Multiple sequence alignment - TraesCS6D01G027300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G027300 chr6D 100.000 4492 0 0 1 4492 10374328 10369837 0.000000e+00 8296.0
1 TraesCS6D01G027300 chr6D 93.319 3697 160 35 287 3928 10346596 10342932 0.000000e+00 5378.0
2 TraesCS6D01G027300 chr6D 93.068 3044 161 20 921 3928 10337943 10334914 0.000000e+00 4407.0
3 TraesCS6D01G027300 chr6D 100.000 50 0 0 3923 3972 45508267 45508218 4.780000e-15 93.5
4 TraesCS6D01G027300 chr6A 95.781 3840 118 12 1 3807 11887429 11883601 0.000000e+00 6154.0
5 TraesCS6D01G027300 chr6A 93.562 2889 161 6 921 3785 11841890 11839003 0.000000e+00 4281.0
6 TraesCS6D01G027300 chr6A 92.950 2383 121 24 287 2658 11855172 11852826 0.000000e+00 3426.0
7 TraesCS6D01G027300 chr6A 88.723 1410 87 18 2571 3928 11852819 11851430 0.000000e+00 1657.0
8 TraesCS6D01G027300 chr6A 98.485 66 1 0 3863 3928 11883572 11883507 2.840000e-22 117.0
9 TraesCS6D01G027300 chr6B 92.586 3399 206 18 424 3785 18945105 18941716 0.000000e+00 4839.0
10 TraesCS6D01G027300 chr6B 92.991 3139 183 13 675 3785 19118838 19121967 0.000000e+00 4543.0
11 TraesCS6D01G027300 chr6B 84.242 165 15 1 3775 3928 19122005 19122169 2.800000e-32 150.0
12 TraesCS6D01G027300 chr7D 81.268 347 52 8 4150 4492 175671806 175671469 7.410000e-68 268.0
13 TraesCS6D01G027300 chr5B 73.631 493 101 19 1924 2394 537535669 537535184 3.600000e-36 163.0
14 TraesCS6D01G027300 chr5A 76.087 230 46 4 1921 2143 706322247 706322474 1.320000e-20 111.0
15 TraesCS6D01G027300 chr5D 100.000 50 0 0 3923 3972 28033689 28033738 4.780000e-15 93.5
16 TraesCS6D01G027300 chr5D 100.000 50 0 0 3923 3972 28034139 28034188 4.780000e-15 93.5
17 TraesCS6D01G027300 chr5D 100.000 50 0 0 3923 3972 503290611 503290660 4.780000e-15 93.5
18 TraesCS6D01G027300 chr4B 100.000 50 0 0 3923 3972 308680515 308680466 4.780000e-15 93.5
19 TraesCS6D01G027300 chr3D 100.000 50 0 0 3923 3972 604112848 604112897 4.780000e-15 93.5
20 TraesCS6D01G027300 chr3D 100.000 50 0 0 3923 3972 604113076 604113125 4.780000e-15 93.5
21 TraesCS6D01G027300 chr1D 100.000 50 0 0 3923 3972 254434285 254434334 4.780000e-15 93.5
22 TraesCS6D01G027300 chr1A 100.000 50 0 0 3923 3972 554462314 554462363 4.780000e-15 93.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G027300 chr6D 10369837 10374328 4491 True 8296.0 8296 100.0000 1 4492 1 chr6D.!!$R3 4491
1 TraesCS6D01G027300 chr6D 10342932 10346596 3664 True 5378.0 5378 93.3190 287 3928 1 chr6D.!!$R2 3641
2 TraesCS6D01G027300 chr6D 10334914 10337943 3029 True 4407.0 4407 93.0680 921 3928 1 chr6D.!!$R1 3007
3 TraesCS6D01G027300 chr6A 11839003 11841890 2887 True 4281.0 4281 93.5620 921 3785 1 chr6A.!!$R1 2864
4 TraesCS6D01G027300 chr6A 11883507 11887429 3922 True 3135.5 6154 97.1330 1 3928 2 chr6A.!!$R3 3927
5 TraesCS6D01G027300 chr6A 11851430 11855172 3742 True 2541.5 3426 90.8365 287 3928 2 chr6A.!!$R2 3641
6 TraesCS6D01G027300 chr6B 18941716 18945105 3389 True 4839.0 4839 92.5860 424 3785 1 chr6B.!!$R1 3361
7 TraesCS6D01G027300 chr6B 19118838 19122169 3331 False 2346.5 4543 88.6165 675 3928 2 chr6B.!!$F1 3253

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
395 404 2.346766 TACCTACCTGCCATGCAATG 57.653 50.0 0.0 0.0 46.21 2.82 F
1013 1047 0.178978 TGGCCCATAGTTGTTGCACA 60.179 50.0 0.0 0.0 0.00 4.57 F
1014 1048 0.243636 GGCCCATAGTTGTTGCACAC 59.756 55.0 0.0 0.0 0.00 3.82 F
1490 1526 0.244721 CTCACTGCTGTCATCCGTCA 59.755 55.0 0.0 0.0 0.00 4.35 F
2348 2384 0.251916 CCTCCCGTATTTCCTGCACA 59.748 55.0 0.0 0.0 0.00 4.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2348 2384 2.632537 ACCTTGTAGGATCACCCTTGT 58.367 47.619 0.00 0.00 44.85 3.16 R
2662 2775 7.369803 ACATCTCAATTGTTGCTTACTAGTG 57.630 36.000 5.39 0.00 0.00 2.74 R
2960 3074 7.657336 TGTATCCTTTCTCGCAAAAAGAAAAT 58.343 30.769 4.51 0.00 41.02 1.82 R
3431 3548 0.945813 GATCTTCAGCCTGAGCATGC 59.054 55.000 10.51 10.51 43.56 4.06 R
3979 4186 0.036483 TGCGGCTTGAATGCTGAGTA 60.036 50.000 0.00 0.00 41.56 2.59 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
123 132 4.735985 TCAATGACATCAAAAATCAGCCG 58.264 39.130 0.00 0.00 0.00 5.52
143 152 2.664436 GGGAAACGTGACCGAAGCG 61.664 63.158 0.00 0.00 37.88 4.68
223 232 6.817641 CAGAATTCAGCTCATCTGTTCTAACT 59.182 38.462 8.44 0.00 43.32 2.24
239 248 6.314400 TGTTCTAACTGACGGTATTTATTGGC 59.686 38.462 0.00 0.00 0.00 4.52
269 278 4.292306 AGAAATGTACTTCACCCAAGGGAT 59.708 41.667 13.15 0.00 36.26 3.85
295 304 6.512297 TCTTGCTTGTTAAAATGGACTTTCC 58.488 36.000 0.00 0.00 36.96 3.13
395 404 2.346766 TACCTACCTGCCATGCAATG 57.653 50.000 0.00 0.00 46.21 2.82
621 640 6.897706 ATAGACTTTCTAATCGGGGACTAC 57.102 41.667 0.00 0.00 31.96 2.73
814 836 2.360553 TTGCAAATTGTACATGGCCG 57.639 45.000 0.00 0.00 0.00 6.13
1001 1028 0.614697 GGTAAAAGCAGGTGGCCCAT 60.615 55.000 0.00 0.00 46.50 4.00
1011 1045 0.897863 GGTGGCCCATAGTTGTTGCA 60.898 55.000 0.00 0.00 0.00 4.08
1012 1046 0.243636 GTGGCCCATAGTTGTTGCAC 59.756 55.000 0.00 0.00 0.00 4.57
1013 1047 0.178978 TGGCCCATAGTTGTTGCACA 60.179 50.000 0.00 0.00 0.00 4.57
1014 1048 0.243636 GGCCCATAGTTGTTGCACAC 59.756 55.000 0.00 0.00 0.00 3.82
1015 1049 1.247567 GCCCATAGTTGTTGCACACT 58.752 50.000 0.00 0.00 0.00 3.55
1016 1050 2.432444 GCCCATAGTTGTTGCACACTA 58.568 47.619 2.81 2.81 0.00 2.74
1017 1051 2.161609 GCCCATAGTTGTTGCACACTAC 59.838 50.000 2.43 4.29 0.00 2.73
1020 1054 3.367932 CCATAGTTGTTGCACACTACGAG 59.632 47.826 2.43 0.00 36.35 4.18
1141 1176 4.853924 AAAGGATGAGTGTCGCAATTTT 57.146 36.364 0.00 0.00 0.00 1.82
1490 1526 0.244721 CTCACTGCTGTCATCCGTCA 59.755 55.000 0.00 0.00 0.00 4.35
1495 1531 2.447887 GCTGTCATCCGTCACGCAG 61.448 63.158 0.00 0.00 0.00 5.18
1618 1654 0.374063 CACGTTTGCGGTACACAACA 59.626 50.000 0.00 0.00 43.45 3.33
2100 2136 3.330998 TCCACAATGGGTACACATGGTTA 59.669 43.478 15.86 4.42 38.32 2.85
2155 2191 7.443879 TGTTTGCTGATTTTAGTGTGTCAGATA 59.556 33.333 5.49 0.00 40.30 1.98
2348 2384 0.251916 CCTCCCGTATTTCCTGCACA 59.748 55.000 0.00 0.00 0.00 4.57
2662 2775 1.064979 TCCTCGGGCCATTTTAGGAAC 60.065 52.381 4.39 0.00 33.45 3.62
2835 2948 6.048732 TGGAAGTTCATGTAGTGCATCTTA 57.951 37.500 5.01 0.00 35.19 2.10
3041 3155 6.373779 CCTATTTAAGCATGCCGTTATTCAG 58.626 40.000 15.66 2.57 0.00 3.02
3051 3167 3.704566 TGCCGTTATTCAGACACCTATCT 59.295 43.478 0.00 0.00 0.00 1.98
3104 3220 6.147000 ACACTTGTGTTGTTGAATGTTTTTCC 59.853 34.615 0.00 0.00 0.00 3.13
3199 3315 4.455877 GGTGACTTTTACCCTCATTGACTG 59.544 45.833 0.00 0.00 31.89 3.51
3219 3336 7.877003 TGACTGTTGTTTCTTTACTTTTCACA 58.123 30.769 0.00 0.00 0.00 3.58
3221 3338 7.653647 ACTGTTGTTTCTTTACTTTTCACACA 58.346 30.769 0.00 0.00 0.00 3.72
3363 3480 6.048509 ACTTGCCTTGTAAATTTTTCTGGTG 58.951 36.000 0.00 0.00 0.00 4.17
3431 3548 7.441017 TCCTATTTTGTTTGGAACAGAAATGG 58.559 34.615 15.77 13.02 43.27 3.16
3572 3690 4.005650 GTGATGGATGACATGTGACAACT 58.994 43.478 1.15 0.00 40.72 3.16
3593 3711 3.071874 TGGAAAGTTATGAGCACCTGG 57.928 47.619 0.00 0.00 0.00 4.45
3594 3712 2.642311 TGGAAAGTTATGAGCACCTGGA 59.358 45.455 0.00 0.00 0.00 3.86
3595 3713 3.073798 TGGAAAGTTATGAGCACCTGGAA 59.926 43.478 0.00 0.00 0.00 3.53
3596 3714 4.079253 GGAAAGTTATGAGCACCTGGAAA 58.921 43.478 0.00 0.00 0.00 3.13
3680 3827 6.218019 TCTTTTGCATGATTTTCTTCACCTG 58.782 36.000 0.00 0.00 0.00 4.00
3746 3893 4.357018 TGCTGTCTACTCTGTTGTATCG 57.643 45.455 0.00 0.00 0.00 2.92
3753 3900 5.125097 GTCTACTCTGTTGTATCGGGAAAGA 59.875 44.000 0.00 0.00 0.00 2.52
3824 4020 1.603326 CTGTTGTTTGCCCCAAATTGC 59.397 47.619 0.00 0.00 35.74 3.56
3828 4024 1.202627 TGTTTGCCCCAAATTGCTGTC 60.203 47.619 0.00 0.00 35.74 3.51
3837 4033 2.181975 CAAATTGCTGTCTCCCCCAAT 58.818 47.619 0.00 0.00 0.00 3.16
3923 4130 0.464554 GAGCCCACCAATCTACTGCC 60.465 60.000 0.00 0.00 0.00 4.85
3928 4135 2.689983 CCCACCAATCTACTGCCATTTC 59.310 50.000 0.00 0.00 0.00 2.17
3929 4136 2.355756 CCACCAATCTACTGCCATTTCG 59.644 50.000 0.00 0.00 0.00 3.46
3930 4137 3.009723 CACCAATCTACTGCCATTTCGT 58.990 45.455 0.00 0.00 0.00 3.85
3931 4138 4.188462 CACCAATCTACTGCCATTTCGTA 58.812 43.478 0.00 0.00 0.00 3.43
3932 4139 4.034048 CACCAATCTACTGCCATTTCGTAC 59.966 45.833 0.00 0.00 0.00 3.67
3933 4140 3.560068 CCAATCTACTGCCATTTCGTACC 59.440 47.826 0.00 0.00 0.00 3.34
3934 4141 4.188462 CAATCTACTGCCATTTCGTACCA 58.812 43.478 0.00 0.00 0.00 3.25
3935 4142 3.520290 TCTACTGCCATTTCGTACCAG 57.480 47.619 0.00 0.00 0.00 4.00
3936 4143 3.093814 TCTACTGCCATTTCGTACCAGA 58.906 45.455 0.81 0.00 0.00 3.86
3937 4144 2.851263 ACTGCCATTTCGTACCAGAA 57.149 45.000 0.81 0.00 0.00 3.02
3938 4145 3.134574 ACTGCCATTTCGTACCAGAAA 57.865 42.857 0.81 0.10 43.28 2.52
3939 4146 3.482436 ACTGCCATTTCGTACCAGAAAA 58.518 40.909 0.87 0.00 42.52 2.29
3940 4147 3.502211 ACTGCCATTTCGTACCAGAAAAG 59.498 43.478 0.87 0.00 42.52 2.27
3941 4148 2.227865 TGCCATTTCGTACCAGAAAAGC 59.772 45.455 11.41 11.41 42.52 3.51
3942 4149 2.415491 GCCATTTCGTACCAGAAAAGCC 60.415 50.000 0.87 0.00 42.52 4.35
3943 4150 2.163613 CCATTTCGTACCAGAAAAGCCC 59.836 50.000 0.87 0.00 42.52 5.19
3944 4151 2.642154 TTTCGTACCAGAAAAGCCCA 57.358 45.000 0.00 0.00 37.20 5.36
3945 4152 2.871096 TTCGTACCAGAAAAGCCCAT 57.129 45.000 0.00 0.00 0.00 4.00
3946 4153 2.107950 TCGTACCAGAAAAGCCCATG 57.892 50.000 0.00 0.00 0.00 3.66
3947 4154 1.349688 TCGTACCAGAAAAGCCCATGT 59.650 47.619 0.00 0.00 0.00 3.21
3948 4155 2.568062 TCGTACCAGAAAAGCCCATGTA 59.432 45.455 0.00 0.00 0.00 2.29
3949 4156 3.199071 TCGTACCAGAAAAGCCCATGTAT 59.801 43.478 0.00 0.00 0.00 2.29
3950 4157 3.312421 CGTACCAGAAAAGCCCATGTATG 59.688 47.826 0.00 0.00 0.00 2.39
3951 4158 3.737559 ACCAGAAAAGCCCATGTATGA 57.262 42.857 0.00 0.00 0.00 2.15
3952 4159 4.046286 ACCAGAAAAGCCCATGTATGAA 57.954 40.909 0.00 0.00 0.00 2.57
3953 4160 3.763897 ACCAGAAAAGCCCATGTATGAAC 59.236 43.478 0.00 0.00 0.00 3.18
3954 4161 3.763360 CCAGAAAAGCCCATGTATGAACA 59.237 43.478 0.00 0.00 40.69 3.18
3955 4162 4.220382 CCAGAAAAGCCCATGTATGAACAA 59.780 41.667 0.00 0.00 39.58 2.83
3956 4163 5.404946 CAGAAAAGCCCATGTATGAACAAG 58.595 41.667 0.00 0.00 39.58 3.16
3957 4164 4.463891 AGAAAAGCCCATGTATGAACAAGG 59.536 41.667 0.00 0.00 42.87 3.61
3964 4171 5.920193 CCATGTATGAACAAGGGTTGATT 57.080 39.130 0.00 0.00 40.16 2.57
3965 4172 6.284891 CCATGTATGAACAAGGGTTGATTT 57.715 37.500 0.00 0.00 40.16 2.17
3966 4173 6.700352 CCATGTATGAACAAGGGTTGATTTT 58.300 36.000 0.00 0.00 40.16 1.82
3967 4174 7.835822 CCATGTATGAACAAGGGTTGATTTTA 58.164 34.615 0.00 0.00 40.16 1.52
3968 4175 7.759433 CCATGTATGAACAAGGGTTGATTTTAC 59.241 37.037 0.00 0.00 40.16 2.01
3969 4176 8.522830 CATGTATGAACAAGGGTTGATTTTACT 58.477 33.333 0.00 0.00 39.58 2.24
3970 4177 8.472007 TGTATGAACAAGGGTTGATTTTACTT 57.528 30.769 0.00 0.00 37.36 2.24
3971 4178 8.573035 TGTATGAACAAGGGTTGATTTTACTTC 58.427 33.333 0.00 0.00 37.36 3.01
3972 4179 7.595819 ATGAACAAGGGTTGATTTTACTTCA 57.404 32.000 0.00 0.00 37.36 3.02
3973 4180 6.801575 TGAACAAGGGTTGATTTTACTTCAC 58.198 36.000 0.00 0.00 37.36 3.18
3974 4181 5.432885 ACAAGGGTTGATTTTACTTCACG 57.567 39.130 0.00 0.00 0.00 4.35
3975 4182 4.277423 ACAAGGGTTGATTTTACTTCACGG 59.723 41.667 0.00 0.00 0.00 4.94
3976 4183 3.418047 AGGGTTGATTTTACTTCACGGG 58.582 45.455 0.00 0.00 0.00 5.28
3977 4184 2.490509 GGGTTGATTTTACTTCACGGGG 59.509 50.000 0.00 0.00 0.00 5.73
3978 4185 2.094906 GGTTGATTTTACTTCACGGGGC 60.095 50.000 0.00 0.00 0.00 5.80
3979 4186 2.817844 GTTGATTTTACTTCACGGGGCT 59.182 45.455 0.00 0.00 0.00 5.19
3980 4187 3.985019 TGATTTTACTTCACGGGGCTA 57.015 42.857 0.00 0.00 0.00 3.93
3981 4188 3.602483 TGATTTTACTTCACGGGGCTAC 58.398 45.455 0.00 0.00 0.00 3.58
3982 4189 3.262405 TGATTTTACTTCACGGGGCTACT 59.738 43.478 0.00 0.00 0.00 2.57
3983 4190 3.323751 TTTTACTTCACGGGGCTACTC 57.676 47.619 0.00 0.00 0.00 2.59
3984 4191 1.927487 TTACTTCACGGGGCTACTCA 58.073 50.000 0.00 0.00 0.00 3.41
3985 4192 1.471119 TACTTCACGGGGCTACTCAG 58.529 55.000 0.00 0.00 0.00 3.35
3997 4204 0.654683 CTACTCAGCATTCAAGCCGC 59.345 55.000 0.00 0.00 34.23 6.53
3998 4205 0.036483 TACTCAGCATTCAAGCCGCA 60.036 50.000 0.00 0.00 34.23 5.69
3999 4206 0.890542 ACTCAGCATTCAAGCCGCAA 60.891 50.000 0.00 0.00 34.23 4.85
4000 4207 0.455633 CTCAGCATTCAAGCCGCAAC 60.456 55.000 0.00 0.00 34.23 4.17
4001 4208 0.890542 TCAGCATTCAAGCCGCAACT 60.891 50.000 0.00 0.00 34.23 3.16
4002 4209 0.731514 CAGCATTCAAGCCGCAACTG 60.732 55.000 0.00 0.00 34.23 3.16
4003 4210 2.090524 GCATTCAAGCCGCAACTGC 61.091 57.895 0.00 0.00 37.78 4.40
4004 4211 1.582968 CATTCAAGCCGCAACTGCT 59.417 52.632 0.00 0.00 41.89 4.24
4005 4212 0.455633 CATTCAAGCCGCAACTGCTC 60.456 55.000 0.00 0.00 38.34 4.26
4006 4213 0.607489 ATTCAAGCCGCAACTGCTCT 60.607 50.000 0.00 0.00 38.34 4.09
4007 4214 1.230635 TTCAAGCCGCAACTGCTCTC 61.231 55.000 0.00 0.00 38.34 3.20
4008 4215 2.740055 AAGCCGCAACTGCTCTCG 60.740 61.111 0.00 0.00 38.34 4.04
4009 4216 4.749310 AGCCGCAACTGCTCTCGG 62.749 66.667 0.00 0.00 44.29 4.63
4011 4218 3.114616 CCGCAACTGCTCTCGGTG 61.115 66.667 0.00 0.00 39.32 4.94
4012 4219 3.114616 CGCAACTGCTCTCGGTGG 61.115 66.667 0.00 0.00 39.32 4.61
4013 4220 3.426568 GCAACTGCTCTCGGTGGC 61.427 66.667 0.00 0.00 40.99 5.01
4014 4221 2.345244 CAACTGCTCTCGGTGGCT 59.655 61.111 0.00 0.00 0.00 4.75
4015 4222 2.031516 CAACTGCTCTCGGTGGCTG 61.032 63.158 0.00 0.00 0.00 4.85
4016 4223 2.511452 AACTGCTCTCGGTGGCTGT 61.511 57.895 0.00 0.00 41.13 4.40
4017 4224 2.125753 CTGCTCTCGGTGGCTGTC 60.126 66.667 0.00 0.00 0.00 3.51
4018 4225 2.917227 TGCTCTCGGTGGCTGTCA 60.917 61.111 0.00 0.00 0.00 3.58
4019 4226 2.343758 GCTCTCGGTGGCTGTCAA 59.656 61.111 0.00 0.00 0.00 3.18
4020 4227 1.739562 GCTCTCGGTGGCTGTCAAG 60.740 63.158 0.00 0.00 0.00 3.02
4032 4239 2.806608 CTGTCAAGCACCTGCAAAAT 57.193 45.000 0.00 0.00 45.16 1.82
4033 4240 3.102052 CTGTCAAGCACCTGCAAAATT 57.898 42.857 0.00 0.00 45.16 1.82
4034 4241 3.054878 CTGTCAAGCACCTGCAAAATTC 58.945 45.455 0.00 0.00 45.16 2.17
4035 4242 2.694628 TGTCAAGCACCTGCAAAATTCT 59.305 40.909 0.00 0.00 45.16 2.40
4036 4243 3.243501 TGTCAAGCACCTGCAAAATTCTC 60.244 43.478 0.00 0.00 45.16 2.87
4037 4244 2.957680 TCAAGCACCTGCAAAATTCTCA 59.042 40.909 0.00 0.00 45.16 3.27
4038 4245 3.384146 TCAAGCACCTGCAAAATTCTCAA 59.616 39.130 0.00 0.00 45.16 3.02
4039 4246 4.039488 TCAAGCACCTGCAAAATTCTCAAT 59.961 37.500 0.00 0.00 45.16 2.57
4040 4247 3.921677 AGCACCTGCAAAATTCTCAATG 58.078 40.909 0.00 0.00 45.16 2.82
4041 4248 2.414138 GCACCTGCAAAATTCTCAATGC 59.586 45.455 0.00 0.00 41.59 3.56
4042 4249 2.997986 CACCTGCAAAATTCTCAATGCC 59.002 45.455 0.00 0.00 38.00 4.40
4043 4250 2.901839 ACCTGCAAAATTCTCAATGCCT 59.098 40.909 0.00 0.00 38.00 4.75
4044 4251 3.259064 CCTGCAAAATTCTCAATGCCTG 58.741 45.455 0.00 0.00 38.00 4.85
4045 4252 2.671396 CTGCAAAATTCTCAATGCCTGC 59.329 45.455 0.00 0.00 38.00 4.85
4046 4253 2.300723 TGCAAAATTCTCAATGCCTGCT 59.699 40.909 0.00 0.00 38.00 4.24
4047 4254 3.244284 TGCAAAATTCTCAATGCCTGCTT 60.244 39.130 0.00 0.00 38.00 3.91
4048 4255 3.370061 GCAAAATTCTCAATGCCTGCTTC 59.630 43.478 0.00 0.00 32.73 3.86
4049 4256 4.817517 CAAAATTCTCAATGCCTGCTTCT 58.182 39.130 0.00 0.00 0.00 2.85
4050 4257 5.235516 CAAAATTCTCAATGCCTGCTTCTT 58.764 37.500 0.00 0.00 0.00 2.52
4051 4258 4.715527 AATTCTCAATGCCTGCTTCTTC 57.284 40.909 0.00 0.00 0.00 2.87
4052 4259 2.119801 TCTCAATGCCTGCTTCTTCC 57.880 50.000 0.00 0.00 0.00 3.46
4053 4260 1.352017 TCTCAATGCCTGCTTCTTCCA 59.648 47.619 0.00 0.00 0.00 3.53
4054 4261 2.025605 TCTCAATGCCTGCTTCTTCCAT 60.026 45.455 0.00 0.00 0.00 3.41
4055 4262 2.097036 TCAATGCCTGCTTCTTCCATG 58.903 47.619 0.00 0.00 0.00 3.66
4056 4263 2.097036 CAATGCCTGCTTCTTCCATGA 58.903 47.619 0.00 0.00 0.00 3.07
4057 4264 2.494471 CAATGCCTGCTTCTTCCATGAA 59.506 45.455 0.00 0.00 0.00 2.57
4058 4265 2.291209 TGCCTGCTTCTTCCATGAAA 57.709 45.000 0.00 0.00 0.00 2.69
4059 4266 1.888512 TGCCTGCTTCTTCCATGAAAC 59.111 47.619 0.00 0.00 0.00 2.78
4060 4267 1.888512 GCCTGCTTCTTCCATGAAACA 59.111 47.619 0.00 0.00 0.00 2.83
4061 4268 2.494870 GCCTGCTTCTTCCATGAAACAT 59.505 45.455 0.00 0.00 0.00 2.71
4062 4269 3.675228 GCCTGCTTCTTCCATGAAACATG 60.675 47.826 0.00 4.94 0.00 3.21
4063 4270 3.119245 CCTGCTTCTTCCATGAAACATGG 60.119 47.826 20.62 20.62 40.48 3.66
4064 4271 2.231964 TGCTTCTTCCATGAAACATGGC 59.768 45.455 21.51 11.79 39.01 4.40
4065 4272 2.733227 GCTTCTTCCATGAAACATGGCG 60.733 50.000 21.51 15.75 39.01 5.69
4066 4273 2.198827 TCTTCCATGAAACATGGCGT 57.801 45.000 21.51 0.00 39.01 5.68
4067 4274 2.513753 TCTTCCATGAAACATGGCGTT 58.486 42.857 21.51 0.00 40.50 4.84
4068 4275 2.487762 TCTTCCATGAAACATGGCGTTC 59.512 45.455 21.51 0.00 36.59 3.95
4069 4276 1.173043 TCCATGAAACATGGCGTTCC 58.827 50.000 21.51 0.00 36.59 3.62
4083 4290 4.839121 TGGCGTTCCATACAATTAAGTCT 58.161 39.130 0.00 0.00 37.47 3.24
4084 4291 5.979993 TGGCGTTCCATACAATTAAGTCTA 58.020 37.500 0.00 0.00 37.47 2.59
4085 4292 6.408035 TGGCGTTCCATACAATTAAGTCTAA 58.592 36.000 0.00 0.00 37.47 2.10
4086 4293 6.879993 TGGCGTTCCATACAATTAAGTCTAAA 59.120 34.615 0.00 0.00 37.47 1.85
4087 4294 7.065324 TGGCGTTCCATACAATTAAGTCTAAAG 59.935 37.037 0.00 0.00 37.47 1.85
4088 4295 7.279313 GGCGTTCCATACAATTAAGTCTAAAGA 59.721 37.037 0.00 0.00 0.00 2.52
4089 4296 8.827677 GCGTTCCATACAATTAAGTCTAAAGAT 58.172 33.333 0.00 0.00 0.00 2.40
4102 4309 9.607988 TTAAGTCTAAAGATGTTGAGAAACACA 57.392 29.630 0.00 0.00 35.22 3.72
4103 4310 8.682936 AAGTCTAAAGATGTTGAGAAACACAT 57.317 30.769 0.00 0.00 35.22 3.21
4104 4311 8.092521 AGTCTAAAGATGTTGAGAAACACATG 57.907 34.615 0.00 0.00 35.22 3.21
4105 4312 7.173907 AGTCTAAAGATGTTGAGAAACACATGG 59.826 37.037 0.00 0.00 35.22 3.66
4106 4313 6.998074 TCTAAAGATGTTGAGAAACACATGGT 59.002 34.615 0.00 0.00 35.22 3.55
4107 4314 5.695851 AAGATGTTGAGAAACACATGGTC 57.304 39.130 0.00 0.00 35.22 4.02
4108 4315 4.074970 AGATGTTGAGAAACACATGGTCC 58.925 43.478 0.00 0.00 35.22 4.46
4109 4316 3.576078 TGTTGAGAAACACATGGTCCT 57.424 42.857 0.00 0.00 0.00 3.85
4110 4317 3.213506 TGTTGAGAAACACATGGTCCTG 58.786 45.455 0.00 0.00 0.00 3.86
4111 4318 2.554032 GTTGAGAAACACATGGTCCTGG 59.446 50.000 0.00 0.00 0.00 4.45
4112 4319 1.073763 TGAGAAACACATGGTCCTGGG 59.926 52.381 0.00 0.00 0.00 4.45
4113 4320 0.405585 AGAAACACATGGTCCTGGGG 59.594 55.000 0.00 0.00 0.00 4.96
4114 4321 1.228862 AAACACATGGTCCTGGGGC 60.229 57.895 0.00 0.00 0.00 5.80
4115 4322 2.017668 AAACACATGGTCCTGGGGCA 62.018 55.000 0.00 0.00 0.00 5.36
4116 4323 2.044650 CACATGGTCCTGGGGCAG 60.045 66.667 0.00 0.00 0.00 4.85
4117 4324 4.052518 ACATGGTCCTGGGGCAGC 62.053 66.667 0.00 0.00 0.00 5.25
4118 4325 3.736224 CATGGTCCTGGGGCAGCT 61.736 66.667 0.00 0.00 0.00 4.24
4119 4326 2.042762 ATGGTCCTGGGGCAGCTA 59.957 61.111 0.00 0.00 0.00 3.32
4120 4327 1.386485 ATGGTCCTGGGGCAGCTAT 60.386 57.895 0.00 0.00 0.00 2.97
4121 4328 0.995675 ATGGTCCTGGGGCAGCTATT 60.996 55.000 0.00 0.00 0.00 1.73
4122 4329 0.327095 TGGTCCTGGGGCAGCTATTA 60.327 55.000 0.00 0.00 0.00 0.98
4123 4330 0.398318 GGTCCTGGGGCAGCTATTAG 59.602 60.000 0.00 0.00 0.00 1.73
4124 4331 1.424638 GTCCTGGGGCAGCTATTAGA 58.575 55.000 0.00 0.00 0.00 2.10
4125 4332 1.768870 GTCCTGGGGCAGCTATTAGAA 59.231 52.381 0.00 0.00 0.00 2.10
4126 4333 2.172717 GTCCTGGGGCAGCTATTAGAAA 59.827 50.000 0.00 0.00 0.00 2.52
4127 4334 2.439507 TCCTGGGGCAGCTATTAGAAAG 59.560 50.000 0.00 0.00 0.00 2.62
4128 4335 2.487986 CCTGGGGCAGCTATTAGAAAGG 60.488 54.545 0.00 0.00 0.00 3.11
4129 4336 2.439507 CTGGGGCAGCTATTAGAAAGGA 59.560 50.000 0.00 0.00 0.00 3.36
4130 4337 2.439507 TGGGGCAGCTATTAGAAAGGAG 59.560 50.000 0.00 0.00 0.00 3.69
4131 4338 2.706190 GGGGCAGCTATTAGAAAGGAGA 59.294 50.000 0.00 0.00 0.00 3.71
4132 4339 3.244387 GGGGCAGCTATTAGAAAGGAGAG 60.244 52.174 0.00 0.00 0.00 3.20
4133 4340 3.643792 GGGCAGCTATTAGAAAGGAGAGA 59.356 47.826 0.00 0.00 0.00 3.10
4134 4341 4.502431 GGGCAGCTATTAGAAAGGAGAGAC 60.502 50.000 0.00 0.00 0.00 3.36
4135 4342 4.295051 GCAGCTATTAGAAAGGAGAGACG 58.705 47.826 0.00 0.00 0.00 4.18
4136 4343 4.036971 GCAGCTATTAGAAAGGAGAGACGA 59.963 45.833 0.00 0.00 0.00 4.20
4137 4344 5.450688 GCAGCTATTAGAAAGGAGAGACGAA 60.451 44.000 0.00 0.00 0.00 3.85
4138 4345 5.974751 CAGCTATTAGAAAGGAGAGACGAAC 59.025 44.000 0.00 0.00 0.00 3.95
4139 4346 5.068067 AGCTATTAGAAAGGAGAGACGAACC 59.932 44.000 0.00 0.00 0.00 3.62
4140 4347 4.739587 ATTAGAAAGGAGAGACGAACCC 57.260 45.455 0.00 0.00 0.00 4.11
4141 4348 2.011122 AGAAAGGAGAGACGAACCCA 57.989 50.000 0.00 0.00 0.00 4.51
4142 4349 1.619332 AGAAAGGAGAGACGAACCCAC 59.381 52.381 0.00 0.00 0.00 4.61
4143 4350 0.685660 AAAGGAGAGACGAACCCACC 59.314 55.000 0.00 0.00 0.00 4.61
4144 4351 1.192803 AAGGAGAGACGAACCCACCC 61.193 60.000 0.00 0.00 0.00 4.61
4145 4352 2.657066 GGAGAGACGAACCCACCCC 61.657 68.421 0.00 0.00 0.00 4.95
4146 4353 2.995574 AGAGACGAACCCACCCCG 60.996 66.667 0.00 0.00 0.00 5.73
4147 4354 4.754667 GAGACGAACCCACCCCGC 62.755 72.222 0.00 0.00 0.00 6.13
4152 4359 4.941309 GAACCCACCCCGCGTTGT 62.941 66.667 4.92 0.00 0.00 3.32
4153 4360 4.941309 AACCCACCCCGCGTTGTC 62.941 66.667 4.92 0.00 0.00 3.18
4156 4363 4.752879 CCACCCCGCGTTGTCGAT 62.753 66.667 4.92 0.00 39.71 3.59
4157 4364 2.740826 CACCCCGCGTTGTCGATT 60.741 61.111 4.92 0.00 39.71 3.34
4158 4365 2.433664 ACCCCGCGTTGTCGATTC 60.434 61.111 4.92 0.00 39.71 2.52
4159 4366 3.550992 CCCCGCGTTGTCGATTCG 61.551 66.667 4.92 0.00 39.71 3.34
4160 4367 3.550992 CCCGCGTTGTCGATTCGG 61.551 66.667 4.92 0.00 38.95 4.30
4161 4368 3.550992 CCGCGTTGTCGATTCGGG 61.551 66.667 4.92 13.57 36.88 5.14
4162 4369 2.505337 CGCGTTGTCGATTCGGGA 60.505 61.111 6.18 0.00 39.25 5.14
4163 4370 2.505498 CGCGTTGTCGATTCGGGAG 61.505 63.158 6.18 0.00 39.25 4.30
4164 4371 2.165301 GCGTTGTCGATTCGGGAGG 61.165 63.158 6.18 0.24 39.71 4.30
4165 4372 1.509463 CGTTGTCGATTCGGGAGGA 59.491 57.895 6.18 0.00 39.71 3.71
4166 4373 0.525668 CGTTGTCGATTCGGGAGGAG 60.526 60.000 6.18 0.00 39.71 3.69
4167 4374 0.815734 GTTGTCGATTCGGGAGGAGA 59.184 55.000 6.18 0.00 0.00 3.71
4168 4375 1.203994 GTTGTCGATTCGGGAGGAGAA 59.796 52.381 6.18 0.00 0.00 2.87
4169 4376 1.552578 TGTCGATTCGGGAGGAGAAA 58.447 50.000 6.18 0.00 0.00 2.52
4170 4377 1.203994 TGTCGATTCGGGAGGAGAAAC 59.796 52.381 6.18 0.00 0.00 2.78
4171 4378 1.477295 GTCGATTCGGGAGGAGAAACT 59.523 52.381 6.18 0.00 0.00 2.66
4172 4379 1.749634 TCGATTCGGGAGGAGAAACTC 59.250 52.381 6.18 0.00 36.76 3.01
4173 4380 1.751924 CGATTCGGGAGGAGAAACTCT 59.248 52.381 0.00 0.00 37.63 3.24
4174 4381 2.223618 CGATTCGGGAGGAGAAACTCTC 60.224 54.545 0.00 0.00 42.66 3.20
4177 4384 1.518302 GGGAGGAGAAACTCTCGCC 59.482 63.158 0.00 5.92 44.28 5.54
4180 4387 2.509561 GGAGAAACTCTCGCCGCC 60.510 66.667 0.00 0.00 44.28 6.13
4181 4388 2.509561 GAGAAACTCTCGCCGCCC 60.510 66.667 0.00 0.00 33.35 6.13
4182 4389 4.436998 AGAAACTCTCGCCGCCCG 62.437 66.667 0.00 0.00 38.61 6.13
4193 4400 4.840005 CCGCCCGCTTCCTCCTTC 62.840 72.222 0.00 0.00 0.00 3.46
4194 4401 4.840005 CGCCCGCTTCCTCCTTCC 62.840 72.222 0.00 0.00 0.00 3.46
4195 4402 4.491409 GCCCGCTTCCTCCTTCCC 62.491 72.222 0.00 0.00 0.00 3.97
4196 4403 2.689034 CCCGCTTCCTCCTTCCCT 60.689 66.667 0.00 0.00 0.00 4.20
4197 4404 2.301738 CCCGCTTCCTCCTTCCCTT 61.302 63.158 0.00 0.00 0.00 3.95
4198 4405 1.222113 CCGCTTCCTCCTTCCCTTC 59.778 63.158 0.00 0.00 0.00 3.46
4199 4406 1.222113 CGCTTCCTCCTTCCCTTCC 59.778 63.158 0.00 0.00 0.00 3.46
4200 4407 1.610327 GCTTCCTCCTTCCCTTCCC 59.390 63.158 0.00 0.00 0.00 3.97
4201 4408 0.916845 GCTTCCTCCTTCCCTTCCCT 60.917 60.000 0.00 0.00 0.00 4.20
4202 4409 1.675007 CTTCCTCCTTCCCTTCCCTT 58.325 55.000 0.00 0.00 0.00 3.95
4203 4410 1.283321 CTTCCTCCTTCCCTTCCCTTG 59.717 57.143 0.00 0.00 0.00 3.61
4204 4411 1.208165 TCCTCCTTCCCTTCCCTTGC 61.208 60.000 0.00 0.00 0.00 4.01
4205 4412 1.304617 CTCCTTCCCTTCCCTTGCC 59.695 63.158 0.00 0.00 0.00 4.52
4206 4413 2.044946 CCTTCCCTTCCCTTGCCG 60.045 66.667 0.00 0.00 0.00 5.69
4207 4414 2.751837 CTTCCCTTCCCTTGCCGC 60.752 66.667 0.00 0.00 0.00 6.53
4208 4415 4.360405 TTCCCTTCCCTTGCCGCC 62.360 66.667 0.00 0.00 0.00 6.13
4274 4481 3.431725 GGCGGGGCGTTTTCTCTG 61.432 66.667 0.00 0.00 0.00 3.35
4275 4482 3.431725 GCGGGGCGTTTTCTCTGG 61.432 66.667 0.00 0.00 0.00 3.86
4276 4483 3.431725 CGGGGCGTTTTCTCTGGC 61.432 66.667 0.00 0.00 0.00 4.85
4277 4484 2.034221 GGGGCGTTTTCTCTGGCT 59.966 61.111 0.00 0.00 0.00 4.75
4278 4485 2.335712 GGGGCGTTTTCTCTGGCTG 61.336 63.158 0.00 0.00 0.00 4.85
4279 4486 2.563427 GGCGTTTTCTCTGGCTGC 59.437 61.111 0.00 0.00 0.00 5.25
4280 4487 2.260869 GGCGTTTTCTCTGGCTGCA 61.261 57.895 0.50 0.00 0.00 4.41
4281 4488 1.589716 GGCGTTTTCTCTGGCTGCAT 61.590 55.000 0.50 0.00 0.00 3.96
4282 4489 0.455633 GCGTTTTCTCTGGCTGCATG 60.456 55.000 0.50 0.00 0.00 4.06
4283 4490 0.169672 CGTTTTCTCTGGCTGCATGG 59.830 55.000 0.50 0.00 0.00 3.66
4284 4491 0.108945 GTTTTCTCTGGCTGCATGGC 60.109 55.000 0.50 0.00 42.18 4.40
4285 4492 1.588824 TTTTCTCTGGCTGCATGGCG 61.589 55.000 0.50 0.00 45.14 5.69
4290 4497 3.800833 TGGCTGCATGGCGGATCT 61.801 61.111 0.50 0.00 45.14 2.75
4291 4498 2.517875 GGCTGCATGGCGGATCTT 60.518 61.111 0.50 0.00 37.02 2.40
4292 4499 2.719979 GCTGCATGGCGGATCTTG 59.280 61.111 0.34 0.00 37.02 3.02
4293 4500 2.842256 GCTGCATGGCGGATCTTGG 61.842 63.158 0.34 0.00 37.02 3.61
4294 4501 1.153107 CTGCATGGCGGATCTTGGA 60.153 57.895 0.00 0.00 37.02 3.53
4295 4502 1.153107 TGCATGGCGGATCTTGGAG 60.153 57.895 0.00 0.00 0.00 3.86
4296 4503 1.895707 GCATGGCGGATCTTGGAGG 60.896 63.158 0.00 0.00 0.00 4.30
4297 4504 1.832219 CATGGCGGATCTTGGAGGA 59.168 57.895 0.00 0.00 0.00 3.71
4298 4505 0.181114 CATGGCGGATCTTGGAGGAA 59.819 55.000 0.00 0.00 0.00 3.36
4299 4506 1.143813 ATGGCGGATCTTGGAGGAAT 58.856 50.000 0.00 0.00 0.00 3.01
4300 4507 0.181114 TGGCGGATCTTGGAGGAATG 59.819 55.000 0.00 0.00 0.00 2.67
4301 4508 0.469917 GGCGGATCTTGGAGGAATGA 59.530 55.000 0.00 0.00 0.00 2.57
4302 4509 1.587547 GCGGATCTTGGAGGAATGAC 58.412 55.000 0.00 0.00 0.00 3.06
4303 4510 1.811941 GCGGATCTTGGAGGAATGACC 60.812 57.143 0.00 0.00 39.35 4.02
4313 4520 1.437986 GGAATGACCTCCCTCGACG 59.562 63.158 0.00 0.00 35.41 5.12
4314 4521 1.437986 GAATGACCTCCCTCGACGG 59.562 63.158 0.00 0.00 0.00 4.79
4315 4522 2.630592 GAATGACCTCCCTCGACGGC 62.631 65.000 0.00 0.00 0.00 5.68
4332 4539 2.824041 CGGGCGGGTGGATTTGAG 60.824 66.667 0.00 0.00 0.00 3.02
4333 4540 2.440247 GGGCGGGTGGATTTGAGG 60.440 66.667 0.00 0.00 0.00 3.86
4334 4541 2.674754 GGCGGGTGGATTTGAGGA 59.325 61.111 0.00 0.00 0.00 3.71
4335 4542 1.227383 GGCGGGTGGATTTGAGGAT 59.773 57.895 0.00 0.00 0.00 3.24
4336 4543 1.103398 GGCGGGTGGATTTGAGGATG 61.103 60.000 0.00 0.00 0.00 3.51
4337 4544 1.103398 GCGGGTGGATTTGAGGATGG 61.103 60.000 0.00 0.00 0.00 3.51
4338 4545 1.103398 CGGGTGGATTTGAGGATGGC 61.103 60.000 0.00 0.00 0.00 4.40
4339 4546 0.259938 GGGTGGATTTGAGGATGGCT 59.740 55.000 0.00 0.00 0.00 4.75
4340 4547 1.342374 GGGTGGATTTGAGGATGGCTT 60.342 52.381 0.00 0.00 0.00 4.35
4341 4548 2.027385 GGTGGATTTGAGGATGGCTTC 58.973 52.381 0.00 0.00 0.00 3.86
4342 4549 2.621407 GGTGGATTTGAGGATGGCTTCA 60.621 50.000 2.60 0.00 0.00 3.02
4343 4550 2.686915 GTGGATTTGAGGATGGCTTCAG 59.313 50.000 2.60 0.00 31.29 3.02
4344 4551 1.680207 GGATTTGAGGATGGCTTCAGC 59.320 52.381 2.60 0.00 41.14 4.26
4345 4552 2.652590 GATTTGAGGATGGCTTCAGCT 58.347 47.619 2.60 0.00 41.70 4.24
4346 4553 1.830279 TTTGAGGATGGCTTCAGCTG 58.170 50.000 7.63 7.63 41.70 4.24
4347 4554 0.986527 TTGAGGATGGCTTCAGCTGA 59.013 50.000 13.74 13.74 41.70 4.26
4348 4555 0.540454 TGAGGATGGCTTCAGCTGAG 59.460 55.000 17.43 12.15 41.70 3.35
4349 4556 0.179051 GAGGATGGCTTCAGCTGAGG 60.179 60.000 20.86 20.86 41.70 3.86
4350 4557 0.913451 AGGATGGCTTCAGCTGAGGT 60.913 55.000 24.88 7.40 41.70 3.85
4351 4558 0.463474 GGATGGCTTCAGCTGAGGTC 60.463 60.000 22.49 22.49 41.70 3.85
4352 4559 0.809241 GATGGCTTCAGCTGAGGTCG 60.809 60.000 23.41 11.86 41.70 4.79
4353 4560 2.125350 GGCTTCAGCTGAGGTCGG 60.125 66.667 24.88 11.70 41.70 4.79
4354 4561 2.659610 GCTTCAGCTGAGGTCGGT 59.340 61.111 24.88 0.00 38.21 4.69
4355 4562 1.739562 GCTTCAGCTGAGGTCGGTG 60.740 63.158 24.88 8.67 38.21 4.94
4356 4563 1.079543 CTTCAGCTGAGGTCGGTGG 60.080 63.158 17.43 0.00 0.00 4.61
4357 4564 3.240134 TTCAGCTGAGGTCGGTGGC 62.240 63.158 17.43 0.00 0.00 5.01
4361 4568 4.742201 CTGAGGTCGGTGGCGGTG 62.742 72.222 0.00 0.00 0.00 4.94
4376 4583 4.265056 GTGGTGGTTGGCCGAGGT 62.265 66.667 0.00 0.00 37.67 3.85
4377 4584 3.494254 TGGTGGTTGGCCGAGGTT 61.494 61.111 0.00 0.00 37.67 3.50
4378 4585 2.983592 GGTGGTTGGCCGAGGTTG 60.984 66.667 0.00 0.00 37.67 3.77
4379 4586 2.983592 GTGGTTGGCCGAGGTTGG 60.984 66.667 0.00 0.00 37.67 3.77
4380 4587 4.278513 TGGTTGGCCGAGGTTGGG 62.279 66.667 0.00 0.00 37.67 4.12
4387 4594 3.636231 CCGAGGTTGGGCACTGGA 61.636 66.667 0.00 0.00 0.00 3.86
4388 4595 2.046892 CGAGGTTGGGCACTGGAG 60.047 66.667 0.00 0.00 0.00 3.86
4389 4596 2.360475 GAGGTTGGGCACTGGAGC 60.360 66.667 0.00 0.00 0.00 4.70
4390 4597 2.856000 AGGTTGGGCACTGGAGCT 60.856 61.111 0.00 0.00 34.17 4.09
4391 4598 2.360475 GGTTGGGCACTGGAGCTC 60.360 66.667 4.71 4.71 34.90 4.09
4392 4599 2.743928 GTTGGGCACTGGAGCTCG 60.744 66.667 7.83 0.00 38.00 5.03
4393 4600 2.922503 TTGGGCACTGGAGCTCGA 60.923 61.111 7.83 2.19 38.00 4.04
4394 4601 2.515979 TTGGGCACTGGAGCTCGAA 61.516 57.895 7.83 0.00 38.00 3.71
4395 4602 2.125350 GGGCACTGGAGCTCGAAG 60.125 66.667 7.83 10.45 34.17 3.79
4396 4603 2.817396 GGCACTGGAGCTCGAAGC 60.817 66.667 7.83 10.68 42.84 3.86
4397 4604 2.817396 GCACTGGAGCTCGAAGCC 60.817 66.667 7.83 0.00 43.77 4.35
4398 4605 2.507992 CACTGGAGCTCGAAGCCG 60.508 66.667 7.83 0.00 43.77 5.52
4399 4606 2.992114 ACTGGAGCTCGAAGCCGT 60.992 61.111 7.83 0.00 43.77 5.68
4400 4607 2.507992 CTGGAGCTCGAAGCCGTG 60.508 66.667 7.83 0.00 43.77 4.94
4421 4628 4.787280 CCTCTGCCTCCCTCCGGT 62.787 72.222 0.00 0.00 0.00 5.28
4422 4629 3.465403 CTCTGCCTCCCTCCGGTG 61.465 72.222 0.00 0.00 0.00 4.94
4464 4671 2.990479 GGACAAGCCCGATCTGGT 59.010 61.111 4.97 0.00 35.15 4.00
4465 4672 1.153349 GGACAAGCCCGATCTGGTC 60.153 63.158 4.97 3.63 36.51 4.02
4466 4673 1.617947 GGACAAGCCCGATCTGGTCT 61.618 60.000 4.97 0.11 37.24 3.85
4467 4674 0.179097 GACAAGCCCGATCTGGTCTC 60.179 60.000 4.97 0.00 34.83 3.36
4468 4675 0.904865 ACAAGCCCGATCTGGTCTCA 60.905 55.000 4.97 0.00 35.15 3.27
4469 4676 0.460987 CAAGCCCGATCTGGTCTCAC 60.461 60.000 4.97 0.00 35.15 3.51
4470 4677 1.617947 AAGCCCGATCTGGTCTCACC 61.618 60.000 4.97 0.00 39.22 4.02
4471 4678 3.095347 GCCCGATCTGGTCTCACCC 62.095 68.421 4.97 0.00 37.50 4.61
4472 4679 2.786495 CCCGATCTGGTCTCACCCG 61.786 68.421 0.00 0.00 37.50 5.28
4473 4680 2.786495 CCGATCTGGTCTCACCCGG 61.786 68.421 0.00 0.00 37.50 5.73
4474 4681 2.786495 CGATCTGGTCTCACCCGGG 61.786 68.421 22.25 22.25 37.50 5.73
4475 4682 3.083997 ATCTGGTCTCACCCGGGC 61.084 66.667 24.08 2.72 37.50 6.13
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
113 122 1.165270 CGTTTCCCTCGGCTGATTTT 58.835 50.000 0.00 0.00 0.00 1.82
117 126 2.204461 TCACGTTTCCCTCGGCTGA 61.204 57.895 0.00 0.00 0.00 4.26
121 130 2.424705 TTCGGTCACGTTTCCCTCGG 62.425 60.000 0.00 0.00 41.85 4.63
123 132 1.289800 GCTTCGGTCACGTTTCCCTC 61.290 60.000 0.00 0.00 41.85 4.30
143 152 3.425162 AGTTGGTGATTCCTCAAGACC 57.575 47.619 0.00 0.00 37.07 3.85
223 232 9.616156 TTCTAAATTAGCCAATAAATACCGTCA 57.384 29.630 0.00 0.00 0.00 4.35
269 278 8.303876 GGAAAGTCCATTTTAACAAGCAAGATA 58.696 33.333 0.00 0.00 36.28 1.98
295 304 6.498304 ACATAAAGTTTGTGCTTCTGAACTG 58.502 36.000 11.83 0.00 33.02 3.16
337 346 7.792374 TGCTCATGGTCTTTTAGCTAAATAG 57.208 36.000 19.27 17.37 34.28 1.73
344 353 5.314923 TCAAATGCTCATGGTCTTTTAGC 57.685 39.130 0.00 0.00 0.00 3.09
381 390 1.283029 AGTCTACATTGCATGGCAGGT 59.717 47.619 0.00 0.00 40.61 4.00
621 640 4.158764 TGTGTGGGTTTGGTAGAAAGTTTG 59.841 41.667 0.00 0.00 0.00 2.93
939 965 1.411394 CGTTGCTTGCCTTTGTGATG 58.589 50.000 0.00 0.00 0.00 3.07
2100 2136 4.142403 CGCAAATAAATGGTGTCCATCAGT 60.142 41.667 1.60 0.00 44.40 3.41
2155 2191 4.767578 TTATCAGGAGAGAAGCATTGCT 57.232 40.909 5.03 5.03 42.56 3.91
2348 2384 2.632537 ACCTTGTAGGATCACCCTTGT 58.367 47.619 0.00 0.00 44.85 3.16
2662 2775 7.369803 ACATCTCAATTGTTGCTTACTAGTG 57.630 36.000 5.39 0.00 0.00 2.74
2960 3074 7.657336 TGTATCCTTTCTCGCAAAAAGAAAAT 58.343 30.769 4.51 0.00 41.02 1.82
3017 3131 6.204688 TCTGAATAACGGCATGCTTAAATAGG 59.795 38.462 18.92 2.09 0.00 2.57
3033 3147 6.758886 CCAGAACAGATAGGTGTCTGAATAAC 59.241 42.308 10.40 0.00 46.77 1.89
3041 3155 4.342378 TGCTATCCAGAACAGATAGGTGTC 59.658 45.833 9.24 0.00 42.28 3.67
3051 3167 6.346096 GGTGTAAACTATGCTATCCAGAACA 58.654 40.000 0.00 0.00 0.00 3.18
3199 3315 9.274065 CTACTGTGTGAAAAGTAAAGAAACAAC 57.726 33.333 0.00 0.00 0.00 3.32
3219 3336 6.764560 ACGTGGTGTATTTTTCTTTCTACTGT 59.235 34.615 0.00 0.00 0.00 3.55
3221 3338 7.797038 AACGTGGTGTATTTTTCTTTCTACT 57.203 32.000 0.00 0.00 0.00 2.57
3228 3345 3.319689 CCCCAAACGTGGTGTATTTTTCT 59.680 43.478 0.00 0.00 44.30 2.52
3363 3480 2.076863 AGACGATTAAGCACAAGTGGC 58.923 47.619 2.00 0.00 0.00 5.01
3431 3548 0.945813 GATCTTCAGCCTGAGCATGC 59.054 55.000 10.51 10.51 43.56 4.06
3572 3690 3.073798 TCCAGGTGCTCATAACTTTCCAA 59.926 43.478 0.00 0.00 0.00 3.53
3746 3893 3.184382 TCCCCCATTTCTTTCTTTCCC 57.816 47.619 0.00 0.00 0.00 3.97
3753 3900 2.721906 TCCAGTCTTCCCCCATTTCTTT 59.278 45.455 0.00 0.00 0.00 2.52
3824 4020 2.928334 CAGATGAATTGGGGGAGACAG 58.072 52.381 0.00 0.00 0.00 3.51
3828 4024 1.961394 CATGCAGATGAATTGGGGGAG 59.039 52.381 0.00 0.00 0.00 4.30
3923 4130 2.817258 TGGGCTTTTCTGGTACGAAATG 59.183 45.455 0.00 2.13 32.92 2.32
3928 4135 1.821216 ACATGGGCTTTTCTGGTACG 58.179 50.000 0.00 0.00 0.00 3.67
3929 4136 4.523083 TCATACATGGGCTTTTCTGGTAC 58.477 43.478 0.00 0.00 0.00 3.34
3930 4137 4.853468 TCATACATGGGCTTTTCTGGTA 57.147 40.909 0.00 0.00 0.00 3.25
3931 4138 3.737559 TCATACATGGGCTTTTCTGGT 57.262 42.857 0.00 0.00 0.00 4.00
3932 4139 3.763360 TGTTCATACATGGGCTTTTCTGG 59.237 43.478 0.00 0.00 0.00 3.86
3933 4140 5.389859 TTGTTCATACATGGGCTTTTCTG 57.610 39.130 0.00 0.00 33.44 3.02
3934 4141 4.463891 CCTTGTTCATACATGGGCTTTTCT 59.536 41.667 0.00 0.00 42.83 2.52
3935 4142 4.747810 CCTTGTTCATACATGGGCTTTTC 58.252 43.478 0.00 0.00 42.83 2.29
3936 4143 4.806640 CCTTGTTCATACATGGGCTTTT 57.193 40.909 0.00 0.00 42.83 2.27
3942 4149 5.920193 AATCAACCCTTGTTCATACATGG 57.080 39.130 0.00 0.00 44.95 3.66
3943 4150 8.522830 AGTAAAATCAACCCTTGTTCATACATG 58.477 33.333 0.00 0.00 33.44 3.21
3944 4151 8.650143 AGTAAAATCAACCCTTGTTCATACAT 57.350 30.769 0.00 0.00 33.44 2.29
3945 4152 8.472007 AAGTAAAATCAACCCTTGTTCATACA 57.528 30.769 0.00 0.00 30.42 2.29
3946 4153 8.573035 TGAAGTAAAATCAACCCTTGTTCATAC 58.427 33.333 0.00 0.00 30.42 2.39
3947 4154 8.573035 GTGAAGTAAAATCAACCCTTGTTCATA 58.427 33.333 0.00 0.00 30.42 2.15
3948 4155 7.433680 GTGAAGTAAAATCAACCCTTGTTCAT 58.566 34.615 0.00 0.00 30.42 2.57
3949 4156 6.459024 CGTGAAGTAAAATCAACCCTTGTTCA 60.459 38.462 0.00 0.00 30.42 3.18
3950 4157 5.912955 CGTGAAGTAAAATCAACCCTTGTTC 59.087 40.000 0.00 0.00 30.42 3.18
3951 4158 5.221165 CCGTGAAGTAAAATCAACCCTTGTT 60.221 40.000 0.00 0.00 34.14 2.83
3952 4159 4.277423 CCGTGAAGTAAAATCAACCCTTGT 59.723 41.667 0.00 0.00 0.00 3.16
3953 4160 4.320935 CCCGTGAAGTAAAATCAACCCTTG 60.321 45.833 0.00 0.00 0.00 3.61
3954 4161 3.824443 CCCGTGAAGTAAAATCAACCCTT 59.176 43.478 0.00 0.00 0.00 3.95
3955 4162 3.418047 CCCGTGAAGTAAAATCAACCCT 58.582 45.455 0.00 0.00 0.00 4.34
3956 4163 2.490509 CCCCGTGAAGTAAAATCAACCC 59.509 50.000 0.00 0.00 0.00 4.11
3957 4164 2.094906 GCCCCGTGAAGTAAAATCAACC 60.095 50.000 0.00 0.00 0.00 3.77
3958 4165 2.817844 AGCCCCGTGAAGTAAAATCAAC 59.182 45.455 0.00 0.00 0.00 3.18
3959 4166 3.149005 AGCCCCGTGAAGTAAAATCAA 57.851 42.857 0.00 0.00 0.00 2.57
3960 4167 2.871096 AGCCCCGTGAAGTAAAATCA 57.129 45.000 0.00 0.00 0.00 2.57
3961 4168 3.869832 GAGTAGCCCCGTGAAGTAAAATC 59.130 47.826 0.00 0.00 0.00 2.17
3962 4169 3.262405 TGAGTAGCCCCGTGAAGTAAAAT 59.738 43.478 0.00 0.00 0.00 1.82
3963 4170 2.633967 TGAGTAGCCCCGTGAAGTAAAA 59.366 45.455 0.00 0.00 0.00 1.52
3964 4171 2.232941 CTGAGTAGCCCCGTGAAGTAAA 59.767 50.000 0.00 0.00 0.00 2.01
3965 4172 1.822990 CTGAGTAGCCCCGTGAAGTAA 59.177 52.381 0.00 0.00 0.00 2.24
3966 4173 1.471119 CTGAGTAGCCCCGTGAAGTA 58.529 55.000 0.00 0.00 0.00 2.24
3967 4174 1.889530 GCTGAGTAGCCCCGTGAAGT 61.890 60.000 0.00 0.00 44.33 3.01
3968 4175 1.153549 GCTGAGTAGCCCCGTGAAG 60.154 63.158 0.00 0.00 44.33 3.02
3969 4176 2.978824 GCTGAGTAGCCCCGTGAA 59.021 61.111 0.00 0.00 44.33 3.18
3978 4185 0.654683 GCGGCTTGAATGCTGAGTAG 59.345 55.000 0.00 0.00 41.56 2.57
3979 4186 0.036483 TGCGGCTTGAATGCTGAGTA 60.036 50.000 0.00 0.00 41.56 2.59
3980 4187 0.890542 TTGCGGCTTGAATGCTGAGT 60.891 50.000 0.00 0.00 41.56 3.41
3981 4188 0.455633 GTTGCGGCTTGAATGCTGAG 60.456 55.000 0.00 0.00 41.56 3.35
3982 4189 0.890542 AGTTGCGGCTTGAATGCTGA 60.891 50.000 0.00 0.00 41.56 4.26
3983 4190 0.731514 CAGTTGCGGCTTGAATGCTG 60.732 55.000 0.00 0.00 41.91 4.41
3984 4191 1.582968 CAGTTGCGGCTTGAATGCT 59.417 52.632 0.00 0.00 0.00 3.79
3985 4192 2.090524 GCAGTTGCGGCTTGAATGC 61.091 57.895 0.00 4.97 0.00 3.56
3986 4193 4.157817 GCAGTTGCGGCTTGAATG 57.842 55.556 0.00 0.00 0.00 2.67
3996 4203 3.426568 GCCACCGAGAGCAGTTGC 61.427 66.667 0.00 0.00 42.49 4.17
3997 4204 2.031516 CAGCCACCGAGAGCAGTTG 61.032 63.158 0.00 0.00 0.00 3.16
3998 4205 2.345244 CAGCCACCGAGAGCAGTT 59.655 61.111 0.00 0.00 0.00 3.16
3999 4206 2.919856 ACAGCCACCGAGAGCAGT 60.920 61.111 0.00 0.00 0.00 4.40
4000 4207 2.125753 GACAGCCACCGAGAGCAG 60.126 66.667 0.00 0.00 0.00 4.24
4001 4208 2.440385 CTTGACAGCCACCGAGAGCA 62.440 60.000 0.00 0.00 0.00 4.26
4002 4209 1.739562 CTTGACAGCCACCGAGAGC 60.740 63.158 0.00 0.00 0.00 4.09
4003 4210 1.739562 GCTTGACAGCCACCGAGAG 60.740 63.158 0.00 0.00 40.61 3.20
4004 4211 2.343758 GCTTGACAGCCACCGAGA 59.656 61.111 0.00 0.00 40.61 4.04
4005 4212 2.031012 TGCTTGACAGCCACCGAG 59.969 61.111 0.00 0.00 46.74 4.63
4006 4213 2.280797 GTGCTTGACAGCCACCGA 60.281 61.111 0.00 0.00 46.74 4.69
4007 4214 3.357079 GGTGCTTGACAGCCACCG 61.357 66.667 9.87 0.00 46.74 4.94
4013 4220 2.806608 ATTTTGCAGGTGCTTGACAG 57.193 45.000 3.18 0.00 42.66 3.51
4014 4221 2.694628 AGAATTTTGCAGGTGCTTGACA 59.305 40.909 3.18 0.00 42.66 3.58
4015 4222 3.243501 TGAGAATTTTGCAGGTGCTTGAC 60.244 43.478 3.18 0.00 42.66 3.18
4016 4223 2.957680 TGAGAATTTTGCAGGTGCTTGA 59.042 40.909 3.18 0.00 42.66 3.02
4017 4224 3.374220 TGAGAATTTTGCAGGTGCTTG 57.626 42.857 3.18 0.00 42.66 4.01
4018 4225 4.312443 CATTGAGAATTTTGCAGGTGCTT 58.688 39.130 3.18 0.00 42.66 3.91
4019 4226 3.863400 GCATTGAGAATTTTGCAGGTGCT 60.863 43.478 3.18 0.00 42.66 4.40
4020 4227 2.414138 GCATTGAGAATTTTGCAGGTGC 59.586 45.455 0.00 0.00 42.50 5.01
4021 4228 2.997986 GGCATTGAGAATTTTGCAGGTG 59.002 45.455 0.00 0.00 36.82 4.00
4022 4229 2.901839 AGGCATTGAGAATTTTGCAGGT 59.098 40.909 0.00 0.00 36.82 4.00
4023 4230 3.259064 CAGGCATTGAGAATTTTGCAGG 58.741 45.455 0.00 0.00 36.82 4.85
4024 4231 2.671396 GCAGGCATTGAGAATTTTGCAG 59.329 45.455 0.00 0.00 36.82 4.41
4025 4232 2.300723 AGCAGGCATTGAGAATTTTGCA 59.699 40.909 0.00 0.00 36.82 4.08
4026 4233 2.968675 AGCAGGCATTGAGAATTTTGC 58.031 42.857 0.00 0.00 0.00 3.68
4027 4234 4.817517 AGAAGCAGGCATTGAGAATTTTG 58.182 39.130 0.00 0.00 0.00 2.44
4028 4235 5.476614 GAAGAAGCAGGCATTGAGAATTTT 58.523 37.500 0.00 0.00 0.00 1.82
4029 4236 4.081807 GGAAGAAGCAGGCATTGAGAATTT 60.082 41.667 0.00 0.00 0.00 1.82
4030 4237 3.446516 GGAAGAAGCAGGCATTGAGAATT 59.553 43.478 0.00 0.00 0.00 2.17
4031 4238 3.022406 GGAAGAAGCAGGCATTGAGAAT 58.978 45.455 0.00 0.00 0.00 2.40
4032 4239 2.224843 TGGAAGAAGCAGGCATTGAGAA 60.225 45.455 0.00 0.00 0.00 2.87
4033 4240 1.352017 TGGAAGAAGCAGGCATTGAGA 59.648 47.619 0.00 0.00 0.00 3.27
4034 4241 1.830279 TGGAAGAAGCAGGCATTGAG 58.170 50.000 0.00 0.00 0.00 3.02
4035 4242 2.097036 CATGGAAGAAGCAGGCATTGA 58.903 47.619 0.00 0.00 0.00 2.57
4036 4243 2.097036 TCATGGAAGAAGCAGGCATTG 58.903 47.619 0.00 0.00 0.00 2.82
4037 4244 2.519771 TCATGGAAGAAGCAGGCATT 57.480 45.000 0.00 0.00 0.00 3.56
4038 4245 2.494870 GTTTCATGGAAGAAGCAGGCAT 59.505 45.455 0.00 0.00 0.00 4.40
4039 4246 1.888512 GTTTCATGGAAGAAGCAGGCA 59.111 47.619 0.00 0.00 0.00 4.75
4040 4247 1.888512 TGTTTCATGGAAGAAGCAGGC 59.111 47.619 0.00 0.00 34.46 4.85
4041 4248 3.119245 CCATGTTTCATGGAAGAAGCAGG 60.119 47.826 20.19 0.00 41.06 4.85
4042 4249 3.675228 GCCATGTTTCATGGAAGAAGCAG 60.675 47.826 26.56 3.55 41.06 4.24
4043 4250 2.231964 GCCATGTTTCATGGAAGAAGCA 59.768 45.455 26.56 0.00 41.77 3.91
4044 4251 2.733227 CGCCATGTTTCATGGAAGAAGC 60.733 50.000 26.56 12.49 41.64 3.86
4045 4252 2.489329 ACGCCATGTTTCATGGAAGAAG 59.511 45.455 26.56 15.49 41.64 2.85
4046 4253 2.513753 ACGCCATGTTTCATGGAAGAA 58.486 42.857 26.56 0.00 41.64 2.52
4047 4254 2.198827 ACGCCATGTTTCATGGAAGA 57.801 45.000 26.56 0.00 41.64 2.87
4048 4255 2.415893 GGAACGCCATGTTTCATGGAAG 60.416 50.000 26.56 21.09 42.09 3.46
4049 4256 1.543802 GGAACGCCATGTTTCATGGAA 59.456 47.619 26.56 0.00 42.09 3.53
4050 4257 1.173043 GGAACGCCATGTTTCATGGA 58.827 50.000 26.56 0.00 42.09 3.41
4051 4258 0.887247 TGGAACGCCATGTTTCATGG 59.113 50.000 20.43 20.43 41.27 3.66
4062 4269 6.913873 TTAGACTTAATTGTATGGAACGCC 57.086 37.500 0.00 0.00 0.00 5.68
4063 4270 8.193250 TCTTTAGACTTAATTGTATGGAACGC 57.807 34.615 0.00 0.00 0.00 4.84
4076 4283 9.607988 TGTGTTTCTCAACATCTTTAGACTTAA 57.392 29.630 0.00 0.00 44.85 1.85
4077 4284 9.778741 ATGTGTTTCTCAACATCTTTAGACTTA 57.221 29.630 0.00 0.00 44.85 2.24
4078 4285 8.562892 CATGTGTTTCTCAACATCTTTAGACTT 58.437 33.333 0.00 0.00 44.85 3.01
4079 4286 7.173907 CCATGTGTTTCTCAACATCTTTAGACT 59.826 37.037 0.00 0.00 44.85 3.24
4080 4287 7.041098 ACCATGTGTTTCTCAACATCTTTAGAC 60.041 37.037 0.00 0.00 44.85 2.59
4081 4288 6.998074 ACCATGTGTTTCTCAACATCTTTAGA 59.002 34.615 0.00 0.00 44.85 2.10
4082 4289 7.206981 ACCATGTGTTTCTCAACATCTTTAG 57.793 36.000 0.00 0.00 44.85 1.85
4083 4290 6.206634 GGACCATGTGTTTCTCAACATCTTTA 59.793 38.462 0.00 0.00 44.85 1.85
4084 4291 5.010012 GGACCATGTGTTTCTCAACATCTTT 59.990 40.000 0.00 0.00 44.85 2.52
4085 4292 4.520492 GGACCATGTGTTTCTCAACATCTT 59.480 41.667 0.00 0.00 44.85 2.40
4086 4293 4.074970 GGACCATGTGTTTCTCAACATCT 58.925 43.478 0.00 0.00 44.85 2.90
4087 4294 4.074970 AGGACCATGTGTTTCTCAACATC 58.925 43.478 0.00 0.00 44.85 3.06
4088 4295 3.822735 CAGGACCATGTGTTTCTCAACAT 59.177 43.478 0.00 0.00 44.85 2.71
4089 4296 3.213506 CAGGACCATGTGTTTCTCAACA 58.786 45.455 0.00 0.00 40.82 3.33
4090 4297 2.554032 CCAGGACCATGTGTTTCTCAAC 59.446 50.000 0.00 0.00 0.00 3.18
4091 4298 2.488891 CCCAGGACCATGTGTTTCTCAA 60.489 50.000 0.00 0.00 0.00 3.02
4092 4299 1.073763 CCCAGGACCATGTGTTTCTCA 59.926 52.381 0.00 0.00 0.00 3.27
4093 4300 1.614317 CCCCAGGACCATGTGTTTCTC 60.614 57.143 0.00 0.00 0.00 2.87
4094 4301 0.405585 CCCCAGGACCATGTGTTTCT 59.594 55.000 0.00 0.00 0.00 2.52
4095 4302 1.250840 GCCCCAGGACCATGTGTTTC 61.251 60.000 0.00 0.00 0.00 2.78
4096 4303 1.228862 GCCCCAGGACCATGTGTTT 60.229 57.895 0.00 0.00 0.00 2.83
4097 4304 2.430704 CTGCCCCAGGACCATGTGTT 62.431 60.000 0.00 0.00 0.00 3.32
4098 4305 2.858476 TGCCCCAGGACCATGTGT 60.858 61.111 0.00 0.00 0.00 3.72
4099 4306 2.044650 CTGCCCCAGGACCATGTG 60.045 66.667 0.00 0.00 0.00 3.21
4100 4307 4.052518 GCTGCCCCAGGACCATGT 62.053 66.667 0.00 0.00 31.21 3.21
4101 4308 1.713005 ATAGCTGCCCCAGGACCATG 61.713 60.000 0.00 0.00 31.21 3.66
4102 4309 0.995675 AATAGCTGCCCCAGGACCAT 60.996 55.000 0.00 0.00 31.21 3.55
4103 4310 0.327095 TAATAGCTGCCCCAGGACCA 60.327 55.000 0.00 0.00 31.21 4.02
4104 4311 0.398318 CTAATAGCTGCCCCAGGACC 59.602 60.000 0.00 0.00 31.21 4.46
4105 4312 1.424638 TCTAATAGCTGCCCCAGGAC 58.575 55.000 0.00 0.00 31.21 3.85
4106 4313 2.190398 TTCTAATAGCTGCCCCAGGA 57.810 50.000 0.00 0.00 31.21 3.86
4107 4314 2.487986 CCTTTCTAATAGCTGCCCCAGG 60.488 54.545 0.00 0.00 31.21 4.45
4108 4315 2.439507 TCCTTTCTAATAGCTGCCCCAG 59.560 50.000 0.00 0.00 34.12 4.45
4109 4316 2.439507 CTCCTTTCTAATAGCTGCCCCA 59.560 50.000 0.00 0.00 0.00 4.96
4110 4317 2.706190 TCTCCTTTCTAATAGCTGCCCC 59.294 50.000 0.00 0.00 0.00 5.80
4111 4318 3.643792 TCTCTCCTTTCTAATAGCTGCCC 59.356 47.826 0.00 0.00 0.00 5.36
4112 4319 4.627058 GTCTCTCCTTTCTAATAGCTGCC 58.373 47.826 0.00 0.00 0.00 4.85
4113 4320 4.036971 TCGTCTCTCCTTTCTAATAGCTGC 59.963 45.833 0.00 0.00 0.00 5.25
4114 4321 5.759506 TCGTCTCTCCTTTCTAATAGCTG 57.240 43.478 0.00 0.00 0.00 4.24
4115 4322 5.068067 GGTTCGTCTCTCCTTTCTAATAGCT 59.932 44.000 0.00 0.00 0.00 3.32
4116 4323 5.283294 GGTTCGTCTCTCCTTTCTAATAGC 58.717 45.833 0.00 0.00 0.00 2.97
4117 4324 5.360144 TGGGTTCGTCTCTCCTTTCTAATAG 59.640 44.000 0.00 0.00 0.00 1.73
4118 4325 5.126707 GTGGGTTCGTCTCTCCTTTCTAATA 59.873 44.000 0.00 0.00 0.00 0.98
4119 4326 4.081586 GTGGGTTCGTCTCTCCTTTCTAAT 60.082 45.833 0.00 0.00 0.00 1.73
4120 4327 3.257624 GTGGGTTCGTCTCTCCTTTCTAA 59.742 47.826 0.00 0.00 0.00 2.10
4121 4328 2.824341 GTGGGTTCGTCTCTCCTTTCTA 59.176 50.000 0.00 0.00 0.00 2.10
4122 4329 1.619332 GTGGGTTCGTCTCTCCTTTCT 59.381 52.381 0.00 0.00 0.00 2.52
4123 4330 1.337917 GGTGGGTTCGTCTCTCCTTTC 60.338 57.143 0.00 0.00 0.00 2.62
4124 4331 0.685660 GGTGGGTTCGTCTCTCCTTT 59.314 55.000 0.00 0.00 0.00 3.11
4125 4332 1.192803 GGGTGGGTTCGTCTCTCCTT 61.193 60.000 2.66 0.00 31.40 3.36
4126 4333 1.609794 GGGTGGGTTCGTCTCTCCT 60.610 63.158 2.66 0.00 31.40 3.69
4127 4334 2.657066 GGGGTGGGTTCGTCTCTCC 61.657 68.421 0.00 0.00 0.00 3.71
4128 4335 2.979649 GGGGTGGGTTCGTCTCTC 59.020 66.667 0.00 0.00 0.00 3.20
4129 4336 2.995574 CGGGGTGGGTTCGTCTCT 60.996 66.667 0.00 0.00 0.00 3.10
4130 4337 4.754667 GCGGGGTGGGTTCGTCTC 62.755 72.222 0.00 0.00 0.00 3.36
4139 4346 4.752879 ATCGACAACGCGGGGTGG 62.753 66.667 22.46 9.64 39.58 4.61
4140 4347 2.736682 GAATCGACAACGCGGGGTG 61.737 63.158 16.95 16.95 39.58 4.61
4141 4348 2.433664 GAATCGACAACGCGGGGT 60.434 61.111 12.47 8.05 39.58 4.95
4142 4349 3.550992 CGAATCGACAACGCGGGG 61.551 66.667 12.47 4.01 39.58 5.73
4143 4350 3.550992 CCGAATCGACAACGCGGG 61.551 66.667 12.47 4.46 38.37 6.13
4144 4351 3.550992 CCCGAATCGACAACGCGG 61.551 66.667 12.47 0.00 40.42 6.46
4145 4352 2.505337 TCCCGAATCGACAACGCG 60.505 61.111 3.53 3.53 39.58 6.01
4146 4353 2.165301 CCTCCCGAATCGACAACGC 61.165 63.158 3.36 0.00 39.58 4.84
4147 4354 0.525668 CTCCTCCCGAATCGACAACG 60.526 60.000 3.36 0.00 41.26 4.10
4148 4355 0.815734 TCTCCTCCCGAATCGACAAC 59.184 55.000 3.36 0.00 0.00 3.32
4149 4356 1.552578 TTCTCCTCCCGAATCGACAA 58.447 50.000 3.36 0.00 0.00 3.18
4150 4357 1.203994 GTTTCTCCTCCCGAATCGACA 59.796 52.381 3.36 0.00 0.00 4.35
4151 4358 1.477295 AGTTTCTCCTCCCGAATCGAC 59.523 52.381 3.36 0.00 0.00 4.20
4152 4359 1.749634 GAGTTTCTCCTCCCGAATCGA 59.250 52.381 3.36 0.00 0.00 3.59
4153 4360 1.751924 AGAGTTTCTCCTCCCGAATCG 59.248 52.381 0.00 0.00 31.53 3.34
4154 4361 2.223618 CGAGAGTTTCTCCTCCCGAATC 60.224 54.545 0.79 0.00 40.34 2.52
4155 4362 1.751924 CGAGAGTTTCTCCTCCCGAAT 59.248 52.381 0.79 0.00 40.34 3.34
4156 4363 1.174783 CGAGAGTTTCTCCTCCCGAA 58.825 55.000 0.79 0.00 40.34 4.30
4157 4364 1.313812 GCGAGAGTTTCTCCTCCCGA 61.314 60.000 0.79 0.00 40.34 5.14
4158 4365 1.139947 GCGAGAGTTTCTCCTCCCG 59.860 63.158 0.79 0.00 40.34 5.14
4159 4366 1.518302 GGCGAGAGTTTCTCCTCCC 59.482 63.158 0.79 0.00 40.34 4.30
4160 4367 1.139947 CGGCGAGAGTTTCTCCTCC 59.860 63.158 0.00 2.25 40.34 4.30
4161 4368 1.517475 GCGGCGAGAGTTTCTCCTC 60.517 63.158 12.98 0.00 40.34 3.71
4162 4369 2.574399 GCGGCGAGAGTTTCTCCT 59.426 61.111 12.98 0.00 40.34 3.69
4163 4370 2.509561 GGCGGCGAGAGTTTCTCC 60.510 66.667 12.98 0.00 40.34 3.71
4164 4371 2.509561 GGGCGGCGAGAGTTTCTC 60.510 66.667 12.98 0.00 40.06 2.87
4165 4372 4.436998 CGGGCGGCGAGAGTTTCT 62.437 66.667 12.98 0.00 0.00 2.52
4176 4383 4.840005 GAAGGAGGAAGCGGGCGG 62.840 72.222 0.00 0.00 0.00 6.13
4177 4384 4.840005 GGAAGGAGGAAGCGGGCG 62.840 72.222 0.00 0.00 0.00 6.13
4178 4385 4.491409 GGGAAGGAGGAAGCGGGC 62.491 72.222 0.00 0.00 0.00 6.13
4179 4386 2.258748 GAAGGGAAGGAGGAAGCGGG 62.259 65.000 0.00 0.00 0.00 6.13
4180 4387 1.222113 GAAGGGAAGGAGGAAGCGG 59.778 63.158 0.00 0.00 0.00 5.52
4181 4388 1.222113 GGAAGGGAAGGAGGAAGCG 59.778 63.158 0.00 0.00 0.00 4.68
4182 4389 0.916845 AGGGAAGGGAAGGAGGAAGC 60.917 60.000 0.00 0.00 0.00 3.86
4183 4390 1.283321 CAAGGGAAGGGAAGGAGGAAG 59.717 57.143 0.00 0.00 0.00 3.46
4184 4391 1.372501 CAAGGGAAGGGAAGGAGGAA 58.627 55.000 0.00 0.00 0.00 3.36
4185 4392 1.208165 GCAAGGGAAGGGAAGGAGGA 61.208 60.000 0.00 0.00 0.00 3.71
4186 4393 1.304617 GCAAGGGAAGGGAAGGAGG 59.695 63.158 0.00 0.00 0.00 4.30
4187 4394 1.304617 GGCAAGGGAAGGGAAGGAG 59.695 63.158 0.00 0.00 0.00 3.69
4188 4395 2.602676 CGGCAAGGGAAGGGAAGGA 61.603 63.158 0.00 0.00 0.00 3.36
4189 4396 2.044946 CGGCAAGGGAAGGGAAGG 60.045 66.667 0.00 0.00 0.00 3.46
4190 4397 2.751837 GCGGCAAGGGAAGGGAAG 60.752 66.667 0.00 0.00 0.00 3.46
4191 4398 4.360405 GGCGGCAAGGGAAGGGAA 62.360 66.667 3.07 0.00 0.00 3.97
4257 4464 3.431725 CAGAGAAAACGCCCCGCC 61.432 66.667 0.00 0.00 0.00 6.13
4258 4465 3.431725 CCAGAGAAAACGCCCCGC 61.432 66.667 0.00 0.00 0.00 6.13
4259 4466 3.431725 GCCAGAGAAAACGCCCCG 61.432 66.667 0.00 0.00 0.00 5.73
4260 4467 2.034221 AGCCAGAGAAAACGCCCC 59.966 61.111 0.00 0.00 0.00 5.80
4261 4468 2.982744 GCAGCCAGAGAAAACGCCC 61.983 63.158 0.00 0.00 0.00 6.13
4262 4469 1.589716 ATGCAGCCAGAGAAAACGCC 61.590 55.000 0.00 0.00 0.00 5.68
4263 4470 0.455633 CATGCAGCCAGAGAAAACGC 60.456 55.000 0.00 0.00 0.00 4.84
4264 4471 0.169672 CCATGCAGCCAGAGAAAACG 59.830 55.000 0.00 0.00 0.00 3.60
4265 4472 0.108945 GCCATGCAGCCAGAGAAAAC 60.109 55.000 0.00 0.00 0.00 2.43
4266 4473 1.588824 CGCCATGCAGCCAGAGAAAA 61.589 55.000 0.00 0.00 0.00 2.29
4267 4474 2.042259 CGCCATGCAGCCAGAGAAA 61.042 57.895 0.00 0.00 0.00 2.52
4268 4475 2.437180 CGCCATGCAGCCAGAGAA 60.437 61.111 0.00 0.00 0.00 2.87
4269 4476 4.478371 CCGCCATGCAGCCAGAGA 62.478 66.667 0.00 0.00 0.00 3.10
4270 4477 3.769369 ATCCGCCATGCAGCCAGAG 62.769 63.158 0.00 0.00 0.00 3.35
4271 4478 3.762429 GATCCGCCATGCAGCCAGA 62.762 63.158 0.00 0.00 0.00 3.86
4272 4479 3.285215 GATCCGCCATGCAGCCAG 61.285 66.667 0.00 0.00 0.00 4.85
4273 4480 3.348554 AAGATCCGCCATGCAGCCA 62.349 57.895 0.00 0.00 0.00 4.75
4274 4481 2.517875 AAGATCCGCCATGCAGCC 60.518 61.111 0.00 0.00 0.00 4.85
4275 4482 2.719979 CAAGATCCGCCATGCAGC 59.280 61.111 0.00 0.00 0.00 5.25
4276 4483 1.153107 TCCAAGATCCGCCATGCAG 60.153 57.895 0.00 0.00 0.00 4.41
4277 4484 1.153107 CTCCAAGATCCGCCATGCA 60.153 57.895 0.00 0.00 0.00 3.96
4278 4485 1.895707 CCTCCAAGATCCGCCATGC 60.896 63.158 0.00 0.00 0.00 4.06
4279 4486 0.181114 TTCCTCCAAGATCCGCCATG 59.819 55.000 0.00 0.00 0.00 3.66
4280 4487 1.143813 ATTCCTCCAAGATCCGCCAT 58.856 50.000 0.00 0.00 0.00 4.40
4281 4488 0.181114 CATTCCTCCAAGATCCGCCA 59.819 55.000 0.00 0.00 0.00 5.69
4282 4489 0.469917 TCATTCCTCCAAGATCCGCC 59.530 55.000 0.00 0.00 0.00 6.13
4283 4490 1.587547 GTCATTCCTCCAAGATCCGC 58.412 55.000 0.00 0.00 0.00 5.54
4284 4491 1.765314 AGGTCATTCCTCCAAGATCCG 59.235 52.381 0.00 0.00 44.42 4.18
4295 4502 1.437986 CGTCGAGGGAGGTCATTCC 59.562 63.158 0.00 0.00 36.46 3.01
4296 4503 1.437986 CCGTCGAGGGAGGTCATTC 59.562 63.158 19.44 0.00 35.97 2.67
4297 4504 2.722201 GCCGTCGAGGGAGGTCATT 61.722 63.158 27.69 0.00 41.48 2.57
4298 4505 3.148279 GCCGTCGAGGGAGGTCAT 61.148 66.667 27.69 0.00 41.48 3.06
4315 4522 2.824041 CTCAAATCCACCCGCCCG 60.824 66.667 0.00 0.00 0.00 6.13
4316 4523 2.284515 ATCCTCAAATCCACCCGCCC 62.285 60.000 0.00 0.00 0.00 6.13
4317 4524 1.103398 CATCCTCAAATCCACCCGCC 61.103 60.000 0.00 0.00 0.00 6.13
4318 4525 1.103398 CCATCCTCAAATCCACCCGC 61.103 60.000 0.00 0.00 0.00 6.13
4319 4526 1.103398 GCCATCCTCAAATCCACCCG 61.103 60.000 0.00 0.00 0.00 5.28
4320 4527 0.259938 AGCCATCCTCAAATCCACCC 59.740 55.000 0.00 0.00 0.00 4.61
4321 4528 2.027385 GAAGCCATCCTCAAATCCACC 58.973 52.381 0.00 0.00 0.00 4.61
4322 4529 2.686915 CTGAAGCCATCCTCAAATCCAC 59.313 50.000 0.00 0.00 0.00 4.02
4323 4530 2.947243 GCTGAAGCCATCCTCAAATCCA 60.947 50.000 0.00 0.00 34.31 3.41
4324 4531 1.680207 GCTGAAGCCATCCTCAAATCC 59.320 52.381 0.00 0.00 34.31 3.01
4325 4532 2.358267 CAGCTGAAGCCATCCTCAAATC 59.642 50.000 8.42 0.00 43.38 2.17
4326 4533 2.025605 TCAGCTGAAGCCATCCTCAAAT 60.026 45.455 15.67 0.00 43.38 2.32
4327 4534 1.352017 TCAGCTGAAGCCATCCTCAAA 59.648 47.619 15.67 0.00 43.38 2.69
4328 4535 0.986527 TCAGCTGAAGCCATCCTCAA 59.013 50.000 15.67 0.00 43.38 3.02
4329 4536 0.540454 CTCAGCTGAAGCCATCCTCA 59.460 55.000 18.85 0.00 43.38 3.86
4330 4537 0.179051 CCTCAGCTGAAGCCATCCTC 60.179 60.000 18.85 0.00 43.38 3.71
4331 4538 0.913451 ACCTCAGCTGAAGCCATCCT 60.913 55.000 18.85 0.00 43.38 3.24
4332 4539 0.463474 GACCTCAGCTGAAGCCATCC 60.463 60.000 18.85 0.00 43.38 3.51
4333 4540 0.809241 CGACCTCAGCTGAAGCCATC 60.809 60.000 18.85 9.63 43.38 3.51
4334 4541 1.220206 CGACCTCAGCTGAAGCCAT 59.780 57.895 18.85 1.09 43.38 4.40
4335 4542 2.659016 CGACCTCAGCTGAAGCCA 59.341 61.111 18.85 0.00 43.38 4.75
4336 4543 2.125350 CCGACCTCAGCTGAAGCC 60.125 66.667 18.85 2.77 43.38 4.35
4337 4544 1.739562 CACCGACCTCAGCTGAAGC 60.740 63.158 18.85 8.82 42.49 3.86
4338 4545 1.079543 CCACCGACCTCAGCTGAAG 60.080 63.158 18.85 14.75 0.00 3.02
4339 4546 3.059982 CCACCGACCTCAGCTGAA 58.940 61.111 18.85 1.63 0.00 3.02
4340 4547 3.695606 GCCACCGACCTCAGCTGA 61.696 66.667 17.19 17.19 0.00 4.26
4344 4551 4.742201 CACCGCCACCGACCTCAG 62.742 72.222 0.00 0.00 36.29 3.35
4359 4566 3.785122 AACCTCGGCCAACCACCAC 62.785 63.158 2.24 0.00 34.57 4.16
4360 4567 3.494254 AACCTCGGCCAACCACCA 61.494 61.111 2.24 0.00 34.57 4.17
4361 4568 2.983592 CAACCTCGGCCAACCACC 60.984 66.667 2.24 0.00 34.57 4.61
4362 4569 2.983592 CCAACCTCGGCCAACCAC 60.984 66.667 2.24 0.00 34.57 4.16
4363 4570 4.278513 CCCAACCTCGGCCAACCA 62.279 66.667 2.24 0.00 34.57 3.67
4365 4572 4.966787 TGCCCAACCTCGGCCAAC 62.967 66.667 2.24 0.00 46.48 3.77
4366 4573 4.966787 GTGCCCAACCTCGGCCAA 62.967 66.667 2.24 0.00 46.48 4.52
4370 4577 3.612247 CTCCAGTGCCCAACCTCGG 62.612 68.421 0.00 0.00 0.00 4.63
4371 4578 2.046892 CTCCAGTGCCCAACCTCG 60.047 66.667 0.00 0.00 0.00 4.63
4372 4579 2.360475 GCTCCAGTGCCCAACCTC 60.360 66.667 0.00 0.00 0.00 3.85
4373 4580 2.856000 AGCTCCAGTGCCCAACCT 60.856 61.111 0.00 0.00 0.00 3.50
4374 4581 2.360475 GAGCTCCAGTGCCCAACC 60.360 66.667 0.87 0.00 0.00 3.77
4375 4582 2.731691 TTCGAGCTCCAGTGCCCAAC 62.732 60.000 8.47 0.00 0.00 3.77
4376 4583 2.454832 CTTCGAGCTCCAGTGCCCAA 62.455 60.000 8.47 0.00 0.00 4.12
4377 4584 2.922503 TTCGAGCTCCAGTGCCCA 60.923 61.111 8.47 0.00 0.00 5.36
4378 4585 2.125350 CTTCGAGCTCCAGTGCCC 60.125 66.667 8.47 0.00 0.00 5.36
4379 4586 2.817396 GCTTCGAGCTCCAGTGCC 60.817 66.667 8.47 0.00 38.45 5.01
4380 4587 2.817396 GGCTTCGAGCTCCAGTGC 60.817 66.667 8.47 7.57 41.99 4.40
4381 4588 2.507992 CGGCTTCGAGCTCCAGTG 60.508 66.667 8.47 0.00 41.99 3.66
4382 4589 2.992114 ACGGCTTCGAGCTCCAGT 60.992 61.111 8.47 0.00 41.99 4.00
4383 4590 2.507992 CACGGCTTCGAGCTCCAG 60.508 66.667 8.47 5.65 41.99 3.86
4384 4591 4.742201 GCACGGCTTCGAGCTCCA 62.742 66.667 8.47 0.00 44.77 3.86
4447 4654 1.153349 GACCAGATCGGGCTTGTCC 60.153 63.158 12.27 0.00 41.26 4.02
4448 4655 4.522971 GACCAGATCGGGCTTGTC 57.477 61.111 12.27 0.00 41.26 3.18
4454 4661 2.786495 CGGGTGAGACCAGATCGGG 61.786 68.421 10.69 10.69 41.02 5.14
4455 4662 2.786495 CCGGGTGAGACCAGATCGG 61.786 68.421 0.00 2.55 41.02 4.18
4456 4663 2.786495 CCCGGGTGAGACCAGATCG 61.786 68.421 14.18 0.00 41.02 3.69
4457 4664 3.095347 GCCCGGGTGAGACCAGATC 62.095 68.421 24.63 0.00 41.02 2.75
4458 4665 3.083997 GCCCGGGTGAGACCAGAT 61.084 66.667 24.63 0.00 41.02 2.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.