Multiple sequence alignment - TraesCS6D01G026900

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G026900 chr6D 100.000 4277 0 0 1 4277 10325936 10321660 0.000000e+00 7899.0
1 TraesCS6D01G026900 chr6D 100.000 32 0 0 602 633 10326117 10326148 4.620000e-05 60.2
2 TraesCS6D01G026900 chr6A 96.698 3664 93 9 615 4277 11788493 11784857 0.000000e+00 6071.0
3 TraesCS6D01G026900 chr6B 94.440 3579 164 15 709 4277 18858177 18854624 0.000000e+00 5474.0
4 TraesCS6D01G026900 chr6B 91.176 272 24 0 173 444 18871341 18871070 1.880000e-98 370.0
5 TraesCS6D01G026900 chr6B 93.000 100 7 0 569 668 18870996 18870897 3.450000e-31 147.0
6 TraesCS6D01G026900 chr6B 95.522 67 3 0 35 101 18920699 18920633 1.630000e-19 108.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G026900 chr6D 10321660 10325936 4276 True 7899 7899 100.000 1 4277 1 chr6D.!!$R1 4276
1 TraesCS6D01G026900 chr6A 11784857 11788493 3636 True 6071 6071 96.698 615 4277 1 chr6A.!!$R1 3662
2 TraesCS6D01G026900 chr6B 18854624 18858177 3553 True 5474 5474 94.440 709 4277 1 chr6B.!!$R1 3568

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
139 140 0.032615 TGGTGGCCTGAAAAACCTGT 60.033 50.0 3.32 0.0 33.65 4.00 F
153 154 0.035439 ACCTGTACAATTCAGCCGGG 60.035 55.0 2.18 0.0 0.00 5.73 F
1833 1847 0.036732 TTTTCAGGCGGATGAGTGCT 59.963 50.0 0.00 0.0 0.00 4.40 F
1842 1856 0.107945 GGATGAGTGCTGAGGGTGTC 60.108 60.0 0.00 0.0 0.00 3.67 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1833 1847 0.107703 GATCAATGCCGACACCCTCA 60.108 55.000 0.00 0.0 0.00 3.86 R
1959 1973 1.203523 ACAAGCGCACTTCCAACAAAA 59.796 42.857 11.47 0.0 32.29 2.44 R
2836 2850 1.053835 TGCCTATCCCTCATTCCGCA 61.054 55.000 0.00 0.0 0.00 5.69 R
3689 3708 3.145286 TCTGTCAATGTGCCGAATTTGA 58.855 40.909 0.00 0.0 0.00 2.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 2.947127 GCCTTCTGCATATCCTCCTT 57.053 50.000 0.00 0.00 40.77 3.36
33 34 2.502295 GCCTTCTGCATATCCTCCTTG 58.498 52.381 0.00 0.00 40.77 3.61
34 35 2.502295 CCTTCTGCATATCCTCCTTGC 58.498 52.381 0.00 0.00 36.91 4.01
35 36 2.158711 CCTTCTGCATATCCTCCTTGCA 60.159 50.000 0.00 0.00 43.63 4.08
36 37 2.627515 TCTGCATATCCTCCTTGCAC 57.372 50.000 0.00 0.00 41.18 4.57
37 38 1.839354 TCTGCATATCCTCCTTGCACA 59.161 47.619 0.00 0.00 41.18 4.57
38 39 2.440627 TCTGCATATCCTCCTTGCACAT 59.559 45.455 0.00 0.00 41.18 3.21
39 40 2.812591 CTGCATATCCTCCTTGCACATC 59.187 50.000 0.00 0.00 41.18 3.06
40 41 2.173143 TGCATATCCTCCTTGCACATCA 59.827 45.455 0.00 0.00 41.18 3.07
41 42 3.216800 GCATATCCTCCTTGCACATCAA 58.783 45.455 0.00 0.00 36.40 2.57
42 43 3.633525 GCATATCCTCCTTGCACATCAAA 59.366 43.478 0.00 0.00 36.40 2.69
43 44 4.261489 GCATATCCTCCTTGCACATCAAAG 60.261 45.833 0.00 0.00 36.40 2.77
44 45 2.957402 TCCTCCTTGCACATCAAAGT 57.043 45.000 0.00 0.00 33.65 2.66
45 46 3.228188 TCCTCCTTGCACATCAAAGTT 57.772 42.857 0.00 0.00 33.65 2.66
46 47 3.149196 TCCTCCTTGCACATCAAAGTTC 58.851 45.455 0.00 0.00 33.65 3.01
47 48 2.886523 CCTCCTTGCACATCAAAGTTCA 59.113 45.455 0.00 0.00 33.65 3.18
48 49 3.057736 CCTCCTTGCACATCAAAGTTCAG 60.058 47.826 0.00 0.00 33.65 3.02
49 50 2.886523 TCCTTGCACATCAAAGTTCAGG 59.113 45.455 0.00 0.00 33.65 3.86
50 51 2.624838 CCTTGCACATCAAAGTTCAGGT 59.375 45.455 0.00 0.00 33.65 4.00
51 52 3.551454 CCTTGCACATCAAAGTTCAGGTG 60.551 47.826 0.00 0.00 33.65 4.00
52 53 1.955778 TGCACATCAAAGTTCAGGTGG 59.044 47.619 0.00 0.00 0.00 4.61
53 54 1.956477 GCACATCAAAGTTCAGGTGGT 59.044 47.619 0.00 0.00 0.00 4.16
54 55 2.030805 GCACATCAAAGTTCAGGTGGTC 60.031 50.000 0.00 0.00 0.00 4.02
55 56 3.480470 CACATCAAAGTTCAGGTGGTCT 58.520 45.455 0.00 0.00 0.00 3.85
56 57 4.641396 CACATCAAAGTTCAGGTGGTCTA 58.359 43.478 0.00 0.00 0.00 2.59
57 58 4.692625 CACATCAAAGTTCAGGTGGTCTAG 59.307 45.833 0.00 0.00 0.00 2.43
58 59 4.348168 ACATCAAAGTTCAGGTGGTCTAGT 59.652 41.667 0.00 0.00 0.00 2.57
59 60 5.163195 ACATCAAAGTTCAGGTGGTCTAGTT 60.163 40.000 0.00 0.00 0.00 2.24
60 61 4.957296 TCAAAGTTCAGGTGGTCTAGTTC 58.043 43.478 0.00 0.00 0.00 3.01
61 62 3.662247 AAGTTCAGGTGGTCTAGTTCG 57.338 47.619 0.00 0.00 0.00 3.95
62 63 2.872732 AGTTCAGGTGGTCTAGTTCGA 58.127 47.619 0.00 0.00 0.00 3.71
63 64 2.557490 AGTTCAGGTGGTCTAGTTCGAC 59.443 50.000 0.00 0.00 0.00 4.20
70 71 2.311124 GGTCTAGTTCGACCCATTGG 57.689 55.000 0.00 0.00 46.19 3.16
71 72 1.653151 GTCTAGTTCGACCCATTGGC 58.347 55.000 0.00 0.00 33.59 4.52
72 73 0.539986 TCTAGTTCGACCCATTGGCC 59.460 55.000 0.00 0.00 33.59 5.36
73 74 0.463833 CTAGTTCGACCCATTGGCCC 60.464 60.000 0.00 0.00 33.59 5.80
74 75 1.917336 TAGTTCGACCCATTGGCCCC 61.917 60.000 0.00 0.00 33.59 5.80
75 76 3.260888 TTCGACCCATTGGCCCCA 61.261 61.111 0.00 0.00 33.59 4.96
76 77 2.846497 TTCGACCCATTGGCCCCAA 61.846 57.895 0.00 1.67 40.47 4.12
77 78 2.043046 CGACCCATTGGCCCCAAT 60.043 61.111 6.72 6.72 46.35 3.16
83 84 2.043046 ATTGGCCCCAATGGACCG 60.043 61.111 11.57 0.00 44.34 4.79
84 85 2.929964 ATTGGCCCCAATGGACCGT 61.930 57.895 11.57 0.00 44.34 4.83
85 86 1.576368 ATTGGCCCCAATGGACCGTA 61.576 55.000 11.57 0.00 44.34 4.02
86 87 2.124445 GGCCCCAATGGACCGTAC 60.124 66.667 0.00 0.00 35.25 3.67
87 88 2.124445 GCCCCAATGGACCGTACC 60.124 66.667 0.00 0.00 35.39 3.34
88 89 2.676265 GCCCCAATGGACCGTACCT 61.676 63.158 0.00 0.00 35.39 3.08
89 90 1.339644 GCCCCAATGGACCGTACCTA 61.340 60.000 0.00 0.00 35.39 3.08
90 91 0.466963 CCCCAATGGACCGTACCTAC 59.533 60.000 0.00 0.00 35.39 3.18
91 92 1.196911 CCCAATGGACCGTACCTACA 58.803 55.000 0.00 0.00 0.00 2.74
92 93 1.766496 CCCAATGGACCGTACCTACAT 59.234 52.381 0.00 0.00 0.00 2.29
93 94 2.967201 CCCAATGGACCGTACCTACATA 59.033 50.000 0.00 0.00 0.00 2.29
94 95 3.581332 CCCAATGGACCGTACCTACATAT 59.419 47.826 0.00 0.00 0.00 1.78
95 96 4.041198 CCCAATGGACCGTACCTACATATT 59.959 45.833 0.00 0.00 0.00 1.28
96 97 4.994852 CCAATGGACCGTACCTACATATTG 59.005 45.833 0.00 0.00 0.00 1.90
97 98 5.454187 CCAATGGACCGTACCTACATATTGT 60.454 44.000 0.00 0.00 0.00 2.71
98 99 5.881923 ATGGACCGTACCTACATATTGTT 57.118 39.130 0.00 0.00 0.00 2.83
99 100 6.982160 ATGGACCGTACCTACATATTGTTA 57.018 37.500 0.00 0.00 0.00 2.41
100 101 6.147864 TGGACCGTACCTACATATTGTTAC 57.852 41.667 0.00 0.00 0.00 2.50
101 102 5.893255 TGGACCGTACCTACATATTGTTACT 59.107 40.000 0.00 0.00 0.00 2.24
102 103 7.059788 TGGACCGTACCTACATATTGTTACTA 58.940 38.462 0.00 0.00 0.00 1.82
103 104 7.725397 TGGACCGTACCTACATATTGTTACTAT 59.275 37.037 0.00 0.00 0.00 2.12
104 105 9.231297 GGACCGTACCTACATATTGTTACTATA 57.769 37.037 0.00 0.00 0.00 1.31
115 116 9.448587 ACATATTGTTACTATAAGGAGAAGGGT 57.551 33.333 0.00 0.00 0.00 4.34
130 131 3.490851 GGTAACCTGGTGGCCTGA 58.509 61.111 3.32 0.00 36.63 3.86
131 132 1.765074 GGTAACCTGGTGGCCTGAA 59.235 57.895 3.32 0.00 36.63 3.02
132 133 0.111639 GGTAACCTGGTGGCCTGAAA 59.888 55.000 3.32 0.00 36.63 2.69
133 134 1.479757 GGTAACCTGGTGGCCTGAAAA 60.480 52.381 3.32 0.00 36.63 2.29
134 135 2.312390 GTAACCTGGTGGCCTGAAAAA 58.688 47.619 3.32 0.00 36.63 1.94
135 136 1.119684 AACCTGGTGGCCTGAAAAAC 58.880 50.000 3.32 0.00 36.63 2.43
136 137 0.759060 ACCTGGTGGCCTGAAAAACC 60.759 55.000 3.32 1.76 36.63 3.27
137 138 0.469892 CCTGGTGGCCTGAAAAACCT 60.470 55.000 3.32 0.00 33.65 3.50
138 139 0.675633 CTGGTGGCCTGAAAAACCTG 59.324 55.000 3.32 1.87 33.65 4.00
139 140 0.032615 TGGTGGCCTGAAAAACCTGT 60.033 50.000 3.32 0.00 33.65 4.00
140 141 1.215673 TGGTGGCCTGAAAAACCTGTA 59.784 47.619 3.32 0.00 33.65 2.74
141 142 1.611977 GGTGGCCTGAAAAACCTGTAC 59.388 52.381 3.32 0.00 0.00 2.90
142 143 2.303175 GTGGCCTGAAAAACCTGTACA 58.697 47.619 3.32 0.00 0.00 2.90
143 144 2.691011 GTGGCCTGAAAAACCTGTACAA 59.309 45.455 3.32 0.00 0.00 2.41
144 145 3.320826 GTGGCCTGAAAAACCTGTACAAT 59.679 43.478 3.32 0.00 0.00 2.71
145 146 3.964031 TGGCCTGAAAAACCTGTACAATT 59.036 39.130 3.32 0.00 0.00 2.32
146 147 4.038642 TGGCCTGAAAAACCTGTACAATTC 59.961 41.667 3.32 0.00 0.00 2.17
147 148 4.038642 GGCCTGAAAAACCTGTACAATTCA 59.961 41.667 0.00 2.81 0.00 2.57
148 149 5.222631 GCCTGAAAAACCTGTACAATTCAG 58.777 41.667 18.52 18.52 41.97 3.02
149 150 5.222631 CCTGAAAAACCTGTACAATTCAGC 58.777 41.667 19.33 2.60 41.34 4.26
150 151 5.195001 TGAAAAACCTGTACAATTCAGCC 57.805 39.130 0.00 0.00 0.00 4.85
151 152 3.915437 AAAACCTGTACAATTCAGCCG 57.085 42.857 0.00 0.00 0.00 5.52
152 153 1.821216 AACCTGTACAATTCAGCCGG 58.179 50.000 0.00 0.00 0.00 6.13
153 154 0.035439 ACCTGTACAATTCAGCCGGG 60.035 55.000 2.18 0.00 0.00 5.73
154 155 0.748005 CCTGTACAATTCAGCCGGGG 60.748 60.000 2.18 0.00 0.00 5.73
155 156 1.376609 CTGTACAATTCAGCCGGGGC 61.377 60.000 2.18 0.18 42.33 5.80
156 157 1.377987 GTACAATTCAGCCGGGGCA 60.378 57.895 12.97 0.00 44.88 5.36
157 158 0.963355 GTACAATTCAGCCGGGGCAA 60.963 55.000 12.97 0.00 44.88 4.52
158 159 0.251386 TACAATTCAGCCGGGGCAAA 60.251 50.000 12.97 6.24 44.88 3.68
159 160 1.118356 ACAATTCAGCCGGGGCAAAA 61.118 50.000 12.97 5.88 44.88 2.44
160 161 0.249955 CAATTCAGCCGGGGCAAAAT 59.750 50.000 12.97 7.98 44.88 1.82
161 162 0.536724 AATTCAGCCGGGGCAAAATC 59.463 50.000 12.97 0.00 44.88 2.17
162 163 1.666209 ATTCAGCCGGGGCAAAATCG 61.666 55.000 12.97 0.00 44.88 3.34
163 164 3.061848 CAGCCGGGGCAAAATCGT 61.062 61.111 12.97 0.00 44.88 3.73
164 165 2.282887 AGCCGGGGCAAAATCGTT 60.283 55.556 12.97 0.00 44.88 3.85
165 166 2.180769 GCCGGGGCAAAATCGTTC 59.819 61.111 2.18 0.00 41.49 3.95
166 167 2.483288 CCGGGGCAAAATCGTTCG 59.517 61.111 0.00 0.00 0.00 3.95
167 168 2.036006 CCGGGGCAAAATCGTTCGA 61.036 57.895 0.00 0.00 0.00 3.71
168 169 1.133869 CGGGGCAAAATCGTTCGAC 59.866 57.895 0.00 0.00 0.00 4.20
169 170 1.504900 GGGGCAAAATCGTTCGACC 59.495 57.895 0.00 0.00 0.00 4.79
170 171 1.504900 GGGCAAAATCGTTCGACCC 59.495 57.895 0.00 0.00 0.00 4.46
171 172 1.133869 GGCAAAATCGTTCGACCCG 59.866 57.895 0.00 0.00 0.00 5.28
172 173 1.293267 GGCAAAATCGTTCGACCCGA 61.293 55.000 8.62 8.62 38.89 5.14
173 174 0.725117 GCAAAATCGTTCGACCCGAT 59.275 50.000 12.13 12.13 46.29 4.18
174 175 1.529010 GCAAAATCGTTCGACCCGATG 60.529 52.381 17.10 9.66 43.75 3.84
175 176 1.062002 CAAAATCGTTCGACCCGATGG 59.938 52.381 17.10 8.60 43.75 3.51
176 177 1.087771 AAATCGTTCGACCCGATGGC 61.088 55.000 17.10 0.00 43.75 4.40
177 178 2.918230 AATCGTTCGACCCGATGGCC 62.918 60.000 17.10 0.00 43.75 5.36
188 189 4.545706 GATGGCCGGACCGCATCA 62.546 66.667 22.28 14.37 43.94 3.07
189 190 4.856801 ATGGCCGGACCGCATCAC 62.857 66.667 3.83 0.00 43.94 3.06
193 194 2.358125 CCGGACCGCATCACACAA 60.358 61.111 8.86 0.00 0.00 3.33
194 195 2.677003 CCGGACCGCATCACACAAC 61.677 63.158 8.86 0.00 0.00 3.32
195 196 2.860293 GGACCGCATCACACAACG 59.140 61.111 0.00 0.00 0.00 4.10
196 197 1.959226 GGACCGCATCACACAACGT 60.959 57.895 0.00 0.00 0.00 3.99
197 198 0.668096 GGACCGCATCACACAACGTA 60.668 55.000 0.00 0.00 0.00 3.57
198 199 0.437295 GACCGCATCACACAACGTAC 59.563 55.000 0.00 0.00 0.00 3.67
199 200 0.249531 ACCGCATCACACAACGTACA 60.250 50.000 0.00 0.00 0.00 2.90
200 201 0.162933 CCGCATCACACAACGTACAC 59.837 55.000 0.00 0.00 0.00 2.90
201 202 0.855995 CGCATCACACAACGTACACA 59.144 50.000 0.00 0.00 0.00 3.72
202 203 1.459209 CGCATCACACAACGTACACAT 59.541 47.619 0.00 0.00 0.00 3.21
203 204 2.664085 CGCATCACACAACGTACACATA 59.336 45.455 0.00 0.00 0.00 2.29
204 205 3.122111 CGCATCACACAACGTACACATAA 59.878 43.478 0.00 0.00 0.00 1.90
205 206 4.201676 CGCATCACACAACGTACACATAAT 60.202 41.667 0.00 0.00 0.00 1.28
206 207 5.627172 GCATCACACAACGTACACATAATT 58.373 37.500 0.00 0.00 0.00 1.40
207 208 6.083630 GCATCACACAACGTACACATAATTT 58.916 36.000 0.00 0.00 0.00 1.82
208 209 7.237871 GCATCACACAACGTACACATAATTTA 58.762 34.615 0.00 0.00 0.00 1.40
209 210 7.425309 GCATCACACAACGTACACATAATTTAG 59.575 37.037 0.00 0.00 0.00 1.85
210 211 6.823531 TCACACAACGTACACATAATTTAGC 58.176 36.000 0.00 0.00 0.00 3.09
211 212 6.019152 CACACAACGTACACATAATTTAGCC 58.981 40.000 0.00 0.00 0.00 3.93
212 213 5.701750 ACACAACGTACACATAATTTAGCCA 59.298 36.000 0.00 0.00 0.00 4.75
213 214 6.019152 CACAACGTACACATAATTTAGCCAC 58.981 40.000 0.00 0.00 0.00 5.01
214 215 5.122711 ACAACGTACACATAATTTAGCCACC 59.877 40.000 0.00 0.00 0.00 4.61
215 216 5.093849 ACGTACACATAATTTAGCCACCT 57.906 39.130 0.00 0.00 0.00 4.00
216 217 5.114081 ACGTACACATAATTTAGCCACCTC 58.886 41.667 0.00 0.00 0.00 3.85
217 218 4.510340 CGTACACATAATTTAGCCACCTCC 59.490 45.833 0.00 0.00 0.00 4.30
218 219 4.584638 ACACATAATTTAGCCACCTCCA 57.415 40.909 0.00 0.00 0.00 3.86
219 220 4.270008 ACACATAATTTAGCCACCTCCAC 58.730 43.478 0.00 0.00 0.00 4.02
220 221 3.632145 CACATAATTTAGCCACCTCCACC 59.368 47.826 0.00 0.00 0.00 4.61
221 222 3.527665 ACATAATTTAGCCACCTCCACCT 59.472 43.478 0.00 0.00 0.00 4.00
222 223 4.724798 ACATAATTTAGCCACCTCCACCTA 59.275 41.667 0.00 0.00 0.00 3.08
223 224 5.192923 ACATAATTTAGCCACCTCCACCTAA 59.807 40.000 0.00 0.00 0.00 2.69
224 225 4.668138 AATTTAGCCACCTCCACCTAAA 57.332 40.909 0.00 0.00 35.14 1.85
225 226 3.713826 TTTAGCCACCTCCACCTAAAG 57.286 47.619 0.00 0.00 0.00 1.85
226 227 2.634639 TAGCCACCTCCACCTAAAGA 57.365 50.000 0.00 0.00 0.00 2.52
227 228 1.280457 AGCCACCTCCACCTAAAGAG 58.720 55.000 0.00 0.00 0.00 2.85
228 229 0.984995 GCCACCTCCACCTAAAGAGT 59.015 55.000 0.00 0.00 0.00 3.24
229 230 1.351350 GCCACCTCCACCTAAAGAGTT 59.649 52.381 0.00 0.00 0.00 3.01
230 231 2.615747 GCCACCTCCACCTAAAGAGTTC 60.616 54.545 0.00 0.00 0.00 3.01
231 232 2.353803 CCACCTCCACCTAAAGAGTTCG 60.354 54.545 0.00 0.00 0.00 3.95
232 233 2.561419 CACCTCCACCTAAAGAGTTCGA 59.439 50.000 0.00 0.00 0.00 3.71
233 234 2.826725 ACCTCCACCTAAAGAGTTCGAG 59.173 50.000 0.00 0.00 0.00 4.04
234 235 3.090037 CCTCCACCTAAAGAGTTCGAGA 58.910 50.000 0.00 0.00 0.00 4.04
235 236 3.702045 CCTCCACCTAAAGAGTTCGAGAT 59.298 47.826 0.00 0.00 0.00 2.75
236 237 4.440802 CCTCCACCTAAAGAGTTCGAGATG 60.441 50.000 0.00 0.00 0.00 2.90
237 238 3.119101 TCCACCTAAAGAGTTCGAGATGC 60.119 47.826 0.00 0.00 0.00 3.91
238 239 3.368427 CCACCTAAAGAGTTCGAGATGCA 60.368 47.826 0.00 0.00 0.00 3.96
239 240 4.245660 CACCTAAAGAGTTCGAGATGCAA 58.754 43.478 0.00 0.00 0.00 4.08
240 241 4.328440 CACCTAAAGAGTTCGAGATGCAAG 59.672 45.833 0.00 0.00 0.00 4.01
241 242 3.868077 CCTAAAGAGTTCGAGATGCAAGG 59.132 47.826 0.00 0.00 0.00 3.61
242 243 1.731720 AAGAGTTCGAGATGCAAGGC 58.268 50.000 0.00 0.00 0.00 4.35
243 244 0.610174 AGAGTTCGAGATGCAAGGCA 59.390 50.000 0.00 0.00 44.86 4.75
244 245 1.002430 AGAGTTCGAGATGCAAGGCAA 59.998 47.619 0.00 0.00 43.62 4.52
245 246 1.129437 GAGTTCGAGATGCAAGGCAAC 59.871 52.381 0.00 0.00 43.62 4.17
246 247 0.169009 GTTCGAGATGCAAGGCAACC 59.831 55.000 0.00 0.00 43.62 3.77
247 248 1.298157 TTCGAGATGCAAGGCAACCG 61.298 55.000 0.00 0.00 43.62 4.44
248 249 2.034879 CGAGATGCAAGGCAACCGT 61.035 57.895 0.00 0.00 43.62 4.83
249 250 1.577328 CGAGATGCAAGGCAACCGTT 61.577 55.000 0.00 0.00 43.62 4.44
250 251 0.109597 GAGATGCAAGGCAACCGTTG 60.110 55.000 6.91 6.91 43.62 4.10
251 252 1.080569 GATGCAAGGCAACCGTTGG 60.081 57.895 13.12 0.00 43.62 3.77
252 253 1.805428 GATGCAAGGCAACCGTTGGT 61.805 55.000 13.12 0.00 43.62 3.67
253 254 1.805428 ATGCAAGGCAACCGTTGGTC 61.805 55.000 13.12 0.00 43.62 4.02
254 255 2.485795 GCAAGGCAACCGTTGGTCA 61.486 57.895 13.12 0.00 37.33 4.02
255 256 1.805428 GCAAGGCAACCGTTGGTCAT 61.805 55.000 13.12 0.00 37.33 3.06
256 257 0.240945 CAAGGCAACCGTTGGTCATC 59.759 55.000 13.12 0.00 33.12 2.92
257 258 0.179004 AAGGCAACCGTTGGTCATCA 60.179 50.000 13.12 0.00 33.12 3.07
258 259 0.606401 AGGCAACCGTTGGTCATCAG 60.606 55.000 13.12 0.00 33.12 2.90
259 260 1.586154 GGCAACCGTTGGTCATCAGG 61.586 60.000 13.12 0.00 33.12 3.86
260 261 1.586154 GCAACCGTTGGTCATCAGGG 61.586 60.000 13.12 0.00 33.12 4.45
261 262 1.303317 AACCGTTGGTCATCAGGGC 60.303 57.895 0.00 0.00 33.12 5.19
262 263 2.819595 CCGTTGGTCATCAGGGCG 60.820 66.667 0.00 0.00 0.00 6.13
263 264 3.499737 CGTTGGTCATCAGGGCGC 61.500 66.667 0.00 0.00 0.00 6.53
264 265 2.045926 GTTGGTCATCAGGGCGCT 60.046 61.111 7.64 0.00 0.00 5.92
265 266 2.046023 TTGGTCATCAGGGCGCTG 60.046 61.111 23.98 23.98 0.00 5.18
266 267 3.626996 TTGGTCATCAGGGCGCTGG 62.627 63.158 28.30 14.85 0.00 4.85
267 268 3.785859 GGTCATCAGGGCGCTGGA 61.786 66.667 28.30 16.87 0.00 3.86
268 269 2.268920 GTCATCAGGGCGCTGGAA 59.731 61.111 28.30 12.52 0.00 3.53
269 270 1.153086 GTCATCAGGGCGCTGGAAT 60.153 57.895 28.30 14.26 0.00 3.01
270 271 0.106708 GTCATCAGGGCGCTGGAATA 59.893 55.000 28.30 11.41 0.00 1.75
271 272 1.059098 TCATCAGGGCGCTGGAATAT 58.941 50.000 28.30 13.21 0.00 1.28
272 273 1.162698 CATCAGGGCGCTGGAATATG 58.837 55.000 28.30 20.19 0.00 1.78
273 274 1.059098 ATCAGGGCGCTGGAATATGA 58.941 50.000 28.30 9.82 0.00 2.15
274 275 1.059098 TCAGGGCGCTGGAATATGAT 58.941 50.000 28.30 0.00 0.00 2.45
275 276 1.002430 TCAGGGCGCTGGAATATGATC 59.998 52.381 28.30 0.00 0.00 2.92
276 277 1.059098 AGGGCGCTGGAATATGATCA 58.941 50.000 7.64 0.00 0.00 2.92
277 278 1.160137 GGGCGCTGGAATATGATCAC 58.840 55.000 7.64 0.00 0.00 3.06
278 279 1.160137 GGCGCTGGAATATGATCACC 58.840 55.000 7.64 0.00 0.00 4.02
279 280 1.543208 GGCGCTGGAATATGATCACCA 60.543 52.381 7.64 0.00 0.00 4.17
287 288 6.907853 TGGAATATGATCACCAGAGTAGAG 57.092 41.667 0.00 0.00 0.00 2.43
288 289 5.244851 TGGAATATGATCACCAGAGTAGAGC 59.755 44.000 0.00 0.00 0.00 4.09
289 290 5.244851 GGAATATGATCACCAGAGTAGAGCA 59.755 44.000 0.00 0.00 31.76 4.26
290 291 5.720371 ATATGATCACCAGAGTAGAGCAC 57.280 43.478 0.00 0.00 29.77 4.40
291 292 1.745653 TGATCACCAGAGTAGAGCACG 59.254 52.381 0.00 0.00 0.00 5.34
292 293 0.457851 ATCACCAGAGTAGAGCACGC 59.542 55.000 0.00 0.00 0.00 5.34
293 294 1.153745 CACCAGAGTAGAGCACGCC 60.154 63.158 0.00 0.00 0.00 5.68
294 295 2.103143 CCAGAGTAGAGCACGCCG 59.897 66.667 0.00 0.00 0.00 6.46
295 296 2.407428 CCAGAGTAGAGCACGCCGA 61.407 63.158 0.00 0.00 0.00 5.54
296 297 1.226435 CAGAGTAGAGCACGCCGAC 60.226 63.158 0.00 0.00 0.00 4.79
297 298 1.674651 AGAGTAGAGCACGCCGACA 60.675 57.895 0.00 0.00 0.00 4.35
298 299 1.514443 GAGTAGAGCACGCCGACAC 60.514 63.158 0.00 0.00 0.00 3.67
299 300 2.874780 GTAGAGCACGCCGACACG 60.875 66.667 0.00 0.00 39.50 4.49
300 301 4.771356 TAGAGCACGCCGACACGC 62.771 66.667 0.00 0.00 36.19 5.34
309 310 4.619227 CCGACACGCAACCCCTGT 62.619 66.667 0.00 0.00 0.00 4.00
310 311 2.590575 CGACACGCAACCCCTGTT 60.591 61.111 0.00 0.00 34.14 3.16
319 320 1.328279 CAACCCCTGTTGGTTTCTCC 58.672 55.000 0.00 0.00 46.45 3.71
320 321 0.930726 AACCCCTGTTGGTTTCTCCA 59.069 50.000 0.00 0.00 46.45 3.86
321 322 1.411074 AACCCCTGTTGGTTTCTCCAC 60.411 52.381 0.00 0.00 46.45 4.02
322 323 4.686093 AACCCCTGTTGGTTTCTCCACC 62.686 54.545 0.00 0.00 46.45 4.61
328 329 3.798794 TGGTTTCTCCACCACACAG 57.201 52.632 0.00 0.00 42.27 3.66
329 330 0.465460 TGGTTTCTCCACCACACAGC 60.465 55.000 0.00 0.00 42.27 4.40
330 331 1.172812 GGTTTCTCCACCACACAGCC 61.173 60.000 0.00 0.00 36.73 4.85
331 332 1.150536 TTTCTCCACCACACAGCCC 59.849 57.895 0.00 0.00 0.00 5.19
332 333 1.352622 TTTCTCCACCACACAGCCCT 61.353 55.000 0.00 0.00 0.00 5.19
333 334 1.352622 TTCTCCACCACACAGCCCTT 61.353 55.000 0.00 0.00 0.00 3.95
334 335 1.302832 CTCCACCACACAGCCCTTC 60.303 63.158 0.00 0.00 0.00 3.46
335 336 1.770110 TCCACCACACAGCCCTTCT 60.770 57.895 0.00 0.00 0.00 2.85
336 337 1.302832 CCACCACACAGCCCTTCTC 60.303 63.158 0.00 0.00 0.00 2.87
337 338 1.757306 CACCACACAGCCCTTCTCT 59.243 57.895 0.00 0.00 0.00 3.10
338 339 0.321122 CACCACACAGCCCTTCTCTC 60.321 60.000 0.00 0.00 0.00 3.20
339 340 1.298014 CCACACAGCCCTTCTCTCC 59.702 63.158 0.00 0.00 0.00 3.71
340 341 1.483595 CCACACAGCCCTTCTCTCCA 61.484 60.000 0.00 0.00 0.00 3.86
341 342 0.321122 CACACAGCCCTTCTCTCCAC 60.321 60.000 0.00 0.00 0.00 4.02
342 343 1.079543 CACAGCCCTTCTCTCCACG 60.080 63.158 0.00 0.00 0.00 4.94
343 344 2.125350 CAGCCCTTCTCTCCACGC 60.125 66.667 0.00 0.00 0.00 5.34
344 345 3.394836 AGCCCTTCTCTCCACGCC 61.395 66.667 0.00 0.00 0.00 5.68
345 346 4.821589 GCCCTTCTCTCCACGCCG 62.822 72.222 0.00 0.00 0.00 6.46
346 347 4.148825 CCCTTCTCTCCACGCCGG 62.149 72.222 0.00 0.00 0.00 6.13
347 348 3.382832 CCTTCTCTCCACGCCGGT 61.383 66.667 1.90 0.00 35.57 5.28
348 349 2.182030 CTTCTCTCCACGCCGGTC 59.818 66.667 1.90 0.00 35.57 4.79
349 350 2.282958 TTCTCTCCACGCCGGTCT 60.283 61.111 1.90 0.00 35.57 3.85
350 351 2.272918 CTTCTCTCCACGCCGGTCTC 62.273 65.000 1.90 0.00 35.57 3.36
351 352 3.062466 CTCTCCACGCCGGTCTCA 61.062 66.667 1.90 0.00 35.57 3.27
352 353 3.057547 CTCTCCACGCCGGTCTCAG 62.058 68.421 1.90 0.00 35.57 3.35
353 354 4.803426 CTCCACGCCGGTCTCAGC 62.803 72.222 1.90 0.00 35.57 4.26
356 357 4.379243 CACGCCGGTCTCAGCCTT 62.379 66.667 1.90 0.00 0.00 4.35
357 358 4.070552 ACGCCGGTCTCAGCCTTC 62.071 66.667 1.90 0.00 0.00 3.46
358 359 4.821589 CGCCGGTCTCAGCCTTCC 62.822 72.222 1.90 0.00 0.00 3.46
359 360 3.394836 GCCGGTCTCAGCCTTCCT 61.395 66.667 1.90 0.00 0.00 3.36
360 361 2.896443 CCGGTCTCAGCCTTCCTC 59.104 66.667 0.00 0.00 0.00 3.71
361 362 1.984570 CCGGTCTCAGCCTTCCTCA 60.985 63.158 0.00 0.00 0.00 3.86
362 363 1.333636 CCGGTCTCAGCCTTCCTCAT 61.334 60.000 0.00 0.00 0.00 2.90
363 364 0.103937 CGGTCTCAGCCTTCCTCATC 59.896 60.000 0.00 0.00 0.00 2.92
364 365 0.103937 GGTCTCAGCCTTCCTCATCG 59.896 60.000 0.00 0.00 0.00 3.84
365 366 0.820871 GTCTCAGCCTTCCTCATCGT 59.179 55.000 0.00 0.00 0.00 3.73
366 367 1.205893 GTCTCAGCCTTCCTCATCGTT 59.794 52.381 0.00 0.00 0.00 3.85
367 368 1.205655 TCTCAGCCTTCCTCATCGTTG 59.794 52.381 0.00 0.00 0.00 4.10
368 369 1.205655 CTCAGCCTTCCTCATCGTTGA 59.794 52.381 0.00 0.00 0.00 3.18
369 370 1.066858 TCAGCCTTCCTCATCGTTGAC 60.067 52.381 0.00 0.00 0.00 3.18
370 371 0.250513 AGCCTTCCTCATCGTTGACC 59.749 55.000 0.00 0.00 0.00 4.02
371 372 1.084370 GCCTTCCTCATCGTTGACCG 61.084 60.000 0.00 0.00 38.13 4.79
372 373 0.246635 CCTTCCTCATCGTTGACCGT 59.753 55.000 0.00 0.00 37.94 4.83
373 374 1.350193 CTTCCTCATCGTTGACCGTG 58.650 55.000 0.00 0.00 37.94 4.94
374 375 0.669318 TTCCTCATCGTTGACCGTGC 60.669 55.000 0.00 0.00 37.94 5.34
375 376 1.374125 CCTCATCGTTGACCGTGCA 60.374 57.895 0.00 0.00 37.94 4.57
376 377 0.948623 CCTCATCGTTGACCGTGCAA 60.949 55.000 0.00 0.00 37.94 4.08
377 378 0.439985 CTCATCGTTGACCGTGCAAG 59.560 55.000 0.00 0.00 37.94 4.01
378 379 1.154413 CATCGTTGACCGTGCAAGC 60.154 57.895 0.00 0.00 37.94 4.01
379 380 2.325082 ATCGTTGACCGTGCAAGCC 61.325 57.895 0.00 0.00 37.94 4.35
380 381 4.368808 CGTTGACCGTGCAAGCCG 62.369 66.667 0.00 0.00 0.00 5.52
381 382 4.683334 GTTGACCGTGCAAGCCGC 62.683 66.667 0.00 0.00 42.89 6.53
396 397 4.988598 CGCCAACCGCCAGACACT 62.989 66.667 0.00 0.00 0.00 3.55
397 398 3.357079 GCCAACCGCCAGACACTG 61.357 66.667 0.00 0.00 0.00 3.66
407 408 2.165380 CAGACACTGGAACATGCGG 58.835 57.895 0.00 0.00 38.20 5.69
408 409 1.003355 AGACACTGGAACATGCGGG 60.003 57.895 0.00 0.00 38.20 6.13
409 410 1.003839 GACACTGGAACATGCGGGA 60.004 57.895 0.00 0.00 38.20 5.14
410 411 1.298859 GACACTGGAACATGCGGGAC 61.299 60.000 0.00 0.00 38.20 4.46
423 424 4.849329 GGGACGCACTCGCTACCG 62.849 72.222 0.00 0.00 39.84 4.02
424 425 3.807538 GGACGCACTCGCTACCGA 61.808 66.667 0.00 0.00 42.01 4.69
434 435 4.175489 GCTACCGAGCGCGTCAGA 62.175 66.667 8.43 0.00 39.39 3.27
435 436 2.023461 CTACCGAGCGCGTCAGAG 59.977 66.667 8.43 0.00 35.23 3.35
436 437 2.745100 TACCGAGCGCGTCAGAGT 60.745 61.111 8.43 1.28 35.23 3.24
437 438 1.426816 CTACCGAGCGCGTCAGAGTA 61.427 60.000 8.43 2.49 35.23 2.59
438 439 1.426816 TACCGAGCGCGTCAGAGTAG 61.427 60.000 8.43 0.00 35.23 2.57
439 440 2.461945 CCGAGCGCGTCAGAGTAGA 61.462 63.158 8.43 0.00 35.23 2.59
440 441 1.011684 CGAGCGCGTCAGAGTAGAG 60.012 63.158 8.43 0.00 0.00 2.43
441 442 1.353804 GAGCGCGTCAGAGTAGAGG 59.646 63.158 8.43 0.00 0.00 3.69
442 443 1.078356 AGCGCGTCAGAGTAGAGGA 60.078 57.895 8.43 0.00 0.00 3.71
443 444 1.062845 GCGCGTCAGAGTAGAGGAC 59.937 63.158 8.43 0.00 0.00 3.85
447 448 2.869636 GTCAGAGTAGAGGACGGCA 58.130 57.895 0.00 0.00 0.00 5.69
448 449 1.394618 GTCAGAGTAGAGGACGGCAT 58.605 55.000 0.00 0.00 0.00 4.40
449 450 1.751924 GTCAGAGTAGAGGACGGCATT 59.248 52.381 0.00 0.00 0.00 3.56
450 451 1.751351 TCAGAGTAGAGGACGGCATTG 59.249 52.381 0.00 0.00 0.00 2.82
451 452 1.478510 CAGAGTAGAGGACGGCATTGT 59.521 52.381 0.00 0.00 0.00 2.71
452 453 1.751924 AGAGTAGAGGACGGCATTGTC 59.248 52.381 0.00 0.00 38.17 3.18
453 454 1.751924 GAGTAGAGGACGGCATTGTCT 59.248 52.381 0.00 0.00 38.91 3.41
454 455 2.166664 GAGTAGAGGACGGCATTGTCTT 59.833 50.000 0.00 0.00 38.91 3.01
455 456 2.567615 AGTAGAGGACGGCATTGTCTTT 59.432 45.455 0.00 0.00 38.91 2.52
456 457 1.813513 AGAGGACGGCATTGTCTTTG 58.186 50.000 0.00 0.00 38.91 2.77
457 458 0.804989 GAGGACGGCATTGTCTTTGG 59.195 55.000 0.00 0.00 38.91 3.28
458 459 1.212751 GGACGGCATTGTCTTTGGC 59.787 57.895 0.00 0.00 38.91 4.52
459 460 1.212751 GACGGCATTGTCTTTGGCC 59.787 57.895 0.00 0.00 42.98 5.36
460 461 1.228552 ACGGCATTGTCTTTGGCCT 60.229 52.632 3.32 0.00 44.23 5.19
461 462 0.827507 ACGGCATTGTCTTTGGCCTT 60.828 50.000 3.32 0.00 44.23 4.35
462 463 0.109132 CGGCATTGTCTTTGGCCTTC 60.109 55.000 3.32 0.00 44.23 3.46
463 464 1.260544 GGCATTGTCTTTGGCCTTCT 58.739 50.000 3.32 0.00 43.09 2.85
464 465 1.203287 GGCATTGTCTTTGGCCTTCTC 59.797 52.381 3.32 0.00 43.09 2.87
465 466 1.203287 GCATTGTCTTTGGCCTTCTCC 59.797 52.381 3.32 0.00 0.00 3.71
466 467 2.517959 CATTGTCTTTGGCCTTCTCCA 58.482 47.619 3.32 0.00 0.00 3.86
467 468 2.978156 TTGTCTTTGGCCTTCTCCAT 57.022 45.000 3.32 0.00 35.77 3.41
468 469 2.496899 TGTCTTTGGCCTTCTCCATC 57.503 50.000 3.32 0.00 35.77 3.51
469 470 1.704628 TGTCTTTGGCCTTCTCCATCA 59.295 47.619 3.32 0.00 35.77 3.07
470 471 2.290514 TGTCTTTGGCCTTCTCCATCAG 60.291 50.000 3.32 0.00 35.77 2.90
471 472 2.026822 GTCTTTGGCCTTCTCCATCAGA 60.027 50.000 3.32 0.00 35.77 3.27
472 473 2.644299 TCTTTGGCCTTCTCCATCAGAA 59.356 45.455 3.32 0.00 38.95 3.02
479 480 2.775911 TTCTCCATCAGAAGCAGTGG 57.224 50.000 0.00 0.00 36.08 4.00
480 481 0.251354 TCTCCATCAGAAGCAGTGGC 59.749 55.000 0.00 0.00 41.61 5.01
499 500 1.009829 CGGAGCTACACCAGAATTGC 58.990 55.000 0.00 0.00 0.00 3.56
500 501 1.009829 GGAGCTACACCAGAATTGCG 58.990 55.000 0.00 0.00 0.00 4.85
501 502 1.405526 GGAGCTACACCAGAATTGCGA 60.406 52.381 0.00 0.00 0.00 5.10
502 503 2.346803 GAGCTACACCAGAATTGCGAA 58.653 47.619 0.00 0.00 0.00 4.70
503 504 2.742053 GAGCTACACCAGAATTGCGAAA 59.258 45.455 0.00 0.00 0.00 3.46
504 505 3.146066 AGCTACACCAGAATTGCGAAAA 58.854 40.909 0.00 0.00 0.00 2.29
505 506 3.568007 AGCTACACCAGAATTGCGAAAAA 59.432 39.130 0.00 0.00 0.00 1.94
506 507 3.668656 GCTACACCAGAATTGCGAAAAAC 59.331 43.478 0.00 0.00 0.00 2.43
507 508 4.556699 GCTACACCAGAATTGCGAAAAACT 60.557 41.667 0.00 0.00 0.00 2.66
508 509 5.334569 GCTACACCAGAATTGCGAAAAACTA 60.335 40.000 0.00 0.00 0.00 2.24
509 510 5.508200 ACACCAGAATTGCGAAAAACTAA 57.492 34.783 0.00 0.00 0.00 2.24
510 511 6.084326 ACACCAGAATTGCGAAAAACTAAT 57.916 33.333 0.00 0.00 0.00 1.73
511 512 6.512297 ACACCAGAATTGCGAAAAACTAATT 58.488 32.000 0.00 0.00 0.00 1.40
512 513 6.983890 ACACCAGAATTGCGAAAAACTAATTT 59.016 30.769 0.00 0.00 0.00 1.82
513 514 7.494298 ACACCAGAATTGCGAAAAACTAATTTT 59.506 29.630 0.00 0.00 43.85 1.82
514 515 7.793427 CACCAGAATTGCGAAAAACTAATTTTG 59.207 33.333 0.00 0.00 41.27 2.44
515 516 6.791775 CCAGAATTGCGAAAAACTAATTTTGC 59.208 34.615 5.29 5.29 45.77 3.68
516 517 7.307337 CCAGAATTGCGAAAAACTAATTTTGCT 60.307 33.333 11.91 0.00 45.76 3.91
517 518 8.063630 CAGAATTGCGAAAAACTAATTTTGCTT 58.936 29.630 11.91 1.33 45.76 3.91
518 519 8.275632 AGAATTGCGAAAAACTAATTTTGCTTC 58.724 29.630 11.91 8.77 45.76 3.86
519 520 5.898630 TGCGAAAAACTAATTTTGCTTCC 57.101 34.783 11.91 0.00 45.76 3.46
520 521 5.352284 TGCGAAAAACTAATTTTGCTTCCA 58.648 33.333 11.91 0.00 45.76 3.53
521 522 5.988561 TGCGAAAAACTAATTTTGCTTCCAT 59.011 32.000 11.91 0.00 45.76 3.41
522 523 6.481644 TGCGAAAAACTAATTTTGCTTCCATT 59.518 30.769 11.91 0.00 45.76 3.16
523 524 7.011857 TGCGAAAAACTAATTTTGCTTCCATTT 59.988 29.630 11.91 0.00 45.76 2.32
524 525 8.491950 GCGAAAAACTAATTTTGCTTCCATTTA 58.508 29.630 5.05 0.00 43.40 1.40
535 536 4.902443 GCTTCCATTTAAGCCCTCTAAC 57.098 45.455 0.00 0.00 44.98 2.34
536 537 4.527944 GCTTCCATTTAAGCCCTCTAACT 58.472 43.478 0.00 0.00 44.98 2.24
537 538 4.336713 GCTTCCATTTAAGCCCTCTAACTG 59.663 45.833 0.00 0.00 44.98 3.16
538 539 5.745227 CTTCCATTTAAGCCCTCTAACTGA 58.255 41.667 0.00 0.00 0.00 3.41
539 540 5.099042 TCCATTTAAGCCCTCTAACTGAC 57.901 43.478 0.00 0.00 0.00 3.51
540 541 3.871594 CCATTTAAGCCCTCTAACTGACG 59.128 47.826 0.00 0.00 0.00 4.35
541 542 2.667473 TTAAGCCCTCTAACTGACGC 57.333 50.000 0.00 0.00 0.00 5.19
542 543 0.454600 TAAGCCCTCTAACTGACGCG 59.545 55.000 3.53 3.53 0.00 6.01
543 544 1.248785 AAGCCCTCTAACTGACGCGA 61.249 55.000 15.93 0.00 0.00 5.87
544 545 1.214589 GCCCTCTAACTGACGCGAA 59.785 57.895 15.93 0.00 0.00 4.70
545 546 1.077089 GCCCTCTAACTGACGCGAAC 61.077 60.000 15.93 7.16 0.00 3.95
546 547 0.458025 CCCTCTAACTGACGCGAACC 60.458 60.000 15.93 1.42 0.00 3.62
547 548 0.797249 CCTCTAACTGACGCGAACCG 60.797 60.000 15.93 5.49 44.21 4.44
548 549 0.797249 CTCTAACTGACGCGAACCGG 60.797 60.000 15.93 0.00 42.52 5.28
549 550 1.210931 CTAACTGACGCGAACCGGA 59.789 57.895 15.93 0.00 42.52 5.14
550 551 1.069378 CTAACTGACGCGAACCGGAC 61.069 60.000 15.93 0.00 42.52 4.79
551 552 2.476534 TAACTGACGCGAACCGGACC 62.477 60.000 15.93 0.00 42.52 4.46
563 564 2.738480 CGGACCGGACCACTTGAA 59.262 61.111 22.85 0.00 0.00 2.69
564 565 1.295423 CGGACCGGACCACTTGAAT 59.705 57.895 22.85 0.00 0.00 2.57
565 566 0.739813 CGGACCGGACCACTTGAATC 60.740 60.000 22.85 0.00 0.00 2.52
566 567 0.613777 GGACCGGACCACTTGAATCT 59.386 55.000 18.62 0.00 0.00 2.40
567 568 1.003233 GGACCGGACCACTTGAATCTT 59.997 52.381 18.62 0.00 0.00 2.40
568 569 2.076863 GACCGGACCACTTGAATCTTG 58.923 52.381 9.46 0.00 0.00 3.02
569 570 1.697432 ACCGGACCACTTGAATCTTGA 59.303 47.619 9.46 0.00 0.00 3.02
570 571 2.076863 CCGGACCACTTGAATCTTGAC 58.923 52.381 0.00 0.00 0.00 3.18
571 572 2.289694 CCGGACCACTTGAATCTTGACT 60.290 50.000 0.00 0.00 0.00 3.41
572 573 2.996621 CGGACCACTTGAATCTTGACTC 59.003 50.000 0.00 0.00 0.00 3.36
573 574 3.554960 CGGACCACTTGAATCTTGACTCA 60.555 47.826 0.00 0.00 0.00 3.41
574 575 3.748568 GGACCACTTGAATCTTGACTCAC 59.251 47.826 0.00 0.00 0.00 3.51
575 576 4.380531 GACCACTTGAATCTTGACTCACA 58.619 43.478 0.00 0.00 0.00 3.58
576 577 4.130118 ACCACTTGAATCTTGACTCACAC 58.870 43.478 0.00 0.00 0.00 3.82
577 578 4.129380 CCACTTGAATCTTGACTCACACA 58.871 43.478 0.00 0.00 0.00 3.72
578 579 4.576053 CCACTTGAATCTTGACTCACACAA 59.424 41.667 0.00 0.00 0.00 3.33
579 580 5.504665 CCACTTGAATCTTGACTCACACAAC 60.505 44.000 0.00 0.00 0.00 3.32
580 581 5.065090 CACTTGAATCTTGACTCACACAACA 59.935 40.000 0.00 0.00 0.00 3.33
581 582 5.824624 ACTTGAATCTTGACTCACACAACAT 59.175 36.000 0.00 0.00 0.00 2.71
582 583 5.678132 TGAATCTTGACTCACACAACATG 57.322 39.130 0.00 0.00 0.00 3.21
583 584 5.125356 TGAATCTTGACTCACACAACATGT 58.875 37.500 0.00 0.00 44.81 3.21
612 613 4.007282 CATGTTCTTCATGTGTTAGCCG 57.993 45.455 0.00 0.00 46.18 5.52
613 614 1.804151 TGTTCTTCATGTGTTAGCCGC 59.196 47.619 0.00 0.00 0.00 6.53
614 615 1.804151 GTTCTTCATGTGTTAGCCGCA 59.196 47.619 0.00 0.00 38.10 5.69
615 616 1.725641 TCTTCATGTGTTAGCCGCAG 58.274 50.000 0.00 0.00 36.91 5.18
647 648 6.600427 GCATGGGTCATCATATACATTGATCA 59.400 38.462 0.00 0.00 31.50 2.92
683 684 4.486125 TTGATTCATCAGACATTCCGGA 57.514 40.909 0.00 0.00 38.19 5.14
692 693 2.160417 CAGACATTCCGGAGAACAAAGC 59.840 50.000 3.34 0.00 33.97 3.51
736 737 6.103997 CCATTCAAATTTTGGACCATCTCAG 58.896 40.000 9.18 0.00 31.94 3.35
748 750 6.542821 TGGACCATCTCAGAGTTGTATTTTT 58.457 36.000 7.57 0.00 0.00 1.94
780 782 6.989169 ACAAGCTGTATTTATTGTGGCAAAAA 59.011 30.769 0.00 0.00 34.71 1.94
786 788 0.952280 TATTGTGGCAAAAACCGCGA 59.048 45.000 8.23 0.00 43.47 5.87
806 808 4.561213 GCGAAAGGTGCACAATTTATTACC 59.439 41.667 20.43 5.88 0.00 2.85
826 828 3.014807 ACCCCCTCGGTCCCATAATATAT 59.985 47.826 0.00 0.00 43.58 0.86
827 829 4.235873 ACCCCCTCGGTCCCATAATATATA 59.764 45.833 0.00 0.00 43.58 0.86
833 835 6.323996 CCTCGGTCCCATAATATATAAGAGCA 59.676 42.308 0.00 0.00 0.00 4.26
868 872 4.620086 TTGGGACTGAGGGAGTAGATTA 57.380 45.455 0.00 0.00 33.83 1.75
891 895 1.622607 TTACTGGAGGCCCATGACCG 61.623 60.000 0.00 0.00 42.59 4.79
914 919 1.534729 GTCAACGAGAAATGGGCCTT 58.465 50.000 4.53 0.00 0.00 4.35
930 935 1.002544 GCCTTAGTGCTAGGCCCATAG 59.997 57.143 0.00 0.00 42.52 2.23
932 937 1.974236 CTTAGTGCTAGGCCCATAGCT 59.026 52.381 21.08 7.94 46.81 3.32
946 951 0.108615 ATAGCTGGCGCGATATGGAC 60.109 55.000 12.10 0.00 42.32 4.02
1032 1037 4.308458 TGCAACCACTACGCCGCT 62.308 61.111 0.00 0.00 0.00 5.52
1045 1050 2.600731 CCGCTCTCCTCTCCTCCT 59.399 66.667 0.00 0.00 0.00 3.69
1046 1051 1.528309 CCGCTCTCCTCTCCTCCTC 60.528 68.421 0.00 0.00 0.00 3.71
1047 1052 1.528309 CGCTCTCCTCTCCTCCTCC 60.528 68.421 0.00 0.00 0.00 4.30
1048 1053 1.930520 GCTCTCCTCTCCTCCTCCT 59.069 63.158 0.00 0.00 0.00 3.69
1049 1054 0.178990 GCTCTCCTCTCCTCCTCCTC 60.179 65.000 0.00 0.00 0.00 3.71
1050 1055 0.478507 CTCTCCTCTCCTCCTCCTCC 59.521 65.000 0.00 0.00 0.00 4.30
1051 1056 1.150536 CTCCTCTCCTCCTCCTCCG 59.849 68.421 0.00 0.00 0.00 4.63
1052 1057 2.520741 CCTCTCCTCCTCCTCCGC 60.521 72.222 0.00 0.00 0.00 5.54
1053 1058 2.520741 CTCTCCTCCTCCTCCGCC 60.521 72.222 0.00 0.00 0.00 6.13
1054 1059 4.507916 TCTCCTCCTCCTCCGCCG 62.508 72.222 0.00 0.00 0.00 6.46
1593 1607 2.870411 GAGCCCGTTGGTTGATATGTAC 59.130 50.000 0.00 0.00 0.00 2.90
1671 1685 7.290842 GCAAGAATGTGGTGATGTATAATACG 58.709 38.462 0.00 0.00 0.00 3.06
1683 1697 5.970317 TGTATAATACGATGATCACGGGT 57.030 39.130 17.75 10.32 34.93 5.28
1830 1844 2.359900 GATGTTTTCAGGCGGATGAGT 58.640 47.619 0.00 0.00 0.00 3.41
1833 1847 0.036732 TTTTCAGGCGGATGAGTGCT 59.963 50.000 0.00 0.00 0.00 4.40
1842 1856 0.107945 GGATGAGTGCTGAGGGTGTC 60.108 60.000 0.00 0.00 0.00 3.67
2040 2054 2.151202 GCCGTTTTCAGAAGGATGACA 58.849 47.619 0.00 0.00 0.00 3.58
2064 2078 4.768448 TGCAAAAACATCATCTCATGGACT 59.232 37.500 0.00 0.00 0.00 3.85
2073 2087 4.386711 TCATCTCATGGACTGCAATGATC 58.613 43.478 0.00 0.00 32.56 2.92
2676 2690 0.391597 CTGATGCAATTGGATGGGCC 59.608 55.000 17.95 3.34 37.10 5.80
2836 2850 1.685820 GAGGTTGCCCAGCTTAGGT 59.314 57.895 1.58 0.00 31.44 3.08
2986 3000 2.935201 CAGTGGCTCAACTCTAAGATGC 59.065 50.000 0.00 0.00 0.00 3.91
3514 3530 9.136323 AGTTCTGGAAGATTGTTTTGATTAACT 57.864 29.630 0.00 0.00 46.36 2.24
3689 3708 6.435430 TTTGTCATTCTGTGCGCTAATTAT 57.565 33.333 9.73 0.00 0.00 1.28
4002 4023 2.365293 AGCAAAGGGAACAAAGCGATTT 59.635 40.909 0.00 0.00 0.00 2.17
4009 4030 3.486875 GGGAACAAAGCGATTTATCACCG 60.487 47.826 0.00 0.00 0.00 4.94
4015 4036 0.935196 GCGATTTATCACCGTCCACC 59.065 55.000 0.00 0.00 0.00 4.61
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
13 14 2.502295 CAAGGAGGATATGCAGAAGGC 58.498 52.381 0.00 0.00 45.13 4.35
14 15 2.158711 TGCAAGGAGGATATGCAGAAGG 60.159 50.000 0.00 0.00 44.52 3.46
15 16 3.204306 TGCAAGGAGGATATGCAGAAG 57.796 47.619 0.00 0.00 44.52 2.85
19 20 2.173143 TGATGTGCAAGGAGGATATGCA 59.827 45.455 0.00 0.00 46.97 3.96
20 21 2.854963 TGATGTGCAAGGAGGATATGC 58.145 47.619 0.00 0.00 40.45 3.14
21 22 4.885907 ACTTTGATGTGCAAGGAGGATATG 59.114 41.667 0.00 0.00 37.87 1.78
22 23 5.121380 ACTTTGATGTGCAAGGAGGATAT 57.879 39.130 0.00 0.00 37.87 1.63
23 24 4.574674 ACTTTGATGTGCAAGGAGGATA 57.425 40.909 0.00 0.00 37.87 2.59
24 25 3.446442 ACTTTGATGTGCAAGGAGGAT 57.554 42.857 0.00 0.00 37.87 3.24
25 26 2.957402 ACTTTGATGTGCAAGGAGGA 57.043 45.000 0.00 0.00 37.87 3.71
26 27 2.886523 TGAACTTTGATGTGCAAGGAGG 59.113 45.455 0.00 0.00 37.87 4.30
27 28 3.057736 CCTGAACTTTGATGTGCAAGGAG 60.058 47.826 0.00 0.00 37.87 3.69
28 29 2.886523 CCTGAACTTTGATGTGCAAGGA 59.113 45.455 0.00 0.00 37.87 3.36
29 30 2.624838 ACCTGAACTTTGATGTGCAAGG 59.375 45.455 0.00 0.00 37.87 3.61
30 31 3.551454 CCACCTGAACTTTGATGTGCAAG 60.551 47.826 0.00 0.00 37.87 4.01
31 32 2.361757 CCACCTGAACTTTGATGTGCAA 59.638 45.455 0.00 0.00 33.88 4.08
32 33 1.955778 CCACCTGAACTTTGATGTGCA 59.044 47.619 0.00 0.00 0.00 4.57
33 34 1.956477 ACCACCTGAACTTTGATGTGC 59.044 47.619 0.00 0.00 0.00 4.57
34 35 3.480470 AGACCACCTGAACTTTGATGTG 58.520 45.455 0.00 0.00 0.00 3.21
35 36 3.864789 AGACCACCTGAACTTTGATGT 57.135 42.857 0.00 0.00 0.00 3.06
36 37 4.899502 ACTAGACCACCTGAACTTTGATG 58.100 43.478 0.00 0.00 0.00 3.07
37 38 5.552178 GAACTAGACCACCTGAACTTTGAT 58.448 41.667 0.00 0.00 0.00 2.57
38 39 4.500887 CGAACTAGACCACCTGAACTTTGA 60.501 45.833 0.00 0.00 0.00 2.69
39 40 3.741344 CGAACTAGACCACCTGAACTTTG 59.259 47.826 0.00 0.00 0.00 2.77
40 41 3.640029 TCGAACTAGACCACCTGAACTTT 59.360 43.478 0.00 0.00 0.00 2.66
41 42 3.005578 GTCGAACTAGACCACCTGAACTT 59.994 47.826 0.00 0.00 35.22 2.66
42 43 2.557490 GTCGAACTAGACCACCTGAACT 59.443 50.000 0.00 0.00 35.22 3.01
43 44 2.943993 GTCGAACTAGACCACCTGAAC 58.056 52.381 0.00 0.00 35.22 3.18
52 53 1.653151 GCCAATGGGTCGAACTAGAC 58.347 55.000 0.00 0.00 40.25 2.59
53 54 0.539986 GGCCAATGGGTCGAACTAGA 59.460 55.000 0.00 0.00 36.17 2.43
54 55 0.463833 GGGCCAATGGGTCGAACTAG 60.464 60.000 4.39 0.00 40.80 2.57
55 56 1.605453 GGGCCAATGGGTCGAACTA 59.395 57.895 4.39 0.00 40.80 2.24
56 57 2.355115 GGGCCAATGGGTCGAACT 59.645 61.111 4.39 0.00 40.80 3.01
57 58 2.754254 GGGGCCAATGGGTCGAAC 60.754 66.667 4.39 0.00 40.80 3.95
58 59 2.161713 ATTGGGGCCAATGGGTCGAA 62.162 55.000 4.39 0.00 44.05 3.71
59 60 2.621445 ATTGGGGCCAATGGGTCGA 61.621 57.895 4.39 0.00 44.05 4.20
60 61 2.043046 ATTGGGGCCAATGGGTCG 60.043 61.111 4.39 0.00 44.05 4.79
70 71 1.339644 TAGGTACGGTCCATTGGGGC 61.340 60.000 2.09 0.00 38.40 5.80
71 72 0.466963 GTAGGTACGGTCCATTGGGG 59.533 60.000 2.09 0.00 38.37 4.96
72 73 1.196911 TGTAGGTACGGTCCATTGGG 58.803 55.000 2.09 0.00 0.00 4.12
73 74 4.884668 ATATGTAGGTACGGTCCATTGG 57.115 45.455 0.00 0.00 0.00 3.16
74 75 5.607477 ACAATATGTAGGTACGGTCCATTG 58.393 41.667 1.31 4.48 0.00 2.82
75 76 5.881923 ACAATATGTAGGTACGGTCCATT 57.118 39.130 1.31 0.00 0.00 3.16
76 77 5.881923 AACAATATGTAGGTACGGTCCAT 57.118 39.130 1.31 0.00 0.00 3.41
77 78 5.893255 AGTAACAATATGTAGGTACGGTCCA 59.107 40.000 1.31 0.00 0.00 4.02
78 79 6.396829 AGTAACAATATGTAGGTACGGTCC 57.603 41.667 0.00 0.00 0.00 4.46
89 90 9.448587 ACCCTTCTCCTTATAGTAACAATATGT 57.551 33.333 0.00 0.00 0.00 2.29
93 94 8.712103 GGTTACCCTTCTCCTTATAGTAACAAT 58.288 37.037 11.05 0.00 39.70 2.71
94 95 7.902941 AGGTTACCCTTCTCCTTATAGTAACAA 59.097 37.037 0.00 0.00 38.13 2.83
95 96 7.343833 CAGGTTACCCTTCTCCTTATAGTAACA 59.656 40.741 0.00 0.00 39.89 2.41
96 97 7.201983 CCAGGTTACCCTTCTCCTTATAGTAAC 60.202 44.444 0.00 0.00 39.89 2.50
97 98 6.842807 CCAGGTTACCCTTCTCCTTATAGTAA 59.157 42.308 0.00 0.00 39.89 2.24
98 99 6.068021 ACCAGGTTACCCTTCTCCTTATAGTA 60.068 42.308 0.00 0.00 39.89 1.82
99 100 5.217400 CCAGGTTACCCTTCTCCTTATAGT 58.783 45.833 0.00 0.00 39.89 2.12
100 101 5.070580 CACCAGGTTACCCTTCTCCTTATAG 59.929 48.000 0.00 0.00 39.89 1.31
101 102 4.966805 CACCAGGTTACCCTTCTCCTTATA 59.033 45.833 0.00 0.00 39.89 0.98
102 103 3.780850 CACCAGGTTACCCTTCTCCTTAT 59.219 47.826 0.00 0.00 39.89 1.73
103 104 3.178865 CACCAGGTTACCCTTCTCCTTA 58.821 50.000 0.00 0.00 39.89 2.69
104 105 1.985895 CACCAGGTTACCCTTCTCCTT 59.014 52.381 0.00 0.00 39.89 3.36
105 106 1.657804 CACCAGGTTACCCTTCTCCT 58.342 55.000 0.00 0.00 39.89 3.69
106 107 0.618981 CCACCAGGTTACCCTTCTCC 59.381 60.000 0.00 0.00 39.89 3.71
107 108 0.035343 GCCACCAGGTTACCCTTCTC 60.035 60.000 0.00 0.00 39.89 2.87
108 109 1.498176 GGCCACCAGGTTACCCTTCT 61.498 60.000 0.00 0.00 39.89 2.85
109 110 1.001269 GGCCACCAGGTTACCCTTC 60.001 63.158 0.00 0.00 39.89 3.46
110 111 1.465387 AGGCCACCAGGTTACCCTT 60.465 57.895 5.01 0.00 39.89 3.95
111 112 2.210102 AGGCCACCAGGTTACCCT 59.790 61.111 5.01 0.87 44.02 4.34
112 113 1.785353 TTCAGGCCACCAGGTTACCC 61.785 60.000 5.01 0.00 37.19 3.69
113 114 0.111639 TTTCAGGCCACCAGGTTACC 59.888 55.000 5.01 0.00 37.19 2.85
114 115 1.989706 TTTTCAGGCCACCAGGTTAC 58.010 50.000 5.01 0.00 37.19 2.50
115 116 2.312390 GTTTTTCAGGCCACCAGGTTA 58.688 47.619 5.01 0.00 37.19 2.85
116 117 1.119684 GTTTTTCAGGCCACCAGGTT 58.880 50.000 5.01 0.00 37.19 3.50
117 118 0.759060 GGTTTTTCAGGCCACCAGGT 60.759 55.000 5.01 0.00 37.19 4.00
118 119 0.469892 AGGTTTTTCAGGCCACCAGG 60.470 55.000 5.01 0.00 38.23 4.45
119 120 0.675633 CAGGTTTTTCAGGCCACCAG 59.324 55.000 5.01 0.00 0.00 4.00
120 121 0.032615 ACAGGTTTTTCAGGCCACCA 60.033 50.000 5.01 0.00 0.00 4.17
121 122 1.611977 GTACAGGTTTTTCAGGCCACC 59.388 52.381 5.01 1.64 0.00 4.61
122 123 2.303175 TGTACAGGTTTTTCAGGCCAC 58.697 47.619 5.01 0.00 0.00 5.01
123 124 2.738587 TGTACAGGTTTTTCAGGCCA 57.261 45.000 5.01 0.00 0.00 5.36
124 125 4.038642 TGAATTGTACAGGTTTTTCAGGCC 59.961 41.667 0.00 0.00 0.00 5.19
125 126 5.195001 TGAATTGTACAGGTTTTTCAGGC 57.805 39.130 0.00 0.00 0.00 4.85
126 127 5.222631 GCTGAATTGTACAGGTTTTTCAGG 58.777 41.667 22.18 12.57 40.08 3.86
127 128 5.222631 GGCTGAATTGTACAGGTTTTTCAG 58.777 41.667 19.45 19.45 41.72 3.02
128 129 4.261405 CGGCTGAATTGTACAGGTTTTTCA 60.261 41.667 0.00 2.08 36.09 2.69
129 130 4.226761 CGGCTGAATTGTACAGGTTTTTC 58.773 43.478 0.00 0.00 36.09 2.29
130 131 3.005367 CCGGCTGAATTGTACAGGTTTTT 59.995 43.478 0.00 0.00 36.09 1.94
131 132 2.556622 CCGGCTGAATTGTACAGGTTTT 59.443 45.455 0.00 0.00 36.09 2.43
132 133 2.159382 CCGGCTGAATTGTACAGGTTT 58.841 47.619 0.00 0.00 36.09 3.27
133 134 1.613255 CCCGGCTGAATTGTACAGGTT 60.613 52.381 0.00 0.00 36.09 3.50
134 135 0.035439 CCCGGCTGAATTGTACAGGT 60.035 55.000 0.00 0.00 36.09 4.00
135 136 0.748005 CCCCGGCTGAATTGTACAGG 60.748 60.000 0.00 0.00 36.09 4.00
136 137 1.376609 GCCCCGGCTGAATTGTACAG 61.377 60.000 0.00 0.00 38.26 2.74
137 138 1.377987 GCCCCGGCTGAATTGTACA 60.378 57.895 0.00 0.00 38.26 2.90
138 139 0.963355 TTGCCCCGGCTGAATTGTAC 60.963 55.000 7.35 0.00 42.51 2.90
139 140 0.251386 TTTGCCCCGGCTGAATTGTA 60.251 50.000 7.35 0.00 42.51 2.41
140 141 1.118356 TTTTGCCCCGGCTGAATTGT 61.118 50.000 7.35 0.00 42.51 2.71
141 142 0.249955 ATTTTGCCCCGGCTGAATTG 59.750 50.000 7.35 0.00 42.51 2.32
142 143 0.536724 GATTTTGCCCCGGCTGAATT 59.463 50.000 7.35 0.00 42.51 2.17
143 144 1.666209 CGATTTTGCCCCGGCTGAAT 61.666 55.000 7.35 7.02 42.51 2.57
144 145 2.339556 CGATTTTGCCCCGGCTGAA 61.340 57.895 7.35 2.24 42.51 3.02
145 146 2.749839 CGATTTTGCCCCGGCTGA 60.750 61.111 7.35 0.00 42.51 4.26
146 147 2.542211 GAACGATTTTGCCCCGGCTG 62.542 60.000 7.35 0.00 42.51 4.85
147 148 2.282887 AACGATTTTGCCCCGGCT 60.283 55.556 7.35 0.00 42.51 5.52
148 149 2.180769 GAACGATTTTGCCCCGGC 59.819 61.111 0.00 0.00 42.35 6.13
149 150 2.036006 TCGAACGATTTTGCCCCGG 61.036 57.895 0.00 0.00 0.00 5.73
150 151 1.133869 GTCGAACGATTTTGCCCCG 59.866 57.895 0.00 0.00 0.00 5.73
151 152 1.504900 GGTCGAACGATTTTGCCCC 59.495 57.895 0.00 0.00 0.00 5.80
152 153 1.504900 GGGTCGAACGATTTTGCCC 59.495 57.895 0.00 2.36 0.00 5.36
153 154 1.133869 CGGGTCGAACGATTTTGCC 59.866 57.895 4.92 0.00 0.00 4.52
154 155 2.155665 TCGGGTCGAACGATTTTGC 58.844 52.632 9.13 0.00 35.12 3.68
160 161 4.137872 GGCCATCGGGTCGAACGA 62.138 66.667 14.64 14.64 45.19 3.85
171 172 4.545706 TGATGCGGTCCGGCCATC 62.546 66.667 19.39 19.39 36.97 3.51
172 173 4.856801 GTGATGCGGTCCGGCCAT 62.857 66.667 14.38 8.80 36.97 4.40
176 177 2.358125 TTGTGTGATGCGGTCCGG 60.358 61.111 14.38 0.00 0.00 5.14
177 178 2.860293 GTTGTGTGATGCGGTCCG 59.140 61.111 6.99 6.99 0.00 4.79
178 179 0.668096 TACGTTGTGTGATGCGGTCC 60.668 55.000 0.00 0.00 0.00 4.46
179 180 0.437295 GTACGTTGTGTGATGCGGTC 59.563 55.000 0.00 0.00 0.00 4.79
180 181 0.249531 TGTACGTTGTGTGATGCGGT 60.250 50.000 0.00 0.00 0.00 5.68
181 182 0.162933 GTGTACGTTGTGTGATGCGG 59.837 55.000 0.00 0.00 0.00 5.69
182 183 0.855995 TGTGTACGTTGTGTGATGCG 59.144 50.000 0.00 0.00 0.00 4.73
183 184 4.655440 TTATGTGTACGTTGTGTGATGC 57.345 40.909 0.00 0.00 0.00 3.91
184 185 7.425309 GCTAAATTATGTGTACGTTGTGTGATG 59.575 37.037 0.00 0.00 0.00 3.07
185 186 7.413657 GGCTAAATTATGTGTACGTTGTGTGAT 60.414 37.037 0.00 0.00 0.00 3.06
186 187 6.128499 GGCTAAATTATGTGTACGTTGTGTGA 60.128 38.462 0.00 0.00 0.00 3.58
187 188 6.019152 GGCTAAATTATGTGTACGTTGTGTG 58.981 40.000 0.00 0.00 0.00 3.82
188 189 5.701750 TGGCTAAATTATGTGTACGTTGTGT 59.298 36.000 0.00 0.00 0.00 3.72
189 190 6.019152 GTGGCTAAATTATGTGTACGTTGTG 58.981 40.000 0.00 0.00 0.00 3.33
190 191 5.122711 GGTGGCTAAATTATGTGTACGTTGT 59.877 40.000 0.00 0.00 0.00 3.32
191 192 5.353123 AGGTGGCTAAATTATGTGTACGTTG 59.647 40.000 0.00 0.00 0.00 4.10
192 193 5.493809 AGGTGGCTAAATTATGTGTACGTT 58.506 37.500 0.00 0.00 0.00 3.99
193 194 5.093849 AGGTGGCTAAATTATGTGTACGT 57.906 39.130 0.00 0.00 0.00 3.57
194 195 4.510340 GGAGGTGGCTAAATTATGTGTACG 59.490 45.833 0.00 0.00 0.00 3.67
195 196 5.296035 GTGGAGGTGGCTAAATTATGTGTAC 59.704 44.000 0.00 0.00 0.00 2.90
196 197 5.433526 GTGGAGGTGGCTAAATTATGTGTA 58.566 41.667 0.00 0.00 0.00 2.90
197 198 4.270008 GTGGAGGTGGCTAAATTATGTGT 58.730 43.478 0.00 0.00 0.00 3.72
198 199 3.632145 GGTGGAGGTGGCTAAATTATGTG 59.368 47.826 0.00 0.00 0.00 3.21
199 200 3.527665 AGGTGGAGGTGGCTAAATTATGT 59.472 43.478 0.00 0.00 0.00 2.29
200 201 4.170468 AGGTGGAGGTGGCTAAATTATG 57.830 45.455 0.00 0.00 0.00 1.90
201 202 5.987019 TTAGGTGGAGGTGGCTAAATTAT 57.013 39.130 0.00 0.00 0.00 1.28
202 203 5.489637 TCTTTAGGTGGAGGTGGCTAAATTA 59.510 40.000 0.00 0.00 0.00 1.40
203 204 4.291249 TCTTTAGGTGGAGGTGGCTAAATT 59.709 41.667 0.00 0.00 0.00 1.82
204 205 3.850173 TCTTTAGGTGGAGGTGGCTAAAT 59.150 43.478 0.00 0.00 0.00 1.40
205 206 3.253220 TCTTTAGGTGGAGGTGGCTAAA 58.747 45.455 0.00 0.00 0.00 1.85
206 207 2.838202 CTCTTTAGGTGGAGGTGGCTAA 59.162 50.000 0.00 0.00 0.00 3.09
207 208 2.225547 ACTCTTTAGGTGGAGGTGGCTA 60.226 50.000 0.00 0.00 34.22 3.93
208 209 1.280457 CTCTTTAGGTGGAGGTGGCT 58.720 55.000 0.00 0.00 0.00 4.75
209 210 0.984995 ACTCTTTAGGTGGAGGTGGC 59.015 55.000 0.00 0.00 34.22 5.01
210 211 2.353803 CGAACTCTTTAGGTGGAGGTGG 60.354 54.545 0.00 0.00 34.22 4.61
211 212 2.561419 TCGAACTCTTTAGGTGGAGGTG 59.439 50.000 0.00 0.00 34.22 4.00
212 213 2.826725 CTCGAACTCTTTAGGTGGAGGT 59.173 50.000 0.00 0.00 40.55 3.85
213 214 3.090037 TCTCGAACTCTTTAGGTGGAGG 58.910 50.000 3.14 0.00 43.46 4.30
214 215 4.677584 CATCTCGAACTCTTTAGGTGGAG 58.322 47.826 0.00 0.00 44.35 3.86
215 216 3.119101 GCATCTCGAACTCTTTAGGTGGA 60.119 47.826 0.00 0.00 0.00 4.02
216 217 3.190874 GCATCTCGAACTCTTTAGGTGG 58.809 50.000 0.00 0.00 0.00 4.61
217 218 3.849911 TGCATCTCGAACTCTTTAGGTG 58.150 45.455 0.00 0.00 0.00 4.00
218 219 4.499183 CTTGCATCTCGAACTCTTTAGGT 58.501 43.478 0.00 0.00 0.00 3.08
219 220 3.868077 CCTTGCATCTCGAACTCTTTAGG 59.132 47.826 0.00 0.00 0.00 2.69
220 221 3.308323 GCCTTGCATCTCGAACTCTTTAG 59.692 47.826 0.00 0.00 0.00 1.85
221 222 3.262420 GCCTTGCATCTCGAACTCTTTA 58.738 45.455 0.00 0.00 0.00 1.85
222 223 2.079925 GCCTTGCATCTCGAACTCTTT 58.920 47.619 0.00 0.00 0.00 2.52
223 224 1.002430 TGCCTTGCATCTCGAACTCTT 59.998 47.619 0.00 0.00 31.71 2.85
224 225 0.610174 TGCCTTGCATCTCGAACTCT 59.390 50.000 0.00 0.00 31.71 3.24
225 226 1.129437 GTTGCCTTGCATCTCGAACTC 59.871 52.381 0.00 0.00 38.76 3.01
226 227 1.160137 GTTGCCTTGCATCTCGAACT 58.840 50.000 0.00 0.00 38.76 3.01
227 228 0.169009 GGTTGCCTTGCATCTCGAAC 59.831 55.000 0.00 0.00 38.76 3.95
228 229 1.298157 CGGTTGCCTTGCATCTCGAA 61.298 55.000 0.00 0.00 38.76 3.71
229 230 1.741401 CGGTTGCCTTGCATCTCGA 60.741 57.895 0.00 0.00 38.76 4.04
230 231 1.577328 AACGGTTGCCTTGCATCTCG 61.577 55.000 0.00 0.00 38.76 4.04
231 232 0.109597 CAACGGTTGCCTTGCATCTC 60.110 55.000 8.09 0.00 38.76 2.75
232 233 1.526575 CCAACGGTTGCCTTGCATCT 61.527 55.000 15.31 0.00 38.76 2.90
233 234 1.080569 CCAACGGTTGCCTTGCATC 60.081 57.895 15.31 0.00 38.76 3.91
234 235 1.805428 GACCAACGGTTGCCTTGCAT 61.805 55.000 15.31 0.00 38.76 3.96
235 236 2.441164 ACCAACGGTTGCCTTGCA 60.441 55.556 15.31 0.00 36.47 4.08
236 237 1.805428 ATGACCAACGGTTGCCTTGC 61.805 55.000 15.31 3.15 35.25 4.01
237 238 0.240945 GATGACCAACGGTTGCCTTG 59.759 55.000 15.31 4.48 35.25 3.61
238 239 0.179004 TGATGACCAACGGTTGCCTT 60.179 50.000 15.31 7.33 35.25 4.35
239 240 0.606401 CTGATGACCAACGGTTGCCT 60.606 55.000 15.31 2.28 35.25 4.75
240 241 1.586154 CCTGATGACCAACGGTTGCC 61.586 60.000 15.31 9.48 35.25 4.52
241 242 1.586154 CCCTGATGACCAACGGTTGC 61.586 60.000 15.31 3.60 35.25 4.17
242 243 1.586154 GCCCTGATGACCAACGGTTG 61.586 60.000 13.86 13.86 35.25 3.77
243 244 1.303317 GCCCTGATGACCAACGGTT 60.303 57.895 0.00 0.00 35.25 4.44
244 245 2.351276 GCCCTGATGACCAACGGT 59.649 61.111 0.00 0.00 39.44 4.83
245 246 2.819595 CGCCCTGATGACCAACGG 60.820 66.667 0.00 0.00 0.00 4.44
246 247 3.499737 GCGCCCTGATGACCAACG 61.500 66.667 0.00 0.00 0.00 4.10
247 248 2.045926 AGCGCCCTGATGACCAAC 60.046 61.111 2.29 0.00 0.00 3.77
248 249 2.046023 CAGCGCCCTGATGACCAA 60.046 61.111 2.29 0.00 41.77 3.67
249 250 4.100084 CCAGCGCCCTGATGACCA 62.100 66.667 2.29 0.00 41.77 4.02
250 251 2.615227 ATTCCAGCGCCCTGATGACC 62.615 60.000 2.29 0.00 41.77 4.02
251 252 0.106708 TATTCCAGCGCCCTGATGAC 59.893 55.000 2.29 0.00 41.77 3.06
252 253 1.059098 ATATTCCAGCGCCCTGATGA 58.941 50.000 2.29 0.00 41.77 2.92
253 254 1.162698 CATATTCCAGCGCCCTGATG 58.837 55.000 2.29 0.00 41.77 3.07
254 255 1.059098 TCATATTCCAGCGCCCTGAT 58.941 50.000 2.29 0.00 41.77 2.90
255 256 1.002430 GATCATATTCCAGCGCCCTGA 59.998 52.381 2.29 0.00 41.77 3.86
256 257 1.271001 TGATCATATTCCAGCGCCCTG 60.271 52.381 2.29 0.00 38.85 4.45
257 258 1.059098 TGATCATATTCCAGCGCCCT 58.941 50.000 2.29 0.00 0.00 5.19
258 259 1.160137 GTGATCATATTCCAGCGCCC 58.840 55.000 2.29 0.00 0.00 6.13
259 260 1.160137 GGTGATCATATTCCAGCGCC 58.840 55.000 2.29 0.00 0.00 6.53
260 261 1.802960 CTGGTGATCATATTCCAGCGC 59.197 52.381 15.05 0.00 40.43 5.92
261 262 3.244009 ACTCTGGTGATCATATTCCAGCG 60.244 47.826 20.26 17.64 44.76 5.18
262 263 4.348863 ACTCTGGTGATCATATTCCAGC 57.651 45.455 20.26 0.00 44.76 4.85
263 264 6.572119 GCTCTACTCTGGTGATCATATTCCAG 60.572 46.154 19.39 19.39 46.00 3.86
264 265 5.244851 GCTCTACTCTGGTGATCATATTCCA 59.755 44.000 0.00 0.00 0.00 3.53
265 266 5.244851 TGCTCTACTCTGGTGATCATATTCC 59.755 44.000 0.00 0.00 0.00 3.01
266 267 6.155827 GTGCTCTACTCTGGTGATCATATTC 58.844 44.000 0.00 0.00 0.00 1.75
267 268 5.278709 CGTGCTCTACTCTGGTGATCATATT 60.279 44.000 0.00 0.00 0.00 1.28
268 269 4.217334 CGTGCTCTACTCTGGTGATCATAT 59.783 45.833 0.00 0.00 0.00 1.78
269 270 3.565902 CGTGCTCTACTCTGGTGATCATA 59.434 47.826 0.00 0.00 0.00 2.15
270 271 2.360483 CGTGCTCTACTCTGGTGATCAT 59.640 50.000 0.00 0.00 0.00 2.45
271 272 1.745653 CGTGCTCTACTCTGGTGATCA 59.254 52.381 0.00 0.00 0.00 2.92
272 273 1.535015 GCGTGCTCTACTCTGGTGATC 60.535 57.143 0.00 0.00 0.00 2.92
273 274 0.457851 GCGTGCTCTACTCTGGTGAT 59.542 55.000 0.00 0.00 0.00 3.06
274 275 1.595993 GGCGTGCTCTACTCTGGTGA 61.596 60.000 0.00 0.00 0.00 4.02
275 276 1.153745 GGCGTGCTCTACTCTGGTG 60.154 63.158 0.00 0.00 0.00 4.17
276 277 2.701780 CGGCGTGCTCTACTCTGGT 61.702 63.158 0.00 0.00 0.00 4.00
277 278 2.103143 CGGCGTGCTCTACTCTGG 59.897 66.667 0.00 0.00 0.00 3.86
278 279 1.226435 GTCGGCGTGCTCTACTCTG 60.226 63.158 6.85 0.00 0.00 3.35
279 280 1.674651 TGTCGGCGTGCTCTACTCT 60.675 57.895 6.85 0.00 0.00 3.24
280 281 1.514443 GTGTCGGCGTGCTCTACTC 60.514 63.158 6.85 0.00 0.00 2.59
281 282 2.567049 GTGTCGGCGTGCTCTACT 59.433 61.111 6.85 0.00 0.00 2.57
282 283 2.874780 CGTGTCGGCGTGCTCTAC 60.875 66.667 6.85 0.00 0.00 2.59
283 284 4.771356 GCGTGTCGGCGTGCTCTA 62.771 66.667 6.85 0.00 0.00 2.43
292 293 4.619227 ACAGGGGTTGCGTGTCGG 62.619 66.667 0.00 0.00 0.00 4.79
293 294 2.590575 AACAGGGGTTGCGTGTCG 60.591 61.111 0.00 0.00 35.46 4.35
294 295 3.030652 CAACAGGGGTTGCGTGTC 58.969 61.111 0.00 0.00 46.98 3.67
302 303 2.640473 TGGAGAAACCAACAGGGGT 58.360 52.632 0.00 0.00 46.75 4.95
311 312 1.172812 GGCTGTGTGGTGGAGAAACC 61.173 60.000 0.00 0.00 40.94 3.27
312 313 1.172812 GGGCTGTGTGGTGGAGAAAC 61.173 60.000 0.00 0.00 0.00 2.78
313 314 1.150536 GGGCTGTGTGGTGGAGAAA 59.849 57.895 0.00 0.00 0.00 2.52
314 315 1.352622 AAGGGCTGTGTGGTGGAGAA 61.353 55.000 0.00 0.00 0.00 2.87
315 316 1.768684 GAAGGGCTGTGTGGTGGAGA 61.769 60.000 0.00 0.00 0.00 3.71
316 317 1.302832 GAAGGGCTGTGTGGTGGAG 60.303 63.158 0.00 0.00 0.00 3.86
317 318 1.768684 GAGAAGGGCTGTGTGGTGGA 61.769 60.000 0.00 0.00 0.00 4.02
318 319 1.302832 GAGAAGGGCTGTGTGGTGG 60.303 63.158 0.00 0.00 0.00 4.61
319 320 0.321122 GAGAGAAGGGCTGTGTGGTG 60.321 60.000 0.00 0.00 0.00 4.17
320 321 1.484444 GGAGAGAAGGGCTGTGTGGT 61.484 60.000 0.00 0.00 0.00 4.16
321 322 1.298014 GGAGAGAAGGGCTGTGTGG 59.702 63.158 0.00 0.00 0.00 4.17
322 323 0.321122 GTGGAGAGAAGGGCTGTGTG 60.321 60.000 0.00 0.00 0.00 3.82
323 324 1.821061 CGTGGAGAGAAGGGCTGTGT 61.821 60.000 0.00 0.00 0.00 3.72
324 325 1.079543 CGTGGAGAGAAGGGCTGTG 60.080 63.158 0.00 0.00 0.00 3.66
325 326 2.948720 GCGTGGAGAGAAGGGCTGT 61.949 63.158 0.00 0.00 0.00 4.40
326 327 2.125350 GCGTGGAGAGAAGGGCTG 60.125 66.667 0.00 0.00 0.00 4.85
327 328 3.394836 GGCGTGGAGAGAAGGGCT 61.395 66.667 0.00 0.00 0.00 5.19
328 329 4.821589 CGGCGTGGAGAGAAGGGC 62.822 72.222 0.00 0.00 0.00 5.19
329 330 4.148825 CCGGCGTGGAGAGAAGGG 62.149 72.222 6.01 0.00 42.00 3.95
330 331 3.358076 GACCGGCGTGGAGAGAAGG 62.358 68.421 6.01 0.00 42.00 3.46
331 332 2.182030 GACCGGCGTGGAGAGAAG 59.818 66.667 6.01 0.00 42.00 2.85
332 333 2.282958 AGACCGGCGTGGAGAGAA 60.283 61.111 6.01 0.00 42.00 2.87
333 334 2.750637 GAGACCGGCGTGGAGAGA 60.751 66.667 6.01 0.00 42.00 3.10
334 335 3.057547 CTGAGACCGGCGTGGAGAG 62.058 68.421 6.01 0.00 42.00 3.20
335 336 3.062466 CTGAGACCGGCGTGGAGA 61.062 66.667 6.01 0.00 42.00 3.71
336 337 4.803426 GCTGAGACCGGCGTGGAG 62.803 72.222 6.01 0.00 42.00 3.86
339 340 4.379243 AAGGCTGAGACCGGCGTG 62.379 66.667 6.01 0.00 45.55 5.34
340 341 4.070552 GAAGGCTGAGACCGGCGT 62.071 66.667 6.01 0.00 45.55 5.68
341 342 4.821589 GGAAGGCTGAGACCGGCG 62.822 72.222 0.00 0.00 45.55 6.46
342 343 3.378399 GAGGAAGGCTGAGACCGGC 62.378 68.421 0.00 0.00 43.89 6.13
343 344 1.333636 ATGAGGAAGGCTGAGACCGG 61.334 60.000 0.00 0.00 33.69 5.28
344 345 0.103937 GATGAGGAAGGCTGAGACCG 59.896 60.000 0.00 0.00 33.69 4.79
345 346 0.103937 CGATGAGGAAGGCTGAGACC 59.896 60.000 0.00 0.00 0.00 3.85
346 347 0.820871 ACGATGAGGAAGGCTGAGAC 59.179 55.000 0.00 0.00 0.00 3.36
347 348 1.205655 CAACGATGAGGAAGGCTGAGA 59.794 52.381 0.00 0.00 0.00 3.27
348 349 1.205655 TCAACGATGAGGAAGGCTGAG 59.794 52.381 0.00 0.00 0.00 3.35
349 350 1.066858 GTCAACGATGAGGAAGGCTGA 60.067 52.381 0.00 0.00 35.88 4.26
350 351 1.363744 GTCAACGATGAGGAAGGCTG 58.636 55.000 0.00 0.00 35.88 4.85
351 352 0.250513 GGTCAACGATGAGGAAGGCT 59.749 55.000 0.00 0.00 35.88 4.58
352 353 2.768834 GGTCAACGATGAGGAAGGC 58.231 57.895 0.00 0.00 35.88 4.35
364 365 4.683334 GCGGCTTGCACGGTCAAC 62.683 66.667 0.00 0.00 45.45 3.18
379 380 4.988598 AGTGTCTGGCGGTTGGCG 62.989 66.667 0.00 0.00 44.92 5.69
380 381 3.357079 CAGTGTCTGGCGGTTGGC 61.357 66.667 0.00 0.00 42.51 4.52
381 382 2.669569 CCAGTGTCTGGCGGTTGG 60.670 66.667 2.77 0.00 45.13 3.77
389 390 1.300971 CCCGCATGTTCCAGTGTCTG 61.301 60.000 0.00 0.00 0.00 3.51
390 391 1.003355 CCCGCATGTTCCAGTGTCT 60.003 57.895 0.00 0.00 0.00 3.41
391 392 1.003839 TCCCGCATGTTCCAGTGTC 60.004 57.895 0.00 0.00 0.00 3.67
392 393 1.302511 GTCCCGCATGTTCCAGTGT 60.303 57.895 0.00 0.00 0.00 3.55
393 394 2.390599 CGTCCCGCATGTTCCAGTG 61.391 63.158 0.00 0.00 0.00 3.66
394 395 2.047274 CGTCCCGCATGTTCCAGT 60.047 61.111 0.00 0.00 0.00 4.00
417 418 4.175489 TCTGACGCGCTCGGTAGC 62.175 66.667 5.73 0.00 45.86 3.58
418 419 1.426816 TACTCTGACGCGCTCGGTAG 61.427 60.000 5.73 9.92 40.69 3.18
419 420 1.426816 CTACTCTGACGCGCTCGGTA 61.427 60.000 5.73 2.67 40.69 4.02
420 421 2.745100 TACTCTGACGCGCTCGGT 60.745 61.111 5.73 1.43 40.69 4.69
421 422 2.023461 CTACTCTGACGCGCTCGG 59.977 66.667 5.73 8.66 40.69 4.63
422 423 1.011684 CTCTACTCTGACGCGCTCG 60.012 63.158 5.73 0.00 42.43 5.03
423 424 1.090625 TCCTCTACTCTGACGCGCTC 61.091 60.000 5.73 3.58 0.00 5.03
424 425 1.078356 TCCTCTACTCTGACGCGCT 60.078 57.895 5.73 0.00 0.00 5.92
425 426 1.062845 GTCCTCTACTCTGACGCGC 59.937 63.158 5.73 0.00 0.00 6.86
426 427 1.348938 CGTCCTCTACTCTGACGCG 59.651 63.158 3.53 3.53 44.29 6.01
429 430 1.394618 ATGCCGTCCTCTACTCTGAC 58.605 55.000 0.00 0.00 0.00 3.51
430 431 1.751351 CAATGCCGTCCTCTACTCTGA 59.249 52.381 0.00 0.00 0.00 3.27
431 432 1.478510 ACAATGCCGTCCTCTACTCTG 59.521 52.381 0.00 0.00 0.00 3.35
432 433 1.751924 GACAATGCCGTCCTCTACTCT 59.248 52.381 0.00 0.00 0.00 3.24
433 434 1.751924 AGACAATGCCGTCCTCTACTC 59.248 52.381 0.00 0.00 36.52 2.59
434 435 1.853963 AGACAATGCCGTCCTCTACT 58.146 50.000 0.00 0.00 36.52 2.57
435 436 2.673368 CAAAGACAATGCCGTCCTCTAC 59.327 50.000 0.00 0.00 36.52 2.59
436 437 2.354704 CCAAAGACAATGCCGTCCTCTA 60.355 50.000 0.00 0.00 36.52 2.43
437 438 1.611673 CCAAAGACAATGCCGTCCTCT 60.612 52.381 0.00 0.00 36.52 3.69
438 439 0.804989 CCAAAGACAATGCCGTCCTC 59.195 55.000 0.00 0.00 36.52 3.71
439 440 1.244019 GCCAAAGACAATGCCGTCCT 61.244 55.000 0.00 0.00 36.52 3.85
440 441 1.212751 GCCAAAGACAATGCCGTCC 59.787 57.895 0.00 0.00 36.52 4.79
441 442 1.212751 GGCCAAAGACAATGCCGTC 59.787 57.895 0.00 0.00 33.59 4.79
442 443 3.365535 GGCCAAAGACAATGCCGT 58.634 55.556 0.00 0.00 33.59 5.68
444 445 1.203287 GAGAAGGCCAAAGACAATGCC 59.797 52.381 5.01 0.00 44.35 4.40
445 446 1.203287 GGAGAAGGCCAAAGACAATGC 59.797 52.381 5.01 0.00 0.00 3.56
446 447 2.517959 TGGAGAAGGCCAAAGACAATG 58.482 47.619 5.01 0.00 34.31 2.82
447 448 2.978156 TGGAGAAGGCCAAAGACAAT 57.022 45.000 5.01 0.00 34.31 2.71
448 449 2.108075 TGATGGAGAAGGCCAAAGACAA 59.892 45.455 5.01 0.00 42.16 3.18
449 450 1.704628 TGATGGAGAAGGCCAAAGACA 59.295 47.619 5.01 0.00 42.16 3.41
450 451 2.026822 TCTGATGGAGAAGGCCAAAGAC 60.027 50.000 5.01 0.00 42.16 3.01
451 452 2.269023 TCTGATGGAGAAGGCCAAAGA 58.731 47.619 5.01 0.00 42.16 2.52
452 453 2.795231 TCTGATGGAGAAGGCCAAAG 57.205 50.000 5.01 0.00 42.16 2.77
460 461 1.339438 GCCACTGCTTCTGATGGAGAA 60.339 52.381 16.92 0.00 38.45 2.87
461 462 0.251354 GCCACTGCTTCTGATGGAGA 59.749 55.000 16.92 0.00 33.80 3.71
462 463 1.088340 CGCCACTGCTTCTGATGGAG 61.088 60.000 9.94 9.94 33.80 3.86
463 464 1.078918 CGCCACTGCTTCTGATGGA 60.079 57.895 0.00 0.00 33.80 3.41
464 465 2.110967 CCGCCACTGCTTCTGATGG 61.111 63.158 0.00 0.00 34.43 3.51
465 466 1.078918 TCCGCCACTGCTTCTGATG 60.079 57.895 0.00 0.00 34.43 3.07
466 467 1.220206 CTCCGCCACTGCTTCTGAT 59.780 57.895 0.00 0.00 34.43 2.90
467 468 2.659016 CTCCGCCACTGCTTCTGA 59.341 61.111 0.00 0.00 34.43 3.27
468 469 2.230994 TAGCTCCGCCACTGCTTCTG 62.231 60.000 0.00 0.00 38.15 3.02
469 470 1.984570 TAGCTCCGCCACTGCTTCT 60.985 57.895 0.00 0.00 38.15 2.85
470 471 1.811679 GTAGCTCCGCCACTGCTTC 60.812 63.158 0.00 0.00 38.15 3.86
471 472 2.266055 GTAGCTCCGCCACTGCTT 59.734 61.111 0.00 0.00 38.15 3.91
472 473 2.997315 TGTAGCTCCGCCACTGCT 60.997 61.111 0.00 0.00 40.43 4.24
473 474 2.815647 GTGTAGCTCCGCCACTGC 60.816 66.667 0.00 0.00 0.00 4.40
474 475 2.125512 GGTGTAGCTCCGCCACTG 60.126 66.667 3.64 0.00 35.02 3.66
475 476 2.603473 TGGTGTAGCTCCGCCACT 60.603 61.111 7.61 0.00 40.01 4.00
476 477 2.125512 CTGGTGTAGCTCCGCCAC 60.126 66.667 7.61 2.52 40.01 5.01
477 478 1.264749 ATTCTGGTGTAGCTCCGCCA 61.265 55.000 11.48 11.48 42.56 5.69
478 479 0.107654 AATTCTGGTGTAGCTCCGCC 60.108 55.000 1.13 1.13 35.49 6.13
479 480 1.009829 CAATTCTGGTGTAGCTCCGC 58.990 55.000 0.00 0.00 0.00 5.54
480 481 1.009829 GCAATTCTGGTGTAGCTCCG 58.990 55.000 0.00 0.00 0.00 4.63
481 482 1.009829 CGCAATTCTGGTGTAGCTCC 58.990 55.000 0.00 0.00 0.00 4.70
482 483 2.010145 TCGCAATTCTGGTGTAGCTC 57.990 50.000 0.00 0.00 0.00 4.09
483 484 2.472695 TTCGCAATTCTGGTGTAGCT 57.527 45.000 0.00 0.00 0.00 3.32
484 485 3.552604 TTTTCGCAATTCTGGTGTAGC 57.447 42.857 0.00 0.00 0.00 3.58
485 486 5.108385 AGTTTTTCGCAATTCTGGTGTAG 57.892 39.130 0.00 0.00 0.00 2.74
486 487 6.621316 TTAGTTTTTCGCAATTCTGGTGTA 57.379 33.333 0.00 0.00 0.00 2.90
487 488 5.508200 TTAGTTTTTCGCAATTCTGGTGT 57.492 34.783 0.00 0.00 0.00 4.16
488 489 7.406799 AAATTAGTTTTTCGCAATTCTGGTG 57.593 32.000 0.00 0.00 0.00 4.17
489 490 7.518211 GCAAAATTAGTTTTTCGCAATTCTGGT 60.518 33.333 0.00 0.00 35.31 4.00
490 491 6.791775 GCAAAATTAGTTTTTCGCAATTCTGG 59.208 34.615 0.00 0.00 35.31 3.86
491 492 7.566709 AGCAAAATTAGTTTTTCGCAATTCTG 58.433 30.769 8.00 0.00 35.31 3.02
492 493 7.713764 AGCAAAATTAGTTTTTCGCAATTCT 57.286 28.000 8.00 0.00 35.31 2.40
493 494 7.530525 GGAAGCAAAATTAGTTTTTCGCAATTC 59.469 33.333 8.00 4.81 35.31 2.17
494 495 7.011857 TGGAAGCAAAATTAGTTTTTCGCAATT 59.988 29.630 8.00 0.00 35.31 2.32
495 496 6.481644 TGGAAGCAAAATTAGTTTTTCGCAAT 59.518 30.769 8.00 0.00 35.31 3.56
496 497 5.812642 TGGAAGCAAAATTAGTTTTTCGCAA 59.187 32.000 8.00 0.00 35.31 4.85
497 498 5.352284 TGGAAGCAAAATTAGTTTTTCGCA 58.648 33.333 8.00 0.00 35.31 5.10
498 499 5.898630 TGGAAGCAAAATTAGTTTTTCGC 57.101 34.783 0.00 0.00 35.31 4.70
515 516 5.586643 GTCAGTTAGAGGGCTTAAATGGAAG 59.413 44.000 5.22 0.00 0.00 3.46
516 517 5.497474 GTCAGTTAGAGGGCTTAAATGGAA 58.503 41.667 5.22 0.00 0.00 3.53
517 518 4.382685 CGTCAGTTAGAGGGCTTAAATGGA 60.383 45.833 5.22 0.00 0.00 3.41
518 519 3.871594 CGTCAGTTAGAGGGCTTAAATGG 59.128 47.826 5.22 0.00 0.00 3.16
519 520 3.309954 GCGTCAGTTAGAGGGCTTAAATG 59.690 47.826 0.00 0.00 32.81 2.32
520 521 3.532542 GCGTCAGTTAGAGGGCTTAAAT 58.467 45.455 0.00 0.00 32.81 1.40
521 522 2.673043 CGCGTCAGTTAGAGGGCTTAAA 60.673 50.000 0.00 0.00 32.81 1.52
522 523 1.135199 CGCGTCAGTTAGAGGGCTTAA 60.135 52.381 0.00 0.00 32.81 1.85
523 524 0.454600 CGCGTCAGTTAGAGGGCTTA 59.545 55.000 0.00 0.00 32.81 3.09
524 525 1.215647 CGCGTCAGTTAGAGGGCTT 59.784 57.895 0.00 0.00 32.81 4.35
525 526 1.248785 TTCGCGTCAGTTAGAGGGCT 61.249 55.000 5.77 0.00 32.81 5.19
526 527 1.077089 GTTCGCGTCAGTTAGAGGGC 61.077 60.000 5.77 0.00 32.81 5.19
527 528 0.458025 GGTTCGCGTCAGTTAGAGGG 60.458 60.000 5.77 0.00 32.81 4.30
528 529 0.797249 CGGTTCGCGTCAGTTAGAGG 60.797 60.000 5.77 0.00 35.26 3.69
529 530 0.797249 CCGGTTCGCGTCAGTTAGAG 60.797 60.000 5.77 0.00 0.00 2.43
530 531 1.210931 CCGGTTCGCGTCAGTTAGA 59.789 57.895 5.77 0.00 0.00 2.10
531 532 1.069378 GTCCGGTTCGCGTCAGTTAG 61.069 60.000 5.77 0.00 0.00 2.34
532 533 1.081242 GTCCGGTTCGCGTCAGTTA 60.081 57.895 5.77 0.00 0.00 2.24
533 534 2.355481 GTCCGGTTCGCGTCAGTT 60.355 61.111 5.77 0.00 0.00 3.16
534 535 4.353437 GGTCCGGTTCGCGTCAGT 62.353 66.667 5.77 0.00 0.00 3.41
546 547 0.739813 GATTCAAGTGGTCCGGTCCG 60.740 60.000 13.27 3.60 0.00 4.79
547 548 0.613777 AGATTCAAGTGGTCCGGTCC 59.386 55.000 11.20 11.20 0.00 4.46
548 549 2.076863 CAAGATTCAAGTGGTCCGGTC 58.923 52.381 0.00 0.00 0.00 4.79
549 550 1.697432 TCAAGATTCAAGTGGTCCGGT 59.303 47.619 0.00 0.00 0.00 5.28
550 551 2.076863 GTCAAGATTCAAGTGGTCCGG 58.923 52.381 0.00 0.00 0.00 5.14
551 552 2.996621 GAGTCAAGATTCAAGTGGTCCG 59.003 50.000 0.00 0.00 0.00 4.79
552 553 3.748568 GTGAGTCAAGATTCAAGTGGTCC 59.251 47.826 0.00 0.00 0.00 4.46
553 554 4.212214 GTGTGAGTCAAGATTCAAGTGGTC 59.788 45.833 0.00 0.00 0.00 4.02
554 555 4.130118 GTGTGAGTCAAGATTCAAGTGGT 58.870 43.478 0.00 0.00 0.00 4.16
555 556 4.129380 TGTGTGAGTCAAGATTCAAGTGG 58.871 43.478 0.00 0.00 0.00 4.00
556 557 5.065090 TGTTGTGTGAGTCAAGATTCAAGTG 59.935 40.000 0.00 0.00 0.00 3.16
557 558 5.185454 TGTTGTGTGAGTCAAGATTCAAGT 58.815 37.500 0.00 0.00 0.00 3.16
558 559 5.739752 TGTTGTGTGAGTCAAGATTCAAG 57.260 39.130 0.00 0.00 0.00 3.02
559 560 5.589855 ACATGTTGTGTGAGTCAAGATTCAA 59.410 36.000 0.00 0.00 40.28 2.69
560 561 5.125356 ACATGTTGTGTGAGTCAAGATTCA 58.875 37.500 0.00 0.00 40.28 2.57
561 562 5.679734 ACATGTTGTGTGAGTCAAGATTC 57.320 39.130 0.00 0.00 40.28 2.52
573 574 1.669604 TGCGTTACCACATGTTGTGT 58.330 45.000 12.62 5.37 46.45 3.72
575 576 2.987413 CATGCGTTACCACATGTTGT 57.013 45.000 7.80 7.80 39.05 3.32
580 581 3.407698 TGAAGAACATGCGTTACCACAT 58.592 40.909 0.00 0.00 34.75 3.21
581 582 2.839975 TGAAGAACATGCGTTACCACA 58.160 42.857 0.00 0.00 34.75 4.17
592 593 2.420022 GCGGCTAACACATGAAGAACAT 59.580 45.455 0.00 0.00 40.17 2.71
593 594 1.804151 GCGGCTAACACATGAAGAACA 59.196 47.619 0.00 0.00 0.00 3.18
594 595 1.804151 TGCGGCTAACACATGAAGAAC 59.196 47.619 0.00 0.00 0.00 3.01
595 596 2.076100 CTGCGGCTAACACATGAAGAA 58.924 47.619 0.00 0.00 0.00 2.52
596 597 1.675714 CCTGCGGCTAACACATGAAGA 60.676 52.381 0.00 0.00 0.00 2.87
597 598 0.729116 CCTGCGGCTAACACATGAAG 59.271 55.000 0.00 0.00 0.00 3.02
598 599 0.036164 ACCTGCGGCTAACACATGAA 59.964 50.000 0.00 0.00 0.00 2.57
599 600 0.673333 CACCTGCGGCTAACACATGA 60.673 55.000 0.00 0.00 0.00 3.07
600 601 0.955428 ACACCTGCGGCTAACACATG 60.955 55.000 0.00 0.00 0.00 3.21
601 602 0.955428 CACACCTGCGGCTAACACAT 60.955 55.000 0.00 0.00 0.00 3.21
602 603 1.596752 CACACCTGCGGCTAACACA 60.597 57.895 0.00 0.00 0.00 3.72
603 604 2.325082 CCACACCTGCGGCTAACAC 61.325 63.158 0.00 0.00 0.00 3.32
604 605 2.031919 CCACACCTGCGGCTAACA 59.968 61.111 0.00 0.00 0.00 2.41
605 606 2.746277 CCCACACCTGCGGCTAAC 60.746 66.667 0.00 0.00 0.00 2.34
606 607 4.715523 GCCCACACCTGCGGCTAA 62.716 66.667 0.00 0.00 39.70 3.09
612 613 4.684134 ACCCATGCCCACACCTGC 62.684 66.667 0.00 0.00 0.00 4.85
613 614 2.361610 GACCCATGCCCACACCTG 60.362 66.667 0.00 0.00 0.00 4.00
614 615 2.215451 GATGACCCATGCCCACACCT 62.215 60.000 0.00 0.00 0.00 4.00
615 616 1.754234 GATGACCCATGCCCACACC 60.754 63.158 0.00 0.00 0.00 4.16
616 617 0.396139 ATGATGACCCATGCCCACAC 60.396 55.000 0.00 0.00 0.00 3.82
617 618 1.220703 TATGATGACCCATGCCCACA 58.779 50.000 0.00 0.00 0.00 4.17
618 619 2.592102 ATATGATGACCCATGCCCAC 57.408 50.000 0.00 0.00 0.00 4.61
619 620 2.985311 TGTATATGATGACCCATGCCCA 59.015 45.455 0.00 0.00 0.00 5.36
620 621 3.719268 TGTATATGATGACCCATGCCC 57.281 47.619 0.00 0.00 0.00 5.36
621 622 5.255687 TCAATGTATATGATGACCCATGCC 58.744 41.667 0.00 0.00 0.00 4.40
622 623 6.600427 TGATCAATGTATATGATGACCCATGC 59.400 38.462 0.00 0.00 37.64 4.06
623 624 7.201705 GCTGATCAATGTATATGATGACCCATG 60.202 40.741 0.00 0.00 37.64 3.66
624 625 6.827251 GCTGATCAATGTATATGATGACCCAT 59.173 38.462 0.00 0.00 37.64 4.00
668 669 3.251479 TGTTCTCCGGAATGTCTGATG 57.749 47.619 5.23 0.00 33.71 3.07
680 681 1.522668 TGGATGTGCTTTGTTCTCCG 58.477 50.000 0.00 0.00 0.00 4.63
681 682 4.525912 AAATGGATGTGCTTTGTTCTCC 57.474 40.909 0.00 0.00 0.00 3.71
705 706 5.279056 GGTCCAAAATTTGAATGGTCGGTTA 60.279 40.000 7.37 0.00 35.66 2.85
712 713 6.040209 TGAGATGGTCCAAAATTTGAATGG 57.960 37.500 7.37 1.52 35.49 3.16
780 782 1.452145 AATTGTGCACCTTTCGCGGT 61.452 50.000 15.69 0.00 37.93 5.68
786 788 4.224147 GGGGGTAATAAATTGTGCACCTTT 59.776 41.667 15.69 15.88 0.00 3.11
806 808 6.141083 TCTTATATATTATGGGACCGAGGGG 58.859 44.000 0.00 0.00 40.11 4.79
833 835 8.001292 CCCTCAGTCCCAAAATATAAGAGAAAT 58.999 37.037 0.00 0.00 0.00 2.17
891 895 1.225745 CCATTTCTCGTTGACGCGC 60.226 57.895 5.73 0.00 39.60 6.86
914 919 1.342074 CAGCTATGGGCCTAGCACTA 58.658 55.000 26.24 0.00 45.35 2.74
930 935 3.044305 GGTCCATATCGCGCCAGC 61.044 66.667 0.00 0.00 40.74 4.85
932 937 4.961511 GCGGTCCATATCGCGCCA 62.962 66.667 0.00 0.00 46.78 5.69
1032 1037 1.349542 CGGAGGAGGAGGAGAGGAGA 61.350 65.000 0.00 0.00 0.00 3.71
1332 1346 2.048503 AGCGCGTTGTAGGACACC 60.049 61.111 8.43 0.00 0.00 4.16
1578 1592 3.936453 TCTTGGCGTACATATCAACCAAC 59.064 43.478 0.00 0.00 33.77 3.77
1671 1685 0.676736 GGAGGAGACCCGTGATCATC 59.323 60.000 0.00 0.00 37.58 2.92
1830 1844 2.894257 AATGCCGACACCCTCAGCA 61.894 57.895 0.00 0.00 37.94 4.41
1833 1847 0.107703 GATCAATGCCGACACCCTCA 60.108 55.000 0.00 0.00 0.00 3.86
1842 1856 3.242091 CGAAAGTGTACTGATCAATGCCG 60.242 47.826 0.00 0.00 0.00 5.69
1917 1931 4.508551 TCTGATTGTGTAGGCATGGATT 57.491 40.909 0.00 0.00 0.00 3.01
1959 1973 1.203523 ACAAGCGCACTTCCAACAAAA 59.796 42.857 11.47 0.00 32.29 2.44
1971 1985 1.798223 GAGTACATGTCAACAAGCGCA 59.202 47.619 11.47 0.00 0.00 6.09
2040 2054 5.421056 AGTCCATGAGATGATGTTTTTGCAT 59.579 36.000 0.00 0.00 0.00 3.96
2064 2078 1.948834 CCATAGCCAACGATCATTGCA 59.051 47.619 0.00 0.00 0.00 4.08
2073 2087 1.942657 CCATTCTGTCCATAGCCAACG 59.057 52.381 0.00 0.00 0.00 4.10
2326 2340 3.189080 TGAAACGGCATCTCATCAAACAG 59.811 43.478 0.00 0.00 0.00 3.16
2706 2720 3.507233 CCCATTTCCCAATATCCATGTCG 59.493 47.826 0.00 0.00 0.00 4.35
2715 2729 1.287442 TCAGCAGCCCATTTCCCAATA 59.713 47.619 0.00 0.00 0.00 1.90
2836 2850 1.053835 TGCCTATCCCTCATTCCGCA 61.054 55.000 0.00 0.00 0.00 5.69
2986 3000 3.198635 TCAGGCTTGTATCCTTCTTCCAG 59.801 47.826 0.00 0.00 0.00 3.86
3514 3530 6.712276 ACCAACCAACAATTAGGAACAAAAA 58.288 32.000 0.00 0.00 0.00 1.94
3689 3708 3.145286 TCTGTCAATGTGCCGAATTTGA 58.855 40.909 0.00 0.00 0.00 2.69
4002 4023 0.034767 AGACTCGGTGGACGGTGATA 60.035 55.000 0.00 0.00 44.45 2.15
4009 4030 3.870633 AATAACAGAGACTCGGTGGAC 57.129 47.619 9.11 0.00 0.00 4.02
4015 4036 3.799420 GCCAAGCTAATAACAGAGACTCG 59.201 47.826 0.00 0.00 0.00 4.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.