Multiple sequence alignment - TraesCS6D01G027600

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G027600 chr6D 100.000 4541 0 0 1 4541 10451654 10456194 0.000000e+00 8386
1 TraesCS6D01G027600 chr6D 82.143 168 18 10 4170 4332 62274780 62274620 2.850000e-27 134
2 TraesCS6D01G027600 chr6A 93.052 3555 207 19 337 3875 12076664 12080194 0.000000e+00 5160
3 TraesCS6D01G027600 chr6A 84.623 3232 453 33 471 3669 12055324 12058544 0.000000e+00 3175
4 TraesCS6D01G027600 chr6A 90.551 254 15 5 3917 4170 12080189 12080433 1.220000e-85 327
5 TraesCS6D01G027600 chr6A 84.483 174 20 6 3701 3871 383964654 383964823 1.010000e-36 165
6 TraesCS6D01G027600 chr6A 84.906 106 11 4 175 276 12076420 12076524 8.040000e-18 102
7 TraesCS6D01G027600 chr6B 88.137 3397 380 12 279 3662 19232761 19236147 0.000000e+00 4019
8 TraesCS6D01G027600 chr6B 85.540 3437 459 21 279 3707 19239929 19243335 0.000000e+00 3559
9 TraesCS6D01G027600 chr6B 88.417 259 25 2 3917 4170 19243336 19243594 1.590000e-79 307
10 TraesCS6D01G027600 chr6B 94.702 151 7 1 1 151 19231651 19231800 2.730000e-57 233
11 TraesCS6D01G027600 chr6B 97.101 138 4 0 1 138 19238412 19238549 2.730000e-57 233
12 TraesCS6D01G027600 chr6B 83.607 244 27 10 2399 2641 19208738 19208969 2.750000e-52 217
13 TraesCS6D01G027600 chr6B 92.063 126 10 0 151 276 19232512 19232637 1.300000e-40 178
14 TraesCS6D01G027600 chr6B 86.310 168 17 3 3704 3869 36133667 36133504 1.300000e-40 178
15 TraesCS6D01G027600 chr6B 95.775 71 3 0 206 276 19239731 19239801 1.030000e-21 115
16 TraesCS6D01G027600 chr5D 80.952 3171 541 46 422 3561 33679558 33676420 0.000000e+00 2451
17 TraesCS6D01G027600 chr5D 84.393 173 20 4 3703 3873 198954904 198955071 3.630000e-36 163
18 TraesCS6D01G027600 chr5A 80.551 2540 449 30 1050 3561 22211294 22208772 0.000000e+00 1912
19 TraesCS6D01G027600 chr5A 77.087 2252 465 38 548 2778 698451499 698449278 0.000000e+00 1253
20 TraesCS6D01G027600 chr5A 86.471 170 17 3 3702 3869 653299605 653299440 1.000000e-41 182
21 TraesCS6D01G027600 chr5A 80.357 168 20 10 4168 4329 546900906 546901066 1.030000e-21 115
22 TraesCS6D01G027600 chr1D 81.896 1751 304 10 525 2264 203268383 203270131 0.000000e+00 1465
23 TraesCS6D01G027600 chr1B 81.917 1753 300 14 525 2264 297056979 297058727 0.000000e+00 1465
24 TraesCS6D01G027600 chr1B 84.615 169 19 4 3704 3869 533863227 533863063 1.310000e-35 161
25 TraesCS6D01G027600 chr1A 81.496 1751 311 10 525 2264 257415478 257417226 0.000000e+00 1426
26 TraesCS6D01G027600 chr1A 80.120 166 24 6 4170 4332 272108716 272108875 1.030000e-21 115
27 TraesCS6D01G027600 chr4D 79.669 1692 317 17 729 2411 509537819 509536146 0.000000e+00 1194
28 TraesCS6D01G027600 chr4D 79.258 593 103 14 2941 3523 509482481 509481899 3.290000e-106 396
29 TraesCS6D01G027600 chr3A 95.026 382 8 3 4171 4541 574504544 574504163 1.410000e-164 590
30 TraesCS6D01G027600 chr4B 79.570 558 96 12 2942 3490 657272702 657273250 2.560000e-102 383
31 TraesCS6D01G027600 chr4B 77.213 610 130 7 525 1129 657270617 657271222 9.350000e-92 348
32 TraesCS6D01G027600 chr5B 81.148 366 59 8 3033 3391 25284800 25284438 7.440000e-73 285
33 TraesCS6D01G027600 chr7A 85.294 170 14 8 4171 4335 11058510 11058347 1.010000e-36 165
34 TraesCS6D01G027600 chr7A 84.483 174 20 4 3698 3869 138505719 138505551 1.010000e-36 165
35 TraesCS6D01G027600 chr7A 83.908 174 21 4 3703 3873 689378284 689378115 4.700000e-35 159
36 TraesCS6D01G027600 chr7D 83.429 175 23 3 3699 3871 390687339 390687509 1.690000e-34 158
37 TraesCS6D01G027600 chr3B 81.176 170 22 7 4171 4336 610147083 610146920 1.330000e-25 128
38 TraesCS6D01G027600 chr2A 81.437 167 19 11 4171 4329 606714219 606714381 4.770000e-25 126
39 TraesCS6D01G027600 chr2D 81.707 164 17 11 4175 4332 435573769 435573613 1.720000e-24 124
40 TraesCS6D01G027600 chr3D 81.818 154 16 9 4177 4322 264149892 264149743 7.980000e-23 119


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G027600 chr6D 10451654 10456194 4540 False 8386.000000 8386 100.000000 1 4541 1 chr6D.!!$F1 4540
1 TraesCS6D01G027600 chr6A 12055324 12058544 3220 False 3175.000000 3175 84.623000 471 3669 1 chr6A.!!$F1 3198
2 TraesCS6D01G027600 chr6A 12076420 12080433 4013 False 1863.000000 5160 89.503000 175 4170 3 chr6A.!!$F3 3995
3 TraesCS6D01G027600 chr6B 19231651 19243594 11943 False 1234.857143 4019 91.676429 1 4170 7 chr6B.!!$F2 4169
4 TraesCS6D01G027600 chr5D 33676420 33679558 3138 True 2451.000000 2451 80.952000 422 3561 1 chr5D.!!$R1 3139
5 TraesCS6D01G027600 chr5A 22208772 22211294 2522 True 1912.000000 1912 80.551000 1050 3561 1 chr5A.!!$R1 2511
6 TraesCS6D01G027600 chr5A 698449278 698451499 2221 True 1253.000000 1253 77.087000 548 2778 1 chr5A.!!$R3 2230
7 TraesCS6D01G027600 chr1D 203268383 203270131 1748 False 1465.000000 1465 81.896000 525 2264 1 chr1D.!!$F1 1739
8 TraesCS6D01G027600 chr1B 297056979 297058727 1748 False 1465.000000 1465 81.917000 525 2264 1 chr1B.!!$F1 1739
9 TraesCS6D01G027600 chr1A 257415478 257417226 1748 False 1426.000000 1426 81.496000 525 2264 1 chr1A.!!$F1 1739
10 TraesCS6D01G027600 chr4D 509536146 509537819 1673 True 1194.000000 1194 79.669000 729 2411 1 chr4D.!!$R2 1682
11 TraesCS6D01G027600 chr4D 509481899 509482481 582 True 396.000000 396 79.258000 2941 3523 1 chr4D.!!$R1 582
12 TraesCS6D01G027600 chr4B 657270617 657273250 2633 False 365.500000 383 78.391500 525 3490 2 chr4B.!!$F1 2965

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
277 993 0.108585 GTTGGCTCTCCACTCCACAA 59.891 55.000 0.00 0.0 43.33 3.33 F
1236 2102 0.031010 AGCTAGGGAAACTCCGGGAT 60.031 55.000 0.00 0.0 37.43 3.85 F
1519 2385 0.963355 GGCCGGGATGCACAAACTAA 60.963 55.000 2.18 0.0 0.00 2.24 F
2987 4163 2.158667 ACATTTTCTGGAAGGGTCGTGT 60.159 45.455 0.00 0.0 0.00 4.49 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1731 2597 0.326264 AGTCCAACTGGCTTAGGCTG 59.674 55.000 10.84 10.84 38.73 4.85 R
2411 3277 1.376553 GGGAGCTCACCAGTGAAGC 60.377 63.158 17.19 7.80 39.39 3.86 R
3331 11668 1.610379 GGAAGCCACAAAGCCCCAT 60.610 57.895 0.00 0.00 0.00 4.00 R
4174 12557 0.169451 CGTCGGTTTTTATGCCCACC 59.831 55.000 0.00 0.00 0.00 4.61 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 3.591695 AAATTGCACCACCCCATTTTT 57.408 38.095 0.00 0.00 0.00 1.94
45 46 2.738743 TCATGGATTTGGAAAGGCTCC 58.261 47.619 0.00 0.00 45.64 4.70
47 48 2.220653 TGGATTTGGAAAGGCTCCTG 57.779 50.000 0.00 0.00 45.64 3.86
104 105 6.918892 TTTACATGACAGATTGAATACCCG 57.081 37.500 0.00 0.00 0.00 5.28
120 121 1.340697 ACCCGAAATTTGCTACTCCCC 60.341 52.381 0.00 0.00 0.00 4.81
138 139 5.480772 ACTCCCCCGATCTATATTACTTGTG 59.519 44.000 0.00 0.00 0.00 3.33
145 146 7.375834 CCGATCTATATTACTTGTGGCAGTTA 58.624 38.462 0.00 0.00 0.00 2.24
168 881 9.264719 GTTATATTATAACACCAGGTAAACGCT 57.735 33.333 17.77 0.00 0.00 5.07
171 884 7.781548 ATTATAACACCAGGTAAACGCTAAG 57.218 36.000 0.00 0.00 0.00 2.18
213 926 8.777865 TGGACATTAGAGACAGTAAAATCTTG 57.222 34.615 0.00 0.00 0.00 3.02
276 992 1.754745 GTTGGCTCTCCACTCCACA 59.245 57.895 0.00 0.00 43.33 4.17
277 993 0.108585 GTTGGCTCTCCACTCCACAA 59.891 55.000 0.00 0.00 43.33 3.33
293 1130 3.818210 TCCACAAACACATACACATGGAC 59.182 43.478 0.00 0.00 36.39 4.02
294 1131 3.057596 CCACAAACACATACACATGGACC 60.058 47.826 0.00 0.00 36.39 4.46
497 1335 0.674895 CTCGCCCTCTTGGTTTCTGG 60.675 60.000 0.00 0.00 36.04 3.86
596 1449 3.655211 CTCCAGCTGGGCCAAGGT 61.655 66.667 32.23 5.84 36.21 3.50
597 1450 3.933048 CTCCAGCTGGGCCAAGGTG 62.933 68.421 32.23 29.42 43.71 4.00
621 1477 1.115326 GGCTTTGCTCCTGGTTTGGT 61.115 55.000 0.00 0.00 0.00 3.67
850 1713 4.247380 CCATCCCGCCTCAGCTCC 62.247 72.222 0.00 0.00 36.60 4.70
860 1723 1.732917 CTCAGCTCCGCGATCTCTT 59.267 57.895 8.23 0.00 0.00 2.85
876 1739 0.472471 TCTTTGGCCTTGTCGACCTT 59.528 50.000 14.12 0.00 0.00 3.50
900 1763 4.201744 CGTCTTTACAACAACAACCTCGTT 60.202 41.667 0.00 0.00 0.00 3.85
966 1829 1.073199 CGACCTGGGCTCCAACTTT 59.927 57.895 0.00 0.00 30.80 2.66
1041 1907 2.097791 GTCGCTCTACCTCAACTACCTG 59.902 54.545 0.00 0.00 0.00 4.00
1068 1934 0.529378 GCTTCCCGGAGTTCGTTCTA 59.471 55.000 0.73 0.00 37.11 2.10
1070 1936 1.134560 CTTCCCGGAGTTCGTTCTAGG 59.865 57.143 0.73 0.00 37.11 3.02
1153 2019 2.047274 TGCCGAAGAAGCTTCCCG 60.047 61.111 22.81 23.42 0.00 5.14
1176 2042 3.646162 ACCTCATGTACCTCAACTTGTCA 59.354 43.478 0.00 0.00 0.00 3.58
1183 2049 5.680619 TGTACCTCAACTTGTCAGTCAATT 58.319 37.500 0.00 0.00 35.35 2.32
1210 2076 4.203076 GCCGGATACCAGCGTCGT 62.203 66.667 5.05 0.00 0.00 4.34
1227 2093 1.614903 TCGTTGTCGAAGCTAGGGAAA 59.385 47.619 0.00 0.00 43.34 3.13
1236 2102 0.031010 AGCTAGGGAAACTCCGGGAT 60.031 55.000 0.00 0.00 37.43 3.85
1516 2382 2.569354 TTGGCCGGGATGCACAAAC 61.569 57.895 2.18 0.00 0.00 2.93
1519 2385 0.963355 GGCCGGGATGCACAAACTAA 60.963 55.000 2.18 0.00 0.00 2.24
1557 2423 3.943958 GTTTAACAAACTCACCGGTCAC 58.056 45.455 2.59 0.00 38.35 3.67
1731 2597 2.541556 GTAGAGATTGGCGAGTTGGTC 58.458 52.381 0.00 0.00 0.00 4.02
1896 2762 2.895404 AGCATTGCAAGTCTTGGATGTT 59.105 40.909 14.40 7.23 0.00 2.71
1897 2763 2.991190 GCATTGCAAGTCTTGGATGTTG 59.009 45.455 14.40 10.31 0.00 3.33
1954 2820 5.896106 ACTATCACATCACTCAGGAATCTCA 59.104 40.000 0.00 0.00 0.00 3.27
2238 3104 3.333680 AGGTGTTTAGTGTCCATCCCATT 59.666 43.478 0.00 0.00 0.00 3.16
2462 3328 5.484715 GTGGAAACTACAAGCAGTGGTATA 58.515 41.667 0.00 0.00 41.55 1.47
2475 3341 7.978099 AGCAGTGGTATATATGGATGTATCA 57.022 36.000 0.00 0.00 0.00 2.15
2477 3343 8.260818 AGCAGTGGTATATATGGATGTATCAAC 58.739 37.037 0.00 0.00 0.00 3.18
2599 3465 3.554934 TCTGTCATTGAAACCTGTTGCT 58.445 40.909 0.00 0.00 0.00 3.91
2758 3628 3.347216 TCCCAGCTTTCTAATCTGCAAC 58.653 45.455 0.00 0.00 0.00 4.17
2842 4006 2.831526 TCCATGATGGAACAACTCTCGA 59.168 45.455 12.63 0.00 45.00 4.04
2854 4018 2.797156 CAACTCTCGACTTGGACAACAG 59.203 50.000 0.00 0.00 0.00 3.16
2987 4163 2.158667 ACATTTTCTGGAAGGGTCGTGT 60.159 45.455 0.00 0.00 0.00 4.49
3322 11659 6.539173 ACACTTGTAGACCCATCAATTTACA 58.461 36.000 0.00 0.00 0.00 2.41
3324 11661 6.655003 CACTTGTAGACCCATCAATTTACAGT 59.345 38.462 0.00 0.00 0.00 3.55
3369 11712 1.067693 CGTTGAGCGCACATTGTCTA 58.932 50.000 11.47 0.00 0.00 2.59
3546 11892 4.056050 AGTTGTGCAGTAAGTAAGGTTCG 58.944 43.478 0.00 0.00 0.00 3.95
3549 11895 4.549458 TGTGCAGTAAGTAAGGTTCGTAC 58.451 43.478 0.00 0.00 0.00 3.67
3713 12081 6.314152 GTCTGCTTGAAAATAAGTACTCCCTC 59.686 42.308 0.00 0.00 0.00 4.30
3714 12082 5.497474 TGCTTGAAAATAAGTACTCCCTCC 58.503 41.667 0.00 0.00 0.00 4.30
3776 12154 6.263344 CAACATATGGAGCAAAATGAGTGAG 58.737 40.000 7.80 0.00 0.00 3.51
3840 12218 7.759465 TGTAGTCCGTAGTGAAATCTCTTAAG 58.241 38.462 0.00 0.00 0.00 1.85
3844 12222 7.177041 AGTCCGTAGTGAAATCTCTTAAGAGTT 59.823 37.037 27.59 19.05 42.23 3.01
3875 12253 4.635699 AAAACGGAGGGAGTAATGAGTT 57.364 40.909 0.00 0.00 0.00 3.01
3876 12254 4.635699 AAACGGAGGGAGTAATGAGTTT 57.364 40.909 0.00 0.00 0.00 2.66
3877 12255 4.635699 AACGGAGGGAGTAATGAGTTTT 57.364 40.909 0.00 0.00 0.00 2.43
3878 12256 5.750352 AACGGAGGGAGTAATGAGTTTTA 57.250 39.130 0.00 0.00 0.00 1.52
3879 12257 5.952347 ACGGAGGGAGTAATGAGTTTTAT 57.048 39.130 0.00 0.00 0.00 1.40
3880 12258 7.427989 AACGGAGGGAGTAATGAGTTTTATA 57.572 36.000 0.00 0.00 0.00 0.98
3881 12259 7.613551 ACGGAGGGAGTAATGAGTTTTATAT 57.386 36.000 0.00 0.00 0.00 0.86
3882 12260 7.442656 ACGGAGGGAGTAATGAGTTTTATATG 58.557 38.462 0.00 0.00 0.00 1.78
3883 12261 7.070821 ACGGAGGGAGTAATGAGTTTTATATGT 59.929 37.037 0.00 0.00 0.00 2.29
3884 12262 8.582437 CGGAGGGAGTAATGAGTTTTATATGTA 58.418 37.037 0.00 0.00 0.00 2.29
3885 12263 9.930693 GGAGGGAGTAATGAGTTTTATATGTAG 57.069 37.037 0.00 0.00 0.00 2.74
3888 12266 9.708092 GGGAGTAATGAGTTTTATATGTAGTCC 57.292 37.037 0.00 0.00 0.00 3.85
3889 12267 9.408069 GGAGTAATGAGTTTTATATGTAGTCCG 57.592 37.037 0.00 0.00 0.00 4.79
3890 12268 9.962783 GAGTAATGAGTTTTATATGTAGTCCGT 57.037 33.333 0.00 0.00 0.00 4.69
3894 12272 9.745880 AATGAGTTTTATATGTAGTCCGTAGTG 57.254 33.333 0.00 0.00 0.00 2.74
3895 12273 8.510243 TGAGTTTTATATGTAGTCCGTAGTGA 57.490 34.615 0.00 0.00 0.00 3.41
3896 12274 8.959548 TGAGTTTTATATGTAGTCCGTAGTGAA 58.040 33.333 0.00 0.00 0.00 3.18
3897 12275 9.793252 GAGTTTTATATGTAGTCCGTAGTGAAA 57.207 33.333 0.00 0.00 0.00 2.69
3902 12280 9.570468 TTATATGTAGTCCGTAGTGAAATCTCT 57.430 33.333 0.00 0.00 0.00 3.10
3903 12281 6.777213 ATGTAGTCCGTAGTGAAATCTCTT 57.223 37.500 0.00 0.00 0.00 2.85
3904 12282 7.876936 ATGTAGTCCGTAGTGAAATCTCTTA 57.123 36.000 0.00 0.00 0.00 2.10
3905 12283 7.081526 TGTAGTCCGTAGTGAAATCTCTTAC 57.918 40.000 0.00 0.00 0.00 2.34
3906 12284 5.232610 AGTCCGTAGTGAAATCTCTTACG 57.767 43.478 0.00 0.00 36.47 3.18
3907 12285 4.940046 AGTCCGTAGTGAAATCTCTTACGA 59.060 41.667 4.15 0.00 37.70 3.43
3908 12286 5.064962 AGTCCGTAGTGAAATCTCTTACGAG 59.935 44.000 4.15 0.00 37.70 4.18
3909 12287 4.940046 TCCGTAGTGAAATCTCTTACGAGT 59.060 41.667 4.15 0.00 37.70 4.18
3910 12288 5.413833 TCCGTAGTGAAATCTCTTACGAGTT 59.586 40.000 4.15 0.00 37.70 3.01
3911 12289 6.072286 TCCGTAGTGAAATCTCTTACGAGTTT 60.072 38.462 4.15 0.00 37.70 2.66
3912 12290 6.250951 CCGTAGTGAAATCTCTTACGAGTTTC 59.749 42.308 12.90 12.90 37.70 2.78
3913 12291 6.800408 CGTAGTGAAATCTCTTACGAGTTTCA 59.200 38.462 16.02 16.02 40.62 2.69
3914 12292 7.485277 CGTAGTGAAATCTCTTACGAGTTTCAT 59.515 37.037 19.69 14.50 42.35 2.57
3915 12293 9.141400 GTAGTGAAATCTCTTACGAGTTTCATT 57.859 33.333 19.69 18.42 42.35 2.57
3917 12295 9.877178 AGTGAAATCTCTTACGAGTTTCATTAT 57.123 29.630 19.69 12.11 42.35 1.28
3918 12296 9.907576 GTGAAATCTCTTACGAGTTTCATTATG 57.092 33.333 19.69 0.00 42.35 1.90
3919 12297 9.869757 TGAAATCTCTTACGAGTTTCATTATGA 57.130 29.630 16.02 0.00 39.50 2.15
3975 12353 6.586082 ACAACATTAAGCATCGATTTGTTTCC 59.414 34.615 0.00 0.00 0.00 3.13
4072 12450 2.202810 GTACCTCGCTCCAGCTGC 60.203 66.667 8.66 0.00 39.32 5.25
4171 12554 4.111016 CTCCGTGCCTCGTGCGTA 62.111 66.667 0.00 0.00 45.60 4.42
4172 12555 4.111016 TCCGTGCCTCGTGCGTAG 62.111 66.667 0.00 0.00 45.60 3.51
4175 12558 4.814294 GTGCCTCGTGCGTAGGGG 62.814 72.222 10.41 0.00 45.60 4.79
4177 12560 4.814294 GCCTCGTGCGTAGGGGTG 62.814 72.222 10.41 0.00 34.46 4.61
4178 12561 4.143333 CCTCGTGCGTAGGGGTGG 62.143 72.222 0.00 0.00 0.00 4.61
4179 12562 4.143333 CTCGTGCGTAGGGGTGGG 62.143 72.222 0.00 0.00 0.00 4.61
4182 12565 4.109675 GTGCGTAGGGGTGGGCAT 62.110 66.667 0.00 0.00 37.77 4.40
4183 12566 2.365768 TGCGTAGGGGTGGGCATA 60.366 61.111 0.00 0.00 0.00 3.14
4184 12567 1.996187 TGCGTAGGGGTGGGCATAA 60.996 57.895 0.00 0.00 0.00 1.90
4185 12568 1.225148 GCGTAGGGGTGGGCATAAA 59.775 57.895 0.00 0.00 0.00 1.40
4186 12569 0.394625 GCGTAGGGGTGGGCATAAAA 60.395 55.000 0.00 0.00 0.00 1.52
4187 12570 1.956159 GCGTAGGGGTGGGCATAAAAA 60.956 52.381 0.00 0.00 0.00 1.94
4188 12571 1.746787 CGTAGGGGTGGGCATAAAAAC 59.253 52.381 0.00 0.00 0.00 2.43
4189 12572 2.104967 GTAGGGGTGGGCATAAAAACC 58.895 52.381 0.00 0.00 0.00 3.27
4190 12573 0.613572 AGGGGTGGGCATAAAAACCG 60.614 55.000 0.00 0.00 33.24 4.44
4191 12574 0.612453 GGGGTGGGCATAAAAACCGA 60.612 55.000 0.00 0.00 33.24 4.69
4192 12575 0.528924 GGGTGGGCATAAAAACCGAC 59.471 55.000 0.00 0.00 34.22 4.79
4193 12576 0.169451 GGTGGGCATAAAAACCGACG 59.831 55.000 0.00 0.00 35.67 5.12
4194 12577 1.158434 GTGGGCATAAAAACCGACGA 58.842 50.000 0.00 0.00 0.00 4.20
4195 12578 1.536331 GTGGGCATAAAAACCGACGAA 59.464 47.619 0.00 0.00 0.00 3.85
4196 12579 1.536331 TGGGCATAAAAACCGACGAAC 59.464 47.619 0.00 0.00 0.00 3.95
4197 12580 1.135603 GGGCATAAAAACCGACGAACC 60.136 52.381 0.00 0.00 0.00 3.62
4198 12581 1.464521 GGCATAAAAACCGACGAACCG 60.465 52.381 0.00 0.00 0.00 4.44
4199 12582 1.460359 GCATAAAAACCGACGAACCGA 59.540 47.619 0.00 0.00 0.00 4.69
4200 12583 2.096318 GCATAAAAACCGACGAACCGAA 60.096 45.455 0.00 0.00 0.00 4.30
4201 12584 3.728600 CATAAAAACCGACGAACCGAAG 58.271 45.455 0.00 0.00 0.00 3.79
4202 12585 1.938625 AAAAACCGACGAACCGAAGA 58.061 45.000 0.00 0.00 0.00 2.87
4203 12586 1.211743 AAAACCGACGAACCGAAGAC 58.788 50.000 0.00 0.00 0.00 3.01
4204 12587 0.598419 AAACCGACGAACCGAAGACC 60.598 55.000 0.00 0.00 0.00 3.85
4205 12588 2.503375 CCGACGAACCGAAGACCG 60.503 66.667 0.00 0.00 38.18 4.79
4206 12589 2.557805 CGACGAACCGAAGACCGA 59.442 61.111 0.00 0.00 41.76 4.69
4207 12590 1.081906 CGACGAACCGAAGACCGAA 60.082 57.895 0.00 0.00 41.76 4.30
4208 12591 1.332882 CGACGAACCGAAGACCGAAC 61.333 60.000 0.00 0.00 41.76 3.95
4209 12592 1.005804 GACGAACCGAAGACCGAACC 61.006 60.000 0.00 0.00 41.76 3.62
4210 12593 2.084681 CGAACCGAAGACCGAACCG 61.085 63.158 0.00 0.00 41.76 4.44
4211 12594 1.286880 GAACCGAAGACCGAACCGA 59.713 57.895 0.00 0.00 41.76 4.69
4212 12595 0.318955 GAACCGAAGACCGAACCGAA 60.319 55.000 0.00 0.00 41.76 4.30
4213 12596 0.319297 AACCGAAGACCGAACCGAAG 60.319 55.000 0.00 0.00 41.76 3.79
4214 12597 2.092882 CCGAAGACCGAACCGAAGC 61.093 63.158 0.00 0.00 41.76 3.86
4215 12598 2.092882 CGAAGACCGAACCGAAGCC 61.093 63.158 0.00 0.00 41.76 4.35
4216 12599 2.048503 AAGACCGAACCGAAGCCG 60.049 61.111 0.00 0.00 0.00 5.52
4217 12600 2.482296 GAAGACCGAACCGAAGCCGA 62.482 60.000 0.00 0.00 38.22 5.54
4218 12601 2.048877 GACCGAACCGAAGCCGAA 60.049 61.111 0.00 0.00 38.22 4.30
4219 12602 1.665599 GACCGAACCGAAGCCGAAA 60.666 57.895 0.00 0.00 38.22 3.46
4220 12603 1.894223 GACCGAACCGAAGCCGAAAC 61.894 60.000 0.00 0.00 38.22 2.78
4221 12604 2.674084 CCGAACCGAAGCCGAAACC 61.674 63.158 0.00 0.00 38.22 3.27
4222 12605 2.858158 GAACCGAAGCCGAAACCG 59.142 61.111 0.00 0.00 38.22 4.44
4223 12606 1.665599 GAACCGAAGCCGAAACCGA 60.666 57.895 0.00 0.00 38.22 4.69
4224 12607 1.223417 GAACCGAAGCCGAAACCGAA 61.223 55.000 0.00 0.00 38.22 4.30
4225 12608 0.604511 AACCGAAGCCGAAACCGAAT 60.605 50.000 0.00 0.00 38.22 3.34
4226 12609 0.604511 ACCGAAGCCGAAACCGAATT 60.605 50.000 0.00 0.00 38.22 2.17
4227 12610 0.519961 CCGAAGCCGAAACCGAATTT 59.480 50.000 0.00 0.00 38.22 1.82
4228 12611 1.068816 CCGAAGCCGAAACCGAATTTT 60.069 47.619 0.00 0.00 38.22 1.82
4229 12612 2.239201 CGAAGCCGAAACCGAATTTTC 58.761 47.619 0.00 0.00 38.22 2.29
4258 12641 8.964420 TTTTTCACTGCTATAGAAAAATTCGG 57.036 30.769 3.21 0.00 42.77 4.30
4259 12642 7.681939 TTTCACTGCTATAGAAAAATTCGGT 57.318 32.000 3.21 0.00 34.02 4.69
4260 12643 7.681939 TTCACTGCTATAGAAAAATTCGGTT 57.318 32.000 3.21 0.00 34.02 4.44
4261 12644 7.681939 TCACTGCTATAGAAAAATTCGGTTT 57.318 32.000 3.21 0.00 34.02 3.27
4262 12645 8.106247 TCACTGCTATAGAAAAATTCGGTTTT 57.894 30.769 3.21 0.00 41.69 2.43
4263 12646 8.234546 TCACTGCTATAGAAAAATTCGGTTTTC 58.765 33.333 3.21 10.18 44.41 2.29
4264 12647 8.020819 CACTGCTATAGAAAAATTCGGTTTTCA 58.979 33.333 3.21 7.81 45.80 2.69
4265 12648 8.021396 ACTGCTATAGAAAAATTCGGTTTTCAC 58.979 33.333 3.21 8.29 45.80 3.18
4266 12649 7.877003 TGCTATAGAAAAATTCGGTTTTCACA 58.123 30.769 3.21 8.52 45.80 3.58
4267 12650 8.519526 TGCTATAGAAAAATTCGGTTTTCACAT 58.480 29.630 3.21 12.83 45.80 3.21
4268 12651 8.798153 GCTATAGAAAAATTCGGTTTTCACATG 58.202 33.333 3.21 0.00 45.80 3.21
4269 12652 5.905480 AGAAAAATTCGGTTTTCACATGC 57.095 34.783 16.72 0.00 45.80 4.06
4270 12653 5.355596 AGAAAAATTCGGTTTTCACATGCA 58.644 33.333 16.72 0.00 45.80 3.96
4271 12654 5.990996 AGAAAAATTCGGTTTTCACATGCAT 59.009 32.000 16.72 0.00 45.80 3.96
4272 12655 7.151308 AGAAAAATTCGGTTTTCACATGCATA 58.849 30.769 16.72 0.00 45.80 3.14
4273 12656 7.655328 AGAAAAATTCGGTTTTCACATGCATAA 59.345 29.630 16.72 0.00 45.80 1.90
4274 12657 7.721286 AAAATTCGGTTTTCACATGCATAAA 57.279 28.000 0.00 0.00 35.06 1.40
4275 12658 6.704512 AATTCGGTTTTCACATGCATAAAC 57.295 33.333 12.44 12.44 0.00 2.01
4276 12659 4.167554 TCGGTTTTCACATGCATAAACC 57.832 40.909 23.45 23.45 43.76 3.27
4278 12661 4.167554 GGTTTTCACATGCATAAACCGA 57.832 40.909 20.59 3.11 39.87 4.69
4279 12662 4.551388 GGTTTTCACATGCATAAACCGAA 58.449 39.130 20.59 8.20 39.87 4.30
4280 12663 5.167845 GGTTTTCACATGCATAAACCGAAT 58.832 37.500 20.59 0.00 39.87 3.34
4281 12664 5.637387 GGTTTTCACATGCATAAACCGAATT 59.363 36.000 20.59 0.00 39.87 2.17
4282 12665 6.147000 GGTTTTCACATGCATAAACCGAATTT 59.853 34.615 20.59 0.00 39.87 1.82
4283 12666 6.702972 TTTCACATGCATAAACCGAATTTG 57.297 33.333 0.00 0.00 0.00 2.32
4284 12667 5.635417 TCACATGCATAAACCGAATTTGA 57.365 34.783 0.00 0.00 0.00 2.69
4285 12668 6.206395 TCACATGCATAAACCGAATTTGAT 57.794 33.333 0.00 0.00 0.00 2.57
4286 12669 6.629128 TCACATGCATAAACCGAATTTGATT 58.371 32.000 0.00 0.00 0.00 2.57
4287 12670 6.751425 TCACATGCATAAACCGAATTTGATTC 59.249 34.615 0.00 0.00 35.94 2.52
4298 12681 4.003519 GAATTTGATTCGGTCAGTTCGG 57.996 45.455 0.00 0.00 38.29 4.30
4299 12682 2.536761 TTTGATTCGGTCAGTTCGGT 57.463 45.000 0.00 0.00 38.29 4.69
4300 12683 2.536761 TTGATTCGGTCAGTTCGGTT 57.463 45.000 0.00 0.00 38.29 4.44
4301 12684 2.536761 TGATTCGGTCAGTTCGGTTT 57.463 45.000 0.00 0.00 31.80 3.27
4302 12685 2.841215 TGATTCGGTCAGTTCGGTTTT 58.159 42.857 0.00 0.00 31.80 2.43
4303 12686 3.992643 TGATTCGGTCAGTTCGGTTTTA 58.007 40.909 0.00 0.00 31.80 1.52
4304 12687 3.742369 TGATTCGGTCAGTTCGGTTTTAC 59.258 43.478 0.00 0.00 31.80 2.01
4305 12688 2.886862 TCGGTCAGTTCGGTTTTACA 57.113 45.000 0.00 0.00 0.00 2.41
4306 12689 2.472816 TCGGTCAGTTCGGTTTTACAC 58.527 47.619 0.00 0.00 0.00 2.90
4307 12690 1.528161 CGGTCAGTTCGGTTTTACACC 59.472 52.381 0.00 0.00 43.16 4.16
4318 12701 4.326413 GGTTTTACACCGATTACCGAAC 57.674 45.455 0.00 0.00 41.76 3.95
4319 12702 3.745458 GGTTTTACACCGATTACCGAACA 59.255 43.478 0.00 0.00 41.76 3.18
4320 12703 4.213059 GGTTTTACACCGATTACCGAACAA 59.787 41.667 0.00 0.00 41.76 2.83
4321 12704 5.277731 GGTTTTACACCGATTACCGAACAAA 60.278 40.000 0.00 0.00 41.76 2.83
4322 12705 5.998454 TTTACACCGATTACCGAACAAAA 57.002 34.783 0.00 0.00 41.76 2.44
4323 12706 5.998454 TTACACCGATTACCGAACAAAAA 57.002 34.783 0.00 0.00 41.76 1.94
4341 12724 2.180432 AAACCGAAGTTACCCTCTGC 57.820 50.000 0.00 0.00 34.19 4.26
4342 12725 1.349067 AACCGAAGTTACCCTCTGCT 58.651 50.000 0.00 0.00 33.27 4.24
4343 12726 0.896226 ACCGAAGTTACCCTCTGCTC 59.104 55.000 0.00 0.00 0.00 4.26
4344 12727 0.895530 CCGAAGTTACCCTCTGCTCA 59.104 55.000 0.00 0.00 0.00 4.26
4345 12728 1.404315 CCGAAGTTACCCTCTGCTCAC 60.404 57.143 0.00 0.00 0.00 3.51
4346 12729 1.272490 CGAAGTTACCCTCTGCTCACA 59.728 52.381 0.00 0.00 0.00 3.58
4347 12730 2.093973 CGAAGTTACCCTCTGCTCACAT 60.094 50.000 0.00 0.00 0.00 3.21
4348 12731 3.526534 GAAGTTACCCTCTGCTCACATC 58.473 50.000 0.00 0.00 0.00 3.06
4349 12732 1.478510 AGTTACCCTCTGCTCACATCG 59.521 52.381 0.00 0.00 0.00 3.84
4350 12733 0.175760 TTACCCTCTGCTCACATCGC 59.824 55.000 0.00 0.00 0.00 4.58
4351 12734 0.684479 TACCCTCTGCTCACATCGCT 60.684 55.000 0.00 0.00 0.00 4.93
4352 12735 1.227205 CCCTCTGCTCACATCGCTC 60.227 63.158 0.00 0.00 0.00 5.03
4353 12736 1.588403 CCTCTGCTCACATCGCTCG 60.588 63.158 0.00 0.00 0.00 5.03
4354 12737 2.202663 TCTGCTCACATCGCTCGC 60.203 61.111 0.00 0.00 0.00 5.03
4355 12738 2.202716 CTGCTCACATCGCTCGCT 60.203 61.111 0.00 0.00 0.00 4.93
4356 12739 2.507769 TGCTCACATCGCTCGCTG 60.508 61.111 0.00 0.00 0.00 5.18
4357 12740 2.202663 GCTCACATCGCTCGCTGA 60.203 61.111 0.00 0.00 0.00 4.26
4358 12741 2.512301 GCTCACATCGCTCGCTGAC 61.512 63.158 0.00 0.00 0.00 3.51
4359 12742 2.202479 TCACATCGCTCGCTGACG 60.202 61.111 0.00 0.00 42.01 4.35
4360 12743 2.504899 CACATCGCTCGCTGACGT 60.505 61.111 0.00 0.00 41.18 4.34
4361 12744 1.226295 CACATCGCTCGCTGACGTA 60.226 57.895 0.00 0.00 41.18 3.57
4362 12745 1.226323 ACATCGCTCGCTGACGTAC 60.226 57.895 0.00 0.00 41.18 3.67
4363 12746 1.062685 CATCGCTCGCTGACGTACT 59.937 57.895 0.00 0.00 41.18 2.73
4364 12747 0.926174 CATCGCTCGCTGACGTACTC 60.926 60.000 0.00 0.00 41.18 2.59
4365 12748 1.090625 ATCGCTCGCTGACGTACTCT 61.091 55.000 0.00 0.00 41.18 3.24
4366 12749 1.581402 CGCTCGCTGACGTACTCTG 60.581 63.158 0.00 0.00 41.18 3.35
4367 12750 1.502640 GCTCGCTGACGTACTCTGT 59.497 57.895 0.00 0.00 41.18 3.41
4368 12751 0.725686 GCTCGCTGACGTACTCTGTA 59.274 55.000 0.00 0.00 41.18 2.74
4369 12752 1.267632 GCTCGCTGACGTACTCTGTAG 60.268 57.143 0.00 0.00 41.18 2.74
4370 12753 0.725686 TCGCTGACGTACTCTGTAGC 59.274 55.000 0.00 0.00 41.18 3.58
4371 12754 0.248134 CGCTGACGTACTCTGTAGCC 60.248 60.000 0.00 0.00 33.53 3.93
4372 12755 1.096416 GCTGACGTACTCTGTAGCCT 58.904 55.000 0.00 0.00 0.00 4.58
4373 12756 1.202200 GCTGACGTACTCTGTAGCCTG 60.202 57.143 0.00 0.00 0.00 4.85
4374 12757 2.085320 CTGACGTACTCTGTAGCCTGT 58.915 52.381 0.00 0.00 0.00 4.00
4375 12758 2.082231 TGACGTACTCTGTAGCCTGTC 58.918 52.381 0.00 0.00 0.00 3.51
4376 12759 1.401199 GACGTACTCTGTAGCCTGTCC 59.599 57.143 0.00 0.00 0.00 4.02
4377 12760 1.271762 ACGTACTCTGTAGCCTGTCCA 60.272 52.381 0.00 0.00 0.00 4.02
4378 12761 1.132643 CGTACTCTGTAGCCTGTCCAC 59.867 57.143 0.00 0.00 0.00 4.02
4379 12762 1.132643 GTACTCTGTAGCCTGTCCACG 59.867 57.143 0.00 0.00 0.00 4.94
4380 12763 1.153745 CTCTGTAGCCTGTCCACGC 60.154 63.158 0.00 0.00 0.00 5.34
4381 12764 1.877576 CTCTGTAGCCTGTCCACGCA 61.878 60.000 0.00 0.00 0.00 5.24
4382 12765 1.446792 CTGTAGCCTGTCCACGCAG 60.447 63.158 0.00 0.00 36.31 5.18
4394 12777 4.988716 ACGCAGTGTCTCCCGGGA 62.989 66.667 25.06 25.06 42.51 5.14
4395 12778 4.135153 CGCAGTGTCTCCCGGGAG 62.135 72.222 40.33 40.33 43.21 4.30
4396 12779 2.997897 GCAGTGTCTCCCGGGAGT 60.998 66.667 42.36 25.83 42.49 3.85
4397 12780 3.007973 GCAGTGTCTCCCGGGAGTC 62.008 68.421 42.36 37.66 42.49 3.36
4398 12781 1.606601 CAGTGTCTCCCGGGAGTCA 60.607 63.158 42.36 39.58 42.49 3.41
4400 12783 2.675423 TGTCTCCCGGGAGTCACG 60.675 66.667 42.36 23.73 42.49 4.35
4401 12784 4.131088 GTCTCCCGGGAGTCACGC 62.131 72.222 42.36 26.16 42.49 5.34
4410 12793 4.796231 GAGTCACGCGCCCACGAT 62.796 66.667 5.73 0.00 43.93 3.73
4411 12794 4.796231 AGTCACGCGCCCACGATC 62.796 66.667 5.73 0.00 43.93 3.69
4419 12802 3.499737 GCCCACGATCGCAACCAG 61.500 66.667 16.60 0.00 0.00 4.00
4420 12803 3.499737 CCCACGATCGCAACCAGC 61.500 66.667 16.60 0.00 40.87 4.85
4429 12812 2.098298 GCAACCAGCGCACATACG 59.902 61.111 11.47 0.00 0.00 3.06
4440 12823 2.825086 GCACATACGCGATTTCCTTT 57.175 45.000 15.93 0.00 0.00 3.11
4441 12824 2.440501 GCACATACGCGATTTCCTTTG 58.559 47.619 15.93 0.00 0.00 2.77
4442 12825 2.440501 CACATACGCGATTTCCTTTGC 58.559 47.619 15.93 0.00 0.00 3.68
4443 12826 2.095853 CACATACGCGATTTCCTTTGCT 59.904 45.455 15.93 0.00 0.00 3.91
4444 12827 2.747446 ACATACGCGATTTCCTTTGCTT 59.253 40.909 15.93 0.00 0.00 3.91
4445 12828 3.190535 ACATACGCGATTTCCTTTGCTTT 59.809 39.130 15.93 0.00 0.00 3.51
4446 12829 2.793278 ACGCGATTTCCTTTGCTTTT 57.207 40.000 15.93 0.00 0.00 2.27
4447 12830 3.092334 ACGCGATTTCCTTTGCTTTTT 57.908 38.095 15.93 0.00 0.00 1.94
4473 12856 4.471157 TTTTTATCGTTCGCTTTCCGTT 57.529 36.364 0.00 0.00 38.35 4.44
4474 12857 3.443054 TTTATCGTTCGCTTTCCGTTG 57.557 42.857 0.00 0.00 38.35 4.10
4475 12858 0.717224 TATCGTTCGCTTTCCGTTGC 59.283 50.000 0.00 0.00 38.35 4.17
4476 12859 0.949105 ATCGTTCGCTTTCCGTTGCT 60.949 50.000 0.00 0.00 38.35 3.91
4477 12860 1.438710 CGTTCGCTTTCCGTTGCTG 60.439 57.895 0.00 0.00 38.35 4.41
4478 12861 1.725973 GTTCGCTTTCCGTTGCTGC 60.726 57.895 0.00 0.00 38.35 5.25
4479 12862 2.183504 TTCGCTTTCCGTTGCTGCA 61.184 52.632 0.00 0.00 38.35 4.41
4480 12863 2.116736 TTCGCTTTCCGTTGCTGCAG 62.117 55.000 10.11 10.11 38.35 4.41
4481 12864 2.429739 GCTTTCCGTTGCTGCAGC 60.430 61.111 31.89 31.89 42.50 5.25
4491 12874 2.662857 GCTGCAGCACGTCTCACA 60.663 61.111 33.36 0.00 41.59 3.58
4492 12875 2.947890 GCTGCAGCACGTCTCACAC 61.948 63.158 33.36 0.00 41.59 3.82
4493 12876 1.592400 CTGCAGCACGTCTCACACA 60.592 57.895 0.00 0.00 0.00 3.72
4494 12877 0.947660 CTGCAGCACGTCTCACACAT 60.948 55.000 0.00 0.00 0.00 3.21
4495 12878 0.316841 TGCAGCACGTCTCACACATA 59.683 50.000 0.00 0.00 0.00 2.29
4496 12879 1.270041 TGCAGCACGTCTCACACATAA 60.270 47.619 0.00 0.00 0.00 1.90
4497 12880 1.126846 GCAGCACGTCTCACACATAAC 59.873 52.381 0.00 0.00 0.00 1.89
4498 12881 1.386748 CAGCACGTCTCACACATAACG 59.613 52.381 0.00 0.00 40.77 3.18
4508 12891 1.495509 CACATAACGTGCGTGGTGG 59.504 57.895 13.07 2.14 39.19 4.61
4509 12892 1.669760 ACATAACGTGCGTGGTGGG 60.670 57.895 0.00 0.00 0.00 4.61
4510 12893 2.744709 ATAACGTGCGTGGTGGGC 60.745 61.111 0.00 0.00 0.00 5.36
4511 12894 4.992511 TAACGTGCGTGGTGGGCC 62.993 66.667 0.00 0.00 0.00 5.80
4515 12898 4.323477 GTGCGTGGTGGGCCTACA 62.323 66.667 21.99 6.01 35.27 2.74
4516 12899 3.326578 TGCGTGGTGGGCCTACAT 61.327 61.111 21.99 0.00 35.27 2.29
4517 12900 2.824041 GCGTGGTGGGCCTACATG 60.824 66.667 21.99 14.46 35.27 3.21
4518 12901 2.124736 CGTGGTGGGCCTACATGG 60.125 66.667 21.99 4.92 39.35 3.66
4528 12911 2.511818 CCTACATGGCCGTAGTCCA 58.488 57.895 14.50 0.00 42.97 4.02
4533 12916 3.073378 TGGCCGTAGTCCATGCAA 58.927 55.556 0.00 0.00 19.43 4.08
4534 12917 1.078497 TGGCCGTAGTCCATGCAAG 60.078 57.895 0.00 0.00 19.43 4.01
4535 12918 1.819632 GGCCGTAGTCCATGCAAGG 60.820 63.158 0.19 0.19 0.00 3.61
4536 12919 1.220749 GCCGTAGTCCATGCAAGGA 59.779 57.895 6.57 6.57 34.64 3.36
4537 12920 0.179045 GCCGTAGTCCATGCAAGGAT 60.179 55.000 14.79 6.09 40.42 3.24
4538 12921 1.586422 CCGTAGTCCATGCAAGGATG 58.414 55.000 14.79 4.88 40.42 3.51
4539 12922 1.586422 CGTAGTCCATGCAAGGATGG 58.414 55.000 14.79 13.75 43.96 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 5.124297 GCCTTTCCAAATCCATGAAAAATGG 59.876 40.000 0.00 0.00 40.48 3.16
25 26 2.738743 GGAGCCTTTCCAAATCCATGA 58.261 47.619 0.00 0.00 46.01 3.07
45 46 3.885297 AGACTTCATGGTTTGGTTGACAG 59.115 43.478 0.00 0.00 0.00 3.51
47 48 4.580580 AGAAGACTTCATGGTTTGGTTGAC 59.419 41.667 17.34 0.00 0.00 3.18
104 105 2.413310 TCGGGGGAGTAGCAAATTTC 57.587 50.000 0.00 0.00 0.00 2.17
120 121 5.784177 ACTGCCACAAGTAATATAGATCGG 58.216 41.667 0.00 0.00 0.00 4.18
138 139 9.563748 TTTACCTGGTGTTATAATATAACTGCC 57.436 33.333 20.02 20.00 0.00 4.85
145 146 9.485206 CTTAGCGTTTACCTGGTGTTATAATAT 57.515 33.333 10.23 0.00 0.00 1.28
168 881 0.630673 AATGCCCCATGCTGTCCTTA 59.369 50.000 0.00 0.00 42.00 2.69
170 883 0.974010 CAAATGCCCCATGCTGTCCT 60.974 55.000 0.00 0.00 42.00 3.85
171 884 1.518774 CAAATGCCCCATGCTGTCC 59.481 57.895 0.00 0.00 42.00 4.02
213 926 3.926616 TCATTTCCCGTTCTCACTTCTC 58.073 45.455 0.00 0.00 0.00 2.87
276 992 4.098914 AGTGGTCCATGTGTATGTGTTT 57.901 40.909 0.00 0.00 32.21 2.83
277 993 3.788227 AGTGGTCCATGTGTATGTGTT 57.212 42.857 0.00 0.00 32.21 3.32
293 1130 2.231478 AGTGTAGACCATCGACAAGTGG 59.769 50.000 1.14 1.14 33.93 4.00
294 1131 3.577649 AGTGTAGACCATCGACAAGTG 57.422 47.619 0.00 0.00 33.93 3.16
484 1322 2.335712 GGCCGCCAGAAACCAAGAG 61.336 63.158 3.91 0.00 0.00 2.85
514 1355 3.692406 GGCCTCCGACTCCGTTGT 61.692 66.667 0.00 0.00 0.00 3.32
621 1477 1.372838 CGGTGTTGTTGCAGGACACA 61.373 55.000 22.43 7.99 44.07 3.72
699 1561 0.742990 CGGGAAAAGCTGCGGTATCA 60.743 55.000 0.00 0.00 0.00 2.15
813 1675 2.975536 CCCTCGAACCCGTTGCTA 59.024 61.111 0.00 0.00 37.05 3.49
850 1713 1.021390 ACAAGGCCAAAGAGATCGCG 61.021 55.000 5.01 0.00 0.00 5.87
855 1718 0.034896 GGTCGACAAGGCCAAAGAGA 59.965 55.000 18.91 0.00 46.14 3.10
876 1739 3.552699 CGAGGTTGTTGTTGTAAAGACGA 59.447 43.478 0.00 0.00 0.00 4.20
934 1797 0.462047 AGGTCGAAATGCACGATCCC 60.462 55.000 4.97 1.57 41.07 3.85
966 1829 1.640917 GGTAGTCTGGGTTGGTGAGA 58.359 55.000 0.00 0.00 0.00 3.27
1041 1907 3.316573 CTCCGGGAAGCCACCAGTC 62.317 68.421 0.00 0.00 0.00 3.51
1047 1913 2.444700 GAACGAACTCCGGGAAGCCA 62.445 60.000 0.00 0.00 43.93 4.75
1068 1934 1.958288 AGGTGATGTTACTGCTCCCT 58.042 50.000 0.00 0.00 0.00 4.20
1070 1936 2.766828 AGGTAGGTGATGTTACTGCTCC 59.233 50.000 0.00 0.00 0.00 4.70
1153 2019 4.246458 GACAAGTTGAGGTACATGAGGTC 58.754 47.826 10.54 0.00 0.00 3.85
1176 2042 1.065854 CGGCCAGAGAAGGAATTGACT 60.066 52.381 2.24 0.00 0.00 3.41
1183 2049 0.759436 GGTATCCGGCCAGAGAAGGA 60.759 60.000 2.24 0.00 37.17 3.36
1210 2076 2.028385 GGAGTTTCCCTAGCTTCGACAA 60.028 50.000 0.00 0.00 0.00 3.18
1350 2216 3.126703 TTGGAGCCGGCCAAGAACA 62.127 57.895 26.15 10.58 42.75 3.18
1397 2263 2.508300 GGAATAGTGGAAACCAGGCCTA 59.492 50.000 3.98 0.00 32.34 3.93
1516 2382 8.874816 GTTAAACTCTATGCCAAACTCTCTTAG 58.125 37.037 0.00 0.00 0.00 2.18
1519 2385 6.769512 TGTTAAACTCTATGCCAAACTCTCT 58.230 36.000 0.00 0.00 0.00 3.10
1557 2423 2.393764 GTGAACAAAACTGCCGGAATG 58.606 47.619 5.05 0.00 0.00 2.67
1731 2597 0.326264 AGTCCAACTGGCTTAGGCTG 59.674 55.000 10.84 10.84 38.73 4.85
1932 2798 6.382282 ACTTGAGATTCCTGAGTGATGTGATA 59.618 38.462 0.00 0.00 0.00 2.15
1954 2820 1.272769 GTCGAACAGGCTGAGGTACTT 59.727 52.381 23.66 3.07 41.55 2.24
2238 3104 4.584325 CCTGAAACATCCAAGAAGTCCAAA 59.416 41.667 0.00 0.00 0.00 3.28
2411 3277 1.376553 GGGAGCTCACCAGTGAAGC 60.377 63.158 17.19 7.80 39.39 3.86
2462 3328 6.218195 ACCCATTGGTTGATACATCCATAT 57.782 37.500 1.20 0.00 44.75 1.78
2477 3343 2.614134 TTTACCCCAGAACCCATTGG 57.386 50.000 0.00 0.00 37.80 3.16
2599 3465 4.377839 GCTCTAGTGTGATGAGCTTACA 57.622 45.455 6.92 0.00 46.69 2.41
2842 4006 3.144506 CAGAAGATGCTGTTGTCCAAGT 58.855 45.455 0.00 0.00 0.00 3.16
2854 4018 3.380637 ACATCATGCCTTTCAGAAGATGC 59.619 43.478 7.43 2.00 36.60 3.91
2987 4163 7.664082 TCAATTGTTTTCTGAAAAGTTTGCA 57.336 28.000 15.39 7.31 0.00 4.08
3091 4267 9.956640 ATGATTTCTAGACAAGTTCAAGAATCT 57.043 29.630 0.00 0.00 0.00 2.40
3322 11659 4.023291 CCACAAAGCCCCATATTGTTACT 58.977 43.478 0.00 0.00 35.22 2.24
3324 11661 2.763448 GCCACAAAGCCCCATATTGTTA 59.237 45.455 0.00 0.00 35.22 2.41
3331 11668 1.610379 GGAAGCCACAAAGCCCCAT 60.610 57.895 0.00 0.00 0.00 4.00
3369 11712 2.569404 GTGGTCTTGAGTTCCCTCATCT 59.431 50.000 0.00 0.00 46.80 2.90
3546 11892 2.835764 TCCACATTACACCTGAGGGTAC 59.164 50.000 2.38 0.00 45.41 3.34
3549 11895 3.652057 AATCCACATTACACCTGAGGG 57.348 47.619 2.38 0.00 38.88 4.30
3740 12118 6.154445 GCTCCATATGTTGCCATATTGAAAG 58.846 40.000 1.24 0.00 41.35 2.62
3753 12131 5.948162 ACTCACTCATTTTGCTCCATATGTT 59.052 36.000 1.24 0.00 0.00 2.71
3840 12218 9.999009 CTCCCTCCGTTTTTAAATATAAAACTC 57.001 33.333 9.51 0.00 39.94 3.01
3876 12254 9.570468 AGAGATTTCACTACGGACTACATATAA 57.430 33.333 0.00 0.00 0.00 0.98
3877 12255 9.570468 AAGAGATTTCACTACGGACTACATATA 57.430 33.333 0.00 0.00 0.00 0.86
3878 12256 8.466617 AAGAGATTTCACTACGGACTACATAT 57.533 34.615 0.00 0.00 0.00 1.78
3879 12257 7.876936 AAGAGATTTCACTACGGACTACATA 57.123 36.000 0.00 0.00 0.00 2.29
3880 12258 6.777213 AAGAGATTTCACTACGGACTACAT 57.223 37.500 0.00 0.00 0.00 2.29
3881 12259 6.183360 CGTAAGAGATTTCACTACGGACTACA 60.183 42.308 8.98 0.00 43.02 2.74
3882 12260 6.036517 TCGTAAGAGATTTCACTACGGACTAC 59.963 42.308 14.09 0.00 45.01 2.73
3883 12261 6.108687 TCGTAAGAGATTTCACTACGGACTA 58.891 40.000 14.09 0.00 45.01 2.59
3884 12262 4.940046 TCGTAAGAGATTTCACTACGGACT 59.060 41.667 14.09 0.00 45.01 3.85
3885 12263 5.227238 TCGTAAGAGATTTCACTACGGAC 57.773 43.478 14.09 0.00 45.01 4.79
3901 12279 8.276325 GGCAATACTCATAATGAAACTCGTAAG 58.724 37.037 0.00 0.00 0.00 2.34
3902 12280 7.766738 TGGCAATACTCATAATGAAACTCGTAA 59.233 33.333 0.00 0.00 0.00 3.18
3903 12281 7.223971 GTGGCAATACTCATAATGAAACTCGTA 59.776 37.037 0.00 0.00 0.00 3.43
3904 12282 6.037172 GTGGCAATACTCATAATGAAACTCGT 59.963 38.462 0.00 0.00 0.00 4.18
3905 12283 6.422223 GTGGCAATACTCATAATGAAACTCG 58.578 40.000 0.00 0.00 0.00 4.18
3906 12284 6.318648 TGGTGGCAATACTCATAATGAAACTC 59.681 38.462 0.00 0.00 0.00 3.01
3907 12285 6.186957 TGGTGGCAATACTCATAATGAAACT 58.813 36.000 0.00 0.00 0.00 2.66
3908 12286 6.449635 TGGTGGCAATACTCATAATGAAAC 57.550 37.500 0.00 0.00 0.00 2.78
3909 12287 8.938801 ATATGGTGGCAATACTCATAATGAAA 57.061 30.769 0.00 0.00 0.00 2.69
3910 12288 8.938801 AATATGGTGGCAATACTCATAATGAA 57.061 30.769 0.00 0.00 0.00 2.57
3911 12289 8.938801 AAATATGGTGGCAATACTCATAATGA 57.061 30.769 0.00 0.00 0.00 2.57
3916 12294 8.806146 GGATTTAAATATGGTGGCAATACTCAT 58.194 33.333 0.00 0.00 0.00 2.90
3917 12295 8.004215 AGGATTTAAATATGGTGGCAATACTCA 58.996 33.333 0.00 0.00 0.00 3.41
3918 12296 8.299570 CAGGATTTAAATATGGTGGCAATACTC 58.700 37.037 0.00 0.00 0.00 2.59
3919 12297 7.255942 GCAGGATTTAAATATGGTGGCAATACT 60.256 37.037 0.00 0.00 0.00 2.12
3975 12353 8.702163 AGAATTGGTACTTGTTTTTGTTGAAG 57.298 30.769 0.00 0.00 0.00 3.02
4092 12470 3.649277 CTCCGGGTTCGCCACTCAG 62.649 68.421 0.00 0.00 39.65 3.35
4170 12553 1.341187 CGGTTTTTATGCCCACCCCTA 60.341 52.381 0.00 0.00 0.00 3.53
4171 12554 0.613572 CGGTTTTTATGCCCACCCCT 60.614 55.000 0.00 0.00 0.00 4.79
4172 12555 0.612453 TCGGTTTTTATGCCCACCCC 60.612 55.000 0.00 0.00 0.00 4.95
4173 12556 0.528924 GTCGGTTTTTATGCCCACCC 59.471 55.000 0.00 0.00 0.00 4.61
4174 12557 0.169451 CGTCGGTTTTTATGCCCACC 59.831 55.000 0.00 0.00 0.00 4.61
4175 12558 1.158434 TCGTCGGTTTTTATGCCCAC 58.842 50.000 0.00 0.00 0.00 4.61
4176 12559 1.536331 GTTCGTCGGTTTTTATGCCCA 59.464 47.619 0.00 0.00 0.00 5.36
4177 12560 1.135603 GGTTCGTCGGTTTTTATGCCC 60.136 52.381 0.00 0.00 0.00 5.36
4178 12561 1.464521 CGGTTCGTCGGTTTTTATGCC 60.465 52.381 0.00 0.00 0.00 4.40
4179 12562 1.460359 TCGGTTCGTCGGTTTTTATGC 59.540 47.619 0.00 0.00 0.00 3.14
4180 12563 3.429543 TCTTCGGTTCGTCGGTTTTTATG 59.570 43.478 0.00 0.00 0.00 1.90
4181 12564 3.429881 GTCTTCGGTTCGTCGGTTTTTAT 59.570 43.478 0.00 0.00 0.00 1.40
4182 12565 2.794350 GTCTTCGGTTCGTCGGTTTTTA 59.206 45.455 0.00 0.00 0.00 1.52
4183 12566 1.594397 GTCTTCGGTTCGTCGGTTTTT 59.406 47.619 0.00 0.00 0.00 1.94
4184 12567 1.211743 GTCTTCGGTTCGTCGGTTTT 58.788 50.000 0.00 0.00 0.00 2.43
4185 12568 0.598419 GGTCTTCGGTTCGTCGGTTT 60.598 55.000 0.00 0.00 0.00 3.27
4186 12569 1.006922 GGTCTTCGGTTCGTCGGTT 60.007 57.895 0.00 0.00 0.00 4.44
4187 12570 2.647297 GGTCTTCGGTTCGTCGGT 59.353 61.111 0.00 0.00 0.00 4.69
4188 12571 2.462255 TTCGGTCTTCGGTTCGTCGG 62.462 60.000 0.00 0.00 39.77 4.79
4189 12572 1.081906 TTCGGTCTTCGGTTCGTCG 60.082 57.895 0.00 0.00 39.77 5.12
4190 12573 1.005804 GGTTCGGTCTTCGGTTCGTC 61.006 60.000 0.00 0.00 39.77 4.20
4191 12574 1.006922 GGTTCGGTCTTCGGTTCGT 60.007 57.895 0.00 0.00 39.77 3.85
4192 12575 2.084681 CGGTTCGGTCTTCGGTTCG 61.085 63.158 0.00 0.00 39.77 3.95
4193 12576 0.318955 TTCGGTTCGGTCTTCGGTTC 60.319 55.000 0.00 0.00 39.77 3.62
4194 12577 0.319297 CTTCGGTTCGGTCTTCGGTT 60.319 55.000 0.00 0.00 39.77 4.44
4195 12578 1.288127 CTTCGGTTCGGTCTTCGGT 59.712 57.895 0.00 0.00 39.77 4.69
4196 12579 2.092882 GCTTCGGTTCGGTCTTCGG 61.093 63.158 0.00 0.00 39.77 4.30
4197 12580 2.092882 GGCTTCGGTTCGGTCTTCG 61.093 63.158 0.00 0.00 40.90 3.79
4198 12581 2.092882 CGGCTTCGGTTCGGTCTTC 61.093 63.158 0.00 0.00 0.00 2.87
4199 12582 2.048503 CGGCTTCGGTTCGGTCTT 60.049 61.111 0.00 0.00 0.00 3.01
4200 12583 2.091102 TTTCGGCTTCGGTTCGGTCT 62.091 55.000 0.00 0.00 34.13 3.85
4201 12584 1.665599 TTTCGGCTTCGGTTCGGTC 60.666 57.895 0.00 0.00 34.13 4.79
4202 12585 1.957695 GTTTCGGCTTCGGTTCGGT 60.958 57.895 0.00 0.00 34.13 4.69
4203 12586 2.674084 GGTTTCGGCTTCGGTTCGG 61.674 63.158 0.00 0.00 34.13 4.30
4204 12587 2.858158 GGTTTCGGCTTCGGTTCG 59.142 61.111 0.00 0.00 34.13 3.95
4205 12588 1.223417 TTCGGTTTCGGCTTCGGTTC 61.223 55.000 0.00 0.00 36.95 3.62
4206 12589 0.604511 ATTCGGTTTCGGCTTCGGTT 60.605 50.000 0.00 0.00 36.95 4.44
4207 12590 0.604511 AATTCGGTTTCGGCTTCGGT 60.605 50.000 0.00 0.00 36.95 4.69
4208 12591 0.519961 AAATTCGGTTTCGGCTTCGG 59.480 50.000 0.00 0.00 36.95 4.30
4209 12592 2.239201 GAAAATTCGGTTTCGGCTTCG 58.761 47.619 0.00 0.00 36.95 3.79
4233 12616 8.573035 ACCGAATTTTTCTATAGCAGTGAAAAA 58.427 29.630 16.12 16.12 46.55 1.94
4234 12617 8.106247 ACCGAATTTTTCTATAGCAGTGAAAA 57.894 30.769 0.00 0.00 37.74 2.29
4235 12618 7.681939 ACCGAATTTTTCTATAGCAGTGAAA 57.318 32.000 0.00 0.00 0.00 2.69
4236 12619 7.681939 AACCGAATTTTTCTATAGCAGTGAA 57.318 32.000 0.00 0.00 0.00 3.18
4237 12620 7.681939 AAACCGAATTTTTCTATAGCAGTGA 57.318 32.000 0.00 0.00 0.00 3.41
4238 12621 8.020819 TGAAAACCGAATTTTTCTATAGCAGTG 58.979 33.333 14.15 0.00 43.23 3.66
4239 12622 8.021396 GTGAAAACCGAATTTTTCTATAGCAGT 58.979 33.333 14.15 0.00 43.23 4.40
4240 12623 8.020819 TGTGAAAACCGAATTTTTCTATAGCAG 58.979 33.333 14.15 0.00 43.23 4.24
4241 12624 7.877003 TGTGAAAACCGAATTTTTCTATAGCA 58.123 30.769 14.15 0.00 43.23 3.49
4242 12625 8.798153 CATGTGAAAACCGAATTTTTCTATAGC 58.202 33.333 14.15 0.00 43.23 2.97
4243 12626 8.798153 GCATGTGAAAACCGAATTTTTCTATAG 58.202 33.333 14.15 0.00 43.23 1.31
4244 12627 8.300286 TGCATGTGAAAACCGAATTTTTCTATA 58.700 29.630 14.15 5.35 43.23 1.31
4245 12628 7.151308 TGCATGTGAAAACCGAATTTTTCTAT 58.849 30.769 14.15 8.57 43.23 1.98
4246 12629 6.507900 TGCATGTGAAAACCGAATTTTTCTA 58.492 32.000 14.15 7.24 43.23 2.10
4247 12630 5.355596 TGCATGTGAAAACCGAATTTTTCT 58.644 33.333 14.15 0.00 43.23 2.52
4248 12631 5.649602 TGCATGTGAAAACCGAATTTTTC 57.350 34.783 0.00 8.90 40.73 2.29
4249 12632 7.721286 TTATGCATGTGAAAACCGAATTTTT 57.279 28.000 10.16 0.00 40.73 1.94
4250 12633 7.307692 GGTTTATGCATGTGAAAACCGAATTTT 60.308 33.333 20.59 0.00 43.44 1.82
4251 12634 6.147000 GGTTTATGCATGTGAAAACCGAATTT 59.853 34.615 20.59 0.00 40.90 1.82
4252 12635 5.637387 GGTTTATGCATGTGAAAACCGAATT 59.363 36.000 20.59 0.00 40.90 2.17
4253 12636 5.167845 GGTTTATGCATGTGAAAACCGAAT 58.832 37.500 20.59 0.00 40.90 3.34
4254 12637 4.551388 GGTTTATGCATGTGAAAACCGAA 58.449 39.130 20.59 0.00 40.90 4.30
4255 12638 4.167554 GGTTTATGCATGTGAAAACCGA 57.832 40.909 20.59 0.00 40.90 4.69
4257 12640 4.167554 TCGGTTTATGCATGTGAAAACC 57.832 40.909 23.45 23.45 44.77 3.27
4258 12641 6.704512 AATTCGGTTTATGCATGTGAAAAC 57.295 33.333 10.16 11.58 0.00 2.43
4259 12642 6.925718 TCAAATTCGGTTTATGCATGTGAAAA 59.074 30.769 10.16 0.00 0.00 2.29
4260 12643 6.450545 TCAAATTCGGTTTATGCATGTGAAA 58.549 32.000 10.16 0.00 0.00 2.69
4261 12644 6.018589 TCAAATTCGGTTTATGCATGTGAA 57.981 33.333 10.16 6.42 0.00 3.18
4262 12645 5.635417 TCAAATTCGGTTTATGCATGTGA 57.365 34.783 10.16 0.00 0.00 3.58
4263 12646 6.890663 AATCAAATTCGGTTTATGCATGTG 57.109 33.333 10.16 0.00 0.00 3.21
4277 12660 3.435671 ACCGAACTGACCGAATCAAATTC 59.564 43.478 0.00 0.00 36.69 2.17
4278 12661 3.408634 ACCGAACTGACCGAATCAAATT 58.591 40.909 0.00 0.00 36.69 1.82
4279 12662 3.053831 ACCGAACTGACCGAATCAAAT 57.946 42.857 0.00 0.00 36.69 2.32
4280 12663 2.536761 ACCGAACTGACCGAATCAAA 57.463 45.000 0.00 0.00 36.69 2.69
4281 12664 2.536761 AACCGAACTGACCGAATCAA 57.463 45.000 0.00 0.00 36.69 2.57
4282 12665 2.536761 AAACCGAACTGACCGAATCA 57.463 45.000 0.00 0.00 35.45 2.57
4283 12666 3.742369 TGTAAAACCGAACTGACCGAATC 59.258 43.478 0.00 0.00 0.00 2.52
4284 12667 3.495753 GTGTAAAACCGAACTGACCGAAT 59.504 43.478 0.00 0.00 0.00 3.34
4285 12668 2.865551 GTGTAAAACCGAACTGACCGAA 59.134 45.455 0.00 0.00 0.00 4.30
4286 12669 2.472816 GTGTAAAACCGAACTGACCGA 58.527 47.619 0.00 0.00 0.00 4.69
4287 12670 1.528161 GGTGTAAAACCGAACTGACCG 59.472 52.381 0.00 0.00 39.81 4.79
4297 12680 3.745458 TGTTCGGTAATCGGTGTAAAACC 59.255 43.478 0.00 0.00 46.60 3.27
4298 12681 4.988708 TGTTCGGTAATCGGTGTAAAAC 57.011 40.909 0.00 0.00 39.77 2.43
4299 12682 5.998454 TTTGTTCGGTAATCGGTGTAAAA 57.002 34.783 0.00 0.00 39.77 1.52
4300 12683 5.998454 TTTTGTTCGGTAATCGGTGTAAA 57.002 34.783 0.00 0.00 39.77 2.01
4301 12684 5.998454 TTTTTGTTCGGTAATCGGTGTAA 57.002 34.783 0.00 0.00 39.77 2.41
4327 12710 3.526534 GATGTGAGCAGAGGGTAACTTC 58.473 50.000 0.00 0.00 44.51 3.01
4328 12711 2.093973 CGATGTGAGCAGAGGGTAACTT 60.094 50.000 0.00 0.00 0.00 2.66
4329 12712 1.478510 CGATGTGAGCAGAGGGTAACT 59.521 52.381 0.00 0.00 0.00 2.24
4330 12713 1.927895 CGATGTGAGCAGAGGGTAAC 58.072 55.000 0.00 0.00 0.00 2.50
4331 12714 0.175760 GCGATGTGAGCAGAGGGTAA 59.824 55.000 0.00 0.00 34.19 2.85
4332 12715 0.684479 AGCGATGTGAGCAGAGGGTA 60.684 55.000 0.00 0.00 37.01 3.69
4333 12716 1.954362 GAGCGATGTGAGCAGAGGGT 61.954 60.000 0.00 0.00 37.01 4.34
4334 12717 1.227205 GAGCGATGTGAGCAGAGGG 60.227 63.158 0.00 0.00 37.01 4.30
4335 12718 1.588403 CGAGCGATGTGAGCAGAGG 60.588 63.158 0.00 0.00 37.01 3.69
4336 12719 2.229589 GCGAGCGATGTGAGCAGAG 61.230 63.158 0.00 0.00 37.01 3.35
4337 12720 2.202663 GCGAGCGATGTGAGCAGA 60.203 61.111 0.00 0.00 37.01 4.26
4338 12721 2.202716 AGCGAGCGATGTGAGCAG 60.203 61.111 0.00 0.00 37.01 4.24
4339 12722 2.507769 CAGCGAGCGATGTGAGCA 60.508 61.111 0.00 0.00 37.01 4.26
4340 12723 2.202663 TCAGCGAGCGATGTGAGC 60.203 61.111 8.03 0.00 32.75 4.26
4341 12724 2.220224 CGTCAGCGAGCGATGTGAG 61.220 63.158 8.03 0.00 41.33 3.51
4342 12725 1.641123 TACGTCAGCGAGCGATGTGA 61.641 55.000 17.96 3.67 42.00 3.58
4343 12726 1.226295 TACGTCAGCGAGCGATGTG 60.226 57.895 17.96 5.03 42.00 3.21
4344 12727 1.226323 GTACGTCAGCGAGCGATGT 60.226 57.895 8.03 15.02 42.00 3.06
4345 12728 0.926174 GAGTACGTCAGCGAGCGATG 60.926 60.000 1.16 1.16 42.00 3.84
4346 12729 1.090625 AGAGTACGTCAGCGAGCGAT 61.091 55.000 0.00 0.00 42.00 4.58
4347 12730 1.740664 AGAGTACGTCAGCGAGCGA 60.741 57.895 0.00 0.00 42.00 4.93
4348 12731 1.581402 CAGAGTACGTCAGCGAGCG 60.581 63.158 0.00 0.00 42.00 5.03
4349 12732 0.725686 TACAGAGTACGTCAGCGAGC 59.274 55.000 0.00 0.00 42.00 5.03
4350 12733 1.267632 GCTACAGAGTACGTCAGCGAG 60.268 57.143 0.00 0.00 42.00 5.03
4351 12734 0.725686 GCTACAGAGTACGTCAGCGA 59.274 55.000 0.00 0.00 42.00 4.93
4352 12735 0.248134 GGCTACAGAGTACGTCAGCG 60.248 60.000 0.00 0.00 44.93 5.18
4353 12736 1.096416 AGGCTACAGAGTACGTCAGC 58.904 55.000 0.00 0.00 0.00 4.26
4354 12737 2.085320 ACAGGCTACAGAGTACGTCAG 58.915 52.381 0.00 0.00 0.00 3.51
4355 12738 2.082231 GACAGGCTACAGAGTACGTCA 58.918 52.381 0.00 0.00 0.00 4.35
4356 12739 1.401199 GGACAGGCTACAGAGTACGTC 59.599 57.143 0.00 0.00 0.00 4.34
4357 12740 1.271762 TGGACAGGCTACAGAGTACGT 60.272 52.381 0.00 0.00 0.00 3.57
4358 12741 1.132643 GTGGACAGGCTACAGAGTACG 59.867 57.143 0.00 0.00 0.00 3.67
4359 12742 1.132643 CGTGGACAGGCTACAGAGTAC 59.867 57.143 0.00 0.00 0.00 2.73
4360 12743 1.460504 CGTGGACAGGCTACAGAGTA 58.539 55.000 0.00 0.00 0.00 2.59
4361 12744 1.878656 GCGTGGACAGGCTACAGAGT 61.879 60.000 9.51 0.00 38.98 3.24
4362 12745 1.153745 GCGTGGACAGGCTACAGAG 60.154 63.158 9.51 0.00 38.98 3.35
4363 12746 1.877576 CTGCGTGGACAGGCTACAGA 61.878 60.000 16.59 0.00 42.21 3.41
4364 12747 1.446792 CTGCGTGGACAGGCTACAG 60.447 63.158 16.59 3.97 42.21 2.74
4365 12748 2.207229 ACTGCGTGGACAGGCTACA 61.207 57.895 16.59 0.00 42.21 2.74
4366 12749 1.738099 CACTGCGTGGACAGGCTAC 60.738 63.158 16.59 0.00 42.21 3.58
4367 12750 2.154798 GACACTGCGTGGACAGGCTA 62.155 60.000 16.59 4.33 42.21 3.93
4368 12751 3.521529 GACACTGCGTGGACAGGCT 62.522 63.158 16.59 0.00 42.21 4.58
4369 12752 3.044305 GACACTGCGTGGACAGGC 61.044 66.667 9.82 9.82 42.21 4.85
4370 12753 1.373497 GAGACACTGCGTGGACAGG 60.373 63.158 12.18 0.00 42.21 4.00
4371 12754 1.373497 GGAGACACTGCGTGGACAG 60.373 63.158 12.18 0.00 43.59 3.51
4372 12755 2.734591 GGAGACACTGCGTGGACA 59.265 61.111 12.18 0.00 37.94 4.02
4373 12756 2.048127 GGGAGACACTGCGTGGAC 60.048 66.667 12.18 6.77 37.94 4.02
4374 12757 3.680786 CGGGAGACACTGCGTGGA 61.681 66.667 12.18 0.00 37.94 4.02
4375 12758 4.742201 CCGGGAGACACTGCGTGG 62.742 72.222 12.18 0.00 37.94 4.94
4376 12759 4.742201 CCCGGGAGACACTGCGTG 62.742 72.222 18.48 7.07 39.75 5.34
4377 12760 4.988716 TCCCGGGAGACACTGCGT 62.989 66.667 22.63 0.00 0.00 5.24
4378 12761 4.135153 CTCCCGGGAGACACTGCG 62.135 72.222 42.70 16.46 44.53 5.18
4393 12776 4.796231 ATCGTGGGCGCGTGACTC 62.796 66.667 8.43 0.00 38.14 3.36
4394 12777 4.796231 GATCGTGGGCGCGTGACT 62.796 66.667 8.43 0.00 38.14 3.41
4402 12785 3.499737 CTGGTTGCGATCGTGGGC 61.500 66.667 17.81 0.00 0.00 5.36
4403 12786 3.499737 GCTGGTTGCGATCGTGGG 61.500 66.667 17.81 2.99 0.00 4.61
4412 12795 2.098298 CGTATGTGCGCTGGTTGC 59.902 61.111 9.73 0.00 38.57 4.17
4421 12804 2.440501 CAAAGGAAATCGCGTATGTGC 58.559 47.619 5.77 0.00 0.00 4.57
4422 12805 2.095853 AGCAAAGGAAATCGCGTATGTG 59.904 45.455 5.77 0.00 0.00 3.21
4423 12806 2.356135 AGCAAAGGAAATCGCGTATGT 58.644 42.857 5.77 0.00 0.00 2.29
4424 12807 3.405170 AAGCAAAGGAAATCGCGTATG 57.595 42.857 5.77 0.00 0.00 2.39
4425 12808 4.434713 AAAAGCAAAGGAAATCGCGTAT 57.565 36.364 5.77 0.00 0.00 3.06
4426 12809 3.907894 AAAAGCAAAGGAAATCGCGTA 57.092 38.095 5.77 0.00 0.00 4.42
4427 12810 2.793278 AAAAGCAAAGGAAATCGCGT 57.207 40.000 5.77 0.00 0.00 6.01
4452 12835 4.212911 CAACGGAAAGCGAACGATAAAAA 58.787 39.130 0.00 0.00 0.00 1.94
4453 12836 3.801293 CAACGGAAAGCGAACGATAAAA 58.199 40.909 0.00 0.00 0.00 1.52
4454 12837 2.411806 GCAACGGAAAGCGAACGATAAA 60.412 45.455 0.00 0.00 0.00 1.40
4455 12838 1.127213 GCAACGGAAAGCGAACGATAA 59.873 47.619 0.00 0.00 0.00 1.75
4456 12839 0.717224 GCAACGGAAAGCGAACGATA 59.283 50.000 0.00 0.00 0.00 2.92
4457 12840 0.949105 AGCAACGGAAAGCGAACGAT 60.949 50.000 0.00 0.00 35.48 3.73
4458 12841 1.593209 AGCAACGGAAAGCGAACGA 60.593 52.632 0.00 0.00 35.48 3.85
4459 12842 1.438710 CAGCAACGGAAAGCGAACG 60.439 57.895 0.00 0.00 35.48 3.95
4460 12843 1.725973 GCAGCAACGGAAAGCGAAC 60.726 57.895 0.00 0.00 35.48 3.95
4461 12844 2.116736 CTGCAGCAACGGAAAGCGAA 62.117 55.000 0.00 0.00 35.48 4.70
4462 12845 2.590291 TGCAGCAACGGAAAGCGA 60.590 55.556 0.00 0.00 35.48 4.93
4463 12846 2.127118 CTGCAGCAACGGAAAGCG 60.127 61.111 0.00 0.00 35.48 4.68
4464 12847 2.429739 GCTGCAGCAACGGAAAGC 60.430 61.111 33.36 2.16 41.59 3.51
4474 12857 2.662857 TGTGAGACGTGCTGCAGC 60.663 61.111 31.89 31.89 42.50 5.25
4475 12858 0.947660 ATGTGTGAGACGTGCTGCAG 60.948 55.000 10.11 10.11 0.00 4.41
4476 12859 0.316841 TATGTGTGAGACGTGCTGCA 59.683 50.000 0.00 0.00 0.00 4.41
4477 12860 1.126846 GTTATGTGTGAGACGTGCTGC 59.873 52.381 0.00 0.00 0.00 5.25
4478 12861 1.386748 CGTTATGTGTGAGACGTGCTG 59.613 52.381 0.00 0.00 0.00 4.41
4479 12862 1.000607 ACGTTATGTGTGAGACGTGCT 60.001 47.619 0.00 0.00 45.75 4.40
4480 12863 1.415374 ACGTTATGTGTGAGACGTGC 58.585 50.000 0.00 0.00 45.75 5.34
4491 12874 1.669760 CCCACCACGCACGTTATGT 60.670 57.895 0.00 0.00 0.00 2.29
4492 12875 3.034370 GCCCACCACGCACGTTATG 62.034 63.158 0.00 0.00 0.00 1.90
4493 12876 2.744709 GCCCACCACGCACGTTAT 60.745 61.111 0.00 0.00 0.00 1.89
4494 12877 4.992511 GGCCCACCACGCACGTTA 62.993 66.667 0.00 0.00 35.26 3.18
4498 12881 3.622060 ATGTAGGCCCACCACGCAC 62.622 63.158 0.00 0.00 39.06 5.34
4499 12882 3.326578 ATGTAGGCCCACCACGCA 61.327 61.111 0.00 0.00 39.06 5.24
4500 12883 2.824041 CATGTAGGCCCACCACGC 60.824 66.667 0.00 0.00 39.06 5.34
4501 12884 2.124736 CCATGTAGGCCCACCACG 60.125 66.667 0.00 0.00 39.06 4.94
4510 12893 1.048601 ATGGACTACGGCCATGTAGG 58.951 55.000 18.60 0.00 44.21 3.18
4515 12898 0.464373 CTTGCATGGACTACGGCCAT 60.464 55.000 2.24 0.00 46.76 4.40
4516 12899 1.078497 CTTGCATGGACTACGGCCA 60.078 57.895 2.24 0.00 40.24 5.36
4517 12900 1.819632 CCTTGCATGGACTACGGCC 60.820 63.158 13.33 0.00 0.00 6.13
4518 12901 0.179045 ATCCTTGCATGGACTACGGC 60.179 55.000 22.61 0.00 39.17 5.68
4519 12902 1.586422 CATCCTTGCATGGACTACGG 58.414 55.000 22.61 7.42 39.17 4.02
4520 12903 1.138859 TCCATCCTTGCATGGACTACG 59.861 52.381 22.61 11.67 46.34 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.