Multiple sequence alignment - TraesCS6D01G024700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G024700 chr6D 100.000 9100 0 0 1 9100 9373893 9364794 0.000000e+00 16805.0
1 TraesCS6D01G024700 chr6D 90.711 1787 101 29 7306 9087 9388750 9390476 0.000000e+00 2320.0
2 TraesCS6D01G024700 chr6D 91.245 731 46 4 917 1638 9387275 9387996 0.000000e+00 979.0
3 TraesCS6D01G024700 chr6D 95.216 439 21 0 1740 2178 9388319 9388757 0.000000e+00 695.0
4 TraesCS6D01G024700 chr6D 98.847 347 4 0 6961 7307 9371718 9371372 3.610000e-173 619.0
5 TraesCS6D01G024700 chr6D 83.234 334 44 8 418 742 9386787 9387117 6.910000e-76 296.0
6 TraesCS6D01G024700 chr6D 79.811 317 56 5 555 867 455095141 455095453 3.310000e-54 224.0
7 TraesCS6D01G024700 chr6D 100.000 41 0 0 152 192 397055450 397055410 9.800000e-10 76.8
8 TraesCS6D01G024700 chr6D 95.455 44 2 0 875 918 9387193 9387236 4.560000e-08 71.3
9 TraesCS6D01G024700 chr1D 95.460 5154 194 17 2176 7306 59546648 59541512 0.000000e+00 8185.0
10 TraesCS6D01G024700 chr1D 89.738 1374 132 6 2175 3543 5084984 5086353 0.000000e+00 1748.0
11 TraesCS6D01G024700 chr7D 95.382 5132 205 15 2198 7305 386521270 386526393 0.000000e+00 8135.0
12 TraesCS6D01G024700 chr7D 81.424 323 47 9 556 867 16909719 16909399 1.520000e-62 252.0
13 TraesCS6D01G024700 chr7D 87.013 77 8 2 8958 9032 175611152 175611076 1.630000e-12 86.1
14 TraesCS6D01G024700 chrUn 95.001 5081 236 15 2239 7305 156705642 156710718 0.000000e+00 7960.0
15 TraesCS6D01G024700 chrUn 93.548 217 14 0 1713 1929 479619557 479619773 3.170000e-84 324.0
16 TraesCS6D01G024700 chrUn 87.805 123 14 1 1582 1703 479619381 479619503 9.520000e-30 143.0
17 TraesCS6D01G024700 chrUn 91.000 100 8 1 383 482 466238826 466238728 5.730000e-27 134.0
18 TraesCS6D01G024700 chrUn 96.721 61 2 0 66 126 389367605 389367665 1.620000e-17 102.0
19 TraesCS6D01G024700 chrUn 95.082 61 3 0 66 126 389316288 389316228 7.520000e-16 97.1
20 TraesCS6D01G024700 chr3B 93.567 5161 293 20 2176 7302 478042776 478047931 0.000000e+00 7655.0
21 TraesCS6D01G024700 chr3B 91.099 2674 222 13 4608 7268 547157367 547154697 0.000000e+00 3605.0
22 TraesCS6D01G024700 chr3B 90.138 2464 216 21 2176 4619 547172951 547170495 0.000000e+00 3179.0
23 TraesCS6D01G024700 chr3A 93.248 5154 321 19 2176 7308 84657163 84652016 0.000000e+00 7564.0
24 TraesCS6D01G024700 chr3A 79.743 311 55 4 555 861 694532404 694532710 1.540000e-52 219.0
25 TraesCS6D01G024700 chr3A 81.890 254 44 2 555 806 633846902 633846649 7.160000e-51 213.0
26 TraesCS6D01G024700 chr4A 93.148 5166 313 18 2176 7305 175813692 175808532 0.000000e+00 7540.0
27 TraesCS6D01G024700 chr4A 96.721 61 2 0 66 126 605364535 605364595 1.620000e-17 102.0
28 TraesCS6D01G024700 chr4A 82.353 119 18 3 8934 9051 89907854 89907738 5.810000e-17 100.0
29 TraesCS6D01G024700 chr5B 92.129 5158 376 23 2176 7308 508605872 508600720 0.000000e+00 7249.0
30 TraesCS6D01G024700 chr6B 90.314 5152 471 19 2176 7305 692099468 692104613 0.000000e+00 6724.0
31 TraesCS6D01G024700 chr6A 96.456 1806 45 6 7306 9097 11158672 11160472 0.000000e+00 2963.0
32 TraesCS6D01G024700 chr6A 91.293 1516 109 12 198 1703 10372866 10371364 0.000000e+00 2047.0
33 TraesCS6D01G024700 chr6A 91.299 1517 107 14 198 1703 10401553 10400051 0.000000e+00 2047.0
34 TraesCS6D01G024700 chr6A 90.353 1586 102 23 7420 9003 10444605 10446141 0.000000e+00 2034.0
35 TraesCS6D01G024700 chr6A 92.658 790 51 4 917 1703 11157354 11158139 0.000000e+00 1131.0
36 TraesCS6D01G024700 chr6A 89.883 771 56 6 917 1678 10385605 10386362 0.000000e+00 972.0
37 TraesCS6D01G024700 chr6A 89.780 773 57 6 917 1680 10421987 10422746 0.000000e+00 970.0
38 TraesCS6D01G024700 chr6A 96.195 473 17 1 1713 2184 11158214 11158686 0.000000e+00 773.0
39 TraesCS6D01G024700 chr6A 94.538 476 23 3 1713 2187 10371310 10370837 0.000000e+00 732.0
40 TraesCS6D01G024700 chr6A 94.538 476 23 3 1713 2187 10399997 10399524 0.000000e+00 732.0
41 TraesCS6D01G024700 chr6A 94.231 468 22 3 7306 7769 10399540 10399074 0.000000e+00 710.0
42 TraesCS6D01G024700 chr6A 94.017 468 23 3 7306 7769 10370853 10370387 0.000000e+00 704.0
43 TraesCS6D01G024700 chr6A 93.051 331 23 0 1713 2043 10386444 10386774 1.370000e-132 484.0
44 TraesCS6D01G024700 chr6A 92.749 331 24 0 1713 2043 10422827 10423157 6.390000e-131 479.0
45 TraesCS6D01G024700 chr6A 86.275 204 22 2 383 581 11143411 11143613 5.530000e-52 217.0
46 TraesCS6D01G024700 chr6A 78.806 335 43 14 418 742 10385131 10385447 5.570000e-47 200.0
47 TraesCS6D01G024700 chr6A 78.507 335 44 14 418 742 10421513 10421829 2.590000e-45 195.0
48 TraesCS6D01G024700 chr6A 91.860 86 6 1 9003 9087 10446382 10446467 1.610000e-22 119.0
49 TraesCS6D01G024700 chr6A 100.000 41 0 0 152 192 543379771 543379731 9.800000e-10 76.8
50 TraesCS6D01G024700 chr6A 95.455 44 2 0 875 918 10385523 10385566 4.560000e-08 71.3
51 TraesCS6D01G024700 chr6A 95.455 44 2 0 875 918 10421905 10421948 4.560000e-08 71.3
52 TraesCS6D01G024700 chr3D 99.206 126 1 0 1 126 24745553 24745428 2.560000e-55 228.0
53 TraesCS6D01G024700 chr3D 97.619 126 3 0 1 126 306007319 306007194 5.530000e-52 217.0
54 TraesCS6D01G024700 chr2B 79.538 303 56 5 564 861 793341757 793341456 2.570000e-50 211.0
55 TraesCS6D01G024700 chr2B 72.296 527 136 7 7476 7997 28257249 28257770 1.220000e-33 156.0
56 TraesCS6D01G024700 chr2D 80.208 288 49 5 562 847 453617435 453617154 9.260000e-50 209.0
57 TraesCS6D01G024700 chr4B 81.250 144 18 5 8909 9051 461165904 461166039 3.470000e-19 108.0
58 TraesCS6D01G024700 chr7A 87.179 78 8 2 8958 9033 177269464 177269387 4.530000e-13 87.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G024700 chr6D 9364794 9373893 9099 True 8712.000000 16805 99.423500 1 9100 2 chr6D.!!$R2 9099
1 TraesCS6D01G024700 chr6D 9386787 9390476 3689 False 872.260000 2320 91.172200 418 9087 5 chr6D.!!$F2 8669
2 TraesCS6D01G024700 chr1D 59541512 59546648 5136 True 8185.000000 8185 95.460000 2176 7306 1 chr1D.!!$R1 5130
3 TraesCS6D01G024700 chr1D 5084984 5086353 1369 False 1748.000000 1748 89.738000 2175 3543 1 chr1D.!!$F1 1368
4 TraesCS6D01G024700 chr7D 386521270 386526393 5123 False 8135.000000 8135 95.382000 2198 7305 1 chr7D.!!$F1 5107
5 TraesCS6D01G024700 chrUn 156705642 156710718 5076 False 7960.000000 7960 95.001000 2239 7305 1 chrUn.!!$F1 5066
6 TraesCS6D01G024700 chr3B 478042776 478047931 5155 False 7655.000000 7655 93.567000 2176 7302 1 chr3B.!!$F1 5126
7 TraesCS6D01G024700 chr3B 547154697 547157367 2670 True 3605.000000 3605 91.099000 4608 7268 1 chr3B.!!$R1 2660
8 TraesCS6D01G024700 chr3B 547170495 547172951 2456 True 3179.000000 3179 90.138000 2176 4619 1 chr3B.!!$R2 2443
9 TraesCS6D01G024700 chr3A 84652016 84657163 5147 True 7564.000000 7564 93.248000 2176 7308 1 chr3A.!!$R1 5132
10 TraesCS6D01G024700 chr4A 175808532 175813692 5160 True 7540.000000 7540 93.148000 2176 7305 1 chr4A.!!$R2 5129
11 TraesCS6D01G024700 chr5B 508600720 508605872 5152 True 7249.000000 7249 92.129000 2176 7308 1 chr5B.!!$R1 5132
12 TraesCS6D01G024700 chr6B 692099468 692104613 5145 False 6724.000000 6724 90.314000 2176 7305 1 chr6B.!!$F1 5129
13 TraesCS6D01G024700 chr6A 11157354 11160472 3118 False 1622.333333 2963 95.103000 917 9097 3 chr6A.!!$F5 8180
14 TraesCS6D01G024700 chr6A 10399074 10401553 2479 True 1163.000000 2047 93.356000 198 7769 3 chr6A.!!$R3 7571
15 TraesCS6D01G024700 chr6A 10370387 10372866 2479 True 1161.000000 2047 93.282667 198 7769 3 chr6A.!!$R2 7571
16 TraesCS6D01G024700 chr6A 10444605 10446467 1862 False 1076.500000 2034 91.106500 7420 9087 2 chr6A.!!$F4 1667
17 TraesCS6D01G024700 chr6A 10385131 10386774 1643 False 431.825000 972 89.298750 418 2043 4 chr6A.!!$F2 1625
18 TraesCS6D01G024700 chr6A 10421513 10423157 1644 False 428.825000 970 89.122750 418 2043 4 chr6A.!!$F3 1625

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
723 731 0.026027 CGACTACGAGGCGTCTGTAC 59.974 60.000 0.00 0.0 42.99 2.90 F
792 801 0.759346 CTCATAGGGGTAGGGTGTGC 59.241 60.000 0.00 0.0 0.00 4.57 F
964 1023 1.091771 CACCAAGCCATCGCACTAGG 61.092 60.000 0.00 0.0 37.52 3.02 F
1129 1188 1.230324 GACAACCACAAGGAGAGCAC 58.770 55.000 0.00 0.0 38.69 4.40 F
1325 1384 1.246056 GCAGCCATGGCAGTTCTTCA 61.246 55.000 37.18 0.0 44.88 3.02 F
2001 2307 1.358152 TAGGTGGGTTCAACCTGGAG 58.642 55.000 6.51 0.0 38.64 3.86 F
2031 2338 1.530013 CCAAGTTGGCAAGGCTGGAG 61.530 60.000 9.46 0.0 0.00 3.86 F
3328 3669 2.103042 GGTCATGACGGAGCAGCAC 61.103 63.158 19.33 0.0 35.43 4.40 F
4651 4993 1.080772 CAGCAGAACGGCGTAGTCA 60.081 57.895 15.20 0.0 39.27 3.41 F
5087 5431 0.038159 CACCTTCTCCGTCGAGCTTT 60.038 55.000 0.00 0.0 35.94 3.51 F
5093 5437 0.169672 CTCCGTCGAGCTTTAACCGA 59.830 55.000 0.00 0.0 0.00 4.69 F
5330 5674 0.319297 GTACCGCACGTTGGAGAACT 60.319 55.000 10.48 0.0 0.00 3.01 F
6419 6766 0.902531 AAGGTATGTAGCAGGCACGT 59.097 50.000 0.00 0.0 0.00 4.49 F
7310 7693 0.103208 GAGCGACCCTGACAATCGAT 59.897 55.000 7.42 0.0 38.10 3.59 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2031 2338 1.065418 CACACCATCCTCCTTACCACC 60.065 57.143 0.00 0.00 0.00 4.61 R
2439 2766 1.210870 GCGTCACGTTCAACCTTGTA 58.789 50.000 0.00 0.00 0.00 2.41 R
2882 3221 4.675029 CGGCCCGGAACAGAACGT 62.675 66.667 0.73 0.00 0.00 3.99 R
3022 3361 0.171455 GTGATCTGCTCGAACTCCGT 59.829 55.000 0.00 0.00 39.75 4.69 R
3197 3538 0.318762 GTCAGGTCAAGGAGCGTCTT 59.681 55.000 0.00 0.00 35.00 3.01 R
3311 3652 1.079543 AGTGCTGCTCCGTCATGAC 60.080 57.895 16.21 16.21 0.00 3.06 R
3489 3830 3.049674 CGTTGCCGGTGCTGTCAT 61.050 61.111 1.90 0.00 38.71 3.06 R
4906 5248 0.180171 CGAGGAATACCATGGGTGCA 59.820 55.000 18.09 0.00 36.19 4.57 R
6637 6984 0.323725 GAGCCAGCCAAATCCCTTGA 60.324 55.000 0.00 0.00 37.17 3.02 R
6868 7215 0.387929 TGAGTCGTCCGAGTGCTTTT 59.612 50.000 1.08 0.00 0.00 2.27 R
7137 7503 1.737793 GTGCCACGATCCCTAAAACTG 59.262 52.381 0.00 0.00 0.00 3.16 R
7224 7600 1.210870 GCGTCACGTTCAACCTTGTA 58.789 50.000 0.00 0.00 0.00 2.41 R
7688 8075 2.003548 GGAGAGGTGGGGCAGGAAT 61.004 63.158 0.00 0.00 0.00 3.01 R
8736 9149 5.072193 AGCCCTGAAAATTGACAAAAGGAAT 59.928 36.000 0.00 0.00 0.00 3.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 3.877508 AGGAAGAAAAAGTTGTGAGGTCG 59.122 43.478 0.00 0.00 0.00 4.79
23 24 3.875134 GGAAGAAAAAGTTGTGAGGTCGA 59.125 43.478 0.00 0.00 0.00 4.20
24 25 4.515567 GGAAGAAAAAGTTGTGAGGTCGAT 59.484 41.667 0.00 0.00 0.00 3.59
25 26 5.334182 GGAAGAAAAAGTTGTGAGGTCGATC 60.334 44.000 0.00 0.00 0.00 3.69
26 27 4.962155 AGAAAAAGTTGTGAGGTCGATCT 58.038 39.130 0.00 0.00 0.00 2.75
27 28 6.097915 AGAAAAAGTTGTGAGGTCGATCTA 57.902 37.500 0.00 0.00 0.00 1.98
28 29 6.159988 AGAAAAAGTTGTGAGGTCGATCTAG 58.840 40.000 0.00 0.00 0.00 2.43
29 30 4.457834 AAAGTTGTGAGGTCGATCTAGG 57.542 45.455 0.00 0.00 0.00 3.02
30 31 3.367646 AGTTGTGAGGTCGATCTAGGA 57.632 47.619 0.00 0.00 0.00 2.94
31 32 3.698289 AGTTGTGAGGTCGATCTAGGAA 58.302 45.455 0.00 0.00 0.00 3.36
32 33 3.697045 AGTTGTGAGGTCGATCTAGGAAG 59.303 47.826 0.00 0.00 0.00 3.46
33 34 3.646736 TGTGAGGTCGATCTAGGAAGA 57.353 47.619 0.00 0.00 35.80 2.87
34 35 3.546724 TGTGAGGTCGATCTAGGAAGAG 58.453 50.000 0.00 0.00 34.49 2.85
35 36 3.200165 TGTGAGGTCGATCTAGGAAGAGA 59.800 47.826 0.00 0.00 34.49 3.10
36 37 3.813166 GTGAGGTCGATCTAGGAAGAGAG 59.187 52.174 0.00 0.00 34.49 3.20
37 38 3.712218 TGAGGTCGATCTAGGAAGAGAGA 59.288 47.826 0.00 0.00 34.49 3.10
38 39 4.202315 TGAGGTCGATCTAGGAAGAGAGAG 60.202 50.000 0.00 0.00 34.49 3.20
39 40 2.812011 GGTCGATCTAGGAAGAGAGAGC 59.188 54.545 0.00 0.00 34.49 4.09
40 41 2.812011 GTCGATCTAGGAAGAGAGAGCC 59.188 54.545 0.00 0.00 34.49 4.70
41 42 2.439880 TCGATCTAGGAAGAGAGAGCCA 59.560 50.000 0.00 0.00 34.49 4.75
42 43 2.813754 CGATCTAGGAAGAGAGAGCCAG 59.186 54.545 0.00 0.00 34.49 4.85
43 44 2.746279 TCTAGGAAGAGAGAGCCAGG 57.254 55.000 0.00 0.00 0.00 4.45
44 45 2.209758 TCTAGGAAGAGAGAGCCAGGA 58.790 52.381 0.00 0.00 0.00 3.86
45 46 2.092103 TCTAGGAAGAGAGAGCCAGGAC 60.092 54.545 0.00 0.00 0.00 3.85
46 47 0.682855 AGGAAGAGAGAGCCAGGACG 60.683 60.000 0.00 0.00 0.00 4.79
47 48 1.140804 GAAGAGAGAGCCAGGACGC 59.859 63.158 0.00 0.00 0.00 5.19
48 49 2.291457 GAAGAGAGAGCCAGGACGCC 62.291 65.000 0.00 0.00 0.00 5.68
49 50 3.071206 GAGAGAGCCAGGACGCCA 61.071 66.667 0.00 0.00 0.00 5.69
50 51 2.604686 AGAGAGCCAGGACGCCAA 60.605 61.111 0.00 0.00 0.00 4.52
51 52 1.965754 GAGAGAGCCAGGACGCCAAT 61.966 60.000 0.00 0.00 0.00 3.16
52 53 1.522580 GAGAGCCAGGACGCCAATC 60.523 63.158 0.00 0.00 0.00 2.67
53 54 2.244117 GAGAGCCAGGACGCCAATCA 62.244 60.000 0.00 0.00 0.00 2.57
54 55 1.817099 GAGCCAGGACGCCAATCAG 60.817 63.158 0.00 0.00 0.00 2.90
55 56 2.244117 GAGCCAGGACGCCAATCAGA 62.244 60.000 0.00 0.00 0.00 3.27
56 57 1.153086 GCCAGGACGCCAATCAGAT 60.153 57.895 0.00 0.00 0.00 2.90
57 58 1.162800 GCCAGGACGCCAATCAGATC 61.163 60.000 0.00 0.00 0.00 2.75
58 59 0.467384 CCAGGACGCCAATCAGATCT 59.533 55.000 0.00 0.00 0.00 2.75
59 60 1.579698 CAGGACGCCAATCAGATCTG 58.420 55.000 17.07 17.07 0.00 2.90
60 61 0.179062 AGGACGCCAATCAGATCTGC 60.179 55.000 18.36 4.84 0.00 4.26
61 62 1.162800 GGACGCCAATCAGATCTGCC 61.163 60.000 18.36 6.91 0.00 4.85
62 63 1.493950 GACGCCAATCAGATCTGCCG 61.494 60.000 18.36 15.51 0.00 5.69
63 64 1.522355 CGCCAATCAGATCTGCCGT 60.522 57.895 18.36 3.64 0.00 5.68
64 65 1.493950 CGCCAATCAGATCTGCCGTC 61.494 60.000 18.36 5.02 0.00 4.79
65 66 1.493950 GCCAATCAGATCTGCCGTCG 61.494 60.000 18.36 5.22 0.00 5.12
66 67 0.103026 CCAATCAGATCTGCCGTCGA 59.897 55.000 18.36 0.00 0.00 4.20
67 68 1.485397 CAATCAGATCTGCCGTCGAG 58.515 55.000 18.36 0.00 0.00 4.04
68 69 0.387202 AATCAGATCTGCCGTCGAGG 59.613 55.000 18.36 0.00 44.97 4.63
69 70 0.466372 ATCAGATCTGCCGTCGAGGA 60.466 55.000 18.36 0.00 45.00 3.71
70 71 0.679960 TCAGATCTGCCGTCGAGGAA 60.680 55.000 18.36 0.00 45.00 3.36
71 72 0.526524 CAGATCTGCCGTCGAGGAAC 60.527 60.000 10.38 0.00 45.00 3.62
72 73 1.586564 GATCTGCCGTCGAGGAACG 60.587 63.158 6.70 0.00 45.00 3.95
73 74 3.701604 ATCTGCCGTCGAGGAACGC 62.702 63.158 6.70 2.22 45.00 4.84
77 78 4.831307 CCGTCGAGGAACGCCGAG 62.831 72.222 6.70 0.00 46.15 4.63
78 79 4.831307 CGTCGAGGAACGCCGAGG 62.831 72.222 0.00 0.00 46.15 4.63
79 80 3.437795 GTCGAGGAACGCCGAGGA 61.438 66.667 0.00 0.00 38.67 3.71
80 81 2.674033 TCGAGGAACGCCGAGGAA 60.674 61.111 0.00 0.00 42.26 3.36
81 82 2.260434 CGAGGAACGCCGAGGAAA 59.740 61.111 0.00 0.00 39.96 3.13
82 83 1.373748 CGAGGAACGCCGAGGAAAA 60.374 57.895 0.00 0.00 39.96 2.29
83 84 1.623973 CGAGGAACGCCGAGGAAAAC 61.624 60.000 0.00 0.00 39.96 2.43
84 85 1.623973 GAGGAACGCCGAGGAAAACG 61.624 60.000 0.00 0.00 39.96 3.60
85 86 1.665599 GGAACGCCGAGGAAAACGA 60.666 57.895 0.00 0.00 0.00 3.85
86 87 1.490258 GAACGCCGAGGAAAACGAC 59.510 57.895 0.00 0.00 0.00 4.34
87 88 2.206825 GAACGCCGAGGAAAACGACG 62.207 60.000 0.00 0.00 41.66 5.12
88 89 4.130281 CGCCGAGGAAAACGACGC 62.130 66.667 0.00 0.00 30.00 5.19
89 90 3.785499 GCCGAGGAAAACGACGCC 61.785 66.667 0.00 0.00 0.00 5.68
90 91 3.475774 CCGAGGAAAACGACGCCG 61.476 66.667 0.00 0.00 42.50 6.46
91 92 3.475774 CGAGGAAAACGACGCCGG 61.476 66.667 0.00 0.00 40.78 6.13
92 93 3.785499 GAGGAAAACGACGCCGGC 61.785 66.667 19.07 19.07 40.78 6.13
95 96 4.379143 GAAAACGACGCCGGCCAC 62.379 66.667 23.46 14.28 40.78 5.01
96 97 4.922026 AAAACGACGCCGGCCACT 62.922 61.111 23.46 2.53 40.78 4.00
105 106 4.514577 CCGGCCACTGTAGCGGAG 62.515 72.222 2.24 0.00 32.72 4.63
106 107 4.514577 CGGCCACTGTAGCGGAGG 62.515 72.222 2.24 0.00 32.72 4.30
107 108 4.162690 GGCCACTGTAGCGGAGGG 62.163 72.222 0.00 0.00 0.00 4.30
108 109 4.162690 GCCACTGTAGCGGAGGGG 62.163 72.222 0.00 0.00 37.03 4.79
109 110 3.470888 CCACTGTAGCGGAGGGGG 61.471 72.222 0.00 0.00 29.28 5.40
110 111 4.162690 CACTGTAGCGGAGGGGGC 62.163 72.222 0.00 0.00 0.00 5.80
136 137 4.794439 CGACCTGCGCGACATGGA 62.794 66.667 12.10 0.00 0.00 3.41
137 138 2.887568 GACCTGCGCGACATGGAG 60.888 66.667 12.10 0.00 0.00 3.86
145 146 3.402681 CGACATGGAGCCCACCCT 61.403 66.667 0.00 0.00 35.80 4.34
146 147 2.063979 CGACATGGAGCCCACCCTA 61.064 63.158 0.00 0.00 35.80 3.53
147 148 1.410850 CGACATGGAGCCCACCCTAT 61.411 60.000 0.00 0.00 35.80 2.57
148 149 0.398318 GACATGGAGCCCACCCTATC 59.602 60.000 0.00 0.00 35.80 2.08
149 150 1.372683 CATGGAGCCCACCCTATCG 59.627 63.158 0.00 0.00 35.80 2.92
150 151 1.074471 ATGGAGCCCACCCTATCGT 60.074 57.895 0.00 0.00 35.80 3.73
151 152 1.122019 ATGGAGCCCACCCTATCGTC 61.122 60.000 0.00 0.00 35.80 4.20
152 153 1.457831 GGAGCCCACCCTATCGTCT 60.458 63.158 0.00 0.00 0.00 4.18
153 154 1.049289 GGAGCCCACCCTATCGTCTT 61.049 60.000 0.00 0.00 0.00 3.01
154 155 0.105039 GAGCCCACCCTATCGTCTTG 59.895 60.000 0.00 0.00 0.00 3.02
155 156 1.523938 GCCCACCCTATCGTCTTGC 60.524 63.158 0.00 0.00 0.00 4.01
156 157 1.904771 CCCACCCTATCGTCTTGCA 59.095 57.895 0.00 0.00 0.00 4.08
157 158 0.469917 CCCACCCTATCGTCTTGCAT 59.530 55.000 0.00 0.00 0.00 3.96
158 159 1.586422 CCACCCTATCGTCTTGCATG 58.414 55.000 0.00 0.00 0.00 4.06
159 160 0.940126 CACCCTATCGTCTTGCATGC 59.060 55.000 11.82 11.82 0.00 4.06
160 161 0.833287 ACCCTATCGTCTTGCATGCT 59.167 50.000 20.33 0.00 0.00 3.79
161 162 1.224075 CCCTATCGTCTTGCATGCTG 58.776 55.000 20.33 11.88 0.00 4.41
162 163 1.224075 CCTATCGTCTTGCATGCTGG 58.776 55.000 20.33 11.46 0.00 4.85
163 164 0.585357 CTATCGTCTTGCATGCTGGC 59.415 55.000 20.33 12.22 0.00 4.85
164 165 0.178767 TATCGTCTTGCATGCTGGCT 59.821 50.000 20.33 1.43 34.04 4.75
165 166 1.374343 ATCGTCTTGCATGCTGGCTG 61.374 55.000 20.33 6.37 34.04 4.85
166 167 2.181021 GTCTTGCATGCTGGCTGC 59.819 61.111 20.33 9.67 43.25 5.25
175 176 4.585070 GCTGGCTGCATGGGAATA 57.415 55.556 11.80 0.00 42.31 1.75
176 177 2.811307 GCTGGCTGCATGGGAATAA 58.189 52.632 11.80 0.00 42.31 1.40
177 178 0.386838 GCTGGCTGCATGGGAATAAC 59.613 55.000 11.80 0.00 42.31 1.89
178 179 2.025863 GCTGGCTGCATGGGAATAACT 61.026 52.381 11.80 0.00 42.31 2.24
179 180 2.381911 CTGGCTGCATGGGAATAACTT 58.618 47.619 0.50 0.00 0.00 2.66
180 181 2.762327 CTGGCTGCATGGGAATAACTTT 59.238 45.455 0.50 0.00 0.00 2.66
181 182 2.496871 TGGCTGCATGGGAATAACTTTG 59.503 45.455 0.50 0.00 0.00 2.77
182 183 2.760092 GGCTGCATGGGAATAACTTTGA 59.240 45.455 0.50 0.00 0.00 2.69
183 184 3.195396 GGCTGCATGGGAATAACTTTGAA 59.805 43.478 0.50 0.00 0.00 2.69
184 185 4.176271 GCTGCATGGGAATAACTTTGAAC 58.824 43.478 0.00 0.00 0.00 3.18
185 186 4.082026 GCTGCATGGGAATAACTTTGAACT 60.082 41.667 0.00 0.00 0.00 3.01
186 187 5.125417 GCTGCATGGGAATAACTTTGAACTA 59.875 40.000 0.00 0.00 0.00 2.24
187 188 6.350110 GCTGCATGGGAATAACTTTGAACTAA 60.350 38.462 0.00 0.00 0.00 2.24
188 189 7.631377 GCTGCATGGGAATAACTTTGAACTAAT 60.631 37.037 0.00 0.00 0.00 1.73
189 190 8.133024 TGCATGGGAATAACTTTGAACTAATT 57.867 30.769 0.00 0.00 0.00 1.40
190 191 8.250332 TGCATGGGAATAACTTTGAACTAATTC 58.750 33.333 0.00 0.00 35.18 2.17
191 192 7.706607 GCATGGGAATAACTTTGAACTAATTCC 59.293 37.037 0.00 0.00 40.97 3.01
192 193 8.971073 CATGGGAATAACTTTGAACTAATTCCT 58.029 33.333 10.71 0.00 41.29 3.36
193 194 8.575649 TGGGAATAACTTTGAACTAATTCCTC 57.424 34.615 10.71 3.71 41.29 3.71
194 195 8.390921 TGGGAATAACTTTGAACTAATTCCTCT 58.609 33.333 10.71 0.00 41.29 3.69
195 196 8.894731 GGGAATAACTTTGAACTAATTCCTCTC 58.105 37.037 10.71 0.00 41.29 3.20
196 197 9.674068 GGAATAACTTTGAACTAATTCCTCTCT 57.326 33.333 4.95 0.00 39.39 3.10
214 215 0.741221 CTCGGCCTTGGTGAGCTAAC 60.741 60.000 0.00 0.00 0.00 2.34
227 228 9.827411 CTTGGTGAGCTAACTAATTAACTTTTC 57.173 33.333 0.00 0.00 0.00 2.29
294 295 5.409826 CACAAGAGCGAATAGGTTCTTTCTT 59.590 40.000 0.00 0.00 35.62 2.52
326 327 0.594602 GTTTTGGGGGCACGTAAGAC 59.405 55.000 0.00 0.00 43.62 3.01
344 345 6.527023 CGTAAGACATCGAAAGAAAGAAGCTA 59.473 38.462 0.00 0.00 43.12 3.32
354 355 9.052759 TCGAAAGAAAGAAGCTAAAAGTTACAT 57.947 29.630 0.00 0.00 37.03 2.29
445 446 3.770263 AGCATCCGATGTTTTGTGATG 57.230 42.857 10.10 0.00 36.70 3.07
453 454 3.367190 CGATGTTTTGTGATGCCATCCAA 60.367 43.478 1.49 3.59 30.56 3.53
486 487 7.312415 TCAATGATAGACCATCTGATGTGAT 57.688 36.000 15.95 1.84 34.46 3.06
518 519 8.839947 TGTGCGATACATAAATTGAATTTCTG 57.160 30.769 6.40 10.10 33.42 3.02
540 546 1.815003 GCACAAGGAGGGAATCAACTG 59.185 52.381 0.00 0.00 0.00 3.16
541 547 2.815589 GCACAAGGAGGGAATCAACTGT 60.816 50.000 0.00 0.00 0.00 3.55
546 552 2.711009 AGGAGGGAATCAACTGTGAACA 59.289 45.455 0.00 0.00 37.30 3.18
562 568 6.096705 ACTGTGAACAGATTTCATGAACCAAA 59.903 34.615 17.11 0.00 46.59 3.28
584 590 4.684724 ACTGTGGTTGGATAGTTAGGAGA 58.315 43.478 0.00 0.00 0.00 3.71
603 610 2.041216 AGAACAGTGTTATCCCCAACCC 59.959 50.000 8.88 0.00 0.00 4.11
622 629 3.581332 ACCCATCAAAGTTCGAGTCCTAA 59.419 43.478 0.00 0.00 0.00 2.69
640 647 2.559998 AAACTTGACGTTGGTGCTTG 57.440 45.000 0.00 0.00 35.61 4.01
699 706 3.280295 TCGTTCAGTAGGAGGAGATGTC 58.720 50.000 0.00 0.00 0.00 3.06
722 730 2.377004 CGACTACGAGGCGTCTGTA 58.623 57.895 0.00 7.68 42.99 2.74
723 731 0.026027 CGACTACGAGGCGTCTGTAC 59.974 60.000 0.00 0.00 42.99 2.90
771 780 1.110442 CAGCTCAACCTCTCGGAGAT 58.890 55.000 8.39 0.00 33.89 2.75
782 791 0.894141 CTCGGAGATGCTCATAGGGG 59.106 60.000 0.00 0.00 33.89 4.79
792 801 0.759346 CTCATAGGGGTAGGGTGTGC 59.241 60.000 0.00 0.00 0.00 4.57
825 834 8.895845 GCATTCATAAAAATAAGTGTATGCTCG 58.104 33.333 8.06 0.00 40.19 5.03
839 848 3.258225 GCTCGTATGTGTGAGCGAT 57.742 52.632 0.00 0.00 47.00 4.58
843 852 3.550275 GCTCGTATGTGTGAGCGATTTTA 59.450 43.478 0.00 0.00 47.00 1.52
848 859 7.614908 TCGTATGTGTGAGCGATTTTAATTAC 58.385 34.615 0.00 0.00 0.00 1.89
854 865 7.385478 TGTGTGAGCGATTTTAATTACTGTGTA 59.615 33.333 0.00 0.00 0.00 2.90
906 917 3.623906 ATCATCACAGAGGACAACAGG 57.376 47.619 0.00 0.00 0.00 4.00
914 925 5.426509 TCACAGAGGACAACAGGAATGATAT 59.573 40.000 0.00 0.00 0.00 1.63
964 1023 1.091771 CACCAAGCCATCGCACTAGG 61.092 60.000 0.00 0.00 37.52 3.02
1129 1188 1.230324 GACAACCACAAGGAGAGCAC 58.770 55.000 0.00 0.00 38.69 4.40
1176 1235 1.623834 CCTCCCTACAAGCTCCCTCTT 60.624 57.143 0.00 0.00 0.00 2.85
1304 1363 2.354188 CGTTGTGTCGTCCGCTCA 60.354 61.111 0.00 0.00 0.00 4.26
1305 1364 2.645510 CGTTGTGTCGTCCGCTCAC 61.646 63.158 7.50 7.50 0.00 3.51
1325 1384 1.246056 GCAGCCATGGCAGTTCTTCA 61.246 55.000 37.18 0.00 44.88 3.02
1531 1590 8.431910 AGAGGTAATTGGTTTCTGAGTACTAA 57.568 34.615 0.00 0.00 0.00 2.24
1558 1617 8.565896 TTCTGCAATATGTCACTAAGAACAAT 57.434 30.769 0.00 0.00 0.00 2.71
1672 1808 9.877178 ATCGTCAAATATAGAGAAGAAGTTTGT 57.123 29.630 0.00 0.00 0.00 2.83
1680 1816 1.694696 AGAAGAAGTTTGTCTCCGGCT 59.305 47.619 0.00 0.00 0.00 5.52
1681 1817 1.801178 GAAGAAGTTTGTCTCCGGCTG 59.199 52.381 0.00 0.00 0.00 4.85
1685 1821 4.344865 TTTGTCTCCGGCTGGGGC 62.345 66.667 12.87 5.24 34.77 5.80
1809 2115 5.084818 TGAATGATCGACAGGTACAACAT 57.915 39.130 0.00 0.00 0.00 2.71
1811 2117 3.953712 TGATCGACAGGTACAACATGT 57.046 42.857 0.00 0.00 46.62 3.21
1878 2184 3.769844 ACCTTAGTAAGCTGCTTAGCTCA 59.230 43.478 21.62 12.17 45.54 4.26
2001 2307 1.358152 TAGGTGGGTTCAACCTGGAG 58.642 55.000 6.51 0.00 38.64 3.86
2031 2338 1.530013 CCAAGTTGGCAAGGCTGGAG 61.530 60.000 9.46 0.00 0.00 3.86
2439 2766 8.712228 AGGATATCAAGAAACAGAAAAAGGTT 57.288 30.769 4.83 0.00 0.00 3.50
2882 3221 4.753877 CGACAAGACGGCGCTCGA 62.754 66.667 22.10 0.00 42.43 4.04
3328 3669 2.103042 GGTCATGACGGAGCAGCAC 61.103 63.158 19.33 0.00 35.43 4.40
3855 4196 3.645975 CGGCGCCGTGAAACTTGT 61.646 61.111 39.71 0.00 34.35 3.16
3931 4272 1.624336 ACGGTGAGCACTTGGTACTA 58.376 50.000 0.16 0.00 0.00 1.82
4344 4685 4.821589 CGGCGAGGTCCTTGAGCC 62.822 72.222 18.69 18.69 44.00 4.70
4651 4993 1.080772 CAGCAGAACGGCGTAGTCA 60.081 57.895 15.20 0.00 39.27 3.41
4906 5248 3.469008 TGTCGAAACTTGATGACAGGT 57.531 42.857 0.00 0.00 36.50 4.00
4972 5316 3.376078 GTCTACCACCCGCCGTCA 61.376 66.667 0.00 0.00 0.00 4.35
5017 5361 2.963371 GTGTTCGACGAGGAGGCT 59.037 61.111 0.00 0.00 0.00 4.58
5086 5430 1.179814 ACACCTTCTCCGTCGAGCTT 61.180 55.000 0.00 0.00 35.94 3.74
5087 5431 0.038159 CACCTTCTCCGTCGAGCTTT 60.038 55.000 0.00 0.00 35.94 3.51
5093 5437 0.169672 CTCCGTCGAGCTTTAACCGA 59.830 55.000 0.00 0.00 0.00 4.69
5099 5443 0.462047 CGAGCTTTAACCGATGCCCT 60.462 55.000 0.00 0.00 0.00 5.19
5109 5453 2.501610 GATGCCCTCCGAGGTGAC 59.498 66.667 13.62 3.32 31.93 3.67
5243 5587 2.125350 CAAGCCCAGACCGCTCTC 60.125 66.667 0.00 0.00 34.84 3.20
5330 5674 0.319297 GTACCGCACGTTGGAGAACT 60.319 55.000 10.48 0.00 0.00 3.01
5354 5698 1.002544 GGGACACCACTGAAGAAGGAG 59.997 57.143 0.00 0.00 36.50 3.69
5371 5715 2.906389 AGGAGCAGGTGATAACAGTCAA 59.094 45.455 0.00 0.00 0.00 3.18
5449 5796 0.955752 AGGAGGGAGGATGGAGGAAT 59.044 55.000 0.00 0.00 0.00 3.01
5507 5854 2.267006 CATGGGAGCTGTGCGAGT 59.733 61.111 0.00 0.00 0.00 4.18
5770 6117 2.592993 CGGGGACTTGCAGGAGGAA 61.593 63.158 1.40 0.00 0.00 3.36
5974 6321 1.600916 GGGCGACAAACTCCTGCTT 60.601 57.895 0.00 0.00 0.00 3.91
6419 6766 0.902531 AAGGTATGTAGCAGGCACGT 59.097 50.000 0.00 0.00 0.00 4.49
6571 6918 0.952497 CAGTGAGTTGGCAGTCGCAT 60.952 55.000 13.10 0.00 41.24 4.73
6868 7215 3.733960 CTCGCCGACGTCCTCACA 61.734 66.667 10.58 0.00 41.18 3.58
7165 7531 1.327690 GGATCGTGGCACTAGGACCA 61.328 60.000 16.72 2.03 0.00 4.02
7220 7595 8.432805 AGTAGAGGAGATCAAGAAACAGAAAAA 58.567 33.333 0.00 0.00 0.00 1.94
7221 7596 7.742556 AGAGGAGATCAAGAAACAGAAAAAG 57.257 36.000 0.00 0.00 0.00 2.27
7224 7600 6.836007 AGGAGATCAAGAAACAGAAAAAGGTT 59.164 34.615 0.00 0.00 0.00 3.50
7263 7641 2.176889 CAAAACCTCCGGTCTCTCCTA 58.823 52.381 0.00 0.00 33.12 2.94
7308 7691 1.874019 CGAGCGACCCTGACAATCG 60.874 63.158 0.00 0.00 38.87 3.34
7309 7692 1.511305 GAGCGACCCTGACAATCGA 59.489 57.895 7.42 0.00 38.10 3.59
7310 7693 0.103208 GAGCGACCCTGACAATCGAT 59.897 55.000 7.42 0.00 38.10 3.59
7311 7694 0.179100 AGCGACCCTGACAATCGATG 60.179 55.000 0.00 0.00 38.10 3.84
7460 7847 7.807977 ACTGACATGTAAAATATGGTGATCC 57.192 36.000 0.00 0.00 0.00 3.36
7493 7880 2.238646 GGACATGTTCATAGGTGGGACA 59.761 50.000 0.00 0.00 0.00 4.02
7721 8108 4.147449 TCCATGGCCGACTGCGAG 62.147 66.667 6.96 0.00 42.61 5.03
7879 8266 9.488128 CATGATTCATGACTTCAAGGGAAGCAG 62.488 44.444 19.84 5.01 43.81 4.24
7975 8362 6.186957 AGATAATGTTGGCAAACCTCATGTA 58.813 36.000 0.00 0.00 35.25 2.29
8002 8389 0.543749 AACTGGGATCTACCTGCAGC 59.456 55.000 8.66 0.00 38.98 5.25
8411 8815 1.676967 CTCCAAGTTCCCAGCAGCC 60.677 63.158 0.00 0.00 0.00 4.85
8736 9149 5.843673 TTGTCAGGATTTGTGCTGTTTTA 57.156 34.783 0.00 0.00 0.00 1.52
8813 9226 3.926058 AACCCGTTACTCATTGCCTAT 57.074 42.857 0.00 0.00 0.00 2.57
8947 9360 9.690913 ACACAAGTACTATACAATAGGAGTACA 57.309 33.333 12.21 0.00 44.37 2.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.877508 CGACCTCACAACTTTTTCTTCCT 59.122 43.478 0.00 0.00 0.00 3.36
1 2 3.875134 TCGACCTCACAACTTTTTCTTCC 59.125 43.478 0.00 0.00 0.00 3.46
2 3 5.467063 AGATCGACCTCACAACTTTTTCTTC 59.533 40.000 0.00 0.00 0.00 2.87
3 4 5.368989 AGATCGACCTCACAACTTTTTCTT 58.631 37.500 0.00 0.00 0.00 2.52
4 5 4.962155 AGATCGACCTCACAACTTTTTCT 58.038 39.130 0.00 0.00 0.00 2.52
5 6 5.348997 CCTAGATCGACCTCACAACTTTTTC 59.651 44.000 0.00 0.00 0.00 2.29
6 7 5.011738 TCCTAGATCGACCTCACAACTTTTT 59.988 40.000 0.00 0.00 0.00 1.94
7 8 4.527038 TCCTAGATCGACCTCACAACTTTT 59.473 41.667 0.00 0.00 0.00 2.27
8 9 4.087182 TCCTAGATCGACCTCACAACTTT 58.913 43.478 0.00 0.00 0.00 2.66
9 10 3.698289 TCCTAGATCGACCTCACAACTT 58.302 45.455 0.00 0.00 0.00 2.66
10 11 3.367646 TCCTAGATCGACCTCACAACT 57.632 47.619 0.00 0.00 0.00 3.16
11 12 3.695060 TCTTCCTAGATCGACCTCACAAC 59.305 47.826 0.00 0.00 0.00 3.32
12 13 3.948473 CTCTTCCTAGATCGACCTCACAA 59.052 47.826 0.00 0.00 0.00 3.33
13 14 3.200165 TCTCTTCCTAGATCGACCTCACA 59.800 47.826 0.00 0.00 0.00 3.58
14 15 3.811083 TCTCTTCCTAGATCGACCTCAC 58.189 50.000 0.00 0.00 0.00 3.51
15 16 3.712218 TCTCTCTTCCTAGATCGACCTCA 59.288 47.826 0.00 0.00 0.00 3.86
16 17 4.315803 CTCTCTCTTCCTAGATCGACCTC 58.684 52.174 0.00 0.00 0.00 3.85
17 18 3.496160 GCTCTCTCTTCCTAGATCGACCT 60.496 52.174 0.00 0.00 0.00 3.85
18 19 2.812011 GCTCTCTCTTCCTAGATCGACC 59.188 54.545 0.00 0.00 0.00 4.79
19 20 2.812011 GGCTCTCTCTTCCTAGATCGAC 59.188 54.545 0.00 0.00 0.00 4.20
20 21 2.439880 TGGCTCTCTCTTCCTAGATCGA 59.560 50.000 0.00 0.00 0.00 3.59
21 22 2.813754 CTGGCTCTCTCTTCCTAGATCG 59.186 54.545 0.00 0.00 0.00 3.69
22 23 3.157087 CCTGGCTCTCTCTTCCTAGATC 58.843 54.545 0.00 0.00 0.00 2.75
23 24 2.788807 TCCTGGCTCTCTCTTCCTAGAT 59.211 50.000 0.00 0.00 0.00 1.98
24 25 2.092103 GTCCTGGCTCTCTCTTCCTAGA 60.092 54.545 0.00 0.00 0.00 2.43
25 26 2.306847 GTCCTGGCTCTCTCTTCCTAG 58.693 57.143 0.00 0.00 0.00 3.02
26 27 1.408961 CGTCCTGGCTCTCTCTTCCTA 60.409 57.143 0.00 0.00 0.00 2.94
27 28 0.682855 CGTCCTGGCTCTCTCTTCCT 60.683 60.000 0.00 0.00 0.00 3.36
28 29 1.813192 CGTCCTGGCTCTCTCTTCC 59.187 63.158 0.00 0.00 0.00 3.46
29 30 1.140804 GCGTCCTGGCTCTCTCTTC 59.859 63.158 0.00 0.00 0.00 2.87
30 31 2.355193 GGCGTCCTGGCTCTCTCTT 61.355 63.158 0.00 0.00 40.72 2.85
31 32 2.757917 GGCGTCCTGGCTCTCTCT 60.758 66.667 0.00 0.00 40.72 3.10
32 33 1.965754 ATTGGCGTCCTGGCTCTCTC 61.966 60.000 0.00 0.00 45.14 3.20
33 34 1.965754 GATTGGCGTCCTGGCTCTCT 61.966 60.000 0.00 0.00 45.14 3.10
34 35 1.522580 GATTGGCGTCCTGGCTCTC 60.523 63.158 0.00 0.00 45.14 3.20
35 36 2.249413 CTGATTGGCGTCCTGGCTCT 62.249 60.000 0.00 0.00 45.14 4.09
36 37 1.817099 CTGATTGGCGTCCTGGCTC 60.817 63.158 0.00 0.00 45.14 4.70
37 38 1.630126 ATCTGATTGGCGTCCTGGCT 61.630 55.000 0.00 0.00 45.14 4.75
38 39 1.153086 ATCTGATTGGCGTCCTGGC 60.153 57.895 0.00 0.00 45.12 4.85
39 40 0.467384 AGATCTGATTGGCGTCCTGG 59.533 55.000 0.00 0.00 0.00 4.45
40 41 1.579698 CAGATCTGATTGGCGTCCTG 58.420 55.000 18.34 0.00 0.00 3.86
41 42 0.179062 GCAGATCTGATTGGCGTCCT 60.179 55.000 27.04 0.00 0.00 3.85
42 43 1.162800 GGCAGATCTGATTGGCGTCC 61.163 60.000 27.04 11.17 0.00 4.79
43 44 2.315246 GGCAGATCTGATTGGCGTC 58.685 57.895 27.04 5.55 0.00 5.19
44 45 4.547859 GGCAGATCTGATTGGCGT 57.452 55.556 27.04 0.00 0.00 5.68
46 47 1.493950 CGACGGCAGATCTGATTGGC 61.494 60.000 27.04 15.06 36.60 4.52
47 48 0.103026 TCGACGGCAGATCTGATTGG 59.897 55.000 27.04 13.09 0.00 3.16
48 49 1.485397 CTCGACGGCAGATCTGATTG 58.515 55.000 27.04 16.03 0.00 2.67
49 50 0.387202 CCTCGACGGCAGATCTGATT 59.613 55.000 27.04 8.86 0.00 2.57
50 51 0.466372 TCCTCGACGGCAGATCTGAT 60.466 55.000 27.04 10.52 0.00 2.90
51 52 0.679960 TTCCTCGACGGCAGATCTGA 60.680 55.000 27.04 3.01 0.00 3.27
52 53 0.526524 GTTCCTCGACGGCAGATCTG 60.527 60.000 18.84 18.84 0.00 2.90
53 54 1.810532 GTTCCTCGACGGCAGATCT 59.189 57.895 0.00 0.00 0.00 2.75
54 55 1.586564 CGTTCCTCGACGGCAGATC 60.587 63.158 0.00 0.00 42.86 2.75
55 56 2.490217 CGTTCCTCGACGGCAGAT 59.510 61.111 0.00 0.00 42.86 2.90
56 57 4.415332 GCGTTCCTCGACGGCAGA 62.415 66.667 0.00 0.00 42.98 4.26
62 63 2.482296 TTTCCTCGGCGTTCCTCGAC 62.482 60.000 6.85 0.00 45.27 4.20
63 64 1.808531 TTTTCCTCGGCGTTCCTCGA 61.809 55.000 6.85 0.00 42.86 4.04
64 65 1.373748 TTTTCCTCGGCGTTCCTCG 60.374 57.895 6.85 0.00 43.12 4.63
65 66 1.623973 CGTTTTCCTCGGCGTTCCTC 61.624 60.000 6.85 0.00 0.00 3.71
66 67 1.666872 CGTTTTCCTCGGCGTTCCT 60.667 57.895 6.85 0.00 0.00 3.36
67 68 1.665599 TCGTTTTCCTCGGCGTTCC 60.666 57.895 6.85 0.00 0.00 3.62
68 69 1.490258 GTCGTTTTCCTCGGCGTTC 59.510 57.895 6.85 0.00 0.00 3.95
69 70 3.633951 GTCGTTTTCCTCGGCGTT 58.366 55.556 6.85 0.00 0.00 4.84
72 73 3.785499 GGCGTCGTTTTCCTCGGC 61.785 66.667 0.00 0.00 41.00 5.54
73 74 3.475774 CGGCGTCGTTTTCCTCGG 61.476 66.667 0.00 0.00 0.00 4.63
74 75 3.475774 CCGGCGTCGTTTTCCTCG 61.476 66.667 9.28 0.00 33.95 4.63
75 76 3.785499 GCCGGCGTCGTTTTCCTC 61.785 66.667 12.58 0.00 33.95 3.71
78 79 4.379143 GTGGCCGGCGTCGTTTTC 62.379 66.667 22.54 3.93 33.95 2.29
79 80 4.922026 AGTGGCCGGCGTCGTTTT 62.922 61.111 22.54 0.00 33.95 2.43
88 89 4.514577 CTCCGCTACAGTGGCCGG 62.515 72.222 2.85 8.22 45.04 6.13
89 90 4.514577 CCTCCGCTACAGTGGCCG 62.515 72.222 2.85 0.00 45.04 6.13
90 91 4.162690 CCCTCCGCTACAGTGGCC 62.163 72.222 2.85 0.00 45.04 5.36
91 92 4.162690 CCCCTCCGCTACAGTGGC 62.163 72.222 3.84 0.00 45.04 5.01
92 93 3.470888 CCCCCTCCGCTACAGTGG 61.471 72.222 2.22 2.22 46.72 4.00
93 94 4.162690 GCCCCCTCCGCTACAGTG 62.163 72.222 0.00 0.00 0.00 3.66
119 120 4.794439 TCCATGTCGCGCAGGTCG 62.794 66.667 8.75 0.00 42.12 4.79
120 121 2.887568 CTCCATGTCGCGCAGGTC 60.888 66.667 8.75 0.00 0.00 3.85
128 129 1.410850 ATAGGGTGGGCTCCATGTCG 61.411 60.000 0.00 0.00 35.28 4.35
129 130 0.398318 GATAGGGTGGGCTCCATGTC 59.602 60.000 0.00 0.00 35.28 3.06
130 131 1.410850 CGATAGGGTGGGCTCCATGT 61.411 60.000 0.00 0.00 35.28 3.21
131 132 1.372683 CGATAGGGTGGGCTCCATG 59.627 63.158 0.00 0.00 35.28 3.66
132 133 1.074471 ACGATAGGGTGGGCTCCAT 60.074 57.895 0.00 0.00 43.77 3.41
133 134 1.760875 GACGATAGGGTGGGCTCCA 60.761 63.158 0.00 0.00 43.77 3.86
134 135 1.049289 AAGACGATAGGGTGGGCTCC 61.049 60.000 0.00 0.00 43.77 4.70
135 136 0.105039 CAAGACGATAGGGTGGGCTC 59.895 60.000 0.00 0.00 43.77 4.70
136 137 1.972660 GCAAGACGATAGGGTGGGCT 61.973 60.000 0.00 0.00 43.77 5.19
137 138 1.523938 GCAAGACGATAGGGTGGGC 60.524 63.158 0.00 0.00 43.77 5.36
138 139 0.469917 ATGCAAGACGATAGGGTGGG 59.530 55.000 0.00 0.00 43.77 4.61
139 140 1.586422 CATGCAAGACGATAGGGTGG 58.414 55.000 0.00 0.00 43.77 4.61
140 141 0.940126 GCATGCAAGACGATAGGGTG 59.060 55.000 14.21 0.00 43.77 4.61
141 142 0.833287 AGCATGCAAGACGATAGGGT 59.167 50.000 21.98 0.00 43.77 4.34
142 143 1.224075 CAGCATGCAAGACGATAGGG 58.776 55.000 21.98 0.00 43.77 3.53
143 144 1.224075 CCAGCATGCAAGACGATAGG 58.776 55.000 21.98 3.34 35.17 2.57
144 145 0.585357 GCCAGCATGCAAGACGATAG 59.415 55.000 21.98 0.00 36.97 2.08
145 146 0.178767 AGCCAGCATGCAAGACGATA 59.821 50.000 21.98 0.00 31.97 2.92
146 147 1.077930 AGCCAGCATGCAAGACGAT 60.078 52.632 21.98 0.00 31.97 3.73
147 148 2.036571 CAGCCAGCATGCAAGACGA 61.037 57.895 21.98 0.00 31.97 4.20
148 149 2.483745 CAGCCAGCATGCAAGACG 59.516 61.111 21.98 0.85 31.97 4.18
149 150 2.181021 GCAGCCAGCATGCAAGAC 59.819 61.111 21.98 4.25 43.31 3.01
158 159 0.386838 GTTATTCCCATGCAGCCAGC 59.613 55.000 0.00 0.00 45.96 4.85
159 160 2.062971 AGTTATTCCCATGCAGCCAG 57.937 50.000 0.00 0.00 0.00 4.85
160 161 2.496871 CAAAGTTATTCCCATGCAGCCA 59.503 45.455 0.00 0.00 0.00 4.75
161 162 2.760092 TCAAAGTTATTCCCATGCAGCC 59.240 45.455 0.00 0.00 0.00 4.85
162 163 4.082026 AGTTCAAAGTTATTCCCATGCAGC 60.082 41.667 0.00 0.00 0.00 5.25
163 164 5.649782 AGTTCAAAGTTATTCCCATGCAG 57.350 39.130 0.00 0.00 0.00 4.41
164 165 7.716799 ATTAGTTCAAAGTTATTCCCATGCA 57.283 32.000 0.00 0.00 0.00 3.96
165 166 7.706607 GGAATTAGTTCAAAGTTATTCCCATGC 59.293 37.037 13.67 0.00 39.71 4.06
166 167 8.971073 AGGAATTAGTTCAAAGTTATTCCCATG 58.029 33.333 18.16 0.00 43.52 3.66
167 168 9.190317 GAGGAATTAGTTCAAAGTTATTCCCAT 57.810 33.333 18.16 7.05 43.52 4.00
168 169 8.390921 AGAGGAATTAGTTCAAAGTTATTCCCA 58.609 33.333 18.16 0.00 43.52 4.37
169 170 8.809468 AGAGGAATTAGTTCAAAGTTATTCCC 57.191 34.615 18.16 12.63 43.52 3.97
170 171 9.674068 AGAGAGGAATTAGTTCAAAGTTATTCC 57.326 33.333 15.66 15.66 43.13 3.01
172 173 9.372369 CGAGAGAGGAATTAGTTCAAAGTTATT 57.628 33.333 0.03 0.00 36.01 1.40
173 174 7.982354 CCGAGAGAGGAATTAGTTCAAAGTTAT 59.018 37.037 0.03 0.00 36.01 1.89
174 175 7.321153 CCGAGAGAGGAATTAGTTCAAAGTTA 58.679 38.462 0.03 0.00 36.01 2.24
175 176 6.166982 CCGAGAGAGGAATTAGTTCAAAGTT 58.833 40.000 0.03 0.00 36.01 2.66
176 177 5.725362 CCGAGAGAGGAATTAGTTCAAAGT 58.275 41.667 0.03 0.00 36.01 2.66
177 178 4.568760 GCCGAGAGAGGAATTAGTTCAAAG 59.431 45.833 0.03 0.00 36.01 2.77
178 179 4.504858 GCCGAGAGAGGAATTAGTTCAAA 58.495 43.478 0.03 0.00 36.01 2.69
179 180 3.118738 GGCCGAGAGAGGAATTAGTTCAA 60.119 47.826 0.03 0.00 36.01 2.69
180 181 2.431057 GGCCGAGAGAGGAATTAGTTCA 59.569 50.000 0.03 0.00 36.01 3.18
181 182 2.696187 AGGCCGAGAGAGGAATTAGTTC 59.304 50.000 0.00 0.00 0.00 3.01
182 183 2.753247 AGGCCGAGAGAGGAATTAGTT 58.247 47.619 0.00 0.00 0.00 2.24
183 184 2.432510 CAAGGCCGAGAGAGGAATTAGT 59.567 50.000 0.00 0.00 0.00 2.24
184 185 2.224161 CCAAGGCCGAGAGAGGAATTAG 60.224 54.545 0.00 0.00 0.00 1.73
185 186 1.762957 CCAAGGCCGAGAGAGGAATTA 59.237 52.381 0.00 0.00 0.00 1.40
186 187 0.543749 CCAAGGCCGAGAGAGGAATT 59.456 55.000 0.00 0.00 0.00 2.17
187 188 0.618968 ACCAAGGCCGAGAGAGGAAT 60.619 55.000 0.00 0.00 0.00 3.01
188 189 1.229209 ACCAAGGCCGAGAGAGGAA 60.229 57.895 0.00 0.00 0.00 3.36
189 190 1.984570 CACCAAGGCCGAGAGAGGA 60.985 63.158 0.00 0.00 0.00 3.71
190 191 1.954362 CTCACCAAGGCCGAGAGAGG 61.954 65.000 0.00 0.00 0.00 3.69
191 192 1.515020 CTCACCAAGGCCGAGAGAG 59.485 63.158 0.00 0.00 0.00 3.20
192 193 2.650116 GCTCACCAAGGCCGAGAGA 61.650 63.158 8.61 0.00 0.00 3.10
193 194 1.323271 TAGCTCACCAAGGCCGAGAG 61.323 60.000 8.61 8.33 0.00 3.20
194 195 0.902984 TTAGCTCACCAAGGCCGAGA 60.903 55.000 8.61 0.00 0.00 4.04
195 196 0.741221 GTTAGCTCACCAAGGCCGAG 60.741 60.000 0.00 0.00 0.00 4.63
196 197 1.192146 AGTTAGCTCACCAAGGCCGA 61.192 55.000 0.00 0.00 0.00 5.54
214 215 7.692705 GCTACCGCTCAAAGAAAAGTTAATTAG 59.307 37.037 0.00 0.00 0.00 1.73
227 228 8.589335 TCTAATTAATTAGCTACCGCTCAAAG 57.411 34.615 24.59 4.83 45.15 2.77
252 253 2.158534 TGTGCACCTTTGTCCCTACAAT 60.159 45.455 15.69 0.00 44.85 2.71
294 295 3.181450 CCCCCAAAACAAATAAAGCCACA 60.181 43.478 0.00 0.00 0.00 4.17
326 327 9.319223 GTAACTTTTAGCTTCTTTCTTTCGATG 57.681 33.333 0.00 0.00 0.00 3.84
373 374 9.796180 TTTACAAGATAACCTAGCCTGTAAAAA 57.204 29.630 4.29 0.00 0.00 1.94
374 375 9.223099 GTTTACAAGATAACCTAGCCTGTAAAA 57.777 33.333 7.20 0.00 33.13 1.52
392 393 6.209391 ACATGGGGAGAAATCAAGTTTACAAG 59.791 38.462 0.00 0.00 0.00 3.16
445 446 3.530265 TTGATTGAATGCTTGGATGGC 57.470 42.857 0.00 0.00 0.00 4.40
453 454 7.175119 CAGATGGTCTATCATTGATTGAATGCT 59.825 37.037 11.54 5.64 41.29 3.79
518 519 1.541588 GTTGATTCCCTCCTTGTGCAC 59.458 52.381 10.75 10.75 0.00 4.57
540 546 6.418819 CAGTTTGGTTCATGAAATCTGTTCAC 59.581 38.462 10.35 0.00 0.00 3.18
541 547 6.096705 ACAGTTTGGTTCATGAAATCTGTTCA 59.903 34.615 10.35 0.00 31.02 3.18
546 552 5.458041 CCACAGTTTGGTTCATGAAATCT 57.542 39.130 10.35 1.92 41.10 2.40
562 568 4.684724 TCTCCTAACTATCCAACCACAGT 58.315 43.478 0.00 0.00 0.00 3.55
575 581 4.470304 GGGGATAACACTGTTCTCCTAACT 59.530 45.833 20.24 0.00 0.00 2.24
584 590 1.783979 TGGGTTGGGGATAACACTGTT 59.216 47.619 0.00 0.00 35.04 3.16
603 610 6.423905 TCAAGTTTAGGACTCGAACTTTGATG 59.576 38.462 9.62 3.13 40.54 3.07
622 629 0.100503 GCAAGCACCAACGTCAAGTT 59.899 50.000 0.00 0.00 45.45 2.66
722 730 5.449862 GCATCTTGAGATAGACGAAGTCAGT 60.450 44.000 2.90 0.00 46.85 3.41
723 731 4.975502 GCATCTTGAGATAGACGAAGTCAG 59.024 45.833 2.90 0.00 46.85 3.51
771 780 0.341961 ACACCCTACCCCTATGAGCA 59.658 55.000 0.00 0.00 0.00 4.26
782 791 3.411351 CACGCACGCACACCCTAC 61.411 66.667 0.00 0.00 0.00 3.18
792 801 5.511377 ACTTATTTTTATGAATGCACGCACG 59.489 36.000 0.00 0.00 0.00 5.34
796 805 8.471457 GCATACACTTATTTTTATGAATGCACG 58.529 33.333 0.00 0.00 36.79 5.34
825 834 8.388103 ACAGTAATTAAAATCGCTCACACATAC 58.612 33.333 0.00 0.00 0.00 2.39
827 836 7.094805 ACACAGTAATTAAAATCGCTCACACAT 60.095 33.333 0.00 0.00 0.00 3.21
829 838 6.599437 ACACAGTAATTAAAATCGCTCACAC 58.401 36.000 0.00 0.00 0.00 3.82
858 869 3.093814 AGTGGAAACGGTTTGGAGTTTT 58.906 40.909 11.43 0.00 40.24 2.43
864 875 3.396260 TCTCTAGTGGAAACGGTTTGG 57.604 47.619 11.43 0.00 0.00 3.28
914 925 7.941431 TTTCCTCGTAATTTATAGCCCAAAA 57.059 32.000 0.00 0.00 0.00 2.44
1129 1188 0.319383 AGTCTGTCGAGCAGCTTGTG 60.319 55.000 9.65 2.21 44.66 3.33
1176 1235 1.760875 GAGGTGGAGGTGGCCGATA 60.761 63.158 0.00 0.00 0.00 2.92
1304 1363 3.058160 GAACTGCCATGGCTGCGT 61.058 61.111 35.67 26.39 42.60 5.24
1305 1364 2.262471 GAAGAACTGCCATGGCTGCG 62.262 60.000 35.67 25.70 42.60 5.18
1325 1384 2.108157 ACACATGGTCGTGCGTGT 59.892 55.556 0.00 0.00 40.73 4.49
1374 1433 4.777366 TCAGTTGACCCATAGAAGATGACA 59.223 41.667 0.00 0.00 0.00 3.58
1378 1437 6.521427 GCCATATCAGTTGACCCATAGAAGAT 60.521 42.308 0.00 0.00 0.00 2.40
1531 1590 8.565896 TGTTCTTAGTGACATATTGCAGAAAT 57.434 30.769 0.00 0.00 0.00 2.17
1672 1808 2.679619 ATATCAGCCCCAGCCGGAGA 62.680 60.000 5.05 0.00 41.25 3.71
1680 1816 2.065007 AGCCACAATATATCAGCCCCA 58.935 47.619 0.00 0.00 0.00 4.96
1681 1817 2.887151 AGCCACAATATATCAGCCCC 57.113 50.000 0.00 0.00 0.00 5.80
1878 2184 4.771577 TGGCAAACAATATCAGTGGTGAAT 59.228 37.500 0.00 0.00 35.88 2.57
2031 2338 1.065418 CACACCATCCTCCTTACCACC 60.065 57.143 0.00 0.00 0.00 4.61
2431 2758 5.183522 TCACGTTCAACCTTGTAACCTTTTT 59.816 36.000 0.00 0.00 0.00 1.94
2439 2766 1.210870 GCGTCACGTTCAACCTTGTA 58.789 50.000 0.00 0.00 0.00 2.41
2882 3221 4.675029 CGGCCCGGAACAGAACGT 62.675 66.667 0.73 0.00 0.00 3.99
3022 3361 0.171455 GTGATCTGCTCGAACTCCGT 59.829 55.000 0.00 0.00 39.75 4.69
3197 3538 0.318762 GTCAGGTCAAGGAGCGTCTT 59.681 55.000 0.00 0.00 35.00 3.01
3311 3652 1.079543 AGTGCTGCTCCGTCATGAC 60.080 57.895 16.21 16.21 0.00 3.06
3489 3830 3.049674 CGTTGCCGGTGCTGTCAT 61.050 61.111 1.90 0.00 38.71 3.06
3745 4086 4.135153 CAGGCTAGGTCGCAGCGT 62.135 66.667 15.93 0.00 40.05 5.07
4344 4685 3.118454 AAAGATCCGCGTGCACCG 61.118 61.111 12.15 15.37 40.40 4.94
4442 4783 2.202623 GGTCGCGAGCAGGTACAG 60.203 66.667 31.60 0.00 0.00 2.74
4651 4993 4.699522 GGTCTGGTTCCGGCGCTT 62.700 66.667 7.64 0.00 0.00 4.68
4876 5218 2.680841 CAAGTTTCGACAGGTTTGGACA 59.319 45.455 0.00 0.00 0.00 4.02
4906 5248 0.180171 CGAGGAATACCATGGGTGCA 59.820 55.000 18.09 0.00 36.19 4.57
4972 5316 2.430367 GAGGCCAGGACACGGTTT 59.570 61.111 5.01 0.00 0.00 3.27
5017 5361 2.523168 TGAGACCAGTCCCACGCA 60.523 61.111 0.00 0.00 0.00 5.24
5086 5430 1.682451 CCTCGGAGGGCATCGGTTAA 61.682 60.000 16.59 0.00 0.00 2.01
5087 5431 2.131709 CCTCGGAGGGCATCGGTTA 61.132 63.158 16.59 0.00 0.00 2.85
5093 5437 3.083997 GGTCACCTCGGAGGGCAT 61.084 66.667 26.94 4.34 40.58 4.40
5243 5587 2.363807 GAGACACGAACTCCATGCG 58.636 57.895 0.00 0.00 0.00 4.73
5354 5698 5.178797 ACTGTATTGACTGTTATCACCTGC 58.821 41.667 0.00 0.00 34.33 4.85
5449 5796 0.462581 GCATCTCCTCGTTCATGGCA 60.463 55.000 0.00 0.00 0.00 4.92
5480 5827 0.603707 AGCTCCCATGTGTCGTTGTG 60.604 55.000 0.00 0.00 0.00 3.33
5770 6117 1.500844 CGGCTGAACGACGTAGACT 59.499 57.895 0.00 0.00 40.01 3.24
5805 6152 3.075005 CCTTCCCTTCCTCGCCGA 61.075 66.667 0.00 0.00 0.00 5.54
5974 6321 3.729804 TCGACGTACACACCGACA 58.270 55.556 0.00 0.00 0.00 4.35
6077 6424 3.292460 CCAGGTAGTAGCTGAGCTTACT 58.708 50.000 27.08 15.81 45.98 2.24
6080 6427 1.490574 CCCAGGTAGTAGCTGAGCTT 58.509 55.000 27.08 0.00 45.98 3.74
6419 6766 1.001181 GTAGGCACAACCGTAGTCCAA 59.999 52.381 0.00 0.00 46.52 3.53
6571 6918 1.602323 CGCCACCACCCTTTGCTTA 60.602 57.895 0.00 0.00 0.00 3.09
6637 6984 0.323725 GAGCCAGCCAAATCCCTTGA 60.324 55.000 0.00 0.00 37.17 3.02
6868 7215 0.387929 TGAGTCGTCCGAGTGCTTTT 59.612 50.000 1.08 0.00 0.00 2.27
7137 7503 1.737793 GTGCCACGATCCCTAAAACTG 59.262 52.381 0.00 0.00 0.00 3.16
7165 7531 4.141482 TGTTACAAAGAGAAAGAGTGGCCT 60.141 41.667 3.32 0.00 0.00 5.19
7220 7595 3.200483 GTCACGTTCAACCTTGTAACCT 58.800 45.455 0.00 0.00 0.00 3.50
7221 7596 2.033492 CGTCACGTTCAACCTTGTAACC 60.033 50.000 0.00 0.00 0.00 2.85
7224 7600 1.210870 GCGTCACGTTCAACCTTGTA 58.789 50.000 0.00 0.00 0.00 2.41
7263 7641 3.990092 TCACAACTCGCTAAACACAGAT 58.010 40.909 0.00 0.00 0.00 2.90
7308 7691 5.565592 TGTTGAATGGATAGCAACACATC 57.434 39.130 0.00 0.00 44.73 3.06
7450 7837 4.504864 CCTGCGAAAATAGGGATCACCATA 60.505 45.833 0.00 0.00 43.89 2.74
7460 7847 3.689161 TGAACATGTCCTGCGAAAATAGG 59.311 43.478 0.00 0.00 35.34 2.57
7493 7880 6.053632 TCCAACACTATGAATGATGTGTCT 57.946 37.500 0.00 0.00 41.97 3.41
7624 8011 2.374504 CCCTTCAGGTAGATCATGCCAT 59.625 50.000 0.00 0.00 35.79 4.40
7688 8075 2.003548 GGAGAGGTGGGGCAGGAAT 61.004 63.158 0.00 0.00 0.00 3.01
7721 8108 6.097554 CAGATGGTATGGTGTATCCCTCTATC 59.902 46.154 0.00 0.00 34.77 2.08
7879 8266 6.710295 AGTCCCAAAAGGCAAATAATGAAAAC 59.290 34.615 0.00 0.00 34.51 2.43
7975 8362 2.572104 GGTAGATCCCAGTTGAAGTGGT 59.428 50.000 17.24 0.00 36.97 4.16
8219 8622 7.954666 ACCCATATGTTAATGCTTACAACTT 57.045 32.000 1.24 0.00 0.00 2.66
8220 8623 7.954666 AACCCATATGTTAATGCTTACAACT 57.045 32.000 1.24 0.00 0.00 3.16
8411 8815 8.967218 CACACAAATAATGTAAAACAACTCAGG 58.033 33.333 0.00 0.00 41.46 3.86
8704 9116 6.647895 GCACAAATCCTGACAAAAGAATCAAT 59.352 34.615 0.00 0.00 0.00 2.57
8716 9128 5.863935 GGAATAAAACAGCACAAATCCTGAC 59.136 40.000 0.00 0.00 33.40 3.51
8720 9133 7.226523 ACAAAAGGAATAAAACAGCACAAATCC 59.773 33.333 0.00 0.00 0.00 3.01
8736 9149 5.072193 AGCCCTGAAAATTGACAAAAGGAAT 59.928 36.000 0.00 0.00 0.00 3.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.