00 0.00 0.00 1.94
2572 2896 7.382898 ACTATCAACACCCGCAAAATAAAAAT 58.617 30.769 0.00 0.00 0.00 1.82
2573 2897 8.524487 ACTATCAACACCCGCAAAATAAAAATA 58.476 29.630 0.00 0.00 0.00 1.40
2574 2898 9.360093 CTATCAACACCCGCAAAATAAAAATAA 57.640 29.630 0.00 0.00 0.00 1.40
2577 2901 8.889717 TCAACACCCGCAAAATAAAAATAAAAA 58.110 25.926 0.00 0.00 0.00 1.94
2626 2992 2.149578 GTTCAAGCTCACAGTCATGCT 58.850 47.619 0.00 0.00 37.37 3.79
2630 2996 3.069289 CAAGCTCACAGTCATGCTAACA 58.931 45.455 0.00 0.00 35.09 2.41
2631 2997 3.623906 AGCTCACAGTCATGCTAACAT 57.376 42.857 0.00 0.00 36.79 2.71
2632 2998 3.947868 AGCTCACAGTCATGCTAACATT 58.052 40.909 0.00 0.00 32.87 2.71
2633 2999 4.330250 AGCTCACAGTCATGCTAACATTT 58.670 39.130 0.00 0.00 32.87 2.32
2634 3000 4.763793 AGCTCACAGTCATGCTAACATTTT 59.236 37.500 0.00 0.00 32.87 1.82
2635 3001 5.242393 AGCTCACAGTCATGCTAACATTTTT 59.758 36.000 0.00 0.00 32.87 1.94
2636 3002 5.570589 GCTCACAGTCATGCTAACATTTTTC 59.429 40.000 0.00 0.00 32.87 2.29
2637 3003 6.631971 TCACAGTCATGCTAACATTTTTCA 57.368 33.333 0.00 0.00 32.87 2.69
2639 3005 7.660112 TCACAGTCATGCTAACATTTTTCATT 58.340 30.769 0.00 0.00 32.87 2.57
2681 3172 8.885494 TTGTAAGCTTGCTAACATTTTTCATT 57.115 26.923 15.83 0.00 0.00 2.57
2682 3173 8.885494 TGTAAGCTTGCTAACATTTTTCATTT 57.115 26.923 15.83 0.00 0.00 2.32
2683 3174 9.323985 TGTAAGCTTGCTAACATTTTTCATTTT 57.676 25.926 15.83 0.00 0.00 1.82
2791 3288 3.077359 GTTGTTTCCATCCACTCTCCTG 58.923 50.000 0.00 0.00 0.00 3.86
2893 3390 7.303182 TCACATACCCTGAGTATATTTCCTG 57.697 40.000 0.00 0.00 39.79 3.86
2894 3391 7.073208 TCACATACCCTGAGTATATTTCCTGA 58.927 38.462 0.00 0.00 39.79 3.86
2902 3399 6.018589 TGAGTATATTTCCTGAGCTCATCG 57.981 41.667 18.63 10.73 0.00 3.84
2904 3401 3.758755 ATATTTCCTGAGCTCATCGCA 57.241 42.857 18.63 2.40 42.61 5.10
3208 3707 2.497273 GTTCCAGCAAGGCCATGTTTAT 59.503 45.455 10.15 0.00 37.29 1.40
3218 3717 5.405935 AGGCCATGTTTATTTTGTTCTCC 57.594 39.130 5.01 0.00 0.00 3.71
3256 3755 5.771666 TCAATTTCTTCTCCAAAGCATGACT 59.228 36.000 0.00 0.00 0.00 3.41
3264 3763 6.983906 TCTCCAAAGCATGACTATCTGATA 57.016 37.500 0.00 0.00 0.00 2.15
3394 3893 6.127980 TGCTCGAGTAAGCAGGTATATGATAC 60.128 42.308 15.13 0.00 47.00 2.24
3397 3896 8.041829 TCGAGTAAGCAGGTATATGATACTTC 57.958 38.462 0.00 0.00 29.69 3.01
3669 4169 9.736023 AGAACTTTGCAACTTGAGTATAAAAAG 57.264 29.630 0.00 0.00 0.00 2.27
3804 4308 4.202245 TCGCTTGTTGTTTAGCTAGGAT 57.798 40.909 0.00 0.00 35.25 3.24
3812 4316 6.173339 TGTTGTTTAGCTAGGATTTGGAGAG 58.827 40.000 0.00 0.00 0.00 3.20
3926 4435 8.230486 ACTGTTAAATCGATGTTGTCATTTCTC 58.770 33.333 0.00 0.00 34.06 2.87
3934 4443 6.934645 TCGATGTTGTCATTTCTCTACCTTTT 59.065 34.615 0.00 0.00 34.06 2.27
3965 4475 8.292448 CGTAACTTCTTGTACCAGTAAGAGTAA 58.708 37.037 10.84 0.00 34.68 2.24
3981 4491 9.930158 AGTAAGAGTAATATTTCCTCTGTCTCT 57.070 33.333 14.61 9.69 35.79 3.10
4037 4547 4.396166 CAGGCTAAAAGAATGGATGTCGTT 59.604 41.667 0.00 0.00 0.00 3.85
4204 4722 5.197682 ACTAATTAGTGGTCGGTAGATGC 57.802 43.478 17.35 0.00 34.72 3.91
4256 4774 8.175716 GGTTCTTGATACTTTAGTTACATGTGC 58.824 37.037 9.11 1.02 0.00 4.57
4329 4847 8.626526 GCTAGTAGGCCATTATATTCTCTCTAC 58.373 40.741 5.01 0.00 0.00 2.59
4336 4854 6.326375 CCATTATATTCTCTCTACGTCTGCC 58.674 44.000 0.00 0.00 0.00 4.85
4355 4875 2.956385 GCCCCATTGGATCATCTTGGTT 60.956 50.000 3.62 0.00 35.39 3.67
4408 4928 1.795286 GGAGTGTTGCTTCTTCAGACG 59.205 52.381 0.00 0.00 0.00 4.18
4411 4931 0.106708 TGTTGCTTCTTCAGACGGCT 59.893 50.000 0.00 0.00 0.00 5.52
4447 4967 2.877168 CTCTGAATGGCAGGCAAGTATC 59.123 50.000 0.00 0.00 44.98 2.24
4448 4968 2.239402 TCTGAATGGCAGGCAAGTATCA 59.761 45.455 0.00 3.04 44.98 2.15
4449 4969 3.018856 CTGAATGGCAGGCAAGTATCAA 58.981 45.455 0.00 0.00 41.07 2.57
4450 4970 2.754552 TGAATGGCAGGCAAGTATCAAC 59.245 45.455 0.00 0.00 0.00 3.18
4451 4971 2.814805 ATGGCAGGCAAGTATCAACT 57.185 45.000 0.00 0.00 37.65 3.16
4452 4972 3.931907 ATGGCAGGCAAGTATCAACTA 57.068 42.857 0.00 0.00 33.75 2.24
4453 4973 3.931907 TGGCAGGCAAGTATCAACTAT 57.068 42.857 0.00 0.00 33.75 2.12
4454 4974 3.808728 TGGCAGGCAAGTATCAACTATC 58.191 45.455 0.00 0.00 33.75 2.08
4463 4983 8.486210 AGGCAAGTATCAACTATCAAGTCAATA 58.514 33.333 0.00 0.00 33.75 1.90
4477 4997 7.905604 TCAAGTCAATAGTATTCACAGTTGG 57.094 36.000 0.00 0.00 0.00 3.77
4481 5001 8.723942 AGTCAATAGTATTCACAGTTGGAATC 57.276 34.615 0.00 0.00 36.45 2.52
4483 5003 7.770897 GTCAATAGTATTCACAGTTGGAATCCT 59.229 37.037 0.00 0.00 36.45 3.24
4484 5004 8.328758 TCAATAGTATTCACAGTTGGAATCCTT 58.671 33.333 0.00 0.00 36.45 3.36
4485 5005 8.960591 CAATAGTATTCACAGTTGGAATCCTTT 58.039 33.333 0.00 0.00 36.45 3.11
4486 5006 9.533831 AATAGTATTCACAGTTGGAATCCTTTT 57.466 29.630 0.00 0.00 36.45 2.27
4497 5023 6.211384 AGTTGGAATCCTTTTAGTTTCCATGG 59.789 38.462 4.97 4.97 45.14 3.66
4520 5046 5.012768 GGGGATTAGGCTATGCACTAGTTAA 59.987 44.000 0.00 0.00 0.00 2.01
4524 5050 6.540438 TTAGGCTATGCACTAGTTAACTGT 57.460 37.500 18.56 11.03 0.00 3.55
4540 5066 7.375053 AGTTAACTGTCAAATGTGTTGTTGTT 58.625 30.769 7.48 0.00 0.00 2.83
4554 5080 6.040955 TGTGTTGTTGTTTGGCCTATTATTCA 59.959 34.615 3.32 0.00 0.00 2.57
4556 5082 5.323371 TGTTGTTTGGCCTATTATTCAGC 57.677 39.130 3.32 0.00 0.00 4.26
4660 5195 1.066752 CGTCAACACGGTGGAGACA 59.933 57.895 24.72 1.17 42.73 3.41
4702 5237 4.717877 TCAAAGCAAAGATGAAGAGGACA 58.282 39.130 0.00 0.00 0.00 4.02
4707 5242 3.415212 CAAAGATGAAGAGGACAAGGCA 58.585 45.455 0.00 0.00 0.00 4.75
4772 5310 2.566833 TTGACAATCCAGTCTGGTGG 57.433 50.000 18.65 11.38 39.03 4.61
4800 5338 1.749635 CCATGCCTGGAATGGAGACAG 60.750 57.143 27.37 0.00 46.44 3.51
4884 5426 3.057174 TGTGTGCTCGTGGTTTTTCTTTT 60.057 39.130 0.00 0.00 0.00 2.27
4937 5479 4.380867 GCAATTTGGTCCCATACTCTGTTG 60.381 45.833 0.00 0.00 0.00 3.33
5066 5614 3.609853 TGCTTGAACAAAGTGTCTCAGT 58.390 40.909 0.00 0.00 38.25 3.41
5113 5697 8.705594 CCCTTCAATTATTCAGTACTCTCCTAA 58.294 37.037 0.00 0.00 0.00 2.69
5114 5698 9.535878 CCTTCAATTATTCAGTACTCTCCTAAC 57.464 37.037 0.00 0.00 0.00 2.34
5115 5699 9.535878 CTTCAATTATTCAGTACTCTCCTAACC 57.464 37.037 0.00 0.00 0.00 2.85
5116 5700 8.019656 TCAATTATTCAGTACTCTCCTAACCC 57.980 38.462 0.00 0.00 0.00 4.11
5117 5701 7.622081 TCAATTATTCAGTACTCTCCTAACCCA 59.378 37.037 0.00 0.00 0.00 4.51
5118 5702 7.604657 ATTATTCAGTACTCTCCTAACCCAG 57.395 40.000 0.00 0.00 0.00 4.45
5120 5704 2.024273 TCAGTACTCTCCTAACCCAGGG 60.024 54.545 2.85 2.85 45.58 4.45
5121 5705 1.121378 GTACTCTCCTAACCCAGGGC 58.879 60.000 4.91 0.00 45.58 5.19
5122 5706 0.031414 TACTCTCCTAACCCAGGGCC 60.031 60.000 4.91 0.00 45.58 5.80
5123 5707 1.003573 CTCTCCTAACCCAGGGCCT 59.996 63.158 4.91 0.00 45.58 5.19
5124 5708 1.306997 TCTCCTAACCCAGGGCCTG 60.307 63.158 27.04 27.04 45.58 4.85
5125 5709 1.306997 CTCCTAACCCAGGGCCTGA 60.307 63.158 34.84 13.92 45.58 3.86
5126 5710 1.306997 TCCTAACCCAGGGCCTGAG 60.307 63.158 34.84 25.10 45.58 3.35
5127 5711 1.616628 CCTAACCCAGGGCCTGAGT 60.617 63.158 34.84 25.89 41.26 3.41
5128 5712 1.604378 CTAACCCAGGGCCTGAGTG 59.396 63.158 34.84 22.93 32.44 3.51
5129 5713 1.151899 TAACCCAGGGCCTGAGTGT 60.152 57.895 34.84 23.58 32.44 3.55
5130 5714 1.198759 TAACCCAGGGCCTGAGTGTC 61.199 60.000 34.84 0.00 32.44 3.67
5131 5715 2.930019 CCCAGGGCCTGAGTGTCA 60.930 66.667 34.84 0.00 32.44 3.58
5132 5716 2.528818 CCCAGGGCCTGAGTGTCAA 61.529 63.158 34.84 0.00 32.44 3.18
5133 5717 1.455849 CCAGGGCCTGAGTGTCAAA 59.544 57.895 34.84 0.00 32.44 2.69
5134 5718 0.890996 CCAGGGCCTGAGTGTCAAAC 60.891 60.000 34.84 0.00 32.44 2.93
5135 5719 0.890996 CAGGGCCTGAGTGTCAAACC 60.891 60.000 29.96 0.00 32.44 3.27
5136 5720 1.603739 GGGCCTGAGTGTCAAACCC 60.604 63.158 0.84 0.00 35.30 4.11
5137 5721 1.603739 GGCCTGAGTGTCAAACCCC 60.604 63.158 0.00 0.00 0.00 4.95
5138 5722 1.456287 GCCTGAGTGTCAAACCCCT 59.544 57.895 0.00 0.00 0.00 4.79
5139 5723 0.178990 GCCTGAGTGTCAAACCCCTT 60.179 55.000 0.00 0.00 0.00 3.95
5140 5724 1.754201 GCCTGAGTGTCAAACCCCTTT 60.754 52.381 0.00 0.00 0.00 3.11
5141 5725 2.230660 CCTGAGTGTCAAACCCCTTTC 58.769 52.381 0.00 0.00 0.00 2.62
5142 5726 2.158608 CCTGAGTGTCAAACCCCTTTCT 60.159 50.000 0.00 0.00 0.00 2.52
5143 5727 3.555966 CTGAGTGTCAAACCCCTTTCTT 58.444 45.455 0.00 0.00 0.00 2.52
5144 5728 3.954258 CTGAGTGTCAAACCCCTTTCTTT 59.046 43.478 0.00 0.00 0.00 2.52
5145 5729 3.699038 TGAGTGTCAAACCCCTTTCTTTG 59.301 43.478 0.00 0.00 0.00 2.77
5146 5730 3.699538 GAGTGTCAAACCCCTTTCTTTGT 59.300 43.478 0.00 0.00 0.00 2.83
5147 5731 3.699538 AGTGTCAAACCCCTTTCTTTGTC 59.300 43.478 0.00 0.00 0.00 3.18
5148 5732 3.028130 TGTCAAACCCCTTTCTTTGTCC 58.972 45.455 0.00 0.00 0.00 4.02
5149 5733 3.296854 GTCAAACCCCTTTCTTTGTCCT 58.703 45.455 0.00 0.00 0.00 3.85
5150 5734 4.079672 TGTCAAACCCCTTTCTTTGTCCTA 60.080 41.667 0.00 0.00 0.00 2.94
5151 5735 4.891168 GTCAAACCCCTTTCTTTGTCCTAA 59.109 41.667 0.00 0.00 0.00 2.69
5152 5736 4.891168 TCAAACCCCTTTCTTTGTCCTAAC 59.109 41.667 0.00 0.00 0.00 2.34
5153 5737 3.520691 ACCCCTTTCTTTGTCCTAACC 57.479 47.619 0.00 0.00 0.00 2.85
5154 5738 3.061369 ACCCCTTTCTTTGTCCTAACCT 58.939 45.455 0.00 0.00 0.00 3.50
5174 5758 5.148651 CCTACCCAGGGACTAATTATTCG 57.851 47.826 14.54 0.00 38.41 3.34
5195 5790 2.223572 GGTACATGTGCTGCTATTTGCC 60.224 50.000 13.86 0.00 42.00 4.52
5203 5798 1.133790 GCTGCTATTTGCCCTCTTGTG 59.866 52.381 0.00 0.00 42.00 3.33
5216 5811 2.738846 CCTCTTGTGAACATCTTGACCG 59.261 50.000 0.00 0.00 0.00 4.79
5223 5818 3.502211 GTGAACATCTTGACCGTCCATTT 59.498 43.478 0.00 0.00 0.00 2.32
5281 5894 2.026915 TGTTGCTAGTGGACATCTGCAT 60.027 45.455 0.00 0.00 0.00 3.96
5286 5899 0.545171 AGTGGACATCTGCATCCTGG 59.455 55.000 5.69 0.00 35.86 4.45
5297 5910 1.213430 TGCATCCTGGCAATCATGAGA 59.787 47.619 0.09 0.00 41.65 3.27
5335 5949 3.020984 GGCGAAAACCATAGAAATCCCA 58.979 45.455 0.00 0.00 0.00 4.37
5337 5951 4.499696 GGCGAAAACCATAGAAATCCCATG 60.500 45.833 0.00 0.00 0.00 3.66
5389 6003 2.423517 GGGATCTTGGTCCATTCCTTCC 60.424 54.545 13.11 6.99 40.17 3.46
5399 6013 3.070878 GTCCATTCCTTCCTCAGATCCTC 59.929 52.174 0.00 0.00 0.00 3.71
5404 6018 1.137872 CCTTCCTCAGATCCTCCAACG 59.862 57.143 0.00 0.00 0.00 4.10
5413 6027 8.061920 TCCTCAGATCCTCCAACGATTATATAT 58.938 37.037 0.00 0.00 0.00 0.86
5414 6028 9.355916 CCTCAGATCCTCCAACGATTATATATA 57.644 37.037 0.00 0.00 0.00 0.86
5444 6058 8.575736 TCCAACTCCTTTTATAGAATCCCATA 57.424 34.615 0.00 0.00 0.00 2.74
5462 6076 7.506328 TCCCATAATATATCTATGTCGTCCG 57.494 40.000 11.01 0.00 0.00 4.79
5471 6085 0.956633 TATGTCGTCCGATACCTGCC 59.043 55.000 0.00 0.00 0.00 4.85
5488 6102 1.076559 CCCCTGCAGCCATGATTGA 60.077 57.895 8.66 0.00 0.00 2.57
5499 6113 5.230182 CAGCCATGATTGAATGATCATTGG 58.770 41.667 25.37 18.78 42.57 3.16
5503 6117 4.929819 TGATTGAATGATCATTGGGCAG 57.070 40.909 25.37 0.00 34.96 4.85
5506 6120 3.369242 TGAATGATCATTGGGCAGTGA 57.631 42.857 25.37 0.00 0.00 3.41
5507 6121 3.284617 TGAATGATCATTGGGCAGTGAG 58.715 45.455 25.37 0.00 30.53 3.51
5509 6123 1.064240 ATGATCATTGGGCAGTGAGCA 60.064 47.619 1.18 0.00 45.07 4.26
5523 6137 4.053295 CAGTGAGCATTTTTGGAACCAAG 58.947 43.478 6.39 0.00 37.24 3.61
5536 6150 6.515272 TTGGAACCAAGATTTCTCATTAGC 57.485 37.500 1.83 0.00 0.00 3.09
5558 6793 6.682746 AGCCGACATCTTGATAATAGTAGTG 58.317 40.000 0.00 0.00 0.00 2.74
5642 6877 5.061808 CGTTTATGGAAGTAAGTGAAGTCGG 59.938 44.000 0.00 0.00 0.00 4.79
5694 6929 5.648092 GCACTAGACACTAAACCAATCCATT 59.352 40.000 0.00 0.00 0.00 3.16
5702 6937 6.150474 ACACTAAACCAATCCATTTTCTACCG 59.850 38.462 0.00 0.00 0.00 4.02
5715 6950 7.825270 TCCATTTTCTACCGCTAAATGTCTAAA 59.175 33.333 0.00 0.00 37.49 1.85
5729 6964 4.671880 TGTCTAAAACACACACACACAC 57.328 40.909 0.00 0.00 31.20 3.82
5742 6978 0.962489 CACACACGAGGAGAAGGAGT 59.038 55.000 0.00 0.00 0.00 3.85
5755 6991 6.129179 AGGAGAAGGAGTAGAAGAAGATGAG 58.871 44.000 0.00 0.00 0.00 2.90
5756 6992 5.301805 GGAGAAGGAGTAGAAGAAGATGAGG 59.698 48.000 0.00 0.00 0.00 3.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.778299 TCTCACCTGCCATGTGTTTAC 58.222 47.619 0.00 0.00 35.25 2.01
30 31 3.082548 CCGTCGGATATACATCTCACCT 58.917 50.000 4.91 0.00 0.00 4.00
85 86 1.391485 CTTCATTGCTTCTCGGACACG 59.609 52.381 0.00 0.00 42.74 4.49
173 174 0.390860 CATTGCCTAGCTCTACCGCT 59.609 55.000 0.00 0.00 43.83 5.52
178 179 1.762957 GACCACCATTGCCTAGCTCTA 59.237 52.381 0.00 0.00 0.00 2.43
180 181 0.253044 TGACCACCATTGCCTAGCTC 59.747 55.000 0.00 0.00 0.00 4.09
191 192 3.500448 TCTATGCTTGTTTGACCACCA 57.500 42.857 0.00 0.00 0.00 4.17
198 200 5.240891 TCCTCTCACTTCTATGCTTGTTTG 58.759 41.667 0.00 0.00 0.00 2.93
206 208 3.069443 GCCCTCTTCCTCTCACTTCTATG 59.931 52.174 0.00 0.00 0.00 2.23
233 235 2.983592 GTGACCAACCCTTGCCCG 60.984 66.667 0.00 0.00 0.00 6.13
235 237 1.047801 AAATGTGACCAACCCTTGCC 58.952 50.000 0.00 0.00 0.00 4.52
238 240 2.965147 CCTTCAAATGTGACCAACCCTT 59.035 45.455 0.00 0.00 31.90 3.95
269 271 1.605058 AATCCGACAGGTCAGACCCG 61.605 60.000 16.72 12.46 39.75 5.28
275 277 0.677288 ACGTCAAATCCGACAGGTCA 59.323 50.000 0.00 0.00 39.05 4.02
282 284 2.052891 CGTACAACACGTCAAATCCGA 58.947 47.619 0.00 0.00 45.82 4.55
313 315 0.842905 TACTTGGGGTAGCTTGGGCA 60.843 55.000 0.00 0.00 41.70 5.36
352 358 2.437716 GGAGCGAATTTGGGGCGA 60.438 61.111 0.00 0.00 0.00 5.54
353 359 2.749839 TGGAGCGAATTTGGGGCG 60.750 61.111 0.00 0.00 0.00 6.13
354 360 1.322538 ATGTGGAGCGAATTTGGGGC 61.323 55.000 0.00 0.00 0.00 5.80
355 361 2.051334 TATGTGGAGCGAATTTGGGG 57.949 50.000 0.00 0.00 0.00 4.96
356 362 3.631145 CATATGTGGAGCGAATTTGGG 57.369 47.619 0.00 0.00 0.00 4.12
368 374 0.532862 GGCGACTGACCCATATGTGG 60.533 60.000 0.51 0.51 45.61 4.17
369 375 2.992089 GGCGACTGACCCATATGTG 58.008 57.895 1.24 0.00 0.00 3.21
377 383 1.644786 CGAATTTGGGGCGACTGACC 61.645 60.000 0.00 0.00 45.75 4.02
378 384 1.794222 CGAATTTGGGGCGACTGAC 59.206 57.895 0.00 0.00 0.00 3.51
379 385 2.038269 GCGAATTTGGGGCGACTGA 61.038 57.895 0.00 0.00 0.00 3.41
380 386 1.982073 GAGCGAATTTGGGGCGACTG 61.982 60.000 0.00 0.00 0.00 3.51
381 387 1.745489 GAGCGAATTTGGGGCGACT 60.745 57.895 0.00 0.00 0.00 4.18
382 388 2.761195 GGAGCGAATTTGGGGCGAC 61.761 63.158 0.00 0.00 0.00 5.19
383 389 2.437716 GGAGCGAATTTGGGGCGA 60.438 61.111 0.00 0.00 0.00 5.54
409 415 0.399075 ACCGAACCTTCAAACCCGAT 59.601 50.000 0.00 0.00 0.00 4.18
416 422 1.904287 CCATCCAACCGAACCTTCAA 58.096 50.000 0.00 0.00 0.00 2.69
427 433 3.006940 TGACAAAGTATCGCCATCCAAC 58.993 45.455 0.00 0.00 0.00 3.77
490 498 5.332732 CGAAAAGTATTGCGCATTATACCGA 60.333 40.000 22.54 2.78 0.00 4.69
499 507 1.728068 TAGCCGAAAAGTATTGCGCA 58.272 45.000 5.66 5.66 0.00 6.09
546 555 5.709966 ACTATTTTCCGTCATTTTTGGCTC 58.290 37.500 0.00 0.00 0.00 4.70
572 581 0.171903 GCTAGGCGAACGTTCACCTA 59.828 55.000 32.48 32.48 40.13 3.08
573 582 1.080025 GCTAGGCGAACGTTCACCT 60.080 57.895 33.56 33.56 42.15 4.00
576 585 0.315886 TTCTGCTAGGCGAACGTTCA 59.684 50.000 26.71 7.45 0.00 3.18
589 598 2.737252 GCGTTTGCTAGTAGTTTCTGCT 59.263 45.455 0.00 0.00 38.39 4.24
660 669 6.096141 TGGCATTTCTTTAGTTTTGAGTGTGA 59.904 34.615 0.00 0.00 0.00 3.58
741 756 1.269448 AGATGCCATTTGCGAACGTTT 59.731 42.857 0.46 0.00 45.60 3.60
756 771 1.349627 CGTTCGCCACATGAGATGC 59.650 57.895 0.00 0.00 0.00 3.91
821 841 4.446413 CTGTCGGGGCCGGTGTAC 62.446 72.222 11.18 2.83 40.25 2.90
963 1022 4.899239 GAGAGATGGGCGGTGCGG 62.899 72.222 0.00 0.00 0.00 5.69
964 1023 4.899239 GGAGAGATGGGCGGTGCG 62.899 72.222 0.00 0.00 0.00 5.34
965 1024 3.474570 AGGAGAGATGGGCGGTGC 61.475 66.667 0.00 0.00 0.00 5.01
1236 1296 1.760480 GAGAGACAGAGGAGGGGGC 60.760 68.421 0.00 0.00 0.00 5.80
1417 1656 1.815421 AGATTCCGATGCCGCACAC 60.815 57.895 0.00 0.00 0.00 3.82
1418 1657 1.815003 CAGATTCCGATGCCGCACA 60.815 57.895 0.00 0.00 0.00 4.57
1441 1680 1.328680 CAGCGAATTCAACCGGATCAG 59.671 52.381 9.46 0.00 0.00 2.90
1450 1690 2.073117 TCGTACAGCAGCGAATTCAA 57.927 45.000 6.22 0.00 33.96 2.69
1472 1712 0.740737 GCCAATAAGAAGCGCCACAT 59.259 50.000 2.29 0.00 0.00 3.21
1548 1835 2.520904 GGCGAGATGAAGCAGCGAC 61.521 63.158 0.00 0.00 34.54 5.19
1641 1933 5.535030 TGGAGTAATAATCTCTAGCTTCGCA 59.465 40.000 0.00 0.00 33.06 5.10
1680 1972 9.703892 GCTTAATAATCTCTAGCTTCAGATGAA 57.296 33.333 7.65 0.00 29.40 2.57
1692 1984 9.561069 GAACAATTCTGGGCTTAATAATCTCTA 57.439 33.333 0.00 0.00 0.00 2.43
1694 1986 8.225603 TGAACAATTCTGGGCTTAATAATCTC 57.774 34.615 0.00 0.00 0.00 2.75
1695 1987 8.773033 ATGAACAATTCTGGGCTTAATAATCT 57.227 30.769 0.00 0.00 0.00 2.40
1700 1992 6.189859 TCAGATGAACAATTCTGGGCTTAAT 58.810 36.000 5.85 0.00 39.84 1.40
1730 2024 5.296283 GGCTAGCATATGGAGCAATAATCTG 59.704 44.000 18.24 0.00 37.98 2.90
1739 2038 1.517242 GTGTGGCTAGCATATGGAGC 58.483 55.000 18.24 0.00 35.39 4.70
1766 2066 0.675633 AACACATGGGAGCACTTTGC 59.324 50.000 0.00 0.00 45.46 3.68
1796 2096 6.106673 CCGAAACAATACATGGAAGTACTCT 58.893 40.000 0.00 0.00 0.00 3.24
1852 2153 9.318041 CTGAAACAATACAAACGAGAACATAAG 57.682 33.333 0.00 0.00 0.00 1.73
1860 2161 5.510671 AGCAACTGAAACAATACAAACGAG 58.489 37.500 0.00 0.00 0.00 4.18
1900 2201 3.055602 GGTAACATAACGGGAACTGGAGT 60.056 47.826 0.00 0.00 40.47 3.85
2121 2428 9.233232 CACAACTCATAAAGAAACAACTAAACC 57.767 33.333 0.00 0.00 0.00 3.27
2311 2618 8.044908 TCTTGATACCATACCAGAAAAAGTACC 58.955 37.037 0.00 0.00 0.00 3.34
2381 2692 9.608617 GTTCAGAATGCATTAATCATCATACTG 57.391 33.333 12.97 11.01 34.76 2.74
2414 2725 7.692908 AGTTTATGTTTCACCACAAAAATCG 57.307 32.000 0.00 0.00 0.00 3.34
2486 2797 4.778213 ACTGTGACATAGGCCATATTGT 57.222 40.909 5.01 2.04 0.00 2.71
2487 2798 4.261322 GCAACTGTGACATAGGCCATATTG 60.261 45.833 5.01 0.00 0.00 1.90
2488 2799 3.885297 GCAACTGTGACATAGGCCATATT 59.115 43.478 5.01 0.00 0.00 1.28
2505 2829 1.228063 CAGCAGTGTCAGGGCAACT 60.228 57.895 0.00 0.00 0.00 3.16
2540 2864 3.823873 TGCGGGTGTTGATAGTTCAAATT 59.176 39.130 0.00 0.00 43.29 1.82
2541 2865 3.417101 TGCGGGTGTTGATAGTTCAAAT 58.583 40.909 0.00 0.00 43.29 2.32
2542 2866 2.852449 TGCGGGTGTTGATAGTTCAAA 58.148 42.857 0.00 0.00 43.29 2.69
2543 2867 2.552599 TGCGGGTGTTGATAGTTCAA 57.447 45.000 0.00 0.00 39.54 2.69
2544 2868 2.552599 TTGCGGGTGTTGATAGTTCA 57.447 45.000 0.00 0.00 0.00 3.18
2545 2869 3.907894 TTTTGCGGGTGTTGATAGTTC 57.092 42.857 0.00 0.00 0.00 3.01
2546 2870 5.968528 TTATTTTGCGGGTGTTGATAGTT 57.031 34.783 0.00 0.00 0.00 2.24
2547 2871 5.968528 TTTATTTTGCGGGTGTTGATAGT 57.031 34.783 0.00 0.00 0.00 2.12
2548 2872 7.826260 ATTTTTATTTTGCGGGTGTTGATAG 57.174 32.000 0.00 0.00 0.00 2.08
2549 2873 9.706691 TTTATTTTTATTTTGCGGGTGTTGATA 57.293 25.926 0.00 0.00 0.00 2.15
2550 2874 8.608844 TTTATTTTTATTTTGCGGGTGTTGAT 57.391 26.923 0.00 0.00 0.00 2.57
2551 2875 8.433421 TTTTATTTTTATTTTGCGGGTGTTGA 57.567 26.923 0.00 0.00 0.00 3.18
2552 2876 9.670719 ATTTTTATTTTTATTTTGCGGGTGTTG 57.329 25.926 0.00 0.00 0.00 3.33
2554 2878 9.670719 CAATTTTTATTTTTATTTTGCGGGTGT 57.329 25.926 0.00 0.00 0.00 4.16
2555 2879 9.884465 TCAATTTTTATTTTTATTTTGCGGGTG 57.116 25.926 0.00 0.00 0.00 4.61
2681 3172 8.624367 TGGTGTAGAAATTCGGAAGATAAAAA 57.376 30.769 0.00 0.00 41.60 1.94
2682 3173 8.673711 CATGGTGTAGAAATTCGGAAGATAAAA 58.326 33.333 0.00 0.00 41.60 1.52
2683 3174 7.201696 GCATGGTGTAGAAATTCGGAAGATAAA 60.202 37.037 0.00 0.00 41.60 1.40
2684 3175 6.260050 GCATGGTGTAGAAATTCGGAAGATAA 59.740 38.462 0.00 0.00 41.60 1.75
2685 3176 5.758296 GCATGGTGTAGAAATTCGGAAGATA 59.242 40.000 0.00 0.00 41.60 1.98
2693 3185 3.063997 CGTCAGGCATGGTGTAGAAATTC 59.936 47.826 0.00 0.00 0.00 2.17
2699 3191 1.410517 AGATCGTCAGGCATGGTGTAG 59.589 52.381 0.00 0.00 0.00 2.74
2702 3194 1.683385 TCTAGATCGTCAGGCATGGTG 59.317 52.381 0.00 0.00 0.00 4.17
2791 3288 2.615493 CCACACCCACCATCTCAGTAAC 60.615 54.545 0.00 0.00 0.00 2.50
2902 3399 3.374988 TCAATTCTGTCGGACAATGATGC 59.625 43.478 12.54 0.00 0.00 3.91
2904 3401 5.430886 TGATCAATTCTGTCGGACAATGAT 58.569 37.500 19.53 19.53 0.00 2.45
3156 3655 3.376234 CAGATGTGTCGATGCCAGATTTT 59.624 43.478 0.00 0.00 0.00 1.82
3218 3717 9.807386 GAGAAGAAATTGATTTTGCAAGATTTG 57.193 29.630 3.69 0.00 0.00 2.32
3270 3769 7.358066 CACCTGAAAATATAGCAGCACTTATG 58.642 38.462 0.00 0.00 0.00 1.90
3271 3770 6.488006 CCACCTGAAAATATAGCAGCACTTAT 59.512 38.462 0.00 0.00 0.00 1.73
3272 3771 5.822519 CCACCTGAAAATATAGCAGCACTTA 59.177 40.000 0.00 0.00 0.00 2.24
3273 3772 4.641989 CCACCTGAAAATATAGCAGCACTT 59.358 41.667 0.00 0.00 0.00 3.16
3274 3773 4.080356 TCCACCTGAAAATATAGCAGCACT 60.080 41.667 0.00 0.00 0.00 4.40
3397 3896 6.017109 ACAAAGCAACATACCAACTTCTACAG 60.017 38.462 0.00 0.00 0.00 2.74
3804 4308 1.134128 TGTGCAAGTGCTCTCTCCAAA 60.134 47.619 4.69 0.00 42.66 3.28
3812 4316 6.956299 ATTCATTTATTTGTGCAAGTGCTC 57.044 33.333 4.69 1.43 42.66 4.26
3890 4399 7.327975 ACATCGATTTAACAGTCCATCAAGTA 58.672 34.615 0.00 0.00 0.00 2.24
3926 4435 4.891260 AGAAGTTACGGTGGAAAAGGTAG 58.109 43.478 0.00 0.00 0.00 3.18
3934 4443 2.964464 TGGTACAAGAAGTTACGGTGGA 59.036 45.455 0.00 0.00 31.92 4.02
3974 4484 8.616076 ACAACAGAGTAAATCAAAAAGAGACAG 58.384 33.333 0.00 0.00 0.00 3.51
3981 4491 9.515020 GTCAATGACAACAGAGTAAATCAAAAA 57.485 29.630 8.74 0.00 32.09 1.94
4256 4774 5.130292 TCGACTGAACAGTAAGGTAAAGG 57.870 43.478 7.46 0.00 42.66 3.11
4324 4842 0.179073 CCAATGGGGCAGACGTAGAG 60.179 60.000 0.00 0.00 0.00 2.43
4329 4847 0.179009 ATGATCCAATGGGGCAGACG 60.179 55.000 0.00 0.00 36.21 4.18
4336 4854 4.796606 AGTAACCAAGATGATCCAATGGG 58.203 43.478 12.34 0.67 35.44 4.00
4355 4875 5.570205 TCAAACCCCTGTAAACATGAGTA 57.430 39.130 0.00 0.00 0.00 2.59
4411 4931 4.329545 GAGGTGAGCCCGTGCCAA 62.330 66.667 0.00 0.00 38.69 4.52
4451 4971 9.599866 CCAACTGTGAATACTATTGACTTGATA 57.400 33.333 0.86 0.00 0.00 2.15
4452 4972 8.321353 TCCAACTGTGAATACTATTGACTTGAT 58.679 33.333 0.86 0.00 0.00 2.57
4453 4973 7.676004 TCCAACTGTGAATACTATTGACTTGA 58.324 34.615 0.86 0.00 0.00 3.02
4454 4974 7.905604 TCCAACTGTGAATACTATTGACTTG 57.094 36.000 0.86 0.00 0.00 3.16
4463 4983 8.164070 ACTAAAAGGATTCCAACTGTGAATACT 58.836 33.333 5.29 0.91 43.66 2.12
4477 4997 5.269189 TCCCCATGGAAACTAAAAGGATTC 58.731 41.667 15.22 0.00 37.86 2.52
4481 5001 5.598417 CCTAATCCCCATGGAAACTAAAAGG 59.402 44.000 15.22 1.97 45.98 3.11
4483 5003 4.959839 GCCTAATCCCCATGGAAACTAAAA 59.040 41.667 15.22 0.00 45.98 1.52
4484 5004 4.231890 AGCCTAATCCCCATGGAAACTAAA 59.768 41.667 15.22 0.00 45.98 1.85
4485 5005 3.791545 AGCCTAATCCCCATGGAAACTAA 59.208 43.478 15.22 0.00 45.98 2.24
4486 5006 3.403322 AGCCTAATCCCCATGGAAACTA 58.597 45.455 15.22 0.00 45.98 2.24
4497 5023 4.625607 AACTAGTGCATAGCCTAATCCC 57.374 45.455 0.00 0.00 34.56 3.85
4520 5046 4.928615 CCAAACAACAACACATTTGACAGT 59.071 37.500 0.00 0.00 34.62 3.55
4524 5050 3.055530 AGGCCAAACAACAACACATTTGA 60.056 39.130 5.01 0.00 34.62 2.69
4603 5138 1.675310 CACCAGCAAGATCCCGCAA 60.675 57.895 6.72 0.00 0.00 4.85
4660 5195 1.062488 ACCTCAGTTTCAGGGCCAGT 61.062 55.000 6.18 0.00 35.01 4.00
4800 5338 3.316308 AGAGATGGTTTTGTCAGTGTTGC 59.684 43.478 0.00 0.00 0.00 4.17
4884 5426 7.159372 GGGCCGAATTTACTGATATAAGAGAA 58.841 38.462 0.00 0.00 0.00 2.87
4937 5479 2.959599 TCGCCGTATCGTGCATGC 60.960 61.111 11.82 11.82 0.00 4.06
5054 5602 4.894114 ACACCACTACTACTGAGACACTTT 59.106 41.667 0.00 0.00 0.00 2.66
5114 5698 2.067932 TTTGACACTCAGGCCCTGGG 62.068 60.000 9.73 9.73 38.07 4.45
5115 5699 0.890996 GTTTGACACTCAGGCCCTGG 60.891 60.000 11.68 4.22 31.51 4.45
5116 5700 0.890996 GGTTTGACACTCAGGCCCTG 60.891 60.000 3.69 3.69 0.00 4.45
5117 5701 1.456287 GGTTTGACACTCAGGCCCT 59.544 57.895 0.00 0.00 0.00 5.19
5118 5702 1.603739 GGGTTTGACACTCAGGCCC 60.604 63.158 0.00 0.00 35.88 5.80
5119 5703 1.603739 GGGGTTTGACACTCAGGCC 60.604 63.158 0.00 0.00 0.00 5.19
5120 5704 0.178990 AAGGGGTTTGACACTCAGGC 60.179 55.000 0.00 0.00 0.00 4.85
5121 5705 2.158608 AGAAAGGGGTTTGACACTCAGG 60.159 50.000 0.00 0.00 0.00 3.86
5122 5706 3.214696 AGAAAGGGGTTTGACACTCAG 57.785 47.619 0.00 0.00 0.00 3.35
5123 5707 3.662759 AAGAAAGGGGTTTGACACTCA 57.337 42.857 0.00 0.00 0.00 3.41
5124 5708 3.699538 ACAAAGAAAGGGGTTTGACACTC 59.300 43.478 1.98 0.00 37.16 3.51
5125 5709 3.699538 GACAAAGAAAGGGGTTTGACACT 59.300 43.478 1.98 0.00 37.16 3.55
5126 5710 3.181479 GGACAAAGAAAGGGGTTTGACAC 60.181 47.826 1.98 0.00 37.16 3.67
5127 5711 3.028130 GGACAAAGAAAGGGGTTTGACA 58.972 45.455 1.98 0.00 37.16 3.58
5128 5712 3.296854 AGGACAAAGAAAGGGGTTTGAC 58.703 45.455 1.98 0.00 37.16 3.18
5129 5713 3.680777 AGGACAAAGAAAGGGGTTTGA 57.319 42.857 1.98 0.00 37.16 2.69
5130 5714 4.038763 GGTTAGGACAAAGAAAGGGGTTTG 59.961 45.833 0.00 0.00 39.19 2.93
5131 5715 4.078805 AGGTTAGGACAAAGAAAGGGGTTT 60.079 41.667 0.00 0.00 0.00 3.27
5132 5716 3.465966 AGGTTAGGACAAAGAAAGGGGTT 59.534 43.478 0.00 0.00 0.00 4.11
5133 5717 3.061369 AGGTTAGGACAAAGAAAGGGGT 58.939 45.455 0.00 0.00 0.00 4.95
5134 5718 3.808834 AGGTTAGGACAAAGAAAGGGG 57.191 47.619 0.00 0.00 0.00 4.79
5135 5719 4.567116 GGGTAGGTTAGGACAAAGAAAGGG 60.567 50.000 0.00 0.00 0.00 3.95
5136 5720 4.042435 TGGGTAGGTTAGGACAAAGAAAGG 59.958 45.833 0.00 0.00 0.00 3.11
5137 5721 5.237236 TGGGTAGGTTAGGACAAAGAAAG 57.763 43.478 0.00 0.00 0.00 2.62
5138 5722 4.042435 CCTGGGTAGGTTAGGACAAAGAAA 59.958 45.833 0.00 0.00 39.39 2.52
5139 5723 3.585732 CCTGGGTAGGTTAGGACAAAGAA 59.414 47.826 0.00 0.00 39.39 2.52
5140 5724 3.178865 CCTGGGTAGGTTAGGACAAAGA 58.821 50.000 0.00 0.00 39.39 2.52
5141 5725 2.238898 CCCTGGGTAGGTTAGGACAAAG 59.761 54.545 3.97 0.00 42.96 2.77
5142 5726 2.157973 TCCCTGGGTAGGTTAGGACAAA 60.158 50.000 13.56 0.00 42.96 2.83
5143 5727 1.437945 TCCCTGGGTAGGTTAGGACAA 59.562 52.381 13.56 0.00 42.96 3.18
5144 5728 1.095130 TCCCTGGGTAGGTTAGGACA 58.905 55.000 13.56 0.00 42.96 4.02
5145 5729 1.008084 AGTCCCTGGGTAGGTTAGGAC 59.992 57.143 13.56 0.00 42.96 3.85
5146 5730 1.400941 AGTCCCTGGGTAGGTTAGGA 58.599 55.000 13.56 0.00 42.96 2.94
5147 5731 3.409804 TTAGTCCCTGGGTAGGTTAGG 57.590 52.381 13.56 0.00 42.96 2.69
5148 5732 7.525029 CGAATAATTAGTCCCTGGGTAGGTTAG 60.525 44.444 13.56 0.00 42.96 2.34
5149 5733 6.268387 CGAATAATTAGTCCCTGGGTAGGTTA 59.732 42.308 13.56 7.56 42.96 2.85
5150 5734 5.071384 CGAATAATTAGTCCCTGGGTAGGTT 59.929 44.000 13.56 5.62 42.96 3.50
5151 5735 4.591924 CGAATAATTAGTCCCTGGGTAGGT 59.408 45.833 13.56 0.00 42.96 3.08
5152 5736 4.020485 CCGAATAATTAGTCCCTGGGTAGG 60.020 50.000 13.56 0.00 44.18 3.18
5153 5737 4.591924 ACCGAATAATTAGTCCCTGGGTAG 59.408 45.833 13.56 0.00 0.00 3.18
5154 5738 4.559726 ACCGAATAATTAGTCCCTGGGTA 58.440 43.478 13.56 0.00 0.00 3.69
5174 5758 3.070429 GCAAATAGCAGCACATGTACC 57.930 47.619 0.00 0.00 44.79 3.34
5195 5790 2.738846 CGGTCAAGATGTTCACAAGAGG 59.261 50.000 0.00 0.00 0.00 3.69
5203 5798 4.475944 CAAAATGGACGGTCAAGATGTTC 58.524 43.478 10.76 0.00 0.00 3.18
5281 5894 2.618816 GGTGTTCTCATGATTGCCAGGA 60.619 50.000 0.00 0.00 34.08 3.86
5286 5899 3.366679 CCAAGTGGTGTTCTCATGATTGC 60.367 47.826 0.00 0.00 0.00 3.56
5297 5910 1.450211 CCGAGTCCCAAGTGGTGTT 59.550 57.895 0.00 0.00 34.77 3.32
5416 6030 9.182642 TGGGATTCTATAAAAGGAGTTGGATAT 57.817 33.333 0.00 0.00 0.00 1.63
5417 6031 8.575736 TGGGATTCTATAAAAGGAGTTGGATA 57.424 34.615 0.00 0.00 0.00 2.59
5418 6032 7.465900 TGGGATTCTATAAAAGGAGTTGGAT 57.534 36.000 0.00 0.00 0.00 3.41
5419 6033 6.901615 TGGGATTCTATAAAAGGAGTTGGA 57.098 37.500 0.00 0.00 0.00 3.53
5444 6058 7.255173 GCAGGTATCGGACGACATAGATATATT 60.255 40.741 0.00 0.00 0.00 1.28
5471 6085 1.068588 CATTCAATCATGGCTGCAGGG 59.931 52.381 17.12 0.00 0.00 4.45
5488 6102 2.029623 GCTCACTGCCCAATGATCATT 58.970 47.619 15.36 15.36 35.15 2.57
5499 6113 2.407090 GTTCCAAAAATGCTCACTGCC 58.593 47.619 0.00 0.00 42.00 4.85
5503 6117 4.320608 TCTTGGTTCCAAAAATGCTCAC 57.679 40.909 5.76 0.00 0.00 3.51
5506 6120 6.178607 AGAAATCTTGGTTCCAAAAATGCT 57.821 33.333 5.76 0.00 0.00 3.79
5507 6121 5.990996 TGAGAAATCTTGGTTCCAAAAATGC 59.009 36.000 5.76 0.00 0.00 3.56
5509 6123 9.933723 CTAATGAGAAATCTTGGTTCCAAAAAT 57.066 29.630 5.76 0.51 0.00 1.82
5523 6137 5.755375 TCAAGATGTCGGCTAATGAGAAATC 59.245 40.000 0.00 0.00 0.00 2.17
5536 6150 5.864474 GGCACTACTATTATCAAGATGTCGG 59.136 44.000 0.00 0.00 0.00 4.79
5558 6793 6.285224 AGTTTAAACTTTTACCCAACATGGC 58.715 36.000 15.22 0.00 35.21 4.40
5603 6838 6.334202 TCCATAAACGGGTGCAATAAAAATC 58.666 36.000 0.00 0.00 0.00 2.17
5642 6877 8.153550 AGAACTGAGTGGGATGTAAATATGATC 58.846 37.037 0.00 0.00 0.00 2.92
5694 6929 7.441760 TGTGTTTTAGACATTTAGCGGTAGAAA 59.558 33.333 0.00 0.00 41.10 2.52
5702 6937 6.413818 GTGTGTGTGTGTTTTAGACATTTAGC 59.586 38.462 0.00 0.00 41.10 3.09
5715 6950 0.248012 TCCTCGTGTGTGTGTGTGTT 59.752 50.000 0.00 0.00 0.00 3.32
5729 6964 4.519213 TCTTCTTCTACTCCTTCTCCTCG 58.481 47.826 0.00 0.00 0.00 4.63


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.