Multiple sequence alignment - TraesCS6D01G025900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G025900 chr6D 100.000 3608 0 0 1 3608 9912048 9915655 0.000000e+00 6663
1 TraesCS6D01G025900 chr6D 82.411 2962 383 65 28 2890 10311549 10308627 0.000000e+00 2457
2 TraesCS6D01G025900 chr6D 80.155 1935 333 33 836 2750 9852705 9850802 0.000000e+00 1399
3 TraesCS6D01G025900 chr6D 78.130 2021 383 41 890 2890 9860599 9858618 0.000000e+00 1229
4 TraesCS6D01G025900 chr6D 82.222 540 84 8 2212 2748 10315955 10315425 4.250000e-124 455
5 TraesCS6D01G025900 chr6A 82.951 2874 359 84 14 2819 11682265 11679455 0.000000e+00 2471
6 TraesCS6D01G025900 chr6A 83.289 1873 253 43 962 2819 11732792 11730965 0.000000e+00 1670
7 TraesCS6D01G025900 chr6A 91.009 1090 61 8 1 1063 11467461 11468540 0.000000e+00 1435
8 TraesCS6D01G025900 chr6A 79.897 1164 198 15 1733 2890 11475897 11477030 0.000000e+00 821
9 TraesCS6D01G025900 chr6A 83.866 688 97 10 2207 2890 11498446 11499123 0.000000e+00 643
10 TraesCS6D01G025900 chr6A 81.692 721 98 16 2900 3606 11499103 11499803 1.450000e-158 569
11 TraesCS6D01G025900 chr6A 84.133 542 63 11 14 538 11756393 11755858 1.500000e-138 503
12 TraesCS6D01G025900 chr6A 82.639 432 41 15 555 964 11747317 11746898 5.730000e-93 351
13 TraesCS6D01G025900 chrUn 88.163 1943 200 22 1 1932 240890892 240892815 0.000000e+00 2287
14 TraesCS6D01G025900 chrUn 88.096 1949 202 22 1 1938 268933008 268931079 0.000000e+00 2287
15 TraesCS6D01G025900 chrUn 90.473 1459 88 18 1 1429 300672860 300674297 0.000000e+00 1877
16 TraesCS6D01G025900 chrUn 84.427 899 121 12 2000 2890 240892833 240893720 0.000000e+00 867
17 TraesCS6D01G025900 chrUn 84.427 899 121 12 2000 2890 268931067 268930180 0.000000e+00 867
18 TraesCS6D01G025900 chrUn 92.652 313 19 3 1 312 240889659 240889968 7.110000e-122 448
19 TraesCS6D01G025900 chrUn 92.652 313 19 3 1 312 268934241 268933932 7.110000e-122 448
20 TraesCS6D01G025900 chr6B 82.876 1933 292 27 972 2885 18225430 18227342 0.000000e+00 1700
21 TraesCS6D01G025900 chr6B 80.253 1980 348 24 928 2890 18266420 18268373 0.000000e+00 1450
22 TraesCS6D01G025900 chr6B 80.071 1962 332 37 812 2750 17729258 17727333 0.000000e+00 1402
23 TraesCS6D01G025900 chr6B 79.867 1957 336 31 812 2750 18015432 18017348 0.000000e+00 1378
24 TraesCS6D01G025900 chr6B 78.828 1946 342 46 972 2890 18165045 18166947 0.000000e+00 1247
25 TraesCS6D01G025900 chr6B 79.044 1799 329 31 963 2748 17998761 18000524 0.000000e+00 1190
26 TraesCS6D01G025900 chr6B 82.845 717 106 14 2900 3608 18268353 18269060 8.500000e-176 627
27 TraesCS6D01G025900 chr6B 80.028 711 108 17 2900 3602 18166927 18167611 2.500000e-136 496
28 TraesCS6D01G025900 chr6B 84.577 402 46 9 3207 3606 18431284 18431671 5.650000e-103 385
29 TraesCS6D01G025900 chr6B 87.425 334 32 9 542 873 18812357 18812682 3.400000e-100 375
30 TraesCS6D01G025900 chr6B 79.630 540 89 12 2212 2748 18848119 18847598 5.690000e-98 368


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G025900 chr6D 9912048 9915655 3607 False 6663.000000 6663 100.000000 1 3608 1 chr6D.!!$F1 3607
1 TraesCS6D01G025900 chr6D 10308627 10315955 7328 True 1456.000000 2457 82.316500 28 2890 2 chr6D.!!$R3 2862
2 TraesCS6D01G025900 chr6D 9850802 9852705 1903 True 1399.000000 1399 80.155000 836 2750 1 chr6D.!!$R1 1914
3 TraesCS6D01G025900 chr6D 9858618 9860599 1981 True 1229.000000 1229 78.130000 890 2890 1 chr6D.!!$R2 2000
4 TraesCS6D01G025900 chr6A 11679455 11682265 2810 True 2471.000000 2471 82.951000 14 2819 1 chr6A.!!$R1 2805
5 TraesCS6D01G025900 chr6A 11730965 11732792 1827 True 1670.000000 1670 83.289000 962 2819 1 chr6A.!!$R2 1857
6 TraesCS6D01G025900 chr6A 11467461 11468540 1079 False 1435.000000 1435 91.009000 1 1063 1 chr6A.!!$F1 1062
7 TraesCS6D01G025900 chr6A 11475897 11477030 1133 False 821.000000 821 79.897000 1733 2890 1 chr6A.!!$F2 1157
8 TraesCS6D01G025900 chr6A 11498446 11499803 1357 False 606.000000 643 82.779000 2207 3606 2 chr6A.!!$F3 1399
9 TraesCS6D01G025900 chr6A 11755858 11756393 535 True 503.000000 503 84.133000 14 538 1 chr6A.!!$R4 524
10 TraesCS6D01G025900 chrUn 300672860 300674297 1437 False 1877.000000 1877 90.473000 1 1429 1 chrUn.!!$F1 1428
11 TraesCS6D01G025900 chrUn 240889659 240893720 4061 False 1200.666667 2287 88.414000 1 2890 3 chrUn.!!$F2 2889
12 TraesCS6D01G025900 chrUn 268930180 268934241 4061 True 1200.666667 2287 88.391667 1 2890 3 chrUn.!!$R1 2889
13 TraesCS6D01G025900 chr6B 18225430 18227342 1912 False 1700.000000 1700 82.876000 972 2885 1 chr6B.!!$F3 1913
14 TraesCS6D01G025900 chr6B 17727333 17729258 1925 True 1402.000000 1402 80.071000 812 2750 1 chr6B.!!$R1 1938
15 TraesCS6D01G025900 chr6B 18015432 18017348 1916 False 1378.000000 1378 79.867000 812 2750 1 chr6B.!!$F2 1938
16 TraesCS6D01G025900 chr6B 17998761 18000524 1763 False 1190.000000 1190 79.044000 963 2748 1 chr6B.!!$F1 1785
17 TraesCS6D01G025900 chr6B 18266420 18269060 2640 False 1038.500000 1450 81.549000 928 3608 2 chr6B.!!$F7 2680
18 TraesCS6D01G025900 chr6B 18165045 18167611 2566 False 871.500000 1247 79.428000 972 3602 2 chr6B.!!$F6 2630
19 TraesCS6D01G025900 chr6B 18847598 18848119 521 True 368.000000 368 79.630000 2212 2748 1 chr6B.!!$R2 536

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
272 4665 2.032549 CACAAGAAAGAAGCACCTCACG 60.033 50.0 0.0 0.0 0.0 4.35 F
1166 6907 0.035725 CAGTCAATGAGGCCTGCAGA 60.036 55.0 12.0 0.0 0.0 4.26 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1992 7761 0.169451 GCCGAAACGTGTTATTGGGG 59.831 55.0 0.0 0.0 0.0 4.96 R
2915 8727 0.112218 CCACCATCCACCCTTGAACA 59.888 55.0 0.0 0.0 0.0 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
88 4468 6.016276 AGACATCGTTGCAACCTTTTATCTTT 60.016 34.615 23.42 0.00 0.00 2.52
89 4469 7.174253 AGACATCGTTGCAACCTTTTATCTTTA 59.826 33.333 23.42 0.00 0.00 1.85
184 4570 4.090761 TCCTGGCATGGATTGAGAATAC 57.909 45.455 0.00 0.00 0.00 1.89
194 4586 5.428253 TGGATTGAGAATACGGAAAAGGAG 58.572 41.667 0.00 0.00 0.00 3.69
272 4665 2.032549 CACAAGAAAGAAGCACCTCACG 60.033 50.000 0.00 0.00 0.00 4.35
430 6079 3.452627 CCAAGGTATGTTCTAGCTCACCT 59.547 47.826 0.00 0.00 38.01 4.00
538 6210 2.887152 GGCAGGAAGTCAACAACTGATT 59.113 45.455 0.00 0.00 38.58 2.57
676 6373 5.590530 ACTTTTGCACTTACAAATCACCA 57.409 34.783 0.00 0.00 39.18 4.17
680 6377 4.418013 TGCACTTACAAATCACCATTCG 57.582 40.909 0.00 0.00 0.00 3.34
906 6634 4.336993 GGGTCAACTTATTGTGTGTGTTCA 59.663 41.667 0.00 0.00 37.11 3.18
1064 6805 3.513119 ACTACAAGCAGCAGAGAGAATGA 59.487 43.478 0.00 0.00 0.00 2.57
1065 6806 2.975266 ACAAGCAGCAGAGAGAATGAG 58.025 47.619 0.00 0.00 0.00 2.90
1114 6855 2.117156 GCATCTGCCGTCCTGCAAT 61.117 57.895 0.00 0.00 41.51 3.56
1148 6889 1.159285 CTTGGAGCGTCAAATGAGCA 58.841 50.000 7.32 0.00 0.00 4.26
1154 6895 2.417933 GAGCGTCAAATGAGCAGTCAAT 59.582 45.455 7.32 0.00 35.88 2.57
1166 6907 0.035725 CAGTCAATGAGGCCTGCAGA 60.036 55.000 12.00 0.00 0.00 4.26
1281 7022 3.131577 CCAATTGGGTGATGGAGATGTTG 59.868 47.826 17.36 0.00 36.27 3.33
1395 7140 5.934043 CACACAGAATCACAGATTCTTGGTA 59.066 40.000 17.14 0.00 36.32 3.25
1508 7253 1.032114 CAAGGGAGGTTCCGGATTGC 61.032 60.000 4.15 0.00 37.43 3.56
1530 7275 2.037641 TCCCAAGATGACAGACAGTGTG 59.962 50.000 0.00 0.00 40.56 3.82
1531 7276 2.037641 CCCAAGATGACAGACAGTGTGA 59.962 50.000 0.00 0.00 40.56 3.58
1532 7277 3.494924 CCCAAGATGACAGACAGTGTGAA 60.495 47.826 0.00 0.00 40.56 3.18
1577 7325 3.558931 TCTTTCAGCTTCAAGTGGTGA 57.441 42.857 2.29 0.00 39.71 4.02
1595 7343 2.181777 GCGAGATCCACGTGAGCA 59.818 61.111 19.30 0.00 0.00 4.26
1602 7350 1.398390 GATCCACGTGAGCATTGGTTC 59.602 52.381 19.30 0.00 0.00 3.62
1633 7381 0.535780 TGAGGAGGCTGCACAAGTTG 60.536 55.000 9.23 0.00 0.00 3.16
1678 7435 2.608623 TCATCGATCCAGGGATTGCTA 58.391 47.619 10.24 0.00 36.28 3.49
1681 7438 3.238788 TCGATCCAGGGATTGCTACTA 57.761 47.619 10.24 0.00 36.28 1.82
1683 7440 3.321111 TCGATCCAGGGATTGCTACTAAC 59.679 47.826 10.24 0.00 36.28 2.34
1703 7460 8.391075 ACTAACTGTGTTTTGTATGCACTTAT 57.609 30.769 0.00 0.00 34.52 1.73
1706 7463 7.979444 ACTGTGTTTTGTATGCACTTATACT 57.021 32.000 0.00 0.00 35.16 2.12
1714 7471 7.612065 TTGTATGCACTTATACTATCCTGGT 57.388 36.000 0.00 0.00 35.16 4.00
1721 7478 4.975794 ACTTATACTATCCTGGTTTGGCCT 59.024 41.667 3.32 0.00 38.35 5.19
1730 7493 0.825425 TGGTTTGGCCTTCGCATCAA 60.825 50.000 3.32 0.00 38.35 2.57
1748 7511 5.614308 CATCAATGACTATGACTGGGCTAA 58.386 41.667 0.00 0.00 0.00 3.09
1780 7543 6.483307 CAGTAACTATTGGGTATGTGATGGTG 59.517 42.308 0.00 0.00 0.00 4.17
1875 7641 3.813166 ACATTAACACCCGACTCAACAAG 59.187 43.478 0.00 0.00 0.00 3.16
1907 7676 1.844497 AGTAATGGCTTCCTACCACCC 59.156 52.381 0.00 0.00 40.82 4.61
1917 7686 1.079127 CTACCACCCAGCAAGGTCG 60.079 63.158 0.00 0.00 38.39 4.79
1940 7709 1.221414 GAGCTCATGCCGTATTGGAC 58.779 55.000 9.40 0.00 42.00 4.02
1942 7711 2.035961 GAGCTCATGCCGTATTGGACTA 59.964 50.000 9.40 0.00 42.00 2.59
1956 7725 2.828877 TGGACTACCACAACAACTTCG 58.171 47.619 0.00 0.00 41.77 3.79
1961 7730 4.510571 ACTACCACAACAACTTCGACTTT 58.489 39.130 0.00 0.00 0.00 2.66
1980 7749 3.517296 TTTGGATTTGTAGTGAGCCCA 57.483 42.857 0.00 0.00 0.00 5.36
1992 7761 2.017049 GTGAGCCCATGTGGTGTTATC 58.983 52.381 0.00 0.00 36.04 1.75
1996 7765 0.628522 CCCATGTGGTGTTATCCCCA 59.371 55.000 0.00 0.00 0.00 4.96
2081 7850 2.158460 TCTCATCGCCTCCATTCCTCTA 60.158 50.000 0.00 0.00 0.00 2.43
2088 7857 2.423373 GCCTCCATTCCTCTATTGCCAA 60.423 50.000 0.00 0.00 0.00 4.52
2103 7872 0.839946 GCCAAGGCCTGAGATTCCTA 59.160 55.000 5.69 0.00 34.56 2.94
2112 7881 3.737850 CCTGAGATTCCTATGGCTTGAC 58.262 50.000 0.00 0.00 0.00 3.18
2129 7898 2.352805 CCACTGCCAAGACCTCCC 59.647 66.667 0.00 0.00 0.00 4.30
2160 7935 3.470709 CACCACAGATCATCACCATACC 58.529 50.000 0.00 0.00 0.00 2.73
2173 7954 0.179073 CCATACCGAGGCAGACAAGG 60.179 60.000 0.00 0.00 0.00 3.61
2174 7955 0.824109 CATACCGAGGCAGACAAGGA 59.176 55.000 0.00 0.00 0.00 3.36
2175 7956 1.207089 CATACCGAGGCAGACAAGGAA 59.793 52.381 0.00 0.00 0.00 3.36
2176 7957 0.895530 TACCGAGGCAGACAAGGAAG 59.104 55.000 0.00 0.00 0.00 3.46
2177 7958 0.832135 ACCGAGGCAGACAAGGAAGA 60.832 55.000 0.00 0.00 0.00 2.87
2178 7959 0.539051 CCGAGGCAGACAAGGAAGAT 59.461 55.000 0.00 0.00 0.00 2.40
2200 7993 1.032014 GTTGGACAGCAACACCACAT 58.968 50.000 0.00 0.00 33.20 3.21
2219 8012 5.278808 CCACATCATTATGGGAATGCTTCAG 60.279 44.000 0.00 0.00 38.98 3.02
2246 8039 3.730761 GGTGCTTGACCTGCGCTG 61.731 66.667 9.73 8.47 42.25 5.18
2333 8126 2.665165 TGTGATGGGTGCTGAAAACTT 58.335 42.857 0.00 0.00 0.00 2.66
2359 8152 3.573558 GCCATTTGCGAGGACGAA 58.426 55.556 0.00 0.00 42.66 3.85
2406 8199 2.576615 ACAAAGTCCACCTGCTTCTTC 58.423 47.619 0.00 0.00 0.00 2.87
2407 8200 2.092429 ACAAAGTCCACCTGCTTCTTCA 60.092 45.455 0.00 0.00 0.00 3.02
2408 8201 2.551459 CAAAGTCCACCTGCTTCTTCAG 59.449 50.000 0.00 0.00 0.00 3.02
2464 8263 8.109634 TGGAGCTTCTAGTATTTTCAGGAAATT 58.890 33.333 0.00 0.00 38.80 1.82
2467 8266 9.397280 AGCTTCTAGTATTTTCAGGAAATTACC 57.603 33.333 16.91 6.72 38.80 2.85
2470 8269 9.595823 TTCTAGTATTTTCAGGAAATTACCTCG 57.404 33.333 16.91 9.89 38.80 4.63
2476 8275 5.934935 TTCAGGAAATTACCTCGAACAAC 57.065 39.130 0.00 0.00 38.32 3.32
2482 8281 4.419522 AATTACCTCGAACAACACATGC 57.580 40.909 0.00 0.00 0.00 4.06
2483 8282 2.831685 TACCTCGAACAACACATGCT 57.168 45.000 0.00 0.00 0.00 3.79
2495 8294 5.248640 ACAACACATGCTAAGCTTATCTGT 58.751 37.500 6.64 8.08 0.00 3.41
2521 8320 2.096218 GCCAGCAACAGTCGACTTAAAG 60.096 50.000 17.26 7.25 0.00 1.85
2530 8329 4.449068 ACAGTCGACTTAAAGCTGTCATTG 59.551 41.667 17.26 2.57 35.78 2.82
2598 8397 8.627403 TGCAAAGAATTGGAGAATCTATTCATC 58.373 33.333 5.55 0.95 38.04 2.92
2614 8413 8.948631 TCTATTCATCAAAGGATAGTTGTCAC 57.051 34.615 0.00 0.00 30.87 3.67
2617 8416 8.641498 ATTCATCAAAGGATAGTTGTCACTTT 57.359 30.769 0.00 0.00 34.06 2.66
2619 8418 9.567776 TTCATCAAAGGATAGTTGTCACTTTTA 57.432 29.630 0.00 0.00 34.06 1.52
2621 8420 7.979444 TCAAAGGATAGTTGTCACTTTTAGG 57.021 36.000 0.00 0.00 34.06 2.69
2624 8423 3.945921 GGATAGTTGTCACTTTTAGGGGC 59.054 47.826 0.00 0.00 34.06 5.80
2625 8424 4.324331 GGATAGTTGTCACTTTTAGGGGCT 60.324 45.833 0.00 0.00 34.06 5.19
2626 8425 2.863809 AGTTGTCACTTTTAGGGGCTG 58.136 47.619 0.00 0.00 0.00 4.85
2627 8426 1.269723 GTTGTCACTTTTAGGGGCTGC 59.730 52.381 0.00 0.00 0.00 5.25
2628 8427 0.251165 TGTCACTTTTAGGGGCTGCC 60.251 55.000 11.05 11.05 0.00 4.85
2629 8428 0.038310 GTCACTTTTAGGGGCTGCCT 59.962 55.000 19.68 1.54 0.00 4.75
2709 8508 1.918262 TCACTCCCCAAGCAGATCATT 59.082 47.619 0.00 0.00 0.00 2.57
2784 8596 3.135994 GGAAGAGTTGCCGAAAGTGTTA 58.864 45.455 0.00 0.00 0.00 2.41
2831 8643 1.686110 CAGCTTACGGAGGGGAGGT 60.686 63.158 0.00 0.00 0.00 3.85
2836 8648 0.032813 TTACGGAGGGGAGGTACCAG 60.033 60.000 15.94 0.00 41.20 4.00
2863 8675 5.046735 GTGCATCCACATACTGATCTATCCT 60.047 44.000 0.00 0.00 41.67 3.24
2872 8684 1.620819 CTGATCTATCCTTCCACCGGG 59.379 57.143 6.32 0.00 0.00 5.73
2879 8691 1.198759 TCCTTCCACCGGGAGAAAGG 61.199 60.000 16.71 16.71 46.01 3.11
2890 8702 3.440522 CCGGGAGAAAGGAGAAATGTTTC 59.559 47.826 0.00 0.00 37.45 2.78
2892 8704 4.762251 CGGGAGAAAGGAGAAATGTTTCTT 59.238 41.667 9.20 0.00 46.84 2.52
2893 8705 5.241728 CGGGAGAAAGGAGAAATGTTTCTTT 59.758 40.000 9.20 0.88 46.84 2.52
2894 8706 6.239036 CGGGAGAAAGGAGAAATGTTTCTTTT 60.239 38.462 9.20 7.05 46.84 2.27
2895 8707 6.925718 GGGAGAAAGGAGAAATGTTTCTTTTG 59.074 38.462 9.20 0.00 46.84 2.44
2896 8708 7.201911 GGGAGAAAGGAGAAATGTTTCTTTTGA 60.202 37.037 9.20 0.00 46.84 2.69
2897 8709 8.197439 GGAGAAAGGAGAAATGTTTCTTTTGAA 58.803 33.333 9.20 0.00 46.84 2.69
2898 8710 9.242477 GAGAAAGGAGAAATGTTTCTTTTGAAG 57.758 33.333 9.20 0.00 46.84 3.02
2899 8711 7.708322 AGAAAGGAGAAATGTTTCTTTTGAAGC 59.292 33.333 9.20 0.00 46.84 3.86
2907 8719 5.398603 TGTTTCTTTTGAAGCACCAGAAA 57.601 34.783 0.00 0.00 43.12 2.52
2908 8720 5.410067 TGTTTCTTTTGAAGCACCAGAAAG 58.590 37.500 0.00 0.00 43.12 2.62
2909 8721 5.184864 TGTTTCTTTTGAAGCACCAGAAAGA 59.815 36.000 0.00 0.00 43.12 2.52
2910 8722 5.913137 TTCTTTTGAAGCACCAGAAAGAA 57.087 34.783 15.50 15.50 41.42 2.52
2911 8723 5.505173 TCTTTTGAAGCACCAGAAAGAAG 57.495 39.130 0.00 0.00 34.46 2.85
2912 8724 5.192927 TCTTTTGAAGCACCAGAAAGAAGA 58.807 37.500 0.00 0.00 34.46 2.87
2913 8725 5.652014 TCTTTTGAAGCACCAGAAAGAAGAA 59.348 36.000 0.00 0.00 34.46 2.52
2914 8726 5.913137 TTTGAAGCACCAGAAAGAAGAAA 57.087 34.783 0.00 0.00 0.00 2.52
2915 8727 6.469782 TTTGAAGCACCAGAAAGAAGAAAT 57.530 33.333 0.00 0.00 0.00 2.17
2916 8728 5.443185 TGAAGCACCAGAAAGAAGAAATG 57.557 39.130 0.00 0.00 0.00 2.32
2917 8729 4.889409 TGAAGCACCAGAAAGAAGAAATGT 59.111 37.500 0.00 0.00 0.00 2.71
2918 8730 5.360714 TGAAGCACCAGAAAGAAGAAATGTT 59.639 36.000 0.00 0.00 0.00 2.71
2919 8731 5.444663 AGCACCAGAAAGAAGAAATGTTC 57.555 39.130 0.00 0.00 0.00 3.18
2932 8744 2.999185 AATGTTCAAGGGTGGATGGT 57.001 45.000 0.00 0.00 0.00 3.55
2973 8785 0.032017 GGCTCCTTAGGTCCCTCTCA 60.032 60.000 0.00 0.00 0.00 3.27
3028 8840 9.860898 TCATACATATTGATATCTGTACTGCAC 57.139 33.333 3.98 0.00 29.40 4.57
3039 8851 0.804989 GTACTGCACCTGATGTTGGC 59.195 55.000 0.00 0.00 0.00 4.52
3042 8854 4.120331 GCACCTGATGTTGGCGGC 62.120 66.667 0.00 0.00 0.00 6.53
3055 8867 2.747460 GCGGCAGCAACATCCAGA 60.747 61.111 3.18 0.00 44.35 3.86
3063 8875 2.486982 CAGCAACATCCAGAGAACAAGG 59.513 50.000 0.00 0.00 0.00 3.61
3077 8889 5.598830 AGAGAACAAGGAGTGACAAACTAGA 59.401 40.000 0.00 0.00 40.07 2.43
3095 8907 3.641434 AGAGCAAGTCCAACAGCATAT 57.359 42.857 0.00 0.00 0.00 1.78
3132 8944 3.129638 ACTCGAAGTACAGAGATGCCTTC 59.870 47.826 16.45 0.00 37.87 3.46
3140 8952 0.473326 AGAGATGCCTTCAGGGATGC 59.527 55.000 4.29 0.00 46.79 3.91
3186 8998 1.192146 ACTGCCCCGTGCTAGAGAAA 61.192 55.000 0.00 0.00 42.00 2.52
3188 9000 0.107703 TGCCCCGTGCTAGAGAAATG 60.108 55.000 0.00 0.00 42.00 2.32
3189 9001 0.815615 GCCCCGTGCTAGAGAAATGG 60.816 60.000 0.00 0.00 36.87 3.16
3193 9005 1.009829 CGTGCTAGAGAAATGGTGGC 58.990 55.000 0.00 0.00 0.00 5.01
3196 9008 2.357009 GTGCTAGAGAAATGGTGGCATG 59.643 50.000 0.00 0.00 0.00 4.06
3199 9011 0.040058 AGAGAAATGGTGGCATGCCA 59.960 50.000 35.59 35.59 45.02 4.92
3213 9025 5.196695 TGGCATGCCAACTATACATGTTTA 58.803 37.500 36.95 7.62 44.12 2.01
3230 9042 7.491682 ACATGTTTAATAAAGGTGATGATGCC 58.508 34.615 0.00 0.00 0.00 4.40
3234 9046 0.465460 TAAAGGTGATGATGCCCGGC 60.465 55.000 1.04 1.04 0.00 6.13
3263 9075 1.134461 CAGACTCTTGGAGGATGCTGG 60.134 57.143 0.00 0.00 33.35 4.85
3276 9088 1.069358 GATGCTGGAGGTGCTAGTACC 59.931 57.143 21.41 21.41 41.17 3.34
3323 9135 1.463444 GTGTGACTTGGTTACATCGCC 59.537 52.381 0.00 0.00 34.74 5.54
3353 9165 7.704899 CGTGTATGATAACTTGTCCATCACTAA 59.295 37.037 0.00 0.00 31.83 2.24
3369 9181 2.563179 CACTAATATCCCTGGACCTCCG 59.437 54.545 0.00 0.00 39.43 4.63
3372 9184 0.178891 ATATCCCTGGACCTCCGCAT 60.179 55.000 0.00 0.00 39.43 4.73
3460 9275 2.766828 ACTGTTCCCTATGGCACTAGTC 59.233 50.000 0.00 0.00 0.00 2.59
3463 9278 1.414158 TCCCTATGGCACTAGTCTGC 58.586 55.000 0.00 0.00 36.33 4.26
3474 9289 1.341531 ACTAGTCTGCACAGCTTCGTT 59.658 47.619 0.00 0.00 0.00 3.85
3476 9291 0.940126 AGTCTGCACAGCTTCGTTTG 59.060 50.000 0.00 0.00 0.00 2.93
3477 9292 0.040958 GTCTGCACAGCTTCGTTTGG 60.041 55.000 0.00 0.00 0.00 3.28
3478 9293 1.370900 CTGCACAGCTTCGTTTGGC 60.371 57.895 0.00 0.00 0.00 4.52
3479 9294 1.789078 CTGCACAGCTTCGTTTGGCT 61.789 55.000 0.00 0.00 39.60 4.75
3519 9346 3.386078 CCAAGCTCCTCTCTGCACTATAA 59.614 47.826 0.00 0.00 0.00 0.98
3523 9350 4.898265 AGCTCCTCTCTGCACTATAAATCA 59.102 41.667 0.00 0.00 0.00 2.57
3524 9351 5.543405 AGCTCCTCTCTGCACTATAAATCAT 59.457 40.000 0.00 0.00 0.00 2.45
3531 9358 7.337938 TCTCTGCACTATAAATCATGGACAAA 58.662 34.615 0.00 0.00 0.00 2.83
3548 9375 4.033932 GGACAAACCAGTTGAAAAATGTGC 59.966 41.667 0.00 0.00 40.94 4.57
3549 9376 3.938334 ACAAACCAGTTGAAAAATGTGCC 59.062 39.130 0.00 0.00 40.94 5.01
3552 9379 4.058721 ACCAGTTGAAAAATGTGCCTTC 57.941 40.909 0.00 0.00 40.94 3.46
3554 9381 4.101430 ACCAGTTGAAAAATGTGCCTTCAT 59.899 37.500 0.00 0.00 40.94 2.57
3556 9383 6.183360 ACCAGTTGAAAAATGTGCCTTCATTA 60.183 34.615 0.00 0.00 40.94 1.90
3557 9384 6.705381 CCAGTTGAAAAATGTGCCTTCATTAA 59.295 34.615 0.00 0.00 40.94 1.40
3562 9389 3.874392 AATGTGCCTTCATTAACCTGC 57.126 42.857 0.00 0.00 36.44 4.85
3576 9403 3.433306 AACCTGCTGTTATTGCACCTA 57.567 42.857 0.00 0.00 34.69 3.08
3606 9433 1.086067 CCAGGCTCGTACATGTGCTG 61.086 60.000 9.11 4.06 0.00 4.41
3607 9434 1.448540 AGGCTCGTACATGTGCTGC 60.449 57.895 9.11 13.64 0.00 5.25
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
88 4468 7.106239 GGCTAGCTGCAGGATTTAAAGATATA 58.894 38.462 17.12 0.00 45.15 0.86
89 4469 5.942826 GGCTAGCTGCAGGATTTAAAGATAT 59.057 40.000 17.12 0.00 45.15 1.63
184 4570 1.168714 CCTTGCCTTCTCCTTTTCCG 58.831 55.000 0.00 0.00 0.00 4.30
194 4586 1.212935 TGGGCTCTATTCCTTGCCTTC 59.787 52.381 0.00 0.00 44.36 3.46
213 4606 5.406649 CCTTAGACAGAGTAGAAGCAAGTG 58.593 45.833 0.00 0.00 0.00 3.16
214 4607 4.081917 GCCTTAGACAGAGTAGAAGCAAGT 60.082 45.833 0.00 0.00 0.00 3.16
272 4665 5.234466 ACATGCTAGGAATGGATAACCTC 57.766 43.478 0.00 0.00 35.52 3.85
430 6079 7.172532 CACAAGCAGATTTAGTACAGGTGTAAA 59.827 37.037 0.00 0.00 31.52 2.01
538 6210 3.129813 GCAATCTCCATGCTCATTTGTCA 59.870 43.478 0.00 0.00 40.64 3.58
676 6373 7.750229 ATATAACATGCAGAATGGAACGAAT 57.250 32.000 0.00 0.00 42.43 3.34
680 6377 7.017645 CGCTTATATAACATGCAGAATGGAAC 58.982 38.462 0.00 0.00 42.43 3.62
841 6567 7.388776 GGCAATATTCTGATGCATGACTAACTA 59.611 37.037 2.46 0.00 41.80 2.24
1011 6746 4.310769 CAAGTTCAACGAGAATCCTGTCT 58.689 43.478 0.00 0.00 38.76 3.41
1064 6805 3.387962 TCCCAGCCATCAAAGTAGATCT 58.612 45.455 0.00 0.00 0.00 2.75
1065 6806 3.845781 TCCCAGCCATCAAAGTAGATC 57.154 47.619 0.00 0.00 0.00 2.75
1137 6878 3.427233 GCCTCATTGACTGCTCATTTGAC 60.427 47.826 0.00 0.00 0.00 3.18
1148 6889 0.252479 CTCTGCAGGCCTCATTGACT 59.748 55.000 15.13 0.00 0.00 3.41
1166 6907 5.046878 TGGATGATTTTCTCAAATTGCAGCT 60.047 36.000 0.00 0.00 37.44 4.24
1173 6914 8.033038 CAGTCAATGTGGATGATTTTCTCAAAT 58.967 33.333 0.00 0.00 37.44 2.32
1281 7022 3.703001 TCCTCCTCATCTTGTTTGTCC 57.297 47.619 0.00 0.00 0.00 4.02
1395 7140 1.927487 TGCTTCCATTGTGCAGGATT 58.073 45.000 0.00 0.00 33.10 3.01
1508 7253 2.301296 ACACTGTCTGTCATCTTGGGAG 59.699 50.000 0.00 0.00 0.00 4.30
1530 7275 4.754114 ACATCTGTTGTTCTGCTCTTCTTC 59.246 41.667 0.00 0.00 33.74 2.87
1531 7276 4.712476 ACATCTGTTGTTCTGCTCTTCTT 58.288 39.130 0.00 0.00 33.74 2.52
1532 7277 4.348863 ACATCTGTTGTTCTGCTCTTCT 57.651 40.909 0.00 0.00 33.74 2.85
1577 7325 1.670949 ATGCTCACGTGGATCTCGCT 61.671 55.000 17.00 0.00 0.00 4.93
1595 7343 4.876107 CCTCACGCACTAAATAGAACCAAT 59.124 41.667 0.00 0.00 0.00 3.16
1602 7350 2.101582 AGCCTCCTCACGCACTAAATAG 59.898 50.000 0.00 0.00 0.00 1.73
1633 7381 3.019564 AGTGACCATGCTTATTGAAGGC 58.980 45.455 0.00 0.00 32.84 4.35
1678 7435 6.693315 AAGTGCATACAAAACACAGTTAGT 57.307 33.333 0.00 0.00 36.76 2.24
1681 7438 8.391075 AGTATAAGTGCATACAAAACACAGTT 57.609 30.769 0.00 0.00 36.76 3.16
1703 7460 2.169769 CGAAGGCCAAACCAGGATAGTA 59.830 50.000 5.01 0.00 43.14 1.82
1706 7463 0.393808 GCGAAGGCCAAACCAGGATA 60.394 55.000 5.01 0.00 43.14 2.59
1714 7471 1.202114 GTCATTGATGCGAAGGCCAAA 59.798 47.619 5.01 0.00 38.85 3.28
1721 7478 4.122046 CCAGTCATAGTCATTGATGCGAA 58.878 43.478 0.00 0.00 0.00 4.70
1730 7493 3.134804 GTGGTTAGCCCAGTCATAGTCAT 59.865 47.826 0.00 0.00 46.45 3.06
1748 7511 2.642807 ACCCAATAGTTACTGCTGTGGT 59.357 45.455 6.48 0.00 0.00 4.16
1858 7624 0.834612 TCCTTGTTGAGTCGGGTGTT 59.165 50.000 0.00 0.00 0.00 3.32
1875 7641 3.484407 AGCCATTACTGCTGATTCATCC 58.516 45.455 0.00 0.00 37.76 3.51
1917 7686 0.533755 AATACGGCATGAGCTCAGCC 60.534 55.000 31.32 31.32 44.89 4.85
1925 7694 2.112190 TGGTAGTCCAATACGGCATGA 58.888 47.619 0.00 0.00 41.25 3.07
1940 7709 5.263185 CAAAAGTCGAAGTTGTTGTGGTAG 58.737 41.667 0.00 0.00 0.00 3.18
1942 7711 3.119637 CCAAAAGTCGAAGTTGTTGTGGT 60.120 43.478 0.00 0.00 0.00 4.16
1956 7725 4.082733 GGGCTCACTACAAATCCAAAAGTC 60.083 45.833 0.00 0.00 0.00 3.01
1961 7730 3.245229 ACATGGGCTCACTACAAATCCAA 60.245 43.478 0.00 0.00 0.00 3.53
1992 7761 0.169451 GCCGAAACGTGTTATTGGGG 59.831 55.000 0.00 0.00 0.00 4.96
1996 7765 2.222445 GTGAGTGCCGAAACGTGTTATT 59.778 45.455 0.00 0.00 0.00 1.40
2081 7850 1.687368 GGAATCTCAGGCCTTGGCAAT 60.687 52.381 0.00 0.00 0.00 3.56
2088 7857 1.063183 GCCATAGGAATCTCAGGCCT 58.937 55.000 0.00 0.00 37.20 5.19
2112 7881 2.067932 TTGGGAGGTCTTGGCAGTGG 62.068 60.000 0.00 0.00 0.00 4.00
2129 7898 1.728971 GATCTGTGGTGCTTCTCGTTG 59.271 52.381 0.00 0.00 0.00 4.10
2160 7935 1.205655 TCATCTTCCTTGTCTGCCTCG 59.794 52.381 0.00 0.00 0.00 4.63
2333 8126 0.322366 TCGCAAATGGCTCATGTCCA 60.322 50.000 10.89 10.89 41.67 4.02
2406 8199 0.583438 CTGAGAACACGTGGTTGCTG 59.417 55.000 21.57 9.57 40.63 4.41
2407 8200 0.464036 TCTGAGAACACGTGGTTGCT 59.536 50.000 21.57 7.62 40.63 3.91
2408 8201 1.295792 TTCTGAGAACACGTGGTTGC 58.704 50.000 21.57 10.07 40.63 4.17
2413 8209 4.776743 CTTTCCATTTCTGAGAACACGTG 58.223 43.478 15.48 15.48 0.00 4.49
2450 8249 8.508875 GTTGTTCGAGGTAATTTCCTGAAAATA 58.491 33.333 8.56 0.00 36.54 1.40
2451 8250 7.013846 TGTTGTTCGAGGTAATTTCCTGAAAAT 59.986 33.333 8.56 0.00 39.30 1.82
2464 8263 2.831685 AGCATGTGTTGTTCGAGGTA 57.168 45.000 0.00 0.00 0.00 3.08
2467 8266 2.738846 AGCTTAGCATGTGTTGTTCGAG 59.261 45.455 7.07 0.00 0.00 4.04
2470 8269 6.128172 ACAGATAAGCTTAGCATGTGTTGTTC 60.128 38.462 22.80 5.93 0.00 3.18
2476 8275 4.872124 TGACACAGATAAGCTTAGCATGTG 59.128 41.667 30.78 30.78 41.68 3.21
2482 8281 4.118410 CTGGCTGACACAGATAAGCTTAG 58.882 47.826 12.54 0.96 38.20 2.18
2483 8282 3.679917 GCTGGCTGACACAGATAAGCTTA 60.680 47.826 8.99 8.99 38.20 3.09
2495 8294 1.595109 CGACTGTTGCTGGCTGACA 60.595 57.895 0.00 0.00 0.00 3.58
2521 8320 3.441222 TCACATCCATCAACAATGACAGC 59.559 43.478 0.00 0.00 38.69 4.40
2530 8329 5.913137 TTTAACCCATCACATCCATCAAC 57.087 39.130 0.00 0.00 0.00 3.18
2589 8388 8.762645 AGTGACAACTATCCTTTGATGAATAGA 58.237 33.333 0.00 0.00 33.79 1.98
2598 8397 6.151144 CCCCTAAAAGTGACAACTATCCTTTG 59.849 42.308 0.00 0.00 34.77 2.77
2613 8412 0.256177 GCTAGGCAGCCCCTAAAAGT 59.744 55.000 8.22 0.00 45.50 2.66
2614 8413 3.102090 GCTAGGCAGCCCCTAAAAG 57.898 57.895 8.22 0.00 45.50 2.27
2624 8423 0.685785 TGAGAGGTCCAGCTAGGCAG 60.686 60.000 0.00 0.00 37.29 4.85
2625 8424 0.685785 CTGAGAGGTCCAGCTAGGCA 60.686 60.000 0.00 0.00 37.29 4.75
2626 8425 1.398958 CCTGAGAGGTCCAGCTAGGC 61.399 65.000 0.00 0.00 37.29 3.93
2627 8426 1.398958 GCCTGAGAGGTCCAGCTAGG 61.399 65.000 0.00 0.00 37.80 3.02
2628 8427 0.685785 TGCCTGAGAGGTCCAGCTAG 60.686 60.000 0.00 0.00 37.80 3.42
2629 8428 0.972983 GTGCCTGAGAGGTCCAGCTA 60.973 60.000 0.00 0.00 37.80 3.32
2709 8508 1.812525 CTTCTCGCAGCCTAGCAGA 59.187 57.895 0.00 0.00 0.00 4.26
2784 8596 6.395426 AATGAAGATGTTGTGTCAATGTGT 57.605 33.333 0.00 0.00 0.00 3.72
2831 8643 2.877097 ATGTGGATGCACAACTGGTA 57.123 45.000 24.45 0.00 38.69 3.25
2836 8648 4.194640 AGATCAGTATGTGGATGCACAAC 58.805 43.478 24.45 20.62 38.69 3.32
2851 8663 2.320781 CCGGTGGAAGGATAGATCAGT 58.679 52.381 0.00 0.00 0.00 3.41
2863 8675 0.178915 TCTCCTTTCTCCCGGTGGAA 60.179 55.000 0.00 0.95 41.17 3.53
2872 8684 9.242477 CTTCAAAAGAAACATTTCTCCTTTCTC 57.758 33.333 7.32 0.00 46.22 2.87
2879 8691 6.042143 TGGTGCTTCAAAAGAAACATTTCTC 58.958 36.000 7.32 0.00 46.22 2.87
2890 8702 5.505173 TCTTCTTTCTGGTGCTTCAAAAG 57.495 39.130 0.00 0.00 0.00 2.27
2891 8703 5.913137 TTCTTCTTTCTGGTGCTTCAAAA 57.087 34.783 0.00 0.00 0.00 2.44
2892 8704 5.913137 TTTCTTCTTTCTGGTGCTTCAAA 57.087 34.783 0.00 0.00 0.00 2.69
2893 8705 5.360714 ACATTTCTTCTTTCTGGTGCTTCAA 59.639 36.000 0.00 0.00 0.00 2.69
2894 8706 4.889409 ACATTTCTTCTTTCTGGTGCTTCA 59.111 37.500 0.00 0.00 0.00 3.02
2895 8707 5.444663 ACATTTCTTCTTTCTGGTGCTTC 57.555 39.130 0.00 0.00 0.00 3.86
2896 8708 5.360714 TGAACATTTCTTCTTTCTGGTGCTT 59.639 36.000 0.00 0.00 0.00 3.91
2897 8709 4.889409 TGAACATTTCTTCTTTCTGGTGCT 59.111 37.500 0.00 0.00 0.00 4.40
2898 8710 5.186996 TGAACATTTCTTCTTTCTGGTGC 57.813 39.130 0.00 0.00 0.00 5.01
2899 8711 6.211515 CCTTGAACATTTCTTCTTTCTGGTG 58.788 40.000 0.00 0.00 0.00 4.17
2900 8712 5.302823 CCCTTGAACATTTCTTCTTTCTGGT 59.697 40.000 0.00 0.00 0.00 4.00
2901 8713 5.302823 ACCCTTGAACATTTCTTCTTTCTGG 59.697 40.000 0.00 0.00 0.00 3.86
2902 8714 6.211515 CACCCTTGAACATTTCTTCTTTCTG 58.788 40.000 0.00 0.00 0.00 3.02
2903 8715 5.302823 CCACCCTTGAACATTTCTTCTTTCT 59.697 40.000 0.00 0.00 0.00 2.52
2904 8716 5.301805 TCCACCCTTGAACATTTCTTCTTTC 59.698 40.000 0.00 0.00 0.00 2.62
2905 8717 5.208121 TCCACCCTTGAACATTTCTTCTTT 58.792 37.500 0.00 0.00 0.00 2.52
2906 8718 4.803452 TCCACCCTTGAACATTTCTTCTT 58.197 39.130 0.00 0.00 0.00 2.52
2907 8719 4.453480 TCCACCCTTGAACATTTCTTCT 57.547 40.909 0.00 0.00 0.00 2.85
2908 8720 4.082026 CCATCCACCCTTGAACATTTCTTC 60.082 45.833 0.00 0.00 0.00 2.87
2909 8721 3.834231 CCATCCACCCTTGAACATTTCTT 59.166 43.478 0.00 0.00 0.00 2.52
2910 8722 3.181418 ACCATCCACCCTTGAACATTTCT 60.181 43.478 0.00 0.00 0.00 2.52
2911 8723 3.056607 CACCATCCACCCTTGAACATTTC 60.057 47.826 0.00 0.00 0.00 2.17
2912 8724 2.899256 CACCATCCACCCTTGAACATTT 59.101 45.455 0.00 0.00 0.00 2.32
2913 8725 2.528564 CACCATCCACCCTTGAACATT 58.471 47.619 0.00 0.00 0.00 2.71
2914 8726 1.272648 CCACCATCCACCCTTGAACAT 60.273 52.381 0.00 0.00 0.00 2.71
2915 8727 0.112218 CCACCATCCACCCTTGAACA 59.888 55.000 0.00 0.00 0.00 3.18
2916 8728 0.404040 TCCACCATCCACCCTTGAAC 59.596 55.000 0.00 0.00 0.00 3.18
2917 8729 1.381867 ATCCACCATCCACCCTTGAA 58.618 50.000 0.00 0.00 0.00 2.69
2918 8730 1.381867 AATCCACCATCCACCCTTGA 58.618 50.000 0.00 0.00 0.00 3.02
2919 8731 1.826720 CAAATCCACCATCCACCCTTG 59.173 52.381 0.00 0.00 0.00 3.61
2932 8744 3.421919 TGCATCTGTGAGACAAATCCA 57.578 42.857 0.00 0.00 0.00 3.41
2992 8804 9.311916 GATATCAATATGTATGACTGAGGCTTC 57.688 37.037 0.00 0.00 0.00 3.86
3002 8814 9.860898 GTGCAGTACAGATATCAATATGTATGA 57.139 33.333 5.32 0.00 40.78 2.15
3028 8840 3.818787 GCTGCCGCCAACATCAGG 61.819 66.667 0.00 0.00 0.00 3.86
3039 8851 0.674581 TTCTCTGGATGTTGCTGCCG 60.675 55.000 0.00 0.00 0.00 5.69
3042 8854 2.486982 CCTTGTTCTCTGGATGTTGCTG 59.513 50.000 0.00 0.00 0.00 4.41
3054 8866 5.844004 TCTAGTTTGTCACTCCTTGTTCTC 58.156 41.667 0.00 0.00 36.88 2.87
3055 8867 5.740513 GCTCTAGTTTGTCACTCCTTGTTCT 60.741 44.000 0.00 0.00 36.88 3.01
3063 8875 3.991121 GGACTTGCTCTAGTTTGTCACTC 59.009 47.826 0.00 0.00 36.88 3.51
3077 8889 4.848357 ACTTATATGCTGTTGGACTTGCT 58.152 39.130 0.00 0.00 0.00 3.91
3095 8907 7.094248 TGTACTTCGAGTGCATTAAGGTACTTA 60.094 37.037 12.12 1.83 40.74 2.24
3140 8952 1.303888 ATCACTGCTGCAACTGGGG 60.304 57.895 3.02 0.00 0.00 4.96
3175 8987 2.113860 TGCCACCATTTCTCTAGCAC 57.886 50.000 0.00 0.00 0.00 4.40
3176 8988 2.646930 CATGCCACCATTTCTCTAGCA 58.353 47.619 0.00 0.00 0.00 3.49
3178 8990 1.952296 GGCATGCCACCATTTCTCTAG 59.048 52.381 32.08 0.00 35.81 2.43
3181 8993 2.582272 TGGCATGCCACCATTTCTC 58.418 52.632 35.59 5.78 41.89 2.87
3196 9008 9.730420 CACCTTTATTAAACATGTATAGTTGGC 57.270 33.333 0.00 0.00 0.00 4.52
3213 9025 2.586425 CCGGGCATCATCACCTTTATT 58.414 47.619 0.00 0.00 0.00 1.40
3234 9046 0.607489 CCAAGAGTCTGTTGCCCTGG 60.607 60.000 4.18 0.00 0.00 4.45
3263 9075 1.187087 AGCACTGGTACTAGCACCTC 58.813 55.000 13.44 0.83 39.50 3.85
3303 9115 1.463444 GGCGATGTAACCAAGTCACAC 59.537 52.381 0.00 0.00 0.00 3.82
3323 9135 3.000078 GGACAAGTTATCATACACGTGCG 60.000 47.826 17.22 4.51 0.00 5.34
3353 9165 0.178891 ATGCGGAGGTCCAGGGATAT 60.179 55.000 0.00 0.00 35.14 1.63
3369 9181 2.842496 TCTATCCCATCCTGATCCATGC 59.158 50.000 0.00 0.00 0.00 4.06
3372 9184 3.931241 AGTCTATCCCATCCTGATCCA 57.069 47.619 0.00 0.00 0.00 3.41
3448 9263 1.134699 GCTGTGCAGACTAGTGCCATA 60.135 52.381 0.00 0.00 43.28 2.74
3460 9275 1.370900 GCCAAACGAAGCTGTGCAG 60.371 57.895 0.00 0.00 0.00 4.41
3474 9289 1.766494 CCCATAATGTCTGCAGCCAA 58.234 50.000 9.47 0.00 0.00 4.52
3476 9291 0.752743 TGCCCATAATGTCTGCAGCC 60.753 55.000 9.47 0.00 0.00 4.85
3477 9292 1.268899 GATGCCCATAATGTCTGCAGC 59.731 52.381 9.47 4.92 35.10 5.25
3478 9293 1.884579 GGATGCCCATAATGTCTGCAG 59.115 52.381 7.63 7.63 35.10 4.41
3479 9294 1.214923 TGGATGCCCATAATGTCTGCA 59.785 47.619 0.00 0.00 37.58 4.41
3480 9295 1.985473 TGGATGCCCATAATGTCTGC 58.015 50.000 0.00 0.00 37.58 4.26
3481 9296 2.295349 GCTTGGATGCCCATAATGTCTG 59.705 50.000 0.00 0.00 43.12 3.51
3482 9297 2.176364 AGCTTGGATGCCCATAATGTCT 59.824 45.455 0.00 0.00 43.12 3.41
3519 9346 5.867903 TTTCAACTGGTTTGTCCATGATT 57.132 34.783 0.00 0.00 46.12 2.57
3523 9350 5.816777 CACATTTTTCAACTGGTTTGTCCAT 59.183 36.000 0.00 0.00 46.12 3.41
3524 9351 5.174395 CACATTTTTCAACTGGTTTGTCCA 58.826 37.500 0.00 0.00 45.01 4.02
3531 9358 3.450457 TGAAGGCACATTTTTCAACTGGT 59.550 39.130 0.00 0.00 0.00 4.00
3544 9371 2.161855 CAGCAGGTTAATGAAGGCACA 58.838 47.619 0.00 0.00 0.00 4.57
3548 9375 5.105797 TGCAATAACAGCAGGTTAATGAAGG 60.106 40.000 16.16 2.37 42.82 3.46
3549 9376 5.801947 GTGCAATAACAGCAGGTTAATGAAG 59.198 40.000 16.16 3.88 42.82 3.02
3552 9379 4.158394 AGGTGCAATAACAGCAGGTTAATG 59.842 41.667 10.38 10.38 44.70 1.90
3554 9381 3.761897 AGGTGCAATAACAGCAGGTTAA 58.238 40.909 5.28 0.00 44.70 2.01
3556 9383 2.292828 AGGTGCAATAACAGCAGGTT 57.707 45.000 0.00 0.00 43.63 3.50
3557 9384 2.571653 TCTAGGTGCAATAACAGCAGGT 59.428 45.455 0.00 0.00 43.63 4.00
3562 9389 3.935203 CAGTGGTCTAGGTGCAATAACAG 59.065 47.826 0.00 0.00 0.00 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.