Multiple sequence alignment - TraesCS6D01G025100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G025100 chr6D 100.000 3387 0 0 1 3387 9539848 9543234 0.000000e+00 6255.0
1 TraesCS6D01G025100 chr6D 76.211 227 40 8 1088 1307 9247007 9246788 1.290000e-19 108.0
2 TraesCS6D01G025100 chr6B 92.700 863 57 1 1307 2163 17494827 17495689 0.000000e+00 1240.0
3 TraesCS6D01G025100 chr6B 80.615 846 125 31 39 869 6214438 6213617 4.800000e-173 617.0
4 TraesCS6D01G025100 chr6B 88.106 454 19 8 863 1312 17493118 17493540 1.080000e-139 507.0
5 TraesCS6D01G025100 chr6B 77.123 883 138 36 1088 1948 17225855 17225015 1.430000e-123 453.0
6 TraesCS6D01G025100 chr6B 94.167 240 10 2 2148 2387 17495740 17495975 2.480000e-96 363.0
7 TraesCS6D01G025100 chr6B 90.845 142 12 1 2451 2592 17496470 17496610 4.460000e-44 189.0
8 TraesCS6D01G025100 chr3A 82.634 858 127 17 31 869 315537277 315538131 0.000000e+00 739.0
9 TraesCS6D01G025100 chr3D 82.670 854 121 21 31 869 36629755 36630596 0.000000e+00 732.0
10 TraesCS6D01G025100 chr3D 81.317 835 122 27 49 871 421708652 421709464 0.000000e+00 647.0
11 TraesCS6D01G025100 chr4D 83.170 814 112 22 70 869 111143942 111143140 0.000000e+00 721.0
12 TraesCS6D01G025100 chr1A 82.545 825 121 19 59 869 376143126 376143941 0.000000e+00 704.0
13 TraesCS6D01G025100 chr4B 83.453 695 99 16 118 806 172324499 172323815 1.710000e-177 632.0
14 TraesCS6D01G025100 chr5A 80.456 834 141 19 52 869 156951260 156950433 4.800000e-173 617.0
15 TraesCS6D01G025100 chr5D 80.048 832 140 21 55 869 133672167 133671345 8.090000e-166 593.0
16 TraesCS6D01G025100 chr6A 85.563 568 37 14 2655 3211 10506993 10507526 1.370000e-153 553.0
17 TraesCS6D01G025100 chr6A 95.101 347 12 2 1954 2297 10502434 10502778 2.970000e-150 542.0
18 TraesCS6D01G025100 chr6A 72.182 967 180 54 1085 2025 11274544 11275447 2.650000e-51 213.0
19 TraesCS6D01G025100 chr6A 90.323 124 8 2 2451 2571 10506799 10506921 3.500000e-35 159.0
20 TraesCS6D01G025100 chr1B 90.816 98 9 0 34 131 616613106 616613009 7.630000e-27 132.0
21 TraesCS6D01G025100 chr5B 91.667 48 4 0 823 870 79563413 79563366 2.180000e-07 67.6
22 TraesCS6D01G025100 chr4A 88.679 53 3 3 830 879 720747423 720747371 1.010000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G025100 chr6D 9539848 9543234 3386 False 6255.00 6255 100.0000 1 3387 1 chr6D.!!$F1 3386
1 TraesCS6D01G025100 chr6B 6213617 6214438 821 True 617.00 617 80.6150 39 869 1 chr6B.!!$R1 830
2 TraesCS6D01G025100 chr6B 17493118 17496610 3492 False 574.75 1240 91.4545 863 2592 4 chr6B.!!$F1 1729
3 TraesCS6D01G025100 chr6B 17225015 17225855 840 True 453.00 453 77.1230 1088 1948 1 chr6B.!!$R2 860
4 TraesCS6D01G025100 chr3A 315537277 315538131 854 False 739.00 739 82.6340 31 869 1 chr3A.!!$F1 838
5 TraesCS6D01G025100 chr3D 36629755 36630596 841 False 732.00 732 82.6700 31 869 1 chr3D.!!$F1 838
6 TraesCS6D01G025100 chr3D 421708652 421709464 812 False 647.00 647 81.3170 49 871 1 chr3D.!!$F2 822
7 TraesCS6D01G025100 chr4D 111143140 111143942 802 True 721.00 721 83.1700 70 869 1 chr4D.!!$R1 799
8 TraesCS6D01G025100 chr1A 376143126 376143941 815 False 704.00 704 82.5450 59 869 1 chr1A.!!$F1 810
9 TraesCS6D01G025100 chr4B 172323815 172324499 684 True 632.00 632 83.4530 118 806 1 chr4B.!!$R1 688
10 TraesCS6D01G025100 chr5A 156950433 156951260 827 True 617.00 617 80.4560 52 869 1 chr5A.!!$R1 817
11 TraesCS6D01G025100 chr5D 133671345 133672167 822 True 593.00 593 80.0480 55 869 1 chr5D.!!$R1 814
12 TraesCS6D01G025100 chr6A 10506799 10507526 727 False 356.00 553 87.9430 2451 3211 2 chr6A.!!$F3 760
13 TraesCS6D01G025100 chr6A 11274544 11275447 903 False 213.00 213 72.1820 1085 2025 1 chr6A.!!$F2 940

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
101 103 0.539669 AAAAGCCCCTCCGTTTCTGG 60.540 55.0 0.0 0.00 0.00 3.86 F
247 254 0.688087 TTTTGCCGAAAACCCCCTGT 60.688 50.0 0.0 0.00 0.00 4.00 F
1057 1099 0.171231 TCGCATCGATCGATCCATCC 59.829 55.0 27.2 12.15 31.62 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1056 1098 0.109551 CGAGATCGGTCGATGATGGG 60.110 60.0 10.77 0.00 42.85 4.00 R
1733 3082 0.169009 GAGCATGGTTTCGAAGGTGC 59.831 55.0 14.36 14.36 0.00 5.01 R
2414 3843 0.036577 GAGCAGAGGAAGAGCTTGCA 60.037 55.0 7.03 0.00 39.02 4.08 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
94 95 1.181786 TTTGCATAAAAGCCCCTCCG 58.818 50.000 0.00 0.00 0.00 4.63
101 103 0.539669 AAAAGCCCCTCCGTTTCTGG 60.540 55.000 0.00 0.00 0.00 3.86
247 254 0.688087 TTTTGCCGAAAACCCCCTGT 60.688 50.000 0.00 0.00 0.00 4.00
258 265 2.487746 ACCCCCTGTGATTTTGGTTT 57.512 45.000 0.00 0.00 0.00 3.27
259 266 2.770447 ACCCCCTGTGATTTTGGTTTT 58.230 42.857 0.00 0.00 0.00 2.43
438 456 7.319646 TCCATTAACCATGTTTAAATGCTGTC 58.680 34.615 0.00 0.00 0.00 3.51
505 525 8.601845 AAACCCTAACTTCAATTTTAACATGC 57.398 30.769 0.00 0.00 0.00 4.06
606 629 7.244898 TGCTATTTACGATGCAACGTTAATTT 58.755 30.769 29.57 16.01 44.14 1.82
613 636 6.375377 ACGATGCAACGTTAATTTGTATTGT 58.625 32.000 16.93 13.50 44.14 2.71
620 643 7.901377 GCAACGTTAATTTGTATTGTACGATCT 59.099 33.333 0.00 0.00 36.97 2.75
633 656 9.851043 GTATTGTACGATCTATCTTTCTTTTGC 57.149 33.333 0.00 0.00 0.00 3.68
748 774 6.394345 AGAGTGGAAAGAAGGATAAATGGT 57.606 37.500 0.00 0.00 0.00 3.55
751 777 8.390921 AGAGTGGAAAGAAGGATAAATGGTAAA 58.609 33.333 0.00 0.00 0.00 2.01
789 818 3.628032 TGTTGAAATAAAGGACGTGCACA 59.372 39.130 18.64 0.00 0.00 4.57
794 823 7.851387 TGAAATAAAGGACGTGCACATATTA 57.149 32.000 18.64 8.59 0.00 0.98
806 835 5.186198 GTGCACATATTAGGGTCTTGAGTT 58.814 41.667 13.17 0.00 0.00 3.01
807 836 5.294552 GTGCACATATTAGGGTCTTGAGTTC 59.705 44.000 13.17 0.00 0.00 3.01
808 837 4.816925 GCACATATTAGGGTCTTGAGTTCC 59.183 45.833 0.00 0.00 0.00 3.62
810 839 4.960469 ACATATTAGGGTCTTGAGTTCCGA 59.040 41.667 0.00 0.00 0.00 4.55
820 849 6.103997 GGTCTTGAGTTCCGATTATTGTGTA 58.896 40.000 0.00 0.00 0.00 2.90
826 860 5.953183 AGTTCCGATTATTGTGTACGTGTA 58.047 37.500 0.00 0.00 0.00 2.90
900 938 4.684724 ACTCTGGATTGTTCCTACTGGTA 58.315 43.478 0.00 0.00 43.07 3.25
901 939 4.466726 ACTCTGGATTGTTCCTACTGGTAC 59.533 45.833 0.00 0.00 43.07 3.34
902 940 3.446161 TCTGGATTGTTCCTACTGGTACG 59.554 47.826 0.00 0.00 43.07 3.67
903 941 3.167485 TGGATTGTTCCTACTGGTACGT 58.833 45.455 0.00 0.00 43.07 3.57
959 1001 3.763557 ACTCCCACCAAATTCCATCAT 57.236 42.857 0.00 0.00 0.00 2.45
1035 1077 4.498520 AGACACGAGGCGCATCGG 62.499 66.667 41.63 32.28 46.91 4.18
1047 1089 2.730976 CATCGGCGTCGCATCGAT 60.731 61.111 20.80 20.80 43.28 3.59
1048 1090 2.429236 ATCGGCGTCGCATCGATC 60.429 61.111 20.80 2.66 39.05 3.69
1049 1091 4.956537 TCGGCGTCGCATCGATCG 62.957 66.667 20.50 9.36 38.42 3.69
1050 1092 4.956537 CGGCGTCGCATCGATCGA 62.957 66.667 21.86 21.86 38.42 3.59
1051 1093 2.429236 GGCGTCGCATCGATCGAT 60.429 61.111 24.60 24.60 38.42 3.59
1052 1094 2.429351 GGCGTCGCATCGATCGATC 61.429 63.158 27.20 19.40 38.42 3.69
1053 1095 2.429351 GCGTCGCATCGATCGATCC 61.429 63.158 27.20 18.40 38.42 3.36
1054 1096 1.082104 CGTCGCATCGATCGATCCA 60.082 57.895 27.20 11.42 38.42 3.41
1055 1097 0.455126 CGTCGCATCGATCGATCCAT 60.455 55.000 27.20 9.87 38.42 3.41
1056 1098 1.263776 GTCGCATCGATCGATCCATC 58.736 55.000 27.20 14.97 38.42 3.51
1057 1099 0.171231 TCGCATCGATCGATCCATCC 59.829 55.000 27.20 12.15 31.62 3.51
1058 1100 0.803768 CGCATCGATCGATCCATCCC 60.804 60.000 27.20 10.56 31.62 3.85
1059 1101 0.247460 GCATCGATCGATCCATCCCA 59.753 55.000 27.20 0.00 31.62 4.37
1060 1102 1.134580 GCATCGATCGATCCATCCCAT 60.135 52.381 27.20 1.58 31.62 4.00
1061 1103 2.819115 CATCGATCGATCCATCCCATC 58.181 52.381 27.20 0.00 31.62 3.51
1062 1104 1.923356 TCGATCGATCCATCCCATCA 58.077 50.000 19.51 0.00 0.00 3.07
1063 1105 2.460669 TCGATCGATCCATCCCATCAT 58.539 47.619 19.51 0.00 0.00 2.45
1064 1106 2.428530 TCGATCGATCCATCCCATCATC 59.571 50.000 19.51 0.00 0.00 2.92
1065 1107 2.797439 CGATCGATCCATCCCATCATCG 60.797 54.545 19.51 0.70 39.60 3.84
1066 1108 1.923356 TCGATCCATCCCATCATCGA 58.077 50.000 0.00 0.00 43.63 3.59
1067 1109 1.546029 TCGATCCATCCCATCATCGAC 59.454 52.381 0.00 0.00 41.60 4.20
1145 1187 1.372997 CGTCGCTGCACAACTACCT 60.373 57.895 0.00 0.00 0.00 3.08
1183 1231 0.459934 CGTCTACTCGGAGGTCGTCT 60.460 60.000 10.23 0.00 40.32 4.18
1325 2665 1.615424 ACGCCTACCCCTTCATGGT 60.615 57.895 0.00 0.00 39.97 3.55
1451 2794 1.153429 GGTTCCCGGAGTTCATCGG 60.153 63.158 0.73 0.00 45.29 4.18
1509 2852 0.909610 TCATGTGGAGGGTGAGGGTC 60.910 60.000 0.00 0.00 0.00 4.46
1522 2865 4.097361 GGGTCACCCGGGAGAAGC 62.097 72.222 32.02 20.30 32.13 3.86
1702 3045 1.826054 ATGCTCGAGTCCTCCTCCG 60.826 63.158 15.13 0.00 36.82 4.63
1733 3082 3.917760 GGAGGACATCGAGCCCGG 61.918 72.222 0.00 0.00 36.24 5.73
1734 3083 4.593864 GAGGACATCGAGCCCGGC 62.594 72.222 0.00 0.00 36.24 6.13
1744 3093 3.894547 GAGCCCGGCACCTTCGAAA 62.895 63.158 13.15 0.00 0.00 3.46
1875 3236 2.113433 GGAGTGCGCCGAGAGACTA 61.113 63.158 4.18 0.00 0.00 2.59
1878 3239 1.062845 GTGCGCCGAGAGACTACTC 59.937 63.158 4.18 0.00 42.90 2.59
2051 3414 3.515286 GTCGCCGTCCATCCTCGA 61.515 66.667 0.00 0.00 0.00 4.04
2107 3470 2.393271 CAAGGAGTCTCTTGGCGATT 57.607 50.000 11.48 0.00 40.14 3.34
2113 3476 1.205893 AGTCTCTTGGCGATTCAGACC 59.794 52.381 0.00 0.00 35.10 3.85
2116 3479 2.427453 TCTCTTGGCGATTCAGACCTAC 59.573 50.000 0.00 0.00 0.00 3.18
2122 3485 3.321111 TGGCGATTCAGACCTACCTATTC 59.679 47.826 0.00 0.00 0.00 1.75
2214 3643 4.965283 TGGATGGAAACCCTAGGAATTT 57.035 40.909 11.48 10.54 0.00 1.82
2216 3645 5.022787 TGGATGGAAACCCTAGGAATTTTG 58.977 41.667 11.48 0.00 0.00 2.44
2284 3713 1.751437 AAGGAGAAAGGCGCATAACC 58.249 50.000 10.83 4.10 0.00 2.85
2296 3725 3.427863 GGCGCATAACCGTAGAATACTTC 59.572 47.826 10.83 0.00 40.12 3.01
2387 3816 5.356190 CAGCATGTATTTTGACTGTCCAGAT 59.644 40.000 5.17 0.00 0.00 2.90
2390 3819 7.611467 AGCATGTATTTTGACTGTCCAGATTAA 59.389 33.333 5.17 0.00 0.00 1.40
2401 3830 9.739276 TGACTGTCCAGATTAAATTTTCTATGT 57.261 29.630 5.17 0.00 0.00 2.29
2419 3848 9.929722 TTTCTATGTATAAATACGCTTTGCAAG 57.070 29.630 0.00 0.00 36.06 4.01
2433 3862 0.036577 TGCAAGCTCTTCCTCTGCTC 60.037 55.000 5.93 0.00 35.85 4.26
2434 3863 0.249955 GCAAGCTCTTCCTCTGCTCT 59.750 55.000 0.00 0.00 35.85 4.09
2435 3864 1.338960 GCAAGCTCTTCCTCTGCTCTT 60.339 52.381 0.00 0.00 35.85 2.85
2436 3865 2.620242 CAAGCTCTTCCTCTGCTCTTC 58.380 52.381 0.00 0.00 35.85 2.87
2437 3866 2.234414 CAAGCTCTTCCTCTGCTCTTCT 59.766 50.000 0.00 0.00 35.85 2.85
2438 3867 2.102578 AGCTCTTCCTCTGCTCTTCTC 58.897 52.381 0.00 0.00 30.41 2.87
2439 3868 1.824230 GCTCTTCCTCTGCTCTTCTCA 59.176 52.381 0.00 0.00 0.00 3.27
2442 3871 2.178580 CTTCCTCTGCTCTTCTCACCT 58.821 52.381 0.00 0.00 0.00 4.00
2444 3873 3.458044 TCCTCTGCTCTTCTCACCTAA 57.542 47.619 0.00 0.00 0.00 2.69
2445 3874 3.987745 TCCTCTGCTCTTCTCACCTAAT 58.012 45.455 0.00 0.00 0.00 1.73
2446 3875 4.357325 TCCTCTGCTCTTCTCACCTAATT 58.643 43.478 0.00 0.00 0.00 1.40
2447 3876 4.780021 TCCTCTGCTCTTCTCACCTAATTT 59.220 41.667 0.00 0.00 0.00 1.82
2448 3877 5.249393 TCCTCTGCTCTTCTCACCTAATTTT 59.751 40.000 0.00 0.00 0.00 1.82
2449 3878 5.584251 CCTCTGCTCTTCTCACCTAATTTTC 59.416 44.000 0.00 0.00 0.00 2.29
2452 4312 5.620206 TGCTCTTCTCACCTAATTTTCACA 58.380 37.500 0.00 0.00 0.00 3.58
2511 4374 4.193090 TGCAGAGTAAAAAGAAACGGACA 58.807 39.130 0.00 0.00 0.00 4.02
2525 4388 3.320673 ACGGACAGACCAGAAAAGATC 57.679 47.619 0.00 0.00 38.90 2.75
2581 4444 7.081349 GTCATGCTACTGTAGTTATGCTCTAG 58.919 42.308 20.01 0.00 0.00 2.43
2587 4450 8.138712 GCTACTGTAGTTATGCTCTAGTTTCAT 58.861 37.037 15.71 0.00 0.00 2.57
2596 4459 2.941720 GCTCTAGTTTCATGGAGCTTGG 59.058 50.000 10.92 0.00 45.15 3.61
2597 4460 3.620966 GCTCTAGTTTCATGGAGCTTGGT 60.621 47.826 10.92 0.00 45.15 3.67
2598 4461 3.937706 CTCTAGTTTCATGGAGCTTGGTG 59.062 47.826 0.00 0.00 0.00 4.17
2599 4462 1.251251 AGTTTCATGGAGCTTGGTGC 58.749 50.000 0.00 0.00 43.29 5.01
2600 4463 0.244721 GTTTCATGGAGCTTGGTGCC 59.755 55.000 0.00 0.00 44.23 5.01
2601 4464 0.178967 TTTCATGGAGCTTGGTGCCA 60.179 50.000 0.00 0.00 44.23 4.92
2602 4465 0.609957 TTCATGGAGCTTGGTGCCAG 60.610 55.000 0.00 0.00 44.23 4.85
2608 4471 0.833287 GAGCTTGGTGCCAGGATCTA 59.167 55.000 10.70 0.00 44.23 1.98
2619 4482 2.350964 GCCAGGATCTACGTCGATTCTC 60.351 54.545 7.89 0.00 26.37 2.87
2621 4484 1.532007 AGGATCTACGTCGATTCTCGC 59.468 52.381 5.06 0.00 40.21 5.03
2639 4502 3.839432 CGAGCCGAGGGAGGTTCC 61.839 72.222 0.00 0.00 38.13 3.62
2703 4586 2.919328 GCCAATGCCATAGCCCCC 60.919 66.667 0.00 0.00 38.69 5.40
2704 4587 2.608181 CCAATGCCATAGCCCCCA 59.392 61.111 0.00 0.00 38.69 4.96
2705 4588 1.156803 CCAATGCCATAGCCCCCAT 59.843 57.895 0.00 0.00 38.69 4.00
2707 4590 1.075482 AATGCCATAGCCCCCATCG 59.925 57.895 0.00 0.00 38.69 3.84
2708 4591 1.719063 AATGCCATAGCCCCCATCGT 61.719 55.000 0.00 0.00 38.69 3.73
2709 4592 2.281761 GCCATAGCCCCCATCGTG 60.282 66.667 0.00 0.00 0.00 4.35
2710 4593 3.120086 GCCATAGCCCCCATCGTGT 62.120 63.158 0.00 0.00 0.00 4.49
2727 4610 2.161808 CGTGTCGGTATTCTGACTGTCT 59.838 50.000 11.99 0.00 46.71 3.41
2751 4634 5.578776 AGATTTAAATTCGCCGTCAATTCC 58.421 37.500 1.43 0.00 0.00 3.01
2753 4636 1.834188 AAATTCGCCGTCAATTCCCT 58.166 45.000 0.00 0.00 0.00 4.20
2754 4637 1.379527 AATTCGCCGTCAATTCCCTC 58.620 50.000 0.00 0.00 0.00 4.30
2760 4643 0.804989 CCGTCAATTCCCTCTGCAAC 59.195 55.000 0.00 0.00 0.00 4.17
2763 4646 2.087646 GTCAATTCCCTCTGCAACCTC 58.912 52.381 0.00 0.00 0.00 3.85
2765 4648 2.026822 TCAATTCCCTCTGCAACCTCTC 60.027 50.000 0.00 0.00 0.00 3.20
2773 4656 0.906756 CTGCAACCTCTCCCTCCTCA 60.907 60.000 0.00 0.00 0.00 3.86
2774 4657 0.906756 TGCAACCTCTCCCTCCTCAG 60.907 60.000 0.00 0.00 0.00 3.35
2777 4660 1.277557 CAACCTCTCCCTCCTCAGTTG 59.722 57.143 0.00 0.00 0.00 3.16
2781 4664 2.251818 CTCTCCCTCCTCAGTTGTCAA 58.748 52.381 0.00 0.00 0.00 3.18
2782 4665 1.971357 TCTCCCTCCTCAGTTGTCAAC 59.029 52.381 7.68 7.68 0.00 3.18
2784 4667 3.165875 CTCCCTCCTCAGTTGTCAACTA 58.834 50.000 17.76 1.97 40.46 2.24
2787 4670 4.597507 TCCCTCCTCAGTTGTCAACTAATT 59.402 41.667 17.76 0.00 40.46 1.40
2788 4671 5.073144 TCCCTCCTCAGTTGTCAACTAATTT 59.927 40.000 17.76 0.00 40.46 1.82
2789 4672 5.412904 CCCTCCTCAGTTGTCAACTAATTTC 59.587 44.000 17.76 0.00 40.46 2.17
2791 4674 5.935945 TCCTCAGTTGTCAACTAATTTCCA 58.064 37.500 17.76 0.00 40.46 3.53
2792 4675 5.763204 TCCTCAGTTGTCAACTAATTTCCAC 59.237 40.000 17.76 0.00 40.46 4.02
2793 4676 5.530915 CCTCAGTTGTCAACTAATTTCCACA 59.469 40.000 17.76 0.00 40.46 4.17
2794 4677 6.039270 CCTCAGTTGTCAACTAATTTCCACAA 59.961 38.462 17.76 0.00 40.46 3.33
2795 4678 7.026631 TCAGTTGTCAACTAATTTCCACAAG 57.973 36.000 17.76 1.89 40.46 3.16
2796 4679 5.687285 CAGTTGTCAACTAATTTCCACAAGC 59.313 40.000 17.76 0.00 40.46 4.01
2797 4680 5.594317 AGTTGTCAACTAATTTCCACAAGCT 59.406 36.000 16.74 0.00 40.69 3.74
2798 4681 6.770785 AGTTGTCAACTAATTTCCACAAGCTA 59.229 34.615 16.74 0.00 40.69 3.32
2799 4682 6.554334 TGTCAACTAATTTCCACAAGCTAC 57.446 37.500 0.00 0.00 0.00 3.58
2800 4683 6.296026 TGTCAACTAATTTCCACAAGCTACT 58.704 36.000 0.00 0.00 0.00 2.57
2801 4684 6.204688 TGTCAACTAATTTCCACAAGCTACTG 59.795 38.462 0.00 0.00 0.00 2.74
2802 4685 5.705441 TCAACTAATTTCCACAAGCTACTGG 59.295 40.000 3.54 3.54 0.00 4.00
2824 4707 5.420739 TGGTCTCCGCTATATATATGTGCAA 59.579 40.000 17.07 8.03 0.00 4.08
2906 4789 5.652014 TCAATGCAAAATAGTGGGAAGGTAG 59.348 40.000 0.00 0.00 0.00 3.18
2910 4793 5.013704 TGCAAAATAGTGGGAAGGTAGAAGA 59.986 40.000 0.00 0.00 0.00 2.87
2916 4799 3.583526 AGTGGGAAGGTAGAAGAAAGACC 59.416 47.826 0.00 0.00 0.00 3.85
2917 4800 3.326880 GTGGGAAGGTAGAAGAAAGACCA 59.673 47.826 0.00 0.00 35.56 4.02
2918 4801 3.583086 TGGGAAGGTAGAAGAAAGACCAG 59.417 47.826 0.00 0.00 35.56 4.00
2919 4802 3.583526 GGGAAGGTAGAAGAAAGACCAGT 59.416 47.826 0.00 0.00 35.56 4.00
2920 4803 4.776308 GGGAAGGTAGAAGAAAGACCAGTA 59.224 45.833 0.00 0.00 35.56 2.74
2967 4850 5.284864 TGCAGAAGATTATTACTCTCTGCG 58.715 41.667 14.95 0.00 41.54 5.18
2987 4870 1.602920 GCACCAAACTAAAGCTGGCAC 60.603 52.381 0.00 0.00 33.19 5.01
3024 4907 5.462405 AGCGATCGATCCAAATTAGAGTAC 58.538 41.667 21.57 0.00 0.00 2.73
3025 4908 4.621886 GCGATCGATCCAAATTAGAGTACC 59.378 45.833 21.57 0.00 0.00 3.34
3026 4909 5.565045 GCGATCGATCCAAATTAGAGTACCT 60.565 44.000 21.57 0.00 0.00 3.08
3027 4910 5.859114 CGATCGATCCAAATTAGAGTACCTG 59.141 44.000 19.51 0.00 0.00 4.00
3029 4912 6.978674 TCGATCCAAATTAGAGTACCTGAT 57.021 37.500 0.00 0.00 0.00 2.90
3030 4913 8.651589 ATCGATCCAAATTAGAGTACCTGATA 57.348 34.615 0.00 0.00 0.00 2.15
3031 4914 8.651589 TCGATCCAAATTAGAGTACCTGATAT 57.348 34.615 0.00 0.00 0.00 1.63
3032 4915 8.523658 TCGATCCAAATTAGAGTACCTGATATG 58.476 37.037 0.00 0.00 0.00 1.78
3033 4916 8.523658 CGATCCAAATTAGAGTACCTGATATGA 58.476 37.037 0.00 0.00 0.00 2.15
3034 4917 9.646427 GATCCAAATTAGAGTACCTGATATGAC 57.354 37.037 0.00 0.00 0.00 3.06
3035 4918 8.783660 TCCAAATTAGAGTACCTGATATGACT 57.216 34.615 0.00 0.00 0.00 3.41
3036 4919 8.861086 TCCAAATTAGAGTACCTGATATGACTC 58.139 37.037 0.00 0.00 38.89 3.36
3040 4923 9.647918 AATTAGAGTACCTGATATGACTCTTGA 57.352 33.333 8.56 0.20 44.91 3.02
3041 4924 9.647918 ATTAGAGTACCTGATATGACTCTTGAA 57.352 33.333 8.56 0.00 44.91 2.69
3042 4925 9.647918 TTAGAGTACCTGATATGACTCTTGAAT 57.352 33.333 8.56 0.00 44.91 2.57
3043 4926 7.950512 AGAGTACCTGATATGACTCTTGAATG 58.049 38.462 0.00 0.00 44.91 2.67
3044 4927 7.563188 AGAGTACCTGATATGACTCTTGAATGT 59.437 37.037 0.00 0.00 44.91 2.71
3045 4928 8.768501 AGTACCTGATATGACTCTTGAATGTA 57.231 34.615 0.00 0.00 0.00 2.29
3046 4929 9.201989 AGTACCTGATATGACTCTTGAATGTAA 57.798 33.333 0.00 0.00 0.00 2.41
3047 4930 9.988815 GTACCTGATATGACTCTTGAATGTAAT 57.011 33.333 0.00 0.00 0.00 1.89
3075 4958 0.321671 GCACACACTAGAGCCCAGAA 59.678 55.000 0.00 0.00 0.00 3.02
3079 4962 1.065926 CACACTAGAGCCCAGAATGCA 60.066 52.381 0.00 0.00 31.97 3.96
3088 4971 1.680207 GCCCAGAATGCATCTTCCTTC 59.320 52.381 0.00 0.00 35.73 3.46
3126 5019 8.748380 CCTGAAAAAGGCTAAATTTAGTTCAG 57.252 34.615 28.26 28.26 39.93 3.02
3134 5027 5.863935 GGCTAAATTTAGTTCAGCTTTGTGG 59.136 40.000 22.94 0.00 33.32 4.17
3174 5067 3.317993 GCCAAAAACCAGAGCTAAGAACA 59.682 43.478 0.00 0.00 0.00 3.18
3203 5096 3.415212 CAGGAAAAGACAGAGGCATGAA 58.585 45.455 0.00 0.00 0.00 2.57
3204 5097 4.015084 CAGGAAAAGACAGAGGCATGAAT 58.985 43.478 0.00 0.00 0.00 2.57
3205 5098 4.015084 AGGAAAAGACAGAGGCATGAATG 58.985 43.478 0.00 0.00 0.00 2.67
3206 5099 3.129988 GGAAAAGACAGAGGCATGAATGG 59.870 47.826 0.00 0.00 0.00 3.16
3215 5108 3.727419 GCATGAATGGCAGGTGAAC 57.273 52.632 0.00 0.00 0.00 3.18
3216 5109 0.889994 GCATGAATGGCAGGTGAACA 59.110 50.000 0.00 0.00 0.00 3.18
3217 5110 1.273048 GCATGAATGGCAGGTGAACAA 59.727 47.619 0.00 0.00 0.00 2.83
3218 5111 2.927871 GCATGAATGGCAGGTGAACAAC 60.928 50.000 0.00 0.00 0.00 3.32
3219 5112 2.363306 TGAATGGCAGGTGAACAACT 57.637 45.000 0.00 0.00 0.00 3.16
3220 5113 2.665165 TGAATGGCAGGTGAACAACTT 58.335 42.857 0.00 0.00 0.00 2.66
3221 5114 3.826524 TGAATGGCAGGTGAACAACTTA 58.173 40.909 0.00 0.00 0.00 2.24
3222 5115 4.406456 TGAATGGCAGGTGAACAACTTAT 58.594 39.130 0.00 0.00 0.00 1.73
3223 5116 5.565509 TGAATGGCAGGTGAACAACTTATA 58.434 37.500 0.00 0.00 0.00 0.98
3224 5117 5.414454 TGAATGGCAGGTGAACAACTTATAC 59.586 40.000 0.00 0.00 0.00 1.47
3225 5118 4.359434 TGGCAGGTGAACAACTTATACA 57.641 40.909 0.00 0.00 0.00 2.29
3226 5119 4.720046 TGGCAGGTGAACAACTTATACAA 58.280 39.130 0.00 0.00 0.00 2.41
3227 5120 4.759693 TGGCAGGTGAACAACTTATACAAG 59.240 41.667 0.00 0.00 37.81 3.16
3229 5122 5.935789 GGCAGGTGAACAACTTATACAAGTA 59.064 40.000 0.00 0.00 44.41 2.24
3230 5123 6.128363 GGCAGGTGAACAACTTATACAAGTAC 60.128 42.308 0.00 0.00 44.41 2.73
3231 5124 6.425721 GCAGGTGAACAACTTATACAAGTACA 59.574 38.462 0.00 0.00 44.41 2.90
3232 5125 7.570691 GCAGGTGAACAACTTATACAAGTACAC 60.571 40.741 0.00 0.00 44.41 2.90
3233 5126 6.643770 AGGTGAACAACTTATACAAGTACACG 59.356 38.462 0.00 0.00 44.41 4.49
3234 5127 6.421801 GGTGAACAACTTATACAAGTACACGT 59.578 38.462 0.00 0.00 44.41 4.49
3235 5128 7.042523 GGTGAACAACTTATACAAGTACACGTT 60.043 37.037 0.00 0.00 44.41 3.99
3236 5129 8.330302 GTGAACAACTTATACAAGTACACGTTT 58.670 33.333 0.00 0.00 44.41 3.60
3237 5130 8.881743 TGAACAACTTATACAAGTACACGTTTT 58.118 29.630 0.00 0.00 44.41 2.43
3238 5131 9.706846 GAACAACTTATACAAGTACACGTTTTT 57.293 29.630 0.00 0.00 44.41 1.94
3239 5132 9.706846 AACAACTTATACAAGTACACGTTTTTC 57.293 29.630 0.00 0.00 44.41 2.29
3240 5133 8.337532 ACAACTTATACAAGTACACGTTTTTCC 58.662 33.333 0.00 0.00 44.41 3.13
3241 5134 8.553696 CAACTTATACAAGTACACGTTTTTCCT 58.446 33.333 0.00 0.00 44.41 3.36
3242 5135 8.667076 ACTTATACAAGTACACGTTTTTCCTT 57.333 30.769 0.00 0.00 43.33 3.36
3243 5136 8.768019 ACTTATACAAGTACACGTTTTTCCTTC 58.232 33.333 0.00 0.00 43.33 3.46
3244 5137 8.891671 TTATACAAGTACACGTTTTTCCTTCT 57.108 30.769 0.00 0.00 0.00 2.85
3245 5138 5.479716 ACAAGTACACGTTTTTCCTTCTG 57.520 39.130 0.00 0.00 0.00 3.02
3246 5139 4.334481 ACAAGTACACGTTTTTCCTTCTGG 59.666 41.667 0.00 0.00 0.00 3.86
3247 5140 4.411256 AGTACACGTTTTTCCTTCTGGA 57.589 40.909 0.00 0.00 41.36 3.86
3258 5151 3.864789 TCCTTCTGGAATAATCTGCCC 57.135 47.619 0.00 0.00 39.87 5.36
3259 5152 3.397527 TCCTTCTGGAATAATCTGCCCT 58.602 45.455 0.00 0.00 39.87 5.19
3260 5153 4.566837 TCCTTCTGGAATAATCTGCCCTA 58.433 43.478 0.00 0.00 39.87 3.53
3261 5154 4.975147 TCCTTCTGGAATAATCTGCCCTAA 59.025 41.667 0.00 0.00 39.87 2.69
3262 5155 5.431731 TCCTTCTGGAATAATCTGCCCTAAA 59.568 40.000 0.00 0.00 39.87 1.85
3263 5156 5.767168 CCTTCTGGAATAATCTGCCCTAAAG 59.233 44.000 0.00 0.00 34.57 1.85
3264 5157 6.409695 CCTTCTGGAATAATCTGCCCTAAAGA 60.410 42.308 0.00 0.00 34.57 2.52
3265 5158 6.575244 TCTGGAATAATCTGCCCTAAAGAA 57.425 37.500 0.00 0.00 0.00 2.52
3266 5159 6.969043 TCTGGAATAATCTGCCCTAAAGAAA 58.031 36.000 0.00 0.00 0.00 2.52
3267 5160 7.410174 TCTGGAATAATCTGCCCTAAAGAAAA 58.590 34.615 0.00 0.00 0.00 2.29
3268 5161 7.339466 TCTGGAATAATCTGCCCTAAAGAAAAC 59.661 37.037 0.00 0.00 0.00 2.43
3269 5162 6.094881 TGGAATAATCTGCCCTAAAGAAAACG 59.905 38.462 0.00 0.00 0.00 3.60
3270 5163 6.095021 GGAATAATCTGCCCTAAAGAAAACGT 59.905 38.462 0.00 0.00 0.00 3.99
3271 5164 4.766404 AATCTGCCCTAAAGAAAACGTG 57.234 40.909 0.00 0.00 0.00 4.49
3272 5165 1.877443 TCTGCCCTAAAGAAAACGTGC 59.123 47.619 0.00 0.00 0.00 5.34
3273 5166 1.606668 CTGCCCTAAAGAAAACGTGCA 59.393 47.619 0.00 0.00 0.00 4.57
3274 5167 1.606668 TGCCCTAAAGAAAACGTGCAG 59.393 47.619 0.00 0.00 0.00 4.41
3275 5168 1.666023 GCCCTAAAGAAAACGTGCAGC 60.666 52.381 0.00 0.00 0.00 5.25
3276 5169 1.068541 CCCTAAAGAAAACGTGCAGCC 60.069 52.381 0.00 0.00 0.00 4.85
3277 5170 1.880027 CCTAAAGAAAACGTGCAGCCT 59.120 47.619 0.00 0.00 0.00 4.58
3278 5171 2.293399 CCTAAAGAAAACGTGCAGCCTT 59.707 45.455 0.00 0.00 0.00 4.35
3279 5172 2.959507 AAAGAAAACGTGCAGCCTTT 57.040 40.000 0.00 0.00 0.00 3.11
3280 5173 2.492019 AAGAAAACGTGCAGCCTTTC 57.508 45.000 0.00 0.00 0.00 2.62
3281 5174 1.388547 AGAAAACGTGCAGCCTTTCA 58.611 45.000 13.77 0.00 31.56 2.69
3282 5175 1.334869 AGAAAACGTGCAGCCTTTCAG 59.665 47.619 13.77 0.00 31.56 3.02
3283 5176 1.065551 GAAAACGTGCAGCCTTTCAGT 59.934 47.619 8.67 0.00 0.00 3.41
3284 5177 1.961793 AAACGTGCAGCCTTTCAGTA 58.038 45.000 0.00 0.00 0.00 2.74
3285 5178 1.961793 AACGTGCAGCCTTTCAGTAA 58.038 45.000 0.00 0.00 0.00 2.24
3286 5179 1.226746 ACGTGCAGCCTTTCAGTAAC 58.773 50.000 0.00 0.00 0.00 2.50
3287 5180 1.225855 CGTGCAGCCTTTCAGTAACA 58.774 50.000 0.00 0.00 0.00 2.41
3288 5181 1.195448 CGTGCAGCCTTTCAGTAACAG 59.805 52.381 0.00 0.00 0.00 3.16
3289 5182 2.494059 GTGCAGCCTTTCAGTAACAGA 58.506 47.619 0.00 0.00 0.00 3.41
3290 5183 2.878406 GTGCAGCCTTTCAGTAACAGAA 59.122 45.455 0.00 0.00 0.00 3.02
3291 5184 3.503748 GTGCAGCCTTTCAGTAACAGAAT 59.496 43.478 0.00 0.00 0.00 2.40
3292 5185 3.503363 TGCAGCCTTTCAGTAACAGAATG 59.497 43.478 0.00 0.00 46.00 2.67
3293 5186 3.119708 GCAGCCTTTCAGTAACAGAATGG 60.120 47.826 7.99 7.99 43.62 3.16
3294 5187 3.441572 CAGCCTTTCAGTAACAGAATGGG 59.558 47.826 12.35 5.88 43.62 4.00
3295 5188 2.164422 GCCTTTCAGTAACAGAATGGGC 59.836 50.000 12.35 10.43 43.62 5.36
3296 5189 2.420022 CCTTTCAGTAACAGAATGGGCG 59.580 50.000 5.39 0.00 43.62 6.13
3297 5190 3.334691 CTTTCAGTAACAGAATGGGCGA 58.665 45.455 0.00 0.00 43.62 5.54
3298 5191 3.410631 TTCAGTAACAGAATGGGCGAA 57.589 42.857 0.00 0.00 43.62 4.70
3299 5192 3.410631 TCAGTAACAGAATGGGCGAAA 57.589 42.857 0.00 0.00 43.62 3.46
3300 5193 3.745799 TCAGTAACAGAATGGGCGAAAA 58.254 40.909 0.00 0.00 43.62 2.29
3301 5194 3.500680 TCAGTAACAGAATGGGCGAAAAC 59.499 43.478 0.00 0.00 43.62 2.43
3302 5195 2.482721 AGTAACAGAATGGGCGAAAACG 59.517 45.455 0.00 0.00 43.62 3.60
3303 5196 1.314730 AACAGAATGGGCGAAAACGT 58.685 45.000 0.00 0.00 43.62 3.99
3304 5197 0.591170 ACAGAATGGGCGAAAACGTG 59.409 50.000 0.00 0.00 43.62 4.49
3305 5198 0.729140 CAGAATGGGCGAAAACGTGC 60.729 55.000 0.00 0.00 0.00 5.34
3306 5199 1.169661 AGAATGGGCGAAAACGTGCA 61.170 50.000 0.00 0.00 0.00 4.57
3307 5200 0.729140 GAATGGGCGAAAACGTGCAG 60.729 55.000 0.00 0.00 0.00 4.41
3308 5201 2.747507 AATGGGCGAAAACGTGCAGC 62.748 55.000 0.00 0.00 0.00 5.25
3309 5202 4.700365 GGGCGAAAACGTGCAGCC 62.700 66.667 13.93 13.93 46.51 4.85
3310 5203 3.660111 GGCGAAAACGTGCAGCCT 61.660 61.111 14.71 0.00 44.06 4.58
3311 5204 2.331451 GCGAAAACGTGCAGCCTT 59.669 55.556 0.00 0.00 0.00 4.35
3312 5205 1.725973 GCGAAAACGTGCAGCCTTC 60.726 57.895 0.00 0.00 0.00 3.46
3313 5206 1.941812 CGAAAACGTGCAGCCTTCT 59.058 52.632 0.00 0.00 0.00 2.85
3314 5207 0.384725 CGAAAACGTGCAGCCTTCTG 60.385 55.000 0.00 0.00 43.16 3.02
3315 5208 0.040067 GAAAACGTGCAGCCTTCTGG 60.040 55.000 0.00 0.00 40.65 3.86
3316 5209 0.465460 AAAACGTGCAGCCTTCTGGA 60.465 50.000 0.00 0.00 40.65 3.86
3317 5210 0.886490 AAACGTGCAGCCTTCTGGAG 60.886 55.000 0.00 0.00 41.45 3.86
3318 5211 2.044806 AACGTGCAGCCTTCTGGAGT 62.045 55.000 0.00 0.00 41.45 3.85
3319 5212 1.185618 ACGTGCAGCCTTCTGGAGTA 61.186 55.000 0.00 0.00 41.45 2.59
3320 5213 0.176680 CGTGCAGCCTTCTGGAGTAT 59.823 55.000 0.00 0.00 41.45 2.12
3321 5214 1.804372 CGTGCAGCCTTCTGGAGTATC 60.804 57.143 0.00 0.00 41.45 2.24
3322 5215 1.484240 GTGCAGCCTTCTGGAGTATCT 59.516 52.381 0.00 0.00 41.45 1.98
3323 5216 2.695666 GTGCAGCCTTCTGGAGTATCTA 59.304 50.000 0.00 0.00 41.45 1.98
3324 5217 3.133003 GTGCAGCCTTCTGGAGTATCTAA 59.867 47.826 0.00 0.00 41.45 2.10
3325 5218 3.386078 TGCAGCCTTCTGGAGTATCTAAG 59.614 47.826 0.00 0.00 40.65 2.18
3326 5219 3.801983 GCAGCCTTCTGGAGTATCTAAGC 60.802 52.174 0.00 0.00 40.65 3.09
3327 5220 3.640967 CAGCCTTCTGGAGTATCTAAGCT 59.359 47.826 0.00 0.00 36.68 3.74
3328 5221 4.830046 CAGCCTTCTGGAGTATCTAAGCTA 59.170 45.833 0.00 0.00 36.68 3.32
3329 5222 4.830600 AGCCTTCTGGAGTATCTAAGCTAC 59.169 45.833 0.00 0.00 34.57 3.58
3330 5223 4.830600 GCCTTCTGGAGTATCTAAGCTACT 59.169 45.833 0.00 0.00 34.57 2.57
3331 5224 5.048294 GCCTTCTGGAGTATCTAAGCTACTC 60.048 48.000 5.20 5.20 42.81 2.59
3332 5225 6.303839 CCTTCTGGAGTATCTAAGCTACTCT 58.696 44.000 12.21 0.00 43.00 3.24
3333 5226 7.455058 CCTTCTGGAGTATCTAAGCTACTCTA 58.545 42.308 12.21 6.52 43.00 2.43
3335 5228 7.621006 TCTGGAGTATCTAAGCTACTCTAGT 57.379 40.000 20.16 1.42 46.59 2.57
3336 5229 8.724113 TCTGGAGTATCTAAGCTACTCTAGTA 57.276 38.462 20.16 9.46 46.59 1.82
3337 5230 8.809066 TCTGGAGTATCTAAGCTACTCTAGTAG 58.191 40.741 20.16 11.98 46.59 2.57
3348 5241 5.568685 CTACTCTAGTAGCAGCAACAGAA 57.431 43.478 4.29 0.00 41.15 3.02
3349 5242 6.142818 CTACTCTAGTAGCAGCAACAGAAT 57.857 41.667 4.29 0.00 41.15 2.40
3350 5243 4.753233 ACTCTAGTAGCAGCAACAGAATG 58.247 43.478 0.00 0.00 46.00 2.67
3351 5244 4.118410 CTCTAGTAGCAGCAACAGAATGG 58.882 47.826 0.00 0.00 43.62 3.16
3352 5245 2.119801 AGTAGCAGCAACAGAATGGG 57.880 50.000 0.00 0.00 43.62 4.00
3353 5246 0.453390 GTAGCAGCAACAGAATGGGC 59.547 55.000 0.00 0.00 43.62 5.36
3354 5247 0.038021 TAGCAGCAACAGAATGGGCA 59.962 50.000 0.00 0.00 43.62 5.36
3355 5248 0.828762 AGCAGCAACAGAATGGGCAA 60.829 50.000 0.00 0.00 43.62 4.52
3356 5249 0.033781 GCAGCAACAGAATGGGCAAA 59.966 50.000 0.00 0.00 43.62 3.68
3357 5250 1.540797 GCAGCAACAGAATGGGCAAAA 60.541 47.619 0.00 0.00 43.62 2.44
3358 5251 2.836262 CAGCAACAGAATGGGCAAAAA 58.164 42.857 0.00 0.00 43.62 1.94
3375 5268 2.271944 AAAACGCCAGCTTAGTTCCT 57.728 45.000 0.00 0.00 0.00 3.36
3376 5269 2.271944 AAACGCCAGCTTAGTTCCTT 57.728 45.000 0.00 0.00 0.00 3.36
3377 5270 2.271944 AACGCCAGCTTAGTTCCTTT 57.728 45.000 0.00 0.00 0.00 3.11
3378 5271 1.809684 ACGCCAGCTTAGTTCCTTTC 58.190 50.000 0.00 0.00 0.00 2.62
3379 5272 0.721718 CGCCAGCTTAGTTCCTTTCG 59.278 55.000 0.00 0.00 0.00 3.46
3380 5273 1.087501 GCCAGCTTAGTTCCTTTCGG 58.912 55.000 0.00 0.00 0.00 4.30
3381 5274 1.610886 GCCAGCTTAGTTCCTTTCGGT 60.611 52.381 0.00 0.00 0.00 4.69
3382 5275 2.354403 GCCAGCTTAGTTCCTTTCGGTA 60.354 50.000 0.00 0.00 0.00 4.02
3383 5276 3.867216 GCCAGCTTAGTTCCTTTCGGTAA 60.867 47.826 0.00 0.00 0.00 2.85
3384 5277 3.683340 CCAGCTTAGTTCCTTTCGGTAAC 59.317 47.826 0.00 0.00 0.00 2.50
3385 5278 3.683340 CAGCTTAGTTCCTTTCGGTAACC 59.317 47.826 0.00 0.00 0.00 2.85
3386 5279 3.325716 AGCTTAGTTCCTTTCGGTAACCA 59.674 43.478 0.00 0.00 0.00 3.67
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
44 45 1.666011 GGACGACCAGAAGCACTCA 59.334 57.895 0.00 0.00 35.97 3.41
47 48 1.733399 GACGGACGACCAGAAGCAC 60.733 63.158 4.48 0.00 35.59 4.40
87 88 0.331616 ATTTCCCAGAAACGGAGGGG 59.668 55.000 0.00 0.00 43.03 4.79
94 95 1.067846 GCGGGTTGATTTCCCAGAAAC 60.068 52.381 1.91 0.00 44.81 2.78
101 103 1.444917 GGGATCGCGGGTTGATTTCC 61.445 60.000 6.13 0.23 0.00 3.13
224 228 1.539496 GGGGGTTTTCGGCAAAAAGAC 60.539 52.381 0.00 0.00 37.52 3.01
225 229 0.753867 GGGGGTTTTCGGCAAAAAGA 59.246 50.000 0.00 0.00 37.52 2.52
438 456 7.843490 TTTAAACATTCGAATCTGTCCCTAG 57.157 36.000 7.92 0.00 0.00 3.02
590 613 6.846870 ACAATACAAATTAACGTTGCATCG 57.153 33.333 15.36 15.36 0.00 3.84
610 633 7.148474 GGTGCAAAAGAAAGATAGATCGTACAA 60.148 37.037 0.00 0.00 0.00 2.41
613 636 5.518847 CGGTGCAAAAGAAAGATAGATCGTA 59.481 40.000 0.00 0.00 0.00 3.43
633 656 0.525761 AATTTGAATCGGCACCGGTG 59.474 50.000 30.66 30.66 40.25 4.94
687 713 8.759481 TGCATGGTTATAGATGGTTTATTTCA 57.241 30.769 0.00 0.00 0.00 2.69
692 718 7.768582 CGGATATGCATGGTTATAGATGGTTTA 59.231 37.037 10.16 0.00 0.00 2.01
748 774 7.936496 TCAACATGGCATCTTATCAGTTTTA 57.064 32.000 0.00 0.00 0.00 1.52
751 777 6.839124 TTTCAACATGGCATCTTATCAGTT 57.161 33.333 0.00 0.00 0.00 3.16
789 818 6.749036 AATCGGAACTCAAGACCCTAATAT 57.251 37.500 0.00 0.00 0.00 1.28
794 823 4.225267 ACAATAATCGGAACTCAAGACCCT 59.775 41.667 0.00 0.00 0.00 4.34
806 835 5.565592 ACTACACGTACACAATAATCGGA 57.434 39.130 0.00 0.00 0.00 4.55
807 836 7.919313 AATACTACACGTACACAATAATCGG 57.081 36.000 0.00 0.00 0.00 4.18
836 872 2.712539 CGTGCGTTGCAACAGGAA 59.287 55.556 28.01 5.70 41.47 3.36
840 877 2.512745 AGTCCGTGCGTTGCAACA 60.513 55.556 28.01 8.05 41.47 3.33
959 1001 2.940994 TTCTCAAATCCCAACCGACA 57.059 45.000 0.00 0.00 0.00 4.35
998 1040 4.750598 GTCTCCTCGTTGGAATAAATAGGC 59.249 45.833 2.05 0.00 45.63 3.93
999 1041 5.753921 GTGTCTCCTCGTTGGAATAAATAGG 59.246 44.000 2.05 0.00 45.63 2.57
1000 1042 5.459107 CGTGTCTCCTCGTTGGAATAAATAG 59.541 44.000 2.05 0.00 45.63 1.73
1035 1077 2.429351 GGATCGATCGATGCGACGC 61.429 63.158 33.86 18.03 40.94 5.19
1036 1078 0.455126 ATGGATCGATCGATGCGACG 60.455 55.000 34.46 9.42 44.35 5.12
1037 1079 1.263776 GATGGATCGATCGATGCGAC 58.736 55.000 34.46 27.76 44.35 5.19
1038 1080 0.171231 GGATGGATCGATCGATGCGA 59.829 55.000 34.46 26.14 44.35 5.10
1039 1081 0.803768 GGGATGGATCGATCGATGCG 60.804 60.000 34.46 6.78 44.35 4.73
1044 1086 2.797439 CGATGATGGGATGGATCGATCG 60.797 54.545 18.81 9.36 40.06 3.69
1045 1087 2.428530 TCGATGATGGGATGGATCGATC 59.571 50.000 17.36 17.36 41.21 3.69
1046 1088 2.167281 GTCGATGATGGGATGGATCGAT 59.833 50.000 0.00 0.00 45.96 3.59
1047 1089 1.546029 GTCGATGATGGGATGGATCGA 59.454 52.381 0.00 0.00 43.21 3.59
1048 1090 1.404717 GGTCGATGATGGGATGGATCG 60.405 57.143 0.00 0.00 39.22 3.69
1049 1091 1.404717 CGGTCGATGATGGGATGGATC 60.405 57.143 0.00 0.00 0.00 3.36
1050 1092 0.610174 CGGTCGATGATGGGATGGAT 59.390 55.000 0.00 0.00 0.00 3.41
1051 1093 0.469144 TCGGTCGATGATGGGATGGA 60.469 55.000 0.00 0.00 0.00 3.41
1052 1094 0.610174 ATCGGTCGATGATGGGATGG 59.390 55.000 4.97 0.00 32.98 3.51
1053 1095 1.547820 AGATCGGTCGATGATGGGATG 59.452 52.381 10.77 0.00 34.60 3.51
1054 1096 1.821753 GAGATCGGTCGATGATGGGAT 59.178 52.381 10.77 0.00 34.60 3.85
1055 1097 1.248486 GAGATCGGTCGATGATGGGA 58.752 55.000 10.77 0.00 34.60 4.37
1056 1098 0.109551 CGAGATCGGTCGATGATGGG 60.110 60.000 10.77 0.00 42.85 4.00
1057 1099 0.875059 TCGAGATCGGTCGATGATGG 59.125 55.000 10.77 1.49 43.91 3.51
1079 1121 4.479993 AGCTCGACATGGCTGGCC 62.480 66.667 4.43 4.43 37.41 5.36
1083 1125 3.842923 CCGGAGCTCGACATGGCT 61.843 66.667 7.83 0.00 42.43 4.75
1304 1352 2.432300 ATGAAGGGGTAGGCGTCGG 61.432 63.158 0.00 0.00 0.00 4.79
1312 1360 1.913419 GAAGGTGACCATGAAGGGGTA 59.087 52.381 3.63 0.00 43.89 3.69
1313 1361 0.698818 GAAGGTGACCATGAAGGGGT 59.301 55.000 3.63 0.00 43.89 4.95
1315 1363 1.614317 GGTGAAGGTGACCATGAAGGG 60.614 57.143 3.63 0.00 43.89 3.95
1316 1364 1.826385 GGTGAAGGTGACCATGAAGG 58.174 55.000 3.63 0.00 45.67 3.46
1317 1365 1.442769 CGGTGAAGGTGACCATGAAG 58.557 55.000 3.63 0.00 32.45 3.02
1318 1366 0.605319 GCGGTGAAGGTGACCATGAA 60.605 55.000 3.63 0.00 32.45 2.57
1319 1367 1.003839 GCGGTGAAGGTGACCATGA 60.004 57.895 3.63 0.00 32.45 3.07
1325 2665 2.342279 CGAAGGCGGTGAAGGTGA 59.658 61.111 0.00 0.00 0.00 4.02
1381 2724 2.506438 GTAGACGTGCCCGCACTC 60.506 66.667 17.14 12.95 44.16 3.51
1451 2794 1.226888 GGGATGTCGGTGTAGTCGC 60.227 63.158 0.00 0.00 0.00 5.19
1579 2922 2.675772 GGAGACGTCGGTCCAGGT 60.676 66.667 16.75 0.00 44.54 4.00
1733 3082 0.169009 GAGCATGGTTTCGAAGGTGC 59.831 55.000 14.36 14.36 0.00 5.01
1734 3083 0.804989 GGAGCATGGTTTCGAAGGTG 59.195 55.000 0.00 0.00 0.00 4.00
1744 3093 1.139058 GTAGATGAACCGGAGCATGGT 59.861 52.381 9.46 0.00 42.98 3.55
1827 3188 4.415332 TCGAGCGCGAACCTGTCC 62.415 66.667 12.10 0.00 44.78 4.02
1867 3228 1.028905 ATGCTGCCGAGTAGTCTCTC 58.971 55.000 0.00 0.00 38.45 3.20
1872 3233 1.139734 CGACATGCTGCCGAGTAGT 59.860 57.895 0.00 0.00 0.00 2.73
1875 3236 2.125912 GTCGACATGCTGCCGAGT 60.126 61.111 11.55 0.00 31.81 4.18
1878 3239 4.794439 TCCGTCGACATGCTGCCG 62.794 66.667 17.16 0.00 0.00 5.69
1895 3256 2.430244 GCATGTCGACGACGGTGT 60.430 61.111 24.69 10.69 40.21 4.16
1948 3311 2.473664 AAGTCGACGCACTCTTCCCG 62.474 60.000 10.46 0.00 0.00 5.14
1978 3341 2.380410 CCTCGTTGAAGTTCCGGCG 61.380 63.158 0.00 0.00 0.00 6.46
2051 3414 2.561885 CGCTCTCCTTGACGTCGT 59.438 61.111 11.62 0.00 0.00 4.34
2082 3445 3.941657 AAGAGACTCCTTGGCGCGC 62.942 63.158 25.94 25.94 0.00 6.86
2103 3466 4.832590 ACGAATAGGTAGGTCTGAATCG 57.167 45.455 0.00 0.00 0.00 3.34
2113 3476 2.233922 CCATGCCCCTACGAATAGGTAG 59.766 54.545 0.00 0.00 46.11 3.18
2116 3479 0.321653 GCCATGCCCCTACGAATAGG 60.322 60.000 0.00 0.00 46.99 2.57
2122 3485 2.666190 CGATGCCATGCCCCTACG 60.666 66.667 0.00 0.00 0.00 3.51
2272 3701 2.614829 ATTCTACGGTTATGCGCCTT 57.385 45.000 4.18 0.00 0.00 4.35
2273 3702 2.626743 AGTATTCTACGGTTATGCGCCT 59.373 45.455 4.18 0.00 0.00 5.52
2349 3778 2.091939 ACATGCTGGCACATAATGGGTA 60.092 45.455 0.00 0.00 38.20 3.69
2350 3779 1.342275 ACATGCTGGCACATAATGGGT 60.342 47.619 0.00 0.00 38.20 4.51
2393 3822 9.929722 CTTGCAAAGCGTATTTATACATAGAAA 57.070 29.630 0.00 0.00 36.98 2.52
2412 3841 1.202855 AGCAGAGGAAGAGCTTGCAAA 60.203 47.619 0.00 0.00 34.37 3.68
2413 3842 0.399454 AGCAGAGGAAGAGCTTGCAA 59.601 50.000 7.03 0.00 34.37 4.08
2414 3843 0.036577 GAGCAGAGGAAGAGCTTGCA 60.037 55.000 7.03 0.00 39.02 4.08
2415 3844 0.249955 AGAGCAGAGGAAGAGCTTGC 59.750 55.000 0.00 0.00 39.02 4.01
2416 3845 2.234414 AGAAGAGCAGAGGAAGAGCTTG 59.766 50.000 0.00 0.00 39.02 4.01
2417 3846 2.497273 GAGAAGAGCAGAGGAAGAGCTT 59.503 50.000 0.00 0.00 39.02 3.74
2418 3847 2.102578 GAGAAGAGCAGAGGAAGAGCT 58.897 52.381 0.00 0.00 42.17 4.09
2419 3848 1.824230 TGAGAAGAGCAGAGGAAGAGC 59.176 52.381 0.00 0.00 0.00 4.09
2420 3849 2.166254 GGTGAGAAGAGCAGAGGAAGAG 59.834 54.545 0.00 0.00 0.00 2.85
2422 3851 2.178580 AGGTGAGAAGAGCAGAGGAAG 58.821 52.381 0.00 0.00 0.00 3.46
2423 3852 2.317371 AGGTGAGAAGAGCAGAGGAA 57.683 50.000 0.00 0.00 0.00 3.36
2424 3853 3.458044 TTAGGTGAGAAGAGCAGAGGA 57.542 47.619 0.00 0.00 0.00 3.71
2427 3856 5.934625 GTGAAAATTAGGTGAGAAGAGCAGA 59.065 40.000 0.00 0.00 0.00 4.26
2428 3857 5.702670 TGTGAAAATTAGGTGAGAAGAGCAG 59.297 40.000 0.00 0.00 0.00 4.24
2429 3858 5.620206 TGTGAAAATTAGGTGAGAAGAGCA 58.380 37.500 0.00 0.00 0.00 4.26
2430 3859 6.205658 ACTTGTGAAAATTAGGTGAGAAGAGC 59.794 38.462 0.00 0.00 0.00 4.09
2433 3862 7.736447 AGACTTGTGAAAATTAGGTGAGAAG 57.264 36.000 0.00 0.00 0.00 2.85
2434 3863 9.793259 ATTAGACTTGTGAAAATTAGGTGAGAA 57.207 29.630 0.00 0.00 0.00 2.87
2437 3866 9.146984 CGTATTAGACTTGTGAAAATTAGGTGA 57.853 33.333 0.00 0.00 0.00 4.02
2438 3867 7.903431 GCGTATTAGACTTGTGAAAATTAGGTG 59.097 37.037 0.00 0.00 0.00 4.00
2439 3868 7.604927 TGCGTATTAGACTTGTGAAAATTAGGT 59.395 33.333 0.00 0.00 0.00 3.08
2442 3871 7.118535 TGCTGCGTATTAGACTTGTGAAAATTA 59.881 33.333 0.00 0.00 0.00 1.40
2444 3873 5.411361 TGCTGCGTATTAGACTTGTGAAAAT 59.589 36.000 0.00 0.00 0.00 1.82
2445 3874 4.752604 TGCTGCGTATTAGACTTGTGAAAA 59.247 37.500 0.00 0.00 0.00 2.29
2446 3875 4.311606 TGCTGCGTATTAGACTTGTGAAA 58.688 39.130 0.00 0.00 0.00 2.69
2447 3876 3.920446 TGCTGCGTATTAGACTTGTGAA 58.080 40.909 0.00 0.00 0.00 3.18
2448 3877 3.586100 TGCTGCGTATTAGACTTGTGA 57.414 42.857 0.00 0.00 0.00 3.58
2449 3878 5.966636 TTATGCTGCGTATTAGACTTGTG 57.033 39.130 1.86 0.00 0.00 3.33
2452 4312 7.169982 GTCTTGATTATGCTGCGTATTAGACTT 59.830 37.037 17.00 0.00 0.00 3.01
2501 4364 3.134081 TCTTTTCTGGTCTGTCCGTTTCT 59.866 43.478 0.00 0.00 39.52 2.52
2511 4374 5.611374 TCGAAAGTTGATCTTTTCTGGTCT 58.389 37.500 12.67 0.00 45.15 3.85
2581 4444 0.244721 GGCACCAAGCTCCATGAAAC 59.755 55.000 0.00 0.00 44.79 2.78
2587 4450 2.202236 GATCCTGGCACCAAGCTCCA 62.202 60.000 0.00 0.00 44.79 3.86
2592 4455 0.537188 ACGTAGATCCTGGCACCAAG 59.463 55.000 0.00 0.00 0.00 3.61
2593 4456 0.535335 GACGTAGATCCTGGCACCAA 59.465 55.000 0.00 0.00 0.00 3.67
2594 4457 1.663379 CGACGTAGATCCTGGCACCA 61.663 60.000 0.00 0.00 0.00 4.17
2595 4458 1.065928 CGACGTAGATCCTGGCACC 59.934 63.158 0.00 0.00 0.00 5.01
2596 4459 0.669077 ATCGACGTAGATCCTGGCAC 59.331 55.000 5.23 0.00 0.00 5.01
2597 4460 1.337071 GAATCGACGTAGATCCTGGCA 59.663 52.381 11.75 0.00 0.00 4.92
2598 4461 1.609555 AGAATCGACGTAGATCCTGGC 59.390 52.381 11.75 0.53 0.00 4.85
2599 4462 3.546002 GAGAATCGACGTAGATCCTGG 57.454 52.381 11.75 0.00 0.00 4.45
2621 4484 3.839432 GAACCTCCCTCGGCTCGG 61.839 72.222 0.00 0.00 0.00 4.63
2635 4498 2.212869 TATGTATGTGTCGCCGGAAC 57.787 50.000 5.05 2.32 0.00 3.62
2639 4502 5.644902 TTACAATTATGTATGTGTCGCCG 57.355 39.130 0.00 0.00 41.51 6.46
2682 4565 2.732658 GCTATGGCATTGGCAGGC 59.267 61.111 18.37 18.92 42.43 4.85
2703 4586 3.108881 CAGTCAGAATACCGACACGATG 58.891 50.000 0.00 0.00 34.48 3.84
2704 4587 2.753452 ACAGTCAGAATACCGACACGAT 59.247 45.455 0.00 0.00 34.48 3.73
2705 4588 2.156917 ACAGTCAGAATACCGACACGA 58.843 47.619 0.00 0.00 34.48 4.35
2707 4590 3.851976 AGACAGTCAGAATACCGACAC 57.148 47.619 2.66 0.00 34.48 3.67
2708 4591 4.840271 TCTAGACAGTCAGAATACCGACA 58.160 43.478 2.66 0.00 34.48 4.35
2709 4592 6.380095 AATCTAGACAGTCAGAATACCGAC 57.620 41.667 2.66 0.00 0.00 4.79
2710 4593 8.515695 TTAAATCTAGACAGTCAGAATACCGA 57.484 34.615 2.66 0.00 0.00 4.69
2727 4610 6.238538 GGGAATTGACGGCGAATTTAAATCTA 60.239 38.462 16.62 0.00 0.00 1.98
2751 4634 1.621672 GGAGGGAGAGGTTGCAGAGG 61.622 65.000 0.00 0.00 0.00 3.69
2753 4636 0.616111 GAGGAGGGAGAGGTTGCAGA 60.616 60.000 0.00 0.00 0.00 4.26
2754 4637 0.906756 TGAGGAGGGAGAGGTTGCAG 60.907 60.000 0.00 0.00 0.00 4.41
2760 4643 1.190643 GACAACTGAGGAGGGAGAGG 58.809 60.000 0.00 0.00 0.00 3.69
2763 4646 1.974236 AGTTGACAACTGAGGAGGGAG 59.026 52.381 19.96 0.00 41.01 4.30
2765 4648 4.559862 ATTAGTTGACAACTGAGGAGGG 57.440 45.455 27.44 0.00 42.84 4.30
2773 4656 5.594317 AGCTTGTGGAAATTAGTTGACAACT 59.406 36.000 23.61 23.61 45.40 3.16
2774 4657 5.831997 AGCTTGTGGAAATTAGTTGACAAC 58.168 37.500 10.47 10.47 0.00 3.32
2777 4660 6.348540 CCAGTAGCTTGTGGAAATTAGTTGAC 60.349 42.308 8.09 0.00 35.67 3.18
2781 4664 5.013183 AGACCAGTAGCTTGTGGAAATTAGT 59.987 40.000 18.49 0.00 37.27 2.24
2782 4665 5.491982 AGACCAGTAGCTTGTGGAAATTAG 58.508 41.667 18.49 0.00 37.27 1.73
2784 4667 4.327680 GAGACCAGTAGCTTGTGGAAATT 58.672 43.478 18.49 0.00 37.27 1.82
2787 4670 1.623811 GGAGACCAGTAGCTTGTGGAA 59.376 52.381 18.49 0.00 37.27 3.53
2788 4671 1.267121 GGAGACCAGTAGCTTGTGGA 58.733 55.000 18.49 0.00 37.27 4.02
2789 4672 0.108615 CGGAGACCAGTAGCTTGTGG 60.109 60.000 11.59 11.59 39.98 4.17
2791 4674 0.900647 AGCGGAGACCAGTAGCTTGT 60.901 55.000 0.00 0.00 34.05 3.16
2792 4675 1.103803 TAGCGGAGACCAGTAGCTTG 58.896 55.000 0.00 0.00 39.14 4.01
2793 4676 2.074729 ATAGCGGAGACCAGTAGCTT 57.925 50.000 0.00 0.00 39.14 3.74
2794 4677 2.953284 TATAGCGGAGACCAGTAGCT 57.047 50.000 0.00 0.00 41.45 3.32
2795 4678 6.487331 ACATATATATAGCGGAGACCAGTAGC 59.513 42.308 0.00 0.00 0.00 3.58
2796 4679 7.520776 GCACATATATATAGCGGAGACCAGTAG 60.521 44.444 0.00 0.00 0.00 2.57
2797 4680 6.262496 GCACATATATATAGCGGAGACCAGTA 59.738 42.308 0.00 0.00 0.00 2.74
2798 4681 5.067936 GCACATATATATAGCGGAGACCAGT 59.932 44.000 0.00 0.00 0.00 4.00
2799 4682 5.067805 TGCACATATATATAGCGGAGACCAG 59.932 44.000 12.20 0.00 0.00 4.00
2800 4683 4.953579 TGCACATATATATAGCGGAGACCA 59.046 41.667 12.20 0.00 0.00 4.02
2801 4684 5.515797 TGCACATATATATAGCGGAGACC 57.484 43.478 12.20 0.00 0.00 3.85
2802 4685 8.568794 TCTATTGCACATATATATAGCGGAGAC 58.431 37.037 12.20 0.00 0.00 3.36
2879 4762 6.013466 ACCTTCCCACTATTTTGCATTGATTT 60.013 34.615 0.00 0.00 0.00 2.17
2888 4771 7.883311 TCTTTCTTCTACCTTCCCACTATTTTG 59.117 37.037 0.00 0.00 0.00 2.44
2893 4776 4.776308 GGTCTTTCTTCTACCTTCCCACTA 59.224 45.833 0.00 0.00 0.00 2.74
2906 4789 6.532988 ACCTGATACTACTGGTCTTTCTTC 57.467 41.667 0.00 0.00 37.51 2.87
2910 4793 5.280011 CCACAACCTGATACTACTGGTCTTT 60.280 44.000 0.00 0.00 40.31 2.52
2916 4799 5.670792 TTACCCACAACCTGATACTACTG 57.329 43.478 0.00 0.00 0.00 2.74
2917 4800 7.622479 ACTTATTACCCACAACCTGATACTACT 59.378 37.037 0.00 0.00 0.00 2.57
2918 4801 7.789026 ACTTATTACCCACAACCTGATACTAC 58.211 38.462 0.00 0.00 0.00 2.73
2919 4802 7.983166 ACTTATTACCCACAACCTGATACTA 57.017 36.000 0.00 0.00 0.00 1.82
2920 4803 6.886178 ACTTATTACCCACAACCTGATACT 57.114 37.500 0.00 0.00 0.00 2.12
2961 4844 1.400242 GCTTTAGTTTGGTGCGCAGAG 60.400 52.381 12.22 0.00 0.00 3.35
2967 4850 0.673437 TGCCAGCTTTAGTTTGGTGC 59.327 50.000 0.00 0.00 34.43 5.01
2987 4870 2.061773 GATCGCTATGGACAATGGTCG 58.938 52.381 0.00 0.00 45.28 4.79
2996 4879 3.961480 ATTTGGATCGATCGCTATGGA 57.039 42.857 18.81 0.00 0.00 3.41
3024 4907 8.899427 ACATTACATTCAAGAGTCATATCAGG 57.101 34.615 0.00 0.00 0.00 3.86
3029 4912 9.366216 GTGTGTACATTACATTCAAGAGTCATA 57.634 33.333 0.00 0.00 41.34 2.15
3030 4913 7.063426 CGTGTGTACATTACATTCAAGAGTCAT 59.937 37.037 0.00 0.00 41.34 3.06
3031 4914 6.364976 CGTGTGTACATTACATTCAAGAGTCA 59.635 38.462 0.00 0.00 41.34 3.41
3032 4915 6.669977 GCGTGTGTACATTACATTCAAGAGTC 60.670 42.308 0.00 0.00 41.34 3.36
3033 4916 5.120208 GCGTGTGTACATTACATTCAAGAGT 59.880 40.000 0.00 0.00 41.34 3.24
3034 4917 5.120053 TGCGTGTGTACATTACATTCAAGAG 59.880 40.000 0.00 0.00 41.34 2.85
3035 4918 4.991687 TGCGTGTGTACATTACATTCAAGA 59.008 37.500 0.00 0.00 41.34 3.02
3036 4919 5.079406 GTGCGTGTGTACATTACATTCAAG 58.921 41.667 0.00 0.00 41.34 3.02
3037 4920 4.511826 TGTGCGTGTGTACATTACATTCAA 59.488 37.500 0.00 0.00 41.34 2.69
3038 4921 4.058817 TGTGCGTGTGTACATTACATTCA 58.941 39.130 0.00 0.00 41.34 2.57
3039 4922 4.084276 TGTGTGCGTGTGTACATTACATTC 60.084 41.667 0.00 0.00 42.79 2.67
3040 4923 3.810386 TGTGTGCGTGTGTACATTACATT 59.190 39.130 0.00 0.00 42.79 2.71
3041 4924 3.185594 GTGTGTGCGTGTGTACATTACAT 59.814 43.478 0.00 0.00 42.79 2.29
3042 4925 2.540516 GTGTGTGCGTGTGTACATTACA 59.459 45.455 0.00 0.00 42.79 2.41
3043 4926 2.798283 AGTGTGTGCGTGTGTACATTAC 59.202 45.455 0.00 0.74 42.79 1.89
3044 4927 3.100658 AGTGTGTGCGTGTGTACATTA 57.899 42.857 0.00 0.00 42.79 1.90
3045 4928 1.948104 AGTGTGTGCGTGTGTACATT 58.052 45.000 0.00 0.00 42.79 2.71
3046 4929 2.295070 TCTAGTGTGTGCGTGTGTACAT 59.705 45.455 0.00 0.00 42.79 2.29
3047 4930 1.677052 TCTAGTGTGTGCGTGTGTACA 59.323 47.619 0.00 0.00 38.46 2.90
3075 4958 1.099879 GGCTGCGAAGGAAGATGCAT 61.100 55.000 0.00 0.00 36.64 3.96
3079 4962 0.543277 TGATGGCTGCGAAGGAAGAT 59.457 50.000 0.00 0.00 0.00 2.40
3088 4971 0.674581 TTTCAGGTCTGATGGCTGCG 60.675 55.000 1.16 0.00 39.64 5.18
3117 5010 5.359576 ACATGTTCCACAAAGCTGAACTAAA 59.640 36.000 13.23 0.00 39.24 1.85
3126 5019 6.039616 TGTAAGAAAACATGTTCCACAAAGC 58.960 36.000 12.39 0.00 0.00 3.51
3134 5027 7.532682 TTTTGGCTTGTAAGAAAACATGTTC 57.467 32.000 12.39 0.00 0.00 3.18
3143 5036 4.202111 GCTCTGGTTTTTGGCTTGTAAGAA 60.202 41.667 0.00 0.00 0.00 2.52
3174 5067 4.133078 CTCTGTCTTTTCCTGCACTTCTT 58.867 43.478 0.00 0.00 0.00 2.52
3203 5096 4.917385 TGTATAAGTTGTTCACCTGCCAT 58.083 39.130 0.00 0.00 0.00 4.40
3204 5097 4.359434 TGTATAAGTTGTTCACCTGCCA 57.641 40.909 0.00 0.00 0.00 4.92
3205 5098 4.760204 ACTTGTATAAGTTGTTCACCTGCC 59.240 41.667 0.00 0.00 44.57 4.85
3206 5099 5.941948 ACTTGTATAAGTTGTTCACCTGC 57.058 39.130 0.00 0.00 44.57 4.85
3207 5100 7.358931 CGTGTACTTGTATAAGTTGTTCACCTG 60.359 40.741 10.35 1.95 44.57 4.00
3208 5101 6.643770 CGTGTACTTGTATAAGTTGTTCACCT 59.356 38.462 10.35 0.00 44.57 4.00
3209 5102 6.421801 ACGTGTACTTGTATAAGTTGTTCACC 59.578 38.462 10.35 0.00 44.57 4.02
3211 5104 8.422973 AAACGTGTACTTGTATAAGTTGTTCA 57.577 30.769 10.35 3.35 44.57 3.18
3212 5105 9.706846 AAAAACGTGTACTTGTATAAGTTGTTC 57.293 29.630 10.35 1.01 44.57 3.18
3213 5106 9.706846 GAAAAACGTGTACTTGTATAAGTTGTT 57.293 29.630 10.35 9.89 44.57 2.83
3214 5107 8.337532 GGAAAAACGTGTACTTGTATAAGTTGT 58.662 33.333 10.35 2.46 44.57 3.32
3215 5108 8.553696 AGGAAAAACGTGTACTTGTATAAGTTG 58.446 33.333 10.35 1.88 44.57 3.16
3216 5109 8.667076 AGGAAAAACGTGTACTTGTATAAGTT 57.333 30.769 10.35 3.88 44.57 2.66
3218 5111 8.985805 AGAAGGAAAAACGTGTACTTGTATAAG 58.014 33.333 0.00 0.00 39.86 1.73
3219 5112 8.767085 CAGAAGGAAAAACGTGTACTTGTATAA 58.233 33.333 0.00 0.00 0.00 0.98
3220 5113 7.385752 CCAGAAGGAAAAACGTGTACTTGTATA 59.614 37.037 0.00 0.00 36.89 1.47
3221 5114 6.204108 CCAGAAGGAAAAACGTGTACTTGTAT 59.796 38.462 0.00 0.00 36.89 2.29
3222 5115 5.524646 CCAGAAGGAAAAACGTGTACTTGTA 59.475 40.000 0.00 0.00 36.89 2.41
3223 5116 4.334481 CCAGAAGGAAAAACGTGTACTTGT 59.666 41.667 0.00 0.00 36.89 3.16
3224 5117 4.573201 TCCAGAAGGAAAAACGTGTACTTG 59.427 41.667 0.00 0.00 42.23 3.16
3225 5118 4.773013 TCCAGAAGGAAAAACGTGTACTT 58.227 39.130 0.00 0.00 42.23 2.24
3226 5119 4.411256 TCCAGAAGGAAAAACGTGTACT 57.589 40.909 0.00 0.00 42.23 2.73
3238 5131 3.397527 AGGGCAGATTATTCCAGAAGGA 58.602 45.455 0.00 0.00 43.93 3.36
3239 5132 3.872459 AGGGCAGATTATTCCAGAAGG 57.128 47.619 0.00 0.00 0.00 3.46
3240 5133 6.595682 TCTTTAGGGCAGATTATTCCAGAAG 58.404 40.000 0.00 0.00 0.00 2.85
3241 5134 6.575244 TCTTTAGGGCAGATTATTCCAGAA 57.425 37.500 0.00 0.00 0.00 3.02
3242 5135 6.575244 TTCTTTAGGGCAGATTATTCCAGA 57.425 37.500 0.00 0.00 0.00 3.86
3243 5136 7.484140 GTTTTCTTTAGGGCAGATTATTCCAG 58.516 38.462 0.00 0.00 0.00 3.86
3244 5137 6.094881 CGTTTTCTTTAGGGCAGATTATTCCA 59.905 38.462 0.00 0.00 0.00 3.53
3245 5138 6.095021 ACGTTTTCTTTAGGGCAGATTATTCC 59.905 38.462 0.00 0.00 0.00 3.01
3246 5139 6.967199 CACGTTTTCTTTAGGGCAGATTATTC 59.033 38.462 0.00 0.00 0.00 1.75
3247 5140 6.625081 GCACGTTTTCTTTAGGGCAGATTATT 60.625 38.462 0.00 0.00 0.00 1.40
3248 5141 5.163652 GCACGTTTTCTTTAGGGCAGATTAT 60.164 40.000 0.00 0.00 0.00 1.28
3249 5142 4.155280 GCACGTTTTCTTTAGGGCAGATTA 59.845 41.667 0.00 0.00 0.00 1.75
3250 5143 3.057526 GCACGTTTTCTTTAGGGCAGATT 60.058 43.478 0.00 0.00 0.00 2.40
3251 5144 2.488153 GCACGTTTTCTTTAGGGCAGAT 59.512 45.455 0.00 0.00 0.00 2.90
3252 5145 1.877443 GCACGTTTTCTTTAGGGCAGA 59.123 47.619 0.00 0.00 0.00 4.26
3253 5146 1.606668 TGCACGTTTTCTTTAGGGCAG 59.393 47.619 0.00 0.00 0.00 4.85
3254 5147 1.606668 CTGCACGTTTTCTTTAGGGCA 59.393 47.619 0.00 0.00 0.00 5.36
3255 5148 1.666023 GCTGCACGTTTTCTTTAGGGC 60.666 52.381 0.00 0.00 0.00 5.19
3256 5149 1.068541 GGCTGCACGTTTTCTTTAGGG 60.069 52.381 0.50 0.00 0.00 3.53
3257 5150 1.880027 AGGCTGCACGTTTTCTTTAGG 59.120 47.619 0.50 0.00 0.00 2.69
3258 5151 3.626028 AAGGCTGCACGTTTTCTTTAG 57.374 42.857 0.50 0.00 0.00 1.85
3259 5152 3.378742 TGAAAGGCTGCACGTTTTCTTTA 59.621 39.130 0.50 0.00 36.52 1.85
3260 5153 2.165437 TGAAAGGCTGCACGTTTTCTTT 59.835 40.909 0.50 0.00 36.52 2.52
3261 5154 1.748493 TGAAAGGCTGCACGTTTTCTT 59.252 42.857 0.50 0.00 36.52 2.52
3262 5155 1.334869 CTGAAAGGCTGCACGTTTTCT 59.665 47.619 0.50 0.00 36.52 2.52
3263 5156 1.065551 ACTGAAAGGCTGCACGTTTTC 59.934 47.619 0.50 6.60 39.30 2.29
3264 5157 1.102978 ACTGAAAGGCTGCACGTTTT 58.897 45.000 0.50 0.00 39.30 2.43
3265 5158 1.961793 TACTGAAAGGCTGCACGTTT 58.038 45.000 0.50 6.65 39.30 3.60
3266 5159 1.602377 GTTACTGAAAGGCTGCACGTT 59.398 47.619 0.50 0.00 39.30 3.99
3267 5160 1.226746 GTTACTGAAAGGCTGCACGT 58.773 50.000 0.50 0.00 39.30 4.49
3268 5161 1.195448 CTGTTACTGAAAGGCTGCACG 59.805 52.381 0.50 0.00 39.30 5.34
3269 5162 2.494059 TCTGTTACTGAAAGGCTGCAC 58.506 47.619 0.50 0.00 39.30 4.57
3270 5163 2.928801 TCTGTTACTGAAAGGCTGCA 57.071 45.000 0.50 0.00 39.30 4.41
3271 5164 3.119708 CCATTCTGTTACTGAAAGGCTGC 60.120 47.826 11.97 0.00 39.30 5.25
3272 5165 3.441572 CCCATTCTGTTACTGAAAGGCTG 59.558 47.826 17.01 8.04 39.30 4.85
3273 5166 3.690460 CCCATTCTGTTACTGAAAGGCT 58.310 45.455 17.01 0.00 39.30 4.58
3274 5167 2.164422 GCCCATTCTGTTACTGAAAGGC 59.836 50.000 22.96 22.96 39.30 4.35
3275 5168 2.420022 CGCCCATTCTGTTACTGAAAGG 59.580 50.000 15.94 15.94 39.30 3.11
3276 5169 3.334691 TCGCCCATTCTGTTACTGAAAG 58.665 45.455 8.64 4.73 42.29 2.62
3277 5170 3.410631 TCGCCCATTCTGTTACTGAAA 57.589 42.857 8.64 0.00 0.00 2.69
3278 5171 3.410631 TTCGCCCATTCTGTTACTGAA 57.589 42.857 7.11 7.11 0.00 3.02
3279 5172 3.410631 TTTCGCCCATTCTGTTACTGA 57.589 42.857 0.00 0.00 0.00 3.41
3280 5173 3.666902 CGTTTTCGCCCATTCTGTTACTG 60.667 47.826 0.00 0.00 36.22 2.74
3281 5174 2.482721 CGTTTTCGCCCATTCTGTTACT 59.517 45.455 0.00 0.00 36.22 2.24
3282 5175 2.846693 CGTTTTCGCCCATTCTGTTAC 58.153 47.619 0.00 0.00 36.22 2.50
3295 5188 0.384725 CAGAAGGCTGCACGTTTTCG 60.385 55.000 0.50 0.00 41.43 3.46
3296 5189 0.040067 CCAGAAGGCTGCACGTTTTC 60.040 55.000 0.50 0.00 40.91 2.29
3297 5190 0.465460 TCCAGAAGGCTGCACGTTTT 60.465 50.000 0.50 0.00 40.91 2.43
3298 5191 0.886490 CTCCAGAAGGCTGCACGTTT 60.886 55.000 0.50 0.00 40.91 3.60
3299 5192 1.302033 CTCCAGAAGGCTGCACGTT 60.302 57.895 0.50 0.00 40.91 3.99
3300 5193 1.185618 TACTCCAGAAGGCTGCACGT 61.186 55.000 0.50 0.00 40.91 4.49
3301 5194 0.176680 ATACTCCAGAAGGCTGCACG 59.823 55.000 0.50 0.00 40.91 5.34
3302 5195 1.484240 AGATACTCCAGAAGGCTGCAC 59.516 52.381 0.50 0.00 40.91 4.57
3303 5196 1.871418 AGATACTCCAGAAGGCTGCA 58.129 50.000 0.50 0.00 40.91 4.41
3304 5197 3.801983 GCTTAGATACTCCAGAAGGCTGC 60.802 52.174 0.00 0.00 40.91 5.25
3305 5198 3.640967 AGCTTAGATACTCCAGAAGGCTG 59.359 47.826 0.00 0.00 41.93 4.85
3306 5199 3.922375 AGCTTAGATACTCCAGAAGGCT 58.078 45.455 0.00 0.00 33.74 4.58
3307 5200 4.830600 AGTAGCTTAGATACTCCAGAAGGC 59.169 45.833 4.13 0.00 33.74 4.35
3308 5201 6.303839 AGAGTAGCTTAGATACTCCAGAAGG 58.696 44.000 27.45 0.00 46.84 3.46
3309 5202 8.154856 ACTAGAGTAGCTTAGATACTCCAGAAG 58.845 40.741 29.34 22.87 46.84 2.85
3310 5203 8.036585 ACTAGAGTAGCTTAGATACTCCAGAA 57.963 38.462 29.34 15.57 46.84 3.02
3311 5204 7.621006 ACTAGAGTAGCTTAGATACTCCAGA 57.379 40.000 29.34 17.36 46.84 3.86
3312 5205 8.997621 CTACTAGAGTAGCTTAGATACTCCAG 57.002 42.308 27.45 25.61 46.84 3.86
3327 5220 5.163509 CCATTCTGTTGCTGCTACTAGAGTA 60.164 44.000 14.81 0.00 0.00 2.59
3328 5221 4.382470 CCATTCTGTTGCTGCTACTAGAGT 60.382 45.833 14.81 9.75 0.00 3.24
3329 5222 4.118410 CCATTCTGTTGCTGCTACTAGAG 58.882 47.826 14.81 4.99 0.00 2.43
3330 5223 3.118629 CCCATTCTGTTGCTGCTACTAGA 60.119 47.826 14.81 12.28 0.00 2.43
3331 5224 3.201290 CCCATTCTGTTGCTGCTACTAG 58.799 50.000 14.81 10.46 0.00 2.57
3332 5225 2.680805 GCCCATTCTGTTGCTGCTACTA 60.681 50.000 14.81 1.37 0.00 1.82
3333 5226 1.952367 GCCCATTCTGTTGCTGCTACT 60.952 52.381 14.81 0.00 0.00 2.57
3334 5227 0.453390 GCCCATTCTGTTGCTGCTAC 59.547 55.000 7.29 7.29 0.00 3.58
3335 5228 0.038021 TGCCCATTCTGTTGCTGCTA 59.962 50.000 0.00 0.00 0.00 3.49
3336 5229 0.828762 TTGCCCATTCTGTTGCTGCT 60.829 50.000 0.00 0.00 0.00 4.24
3337 5230 0.033781 TTTGCCCATTCTGTTGCTGC 59.966 50.000 0.00 0.00 0.00 5.25
3338 5231 2.529780 TTTTGCCCATTCTGTTGCTG 57.470 45.000 0.00 0.00 0.00 4.41
3355 5248 2.583143 AGGAACTAAGCTGGCGTTTTT 58.417 42.857 0.00 0.00 36.02 1.94
3356 5249 2.271944 AGGAACTAAGCTGGCGTTTT 57.728 45.000 0.00 0.00 36.02 2.43
3357 5250 2.271944 AAGGAACTAAGCTGGCGTTT 57.728 45.000 0.00 0.00 38.49 3.60
3358 5251 2.152016 GAAAGGAACTAAGCTGGCGTT 58.848 47.619 0.00 0.00 38.49 4.84
3359 5252 1.809684 GAAAGGAACTAAGCTGGCGT 58.190 50.000 0.00 0.00 38.49 5.68
3360 5253 0.721718 CGAAAGGAACTAAGCTGGCG 59.278 55.000 0.00 0.00 38.49 5.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.