Multiple sequence alignment - TraesCS6D01G024300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G024300 chr6D 100.000 2865 0 0 1 2865 9215180 9218044 0.000000e+00 5291.0
1 TraesCS6D01G024300 chr6D 79.635 1861 308 48 621 2453 9027224 9029041 0.000000e+00 1271.0
2 TraesCS6D01G024300 chr6D 91.457 398 33 1 2467 2864 22119593 22119989 1.940000e-151 545.0
3 TraesCS6D01G024300 chr6D 76.667 1050 195 30 662 1691 9114149 9115168 1.170000e-148 536.0
4 TraesCS6D01G024300 chr6D 90.955 398 36 0 2467 2864 364096548 364096151 1.170000e-148 536.0
5 TraesCS6D01G024300 chr6D 92.017 238 17 2 336 571 200415927 200415690 1.650000e-87 333.0
6 TraesCS6D01G024300 chr6A 92.944 2296 141 11 575 2864 11281292 11279012 0.000000e+00 3323.0
7 TraesCS6D01G024300 chr6A 78.627 1034 189 21 664 1676 9946680 9947702 0.000000e+00 656.0
8 TraesCS6D01G024300 chr6A 78.011 1046 198 19 664 1688 9855971 9857005 1.870000e-176 628.0
9 TraesCS6D01G024300 chr6B 92.411 1779 114 13 572 2345 17205092 17206854 0.000000e+00 2518.0
10 TraesCS6D01G024300 chr6B 79.677 1855 314 46 621 2453 16547450 16545637 0.000000e+00 1279.0
11 TraesCS6D01G024300 chr6B 91.825 526 38 4 2339 2864 17217120 17217640 0.000000e+00 728.0
12 TraesCS6D01G024300 chr6B 79.179 1047 190 17 664 1691 16995927 16996964 0.000000e+00 701.0
13 TraesCS6D01G024300 chr6B 90.684 526 43 5 2339 2864 17220797 17221316 0.000000e+00 695.0
14 TraesCS6D01G024300 chr6B 76.594 1051 191 34 662 1691 16628284 16629300 7.030000e-146 527.0
15 TraesCS6D01G024300 chr2B 91.750 400 28 2 2467 2865 389479304 389478909 4.170000e-153 551.0
16 TraesCS6D01G024300 chr2B 87.246 345 25 12 1 334 142904042 142904378 2.690000e-100 375.0
17 TraesCS6D01G024300 chr7B 91.045 402 32 2 2463 2864 409729896 409729499 9.030000e-150 540.0
18 TraesCS6D01G024300 chr7B 87.320 347 32 8 1 335 646063349 646063003 1.250000e-103 387.0
19 TraesCS6D01G024300 chr7B 86.257 342 32 14 1 336 664221455 664221787 9.760000e-95 357.0
20 TraesCS6D01G024300 chr4B 91.206 398 34 1 2467 2864 18409791 18409395 9.030000e-150 540.0
21 TraesCS6D01G024300 chr3D 90.977 399 36 0 2466 2864 197876113 197876511 3.250000e-149 538.0
22 TraesCS6D01G024300 chr3D 91.416 233 18 2 341 571 124476844 124476612 4.610000e-83 318.0
23 TraesCS6D01G024300 chr3A 90.000 340 19 9 6 335 44314374 44314708 2.640000e-115 425.0
24 TraesCS6D01G024300 chr3A 91.213 239 19 2 336 572 343152602 343152840 9.900000e-85 324.0
25 TraesCS6D01G024300 chr4D 87.798 336 28 7 14 340 397176608 397176939 5.790000e-102 381.0
26 TraesCS6D01G024300 chr4D 86.930 329 31 9 15 335 70500584 70500260 2.710000e-95 359.0
27 TraesCS6D01G024300 chr3B 87.574 338 26 11 1 330 102223989 102224318 7.490000e-101 377.0
28 TraesCS6D01G024300 chr3B 91.701 241 17 2 336 573 627606316 627606556 5.920000e-87 331.0
29 TraesCS6D01G024300 chr3B 96.774 31 1 0 578 608 547605102 547605072 5.000000e-03 52.8
30 TraesCS6D01G024300 chr5D 87.692 325 26 9 21 335 127262891 127263211 1.620000e-97 366.0
31 TraesCS6D01G024300 chr5D 87.908 306 28 9 35 335 237837647 237837948 4.540000e-93 351.0
32 TraesCS6D01G024300 chr5D 92.340 235 15 2 340 571 365586833 365587067 5.920000e-87 331.0
33 TraesCS6D01G024300 chr5D 90.438 251 21 2 324 571 215135067 215135317 7.650000e-86 327.0
34 TraesCS6D01G024300 chr5B 90.234 256 21 4 323 575 570658870 570658616 5.920000e-87 331.0
35 TraesCS6D01G024300 chr1D 91.597 238 18 2 336 571 257243733 257243970 7.650000e-86 327.0
36 TraesCS6D01G024300 chr1D 91.597 238 18 2 336 571 284372255 284372492 7.650000e-86 327.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G024300 chr6D 9215180 9218044 2864 False 5291.0 5291 100.0000 1 2865 1 chr6D.!!$F3 2864
1 TraesCS6D01G024300 chr6D 9027224 9029041 1817 False 1271.0 1271 79.6350 621 2453 1 chr6D.!!$F1 1832
2 TraesCS6D01G024300 chr6D 9114149 9115168 1019 False 536.0 536 76.6670 662 1691 1 chr6D.!!$F2 1029
3 TraesCS6D01G024300 chr6A 11279012 11281292 2280 True 3323.0 3323 92.9440 575 2864 1 chr6A.!!$R1 2289
4 TraesCS6D01G024300 chr6A 9946680 9947702 1022 False 656.0 656 78.6270 664 1676 1 chr6A.!!$F2 1012
5 TraesCS6D01G024300 chr6A 9855971 9857005 1034 False 628.0 628 78.0110 664 1688 1 chr6A.!!$F1 1024
6 TraesCS6D01G024300 chr6B 17205092 17206854 1762 False 2518.0 2518 92.4110 572 2345 1 chr6B.!!$F3 1773
7 TraesCS6D01G024300 chr6B 16545637 16547450 1813 True 1279.0 1279 79.6770 621 2453 1 chr6B.!!$R1 1832
8 TraesCS6D01G024300 chr6B 17217120 17221316 4196 False 711.5 728 91.2545 2339 2864 2 chr6B.!!$F4 525
9 TraesCS6D01G024300 chr6B 16995927 16996964 1037 False 701.0 701 79.1790 664 1691 1 chr6B.!!$F2 1027
10 TraesCS6D01G024300 chr6B 16628284 16629300 1016 False 527.0 527 76.5940 662 1691 1 chr6B.!!$F1 1029

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
584 585 0.108662 TCATCATTCGTCTGTGCGCT 60.109 50.0 9.73 0.0 0.0 5.92 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2063 2089 1.004745 AGGTAGCACTTCATGGTTGGG 59.995 52.381 0.0 0.0 40.36 4.12 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
79 80 9.729281 AATGAACTTTTGCTAAATTGGATGATT 57.271 25.926 0.00 0.00 0.00 2.57
80 81 9.729281 ATGAACTTTTGCTAAATTGGATGATTT 57.271 25.926 0.00 0.00 33.95 2.17
81 82 9.558396 TGAACTTTTGCTAAATTGGATGATTTT 57.442 25.926 0.00 0.00 31.96 1.82
255 256 3.532501 AAAAACTGGGGTGGCACG 58.467 55.556 12.17 0.00 0.00 5.34
256 257 2.791868 AAAAACTGGGGTGGCACGC 61.792 57.895 24.88 24.88 38.67 5.34
257 258 3.731766 AAAACTGGGGTGGCACGCT 62.732 57.895 30.05 11.52 39.78 5.07
258 259 2.346284 AAAACTGGGGTGGCACGCTA 62.346 55.000 30.05 24.78 39.78 4.26
259 260 2.748058 AAACTGGGGTGGCACGCTAG 62.748 60.000 35.26 35.26 43.54 3.42
260 261 3.706373 CTGGGGTGGCACGCTAGT 61.706 66.667 31.10 0.00 39.78 2.57
279 280 4.813235 GGCCGGCCCATGCTAACA 62.813 66.667 36.64 0.00 37.74 2.41
280 281 3.211963 GCCGGCCCATGCTAACAG 61.212 66.667 18.11 0.00 37.74 3.16
281 282 3.211963 CCGGCCCATGCTAACAGC 61.212 66.667 0.00 0.00 42.82 4.40
282 283 3.576356 CGGCCCATGCTAACAGCG 61.576 66.667 0.00 0.00 46.26 5.18
283 284 3.892581 GGCCCATGCTAACAGCGC 61.893 66.667 0.00 0.00 46.26 5.92
284 285 2.825836 GCCCATGCTAACAGCGCT 60.826 61.111 2.64 2.64 46.26 5.92
285 286 3.104766 CCCATGCTAACAGCGCTG 58.895 61.111 34.89 34.89 46.26 5.18
286 287 1.746615 CCCATGCTAACAGCGCTGT 60.747 57.895 36.44 36.44 46.26 4.40
287 288 0.461870 CCCATGCTAACAGCGCTGTA 60.462 55.000 40.76 26.86 46.26 2.74
288 289 0.933097 CCATGCTAACAGCGCTGTAG 59.067 55.000 40.76 33.01 46.26 2.74
289 290 0.933097 CATGCTAACAGCGCTGTAGG 59.067 55.000 40.76 32.99 46.26 3.18
290 291 0.811616 ATGCTAACAGCGCTGTAGGC 60.812 55.000 37.88 37.88 46.26 3.93
299 300 2.709475 GCTGTAGGCGCCAAATCG 59.291 61.111 31.54 13.68 0.00 3.34
300 301 2.106683 GCTGTAGGCGCCAAATCGT 61.107 57.895 31.54 9.39 0.00 3.73
301 302 1.644786 GCTGTAGGCGCCAAATCGTT 61.645 55.000 31.54 8.51 0.00 3.85
302 303 1.647346 CTGTAGGCGCCAAATCGTTA 58.353 50.000 31.54 7.29 0.00 3.18
303 304 2.004017 CTGTAGGCGCCAAATCGTTAA 58.996 47.619 31.54 2.01 0.00 2.01
304 305 1.733360 TGTAGGCGCCAAATCGTTAAC 59.267 47.619 31.54 11.92 0.00 2.01
305 306 1.000884 TAGGCGCCAAATCGTTAACG 58.999 50.000 31.54 21.85 41.45 3.18
306 307 1.226184 GGCGCCAAATCGTTAACGG 60.226 57.895 26.51 11.98 40.29 4.44
307 308 1.226184 GCGCCAAATCGTTAACGGG 60.226 57.895 26.51 19.97 40.29 5.28
308 309 1.226184 CGCCAAATCGTTAACGGGC 60.226 57.895 26.47 26.47 38.82 6.13
309 310 1.226184 GCCAAATCGTTAACGGGCG 60.226 57.895 26.51 13.08 40.29 6.13
310 311 1.226184 CCAAATCGTTAACGGGCGC 60.226 57.895 26.51 0.00 40.29 6.53
311 312 1.226184 CAAATCGTTAACGGGCGCC 60.226 57.895 26.51 21.18 40.29 6.53
312 313 1.376295 AAATCGTTAACGGGCGCCT 60.376 52.632 28.56 9.55 40.29 5.52
313 314 1.641123 AAATCGTTAACGGGCGCCTG 61.641 55.000 33.73 33.73 40.29 4.85
316 317 3.799755 GTTAACGGGCGCCTGCAG 61.800 66.667 35.17 20.86 45.35 4.41
331 332 2.108566 CAGCGCTGCATAGGAGCT 59.891 61.111 26.68 0.00 40.21 4.09
332 333 1.955157 CAGCGCTGCATAGGAGCTC 60.955 63.158 26.68 4.71 37.72 4.09
333 334 2.664518 GCGCTGCATAGGAGCTCC 60.665 66.667 26.22 26.22 34.03 4.70
334 335 2.030262 CGCTGCATAGGAGCTCCC 59.970 66.667 29.54 14.36 36.42 4.30
336 337 1.835693 GCTGCATAGGAGCTCCCTT 59.164 57.895 29.54 14.62 44.85 3.95
337 338 0.182299 GCTGCATAGGAGCTCCCTTT 59.818 55.000 29.54 13.83 44.85 3.11
338 339 1.964552 CTGCATAGGAGCTCCCTTTG 58.035 55.000 29.54 23.00 44.85 2.77
339 340 1.487976 CTGCATAGGAGCTCCCTTTGA 59.512 52.381 29.54 10.13 44.85 2.69
340 341 1.210478 TGCATAGGAGCTCCCTTTGAC 59.790 52.381 29.54 18.01 44.85 3.18
341 342 1.475930 GCATAGGAGCTCCCTTTGACC 60.476 57.143 29.54 7.78 44.85 4.02
342 343 2.122768 CATAGGAGCTCCCTTTGACCT 58.877 52.381 29.54 10.66 44.85 3.85
343 344 2.344093 TAGGAGCTCCCTTTGACCTT 57.656 50.000 29.54 9.89 44.85 3.50
344 345 1.450360 AGGAGCTCCCTTTGACCTTT 58.550 50.000 29.54 3.28 44.85 3.11
345 346 1.352687 AGGAGCTCCCTTTGACCTTTC 59.647 52.381 29.54 0.00 44.85 2.62
346 347 1.614583 GGAGCTCCCTTTGACCTTTCC 60.615 57.143 23.19 0.00 0.00 3.13
347 348 1.352687 GAGCTCCCTTTGACCTTTCCT 59.647 52.381 0.87 0.00 0.00 3.36
348 349 1.783365 AGCTCCCTTTGACCTTTCCTT 59.217 47.619 0.00 0.00 0.00 3.36
349 350 2.177888 AGCTCCCTTTGACCTTTCCTTT 59.822 45.455 0.00 0.00 0.00 3.11
350 351 2.297315 GCTCCCTTTGACCTTTCCTTTG 59.703 50.000 0.00 0.00 0.00 2.77
351 352 2.297315 CTCCCTTTGACCTTTCCTTTGC 59.703 50.000 0.00 0.00 0.00 3.68
352 353 2.091333 TCCCTTTGACCTTTCCTTTGCT 60.091 45.455 0.00 0.00 0.00 3.91
353 354 3.139397 TCCCTTTGACCTTTCCTTTGCTA 59.861 43.478 0.00 0.00 0.00 3.49
354 355 3.895041 CCCTTTGACCTTTCCTTTGCTAA 59.105 43.478 0.00 0.00 0.00 3.09
355 356 4.343814 CCCTTTGACCTTTCCTTTGCTAAA 59.656 41.667 0.00 0.00 0.00 1.85
356 357 5.163353 CCCTTTGACCTTTCCTTTGCTAAAA 60.163 40.000 0.00 0.00 0.00 1.52
357 358 6.345298 CCTTTGACCTTTCCTTTGCTAAAAA 58.655 36.000 0.00 0.00 0.00 1.94
358 359 6.479990 CCTTTGACCTTTCCTTTGCTAAAAAG 59.520 38.462 0.00 0.00 0.00 2.27
363 364 6.603237 CCTTTCCTTTGCTAAAAAGGTTTG 57.397 37.500 14.76 7.42 45.37 2.93
364 365 5.527214 CCTTTCCTTTGCTAAAAAGGTTTGG 59.473 40.000 14.76 11.40 45.37 3.28
365 366 4.681074 TCCTTTGCTAAAAAGGTTTGGG 57.319 40.909 14.76 0.00 45.37 4.12
366 367 3.138304 CCTTTGCTAAAAAGGTTTGGGC 58.862 45.455 8.42 0.00 41.38 5.36
367 368 3.181455 CCTTTGCTAAAAAGGTTTGGGCT 60.181 43.478 8.42 0.00 41.38 5.19
368 369 4.039852 CCTTTGCTAAAAAGGTTTGGGCTA 59.960 41.667 8.42 0.00 41.38 3.93
369 370 4.594123 TTGCTAAAAAGGTTTGGGCTAC 57.406 40.909 0.00 0.00 32.00 3.58
370 371 2.894765 TGCTAAAAAGGTTTGGGCTACC 59.105 45.455 0.00 0.00 35.85 3.18
374 375 4.843624 AGGTTTGGGCTACCTTGC 57.156 55.556 0.00 0.00 43.45 4.01
375 376 2.164393 AGGTTTGGGCTACCTTGCT 58.836 52.632 0.00 0.00 43.45 3.91
376 377 0.251341 AGGTTTGGGCTACCTTGCTG 60.251 55.000 0.00 0.00 43.45 4.41
377 378 1.586541 GTTTGGGCTACCTTGCTGC 59.413 57.895 0.00 0.00 37.76 5.25
378 379 1.152599 TTTGGGCTACCTTGCTGCA 59.847 52.632 0.00 0.00 37.76 4.41
379 380 1.178534 TTTGGGCTACCTTGCTGCAC 61.179 55.000 0.00 0.00 37.76 4.57
380 381 2.067932 TTGGGCTACCTTGCTGCACT 62.068 55.000 0.00 0.00 37.76 4.40
381 382 1.303643 GGGCTACCTTGCTGCACTT 60.304 57.895 0.00 0.00 0.00 3.16
382 383 0.895559 GGGCTACCTTGCTGCACTTT 60.896 55.000 0.00 0.00 0.00 2.66
383 384 1.613255 GGGCTACCTTGCTGCACTTTA 60.613 52.381 0.00 0.00 0.00 1.85
384 385 2.369394 GGCTACCTTGCTGCACTTTAT 58.631 47.619 0.00 0.00 0.00 1.40
385 386 2.755103 GGCTACCTTGCTGCACTTTATT 59.245 45.455 0.00 0.00 0.00 1.40
386 387 3.193479 GGCTACCTTGCTGCACTTTATTT 59.807 43.478 0.00 0.00 0.00 1.40
387 388 4.398044 GGCTACCTTGCTGCACTTTATTTA 59.602 41.667 0.00 0.00 0.00 1.40
388 389 5.332707 GCTACCTTGCTGCACTTTATTTAC 58.667 41.667 0.00 0.00 0.00 2.01
389 390 4.783764 ACCTTGCTGCACTTTATTTACC 57.216 40.909 0.00 0.00 0.00 2.85
390 391 3.190535 ACCTTGCTGCACTTTATTTACCG 59.809 43.478 0.00 0.00 0.00 4.02
391 392 3.190535 CCTTGCTGCACTTTATTTACCGT 59.809 43.478 0.00 0.00 0.00 4.83
392 393 4.320935 CCTTGCTGCACTTTATTTACCGTT 60.321 41.667 0.00 0.00 0.00 4.44
393 394 5.106475 CCTTGCTGCACTTTATTTACCGTTA 60.106 40.000 0.00 0.00 0.00 3.18
394 395 6.404293 CCTTGCTGCACTTTATTTACCGTTAT 60.404 38.462 0.00 0.00 0.00 1.89
395 396 6.114221 TGCTGCACTTTATTTACCGTTATC 57.886 37.500 0.00 0.00 0.00 1.75
396 397 5.644206 TGCTGCACTTTATTTACCGTTATCA 59.356 36.000 0.00 0.00 0.00 2.15
397 398 6.317642 TGCTGCACTTTATTTACCGTTATCAT 59.682 34.615 0.00 0.00 0.00 2.45
398 399 7.148154 TGCTGCACTTTATTTACCGTTATCATT 60.148 33.333 0.00 0.00 0.00 2.57
399 400 8.339714 GCTGCACTTTATTTACCGTTATCATTA 58.660 33.333 0.00 0.00 0.00 1.90
408 409 7.846644 TTTACCGTTATCATTATTTGTCCGT 57.153 32.000 0.00 0.00 0.00 4.69
409 410 7.846644 TTACCGTTATCATTATTTGTCCGTT 57.153 32.000 0.00 0.00 0.00 4.44
410 411 8.939201 TTACCGTTATCATTATTTGTCCGTTA 57.061 30.769 0.00 0.00 0.00 3.18
411 412 7.237920 ACCGTTATCATTATTTGTCCGTTAC 57.762 36.000 0.00 0.00 0.00 2.50
412 413 6.817641 ACCGTTATCATTATTTGTCCGTTACA 59.182 34.615 0.00 0.00 35.88 2.41
413 414 7.333921 ACCGTTATCATTATTTGTCCGTTACAA 59.666 33.333 0.00 0.00 46.41 2.41
424 425 6.811253 TTGTCCGTTACAAATTATCTTGCT 57.189 33.333 0.00 0.00 45.11 3.91
425 426 7.908827 TTGTCCGTTACAAATTATCTTGCTA 57.091 32.000 0.00 0.00 45.11 3.49
426 427 8.500753 TTGTCCGTTACAAATTATCTTGCTAT 57.499 30.769 0.00 0.00 45.11 2.97
427 428 8.138365 TGTCCGTTACAAATTATCTTGCTATC 57.862 34.615 0.00 0.00 34.29 2.08
428 429 7.766738 TGTCCGTTACAAATTATCTTGCTATCA 59.233 33.333 0.00 0.00 34.29 2.15
429 430 8.609176 GTCCGTTACAAATTATCTTGCTATCAA 58.391 33.333 0.00 0.00 0.00 2.57
430 431 9.168451 TCCGTTACAAATTATCTTGCTATCAAA 57.832 29.630 0.00 0.00 0.00 2.69
431 432 9.221775 CCGTTACAAATTATCTTGCTATCAAAC 57.778 33.333 0.00 0.00 0.00 2.93
432 433 9.988350 CGTTACAAATTATCTTGCTATCAAACT 57.012 29.630 0.00 0.00 0.00 2.66
437 438 9.855361 CAAATTATCTTGCTATCAAACTACTCG 57.145 33.333 0.00 0.00 0.00 4.18
438 439 9.601217 AAATTATCTTGCTATCAAACTACTCGT 57.399 29.630 0.00 0.00 0.00 4.18
439 440 9.601217 AATTATCTTGCTATCAAACTACTCGTT 57.399 29.630 0.00 0.00 37.47 3.85
441 442 7.988904 ATCTTGCTATCAAACTACTCGTTAC 57.011 36.000 0.00 0.00 33.90 2.50
442 443 6.327934 TCTTGCTATCAAACTACTCGTTACC 58.672 40.000 0.00 0.00 33.90 2.85
443 444 4.665212 TGCTATCAAACTACTCGTTACCG 58.335 43.478 0.00 0.00 33.90 4.02
444 445 4.395854 TGCTATCAAACTACTCGTTACCGA 59.604 41.667 0.00 0.00 41.73 4.69
445 446 4.732442 GCTATCAAACTACTCGTTACCGAC 59.268 45.833 0.00 0.00 38.40 4.79
446 447 4.771590 ATCAAACTACTCGTTACCGACA 57.228 40.909 0.00 0.00 38.40 4.35
447 448 4.566545 TCAAACTACTCGTTACCGACAA 57.433 40.909 0.00 0.00 38.40 3.18
448 449 5.125100 TCAAACTACTCGTTACCGACAAT 57.875 39.130 0.00 0.00 38.40 2.71
449 450 5.531634 TCAAACTACTCGTTACCGACAATT 58.468 37.500 0.00 0.00 38.40 2.32
450 451 5.984926 TCAAACTACTCGTTACCGACAATTT 59.015 36.000 0.00 0.00 38.40 1.82
451 452 6.144402 TCAAACTACTCGTTACCGACAATTTC 59.856 38.462 0.00 0.00 38.40 2.17
452 453 5.125100 ACTACTCGTTACCGACAATTTCA 57.875 39.130 0.00 0.00 38.40 2.69
453 454 5.159209 ACTACTCGTTACCGACAATTTCAG 58.841 41.667 0.00 0.00 38.40 3.02
454 455 3.986277 ACTCGTTACCGACAATTTCAGT 58.014 40.909 0.00 0.00 38.40 3.41
455 456 3.739300 ACTCGTTACCGACAATTTCAGTG 59.261 43.478 0.00 0.00 38.40 3.66
456 457 2.477375 TCGTTACCGACAATTTCAGTGC 59.523 45.455 0.00 0.00 38.40 4.40
457 458 2.478894 CGTTACCGACAATTTCAGTGCT 59.521 45.455 0.00 0.00 35.63 4.40
458 459 3.059188 CGTTACCGACAATTTCAGTGCTT 60.059 43.478 0.00 0.00 35.63 3.91
459 460 4.219033 GTTACCGACAATTTCAGTGCTTG 58.781 43.478 0.00 0.00 0.00 4.01
460 461 1.001378 ACCGACAATTTCAGTGCTTGC 60.001 47.619 0.00 0.00 0.00 4.01
461 462 1.001487 CCGACAATTTCAGTGCTTGCA 60.001 47.619 0.00 0.00 0.00 4.08
462 463 2.313234 CGACAATTTCAGTGCTTGCAG 58.687 47.619 0.00 0.00 0.00 4.41
463 464 2.031769 CGACAATTTCAGTGCTTGCAGA 60.032 45.455 0.00 0.00 0.00 4.26
464 465 3.548616 CGACAATTTCAGTGCTTGCAGAA 60.549 43.478 0.00 0.00 0.00 3.02
465 466 4.362279 GACAATTTCAGTGCTTGCAGAAA 58.638 39.130 10.82 10.82 34.83 2.52
466 467 4.952460 ACAATTTCAGTGCTTGCAGAAAT 58.048 34.783 13.49 13.49 41.11 2.17
467 468 5.362263 ACAATTTCAGTGCTTGCAGAAATT 58.638 33.333 20.18 20.18 46.05 1.82
468 469 6.514947 ACAATTTCAGTGCTTGCAGAAATTA 58.485 32.000 22.93 3.86 44.39 1.40
469 470 6.421801 ACAATTTCAGTGCTTGCAGAAATTAC 59.578 34.615 22.93 3.25 44.39 1.89
470 471 4.503741 TTCAGTGCTTGCAGAAATTACC 57.496 40.909 0.00 0.00 0.00 2.85
471 472 3.754965 TCAGTGCTTGCAGAAATTACCT 58.245 40.909 0.00 0.00 0.00 3.08
472 473 4.144297 TCAGTGCTTGCAGAAATTACCTT 58.856 39.130 0.00 0.00 0.00 3.50
473 474 5.312895 TCAGTGCTTGCAGAAATTACCTTA 58.687 37.500 0.00 0.00 0.00 2.69
474 475 5.181245 TCAGTGCTTGCAGAAATTACCTTAC 59.819 40.000 0.00 0.00 0.00 2.34
475 476 5.182001 CAGTGCTTGCAGAAATTACCTTACT 59.818 40.000 0.00 0.00 0.00 2.24
476 477 5.182001 AGTGCTTGCAGAAATTACCTTACTG 59.818 40.000 0.00 0.00 0.00 2.74
477 478 5.181245 GTGCTTGCAGAAATTACCTTACTGA 59.819 40.000 0.00 0.00 0.00 3.41
478 479 5.767665 TGCTTGCAGAAATTACCTTACTGAA 59.232 36.000 0.00 0.00 0.00 3.02
479 480 6.264292 TGCTTGCAGAAATTACCTTACTGAAA 59.736 34.615 0.00 0.00 0.00 2.69
480 481 7.145323 GCTTGCAGAAATTACCTTACTGAAAA 58.855 34.615 0.00 0.00 0.00 2.29
481 482 7.114953 GCTTGCAGAAATTACCTTACTGAAAAC 59.885 37.037 0.00 0.00 0.00 2.43
482 483 7.575414 TGCAGAAATTACCTTACTGAAAACA 57.425 32.000 0.00 0.00 0.00 2.83
483 484 7.648142 TGCAGAAATTACCTTACTGAAAACAG 58.352 34.615 0.00 0.00 0.00 3.16
484 485 6.582672 GCAGAAATTACCTTACTGAAAACAGC 59.417 38.462 0.00 0.00 0.00 4.40
485 486 7.522236 GCAGAAATTACCTTACTGAAAACAGCT 60.522 37.037 0.00 0.00 0.00 4.24
486 487 8.352942 CAGAAATTACCTTACTGAAAACAGCTT 58.647 33.333 0.00 0.00 0.00 3.74
487 488 8.352942 AGAAATTACCTTACTGAAAACAGCTTG 58.647 33.333 0.00 0.00 0.00 4.01
488 489 7.582667 AATTACCTTACTGAAAACAGCTTGT 57.417 32.000 0.00 0.00 0.00 3.16
489 490 6.613755 TTACCTTACTGAAAACAGCTTGTC 57.386 37.500 0.00 0.00 0.00 3.18
490 491 4.523083 ACCTTACTGAAAACAGCTTGTCA 58.477 39.130 0.00 0.00 0.00 3.58
491 492 5.133221 ACCTTACTGAAAACAGCTTGTCAT 58.867 37.500 0.00 0.00 0.00 3.06
492 493 5.594317 ACCTTACTGAAAACAGCTTGTCATT 59.406 36.000 0.00 0.00 0.00 2.57
493 494 6.145535 CCTTACTGAAAACAGCTTGTCATTC 58.854 40.000 0.00 0.00 31.06 2.67
494 495 4.574599 ACTGAAAACAGCTTGTCATTCC 57.425 40.909 0.00 0.00 30.01 3.01
495 496 4.210331 ACTGAAAACAGCTTGTCATTCCT 58.790 39.130 0.00 0.00 30.01 3.36
496 497 4.646492 ACTGAAAACAGCTTGTCATTCCTT 59.354 37.500 0.00 0.00 30.01 3.36
497 498 5.186996 TGAAAACAGCTTGTCATTCCTTC 57.813 39.130 0.00 0.00 30.01 3.46
498 499 4.889409 TGAAAACAGCTTGTCATTCCTTCT 59.111 37.500 0.00 0.00 30.01 2.85
499 500 4.843220 AAACAGCTTGTCATTCCTTCTG 57.157 40.909 0.00 0.00 0.00 3.02
500 501 2.157738 ACAGCTTGTCATTCCTTCTGC 58.842 47.619 0.00 0.00 0.00 4.26
501 502 2.224719 ACAGCTTGTCATTCCTTCTGCT 60.225 45.455 0.00 0.00 0.00 4.24
502 503 2.419324 CAGCTTGTCATTCCTTCTGCTC 59.581 50.000 0.00 0.00 0.00 4.26
503 504 1.742268 GCTTGTCATTCCTTCTGCTCC 59.258 52.381 0.00 0.00 0.00 4.70
504 505 2.617532 GCTTGTCATTCCTTCTGCTCCT 60.618 50.000 0.00 0.00 0.00 3.69
505 506 3.683802 CTTGTCATTCCTTCTGCTCCTT 58.316 45.455 0.00 0.00 0.00 3.36
506 507 3.063510 TGTCATTCCTTCTGCTCCTTG 57.936 47.619 0.00 0.00 0.00 3.61
507 508 2.373169 TGTCATTCCTTCTGCTCCTTGT 59.627 45.455 0.00 0.00 0.00 3.16
508 509 3.181440 TGTCATTCCTTCTGCTCCTTGTT 60.181 43.478 0.00 0.00 0.00 2.83
509 510 3.190118 GTCATTCCTTCTGCTCCTTGTTG 59.810 47.826 0.00 0.00 0.00 3.33
510 511 2.276732 TTCCTTCTGCTCCTTGTTGG 57.723 50.000 0.00 0.00 37.10 3.77
511 512 0.401738 TCCTTCTGCTCCTTGTTGGG 59.598 55.000 0.00 0.00 36.20 4.12
512 513 0.111253 CCTTCTGCTCCTTGTTGGGT 59.889 55.000 0.00 0.00 36.20 4.51
513 514 1.479389 CCTTCTGCTCCTTGTTGGGTT 60.479 52.381 0.00 0.00 36.20 4.11
514 515 1.882623 CTTCTGCTCCTTGTTGGGTTC 59.117 52.381 0.00 0.00 36.20 3.62
515 516 0.250295 TCTGCTCCTTGTTGGGTTCG 60.250 55.000 0.00 0.00 36.20 3.95
516 517 0.250295 CTGCTCCTTGTTGGGTTCGA 60.250 55.000 0.00 0.00 36.20 3.71
517 518 0.534203 TGCTCCTTGTTGGGTTCGAC 60.534 55.000 0.00 0.00 36.20 4.20
518 519 0.534203 GCTCCTTGTTGGGTTCGACA 60.534 55.000 0.00 0.00 35.60 4.35
519 520 1.226746 CTCCTTGTTGGGTTCGACAC 58.773 55.000 0.00 0.00 37.04 3.67
520 521 0.834612 TCCTTGTTGGGTTCGACACT 59.165 50.000 0.00 0.00 37.04 3.55
521 522 1.202604 TCCTTGTTGGGTTCGACACTC 60.203 52.381 0.00 0.00 37.04 3.51
522 523 1.202651 CCTTGTTGGGTTCGACACTCT 60.203 52.381 0.00 0.00 37.04 3.24
523 524 2.561569 CTTGTTGGGTTCGACACTCTT 58.438 47.619 0.00 0.00 37.04 2.85
524 525 3.493699 CCTTGTTGGGTTCGACACTCTTA 60.494 47.826 0.00 0.00 37.04 2.10
525 526 3.102052 TGTTGGGTTCGACACTCTTAC 57.898 47.619 0.00 0.00 32.62 2.34
526 527 2.431419 TGTTGGGTTCGACACTCTTACA 59.569 45.455 0.00 0.00 32.62 2.41
527 528 3.070446 TGTTGGGTTCGACACTCTTACAT 59.930 43.478 0.00 0.00 32.62 2.29
528 529 4.281435 TGTTGGGTTCGACACTCTTACATA 59.719 41.667 0.00 0.00 32.62 2.29
529 530 5.046878 TGTTGGGTTCGACACTCTTACATAT 60.047 40.000 0.00 0.00 32.62 1.78
530 531 5.258456 TGGGTTCGACACTCTTACATATC 57.742 43.478 0.00 0.00 0.00 1.63
531 532 4.201980 TGGGTTCGACACTCTTACATATCG 60.202 45.833 0.00 0.00 0.00 2.92
532 533 4.036027 GGGTTCGACACTCTTACATATCGA 59.964 45.833 0.00 0.00 36.85 3.59
533 534 5.449588 GGGTTCGACACTCTTACATATCGAA 60.450 44.000 2.99 2.99 43.90 3.71
534 535 6.032094 GGTTCGACACTCTTACATATCGAAA 58.968 40.000 8.30 0.00 46.48 3.46
535 536 6.196724 GGTTCGACACTCTTACATATCGAAAG 59.803 42.308 8.30 0.00 46.48 2.62
536 537 5.817988 TCGACACTCTTACATATCGAAAGG 58.182 41.667 0.00 0.00 35.80 3.11
537 538 5.587443 TCGACACTCTTACATATCGAAAGGA 59.413 40.000 0.00 0.00 35.80 3.36
538 539 5.681982 CGACACTCTTACATATCGAAAGGAC 59.318 44.000 0.00 0.00 0.00 3.85
539 540 6.458478 CGACACTCTTACATATCGAAAGGACT 60.458 42.308 0.00 0.00 0.00 3.85
540 541 7.254692 CGACACTCTTACATATCGAAAGGACTA 60.255 40.741 0.00 0.00 0.00 2.59
541 542 7.705214 ACACTCTTACATATCGAAAGGACTAC 58.295 38.462 0.00 0.00 0.00 2.73
542 543 6.851837 CACTCTTACATATCGAAAGGACTACG 59.148 42.308 0.00 0.00 0.00 3.51
543 544 6.765036 ACTCTTACATATCGAAAGGACTACGA 59.235 38.462 0.00 0.00 40.18 3.43
544 545 7.444792 ACTCTTACATATCGAAAGGACTACGAT 59.555 37.037 14.84 14.84 46.07 3.73
545 546 8.162878 TCTTACATATCGAAAGGACTACGATT 57.837 34.615 15.38 5.35 42.71 3.34
546 547 8.074370 TCTTACATATCGAAAGGACTACGATTG 58.926 37.037 15.38 14.65 42.71 2.67
547 548 6.387041 ACATATCGAAAGGACTACGATTGA 57.613 37.500 15.38 4.28 42.71 2.57
548 549 6.982852 ACATATCGAAAGGACTACGATTGAT 58.017 36.000 15.38 5.85 42.71 2.57
549 550 7.085116 ACATATCGAAAGGACTACGATTGATC 58.915 38.462 15.38 0.00 42.71 2.92
550 551 5.776173 ATCGAAAGGACTACGATTGATCT 57.224 39.130 0.00 0.00 42.71 2.75
551 552 5.171147 TCGAAAGGACTACGATTGATCTC 57.829 43.478 0.00 0.00 0.00 2.75
552 553 4.036498 TCGAAAGGACTACGATTGATCTCC 59.964 45.833 0.00 0.00 0.00 3.71
553 554 4.036971 CGAAAGGACTACGATTGATCTCCT 59.963 45.833 0.00 0.00 31.37 3.69
554 555 5.238868 CGAAAGGACTACGATTGATCTCCTA 59.761 44.000 0.00 0.00 30.33 2.94
555 556 6.072397 CGAAAGGACTACGATTGATCTCCTAT 60.072 42.308 0.00 0.00 30.33 2.57
556 557 7.119407 CGAAAGGACTACGATTGATCTCCTATA 59.881 40.741 0.00 0.00 30.33 1.31
557 558 7.690952 AAGGACTACGATTGATCTCCTATAC 57.309 40.000 0.00 0.00 30.33 1.47
558 559 7.023171 AGGACTACGATTGATCTCCTATACT 57.977 40.000 0.00 0.00 29.15 2.12
559 560 7.463431 AGGACTACGATTGATCTCCTATACTT 58.537 38.462 0.00 0.00 29.15 2.24
560 561 7.392113 AGGACTACGATTGATCTCCTATACTTG 59.608 40.741 0.00 0.00 29.15 3.16
561 562 7.175293 GGACTACGATTGATCTCCTATACTTGT 59.825 40.741 0.00 0.00 0.00 3.16
562 563 7.877003 ACTACGATTGATCTCCTATACTTGTG 58.123 38.462 0.00 0.00 0.00 3.33
563 564 6.090483 ACGATTGATCTCCTATACTTGTGG 57.910 41.667 0.00 0.00 0.00 4.17
564 565 5.011125 ACGATTGATCTCCTATACTTGTGGG 59.989 44.000 0.00 0.00 0.00 4.61
565 566 5.011125 CGATTGATCTCCTATACTTGTGGGT 59.989 44.000 0.00 0.00 0.00 4.51
566 567 5.871396 TTGATCTCCTATACTTGTGGGTC 57.129 43.478 0.00 0.00 0.00 4.46
567 568 4.878968 TGATCTCCTATACTTGTGGGTCA 58.121 43.478 0.00 0.00 0.00 4.02
568 569 5.467738 TGATCTCCTATACTTGTGGGTCAT 58.532 41.667 0.00 0.00 0.00 3.06
569 570 5.540337 TGATCTCCTATACTTGTGGGTCATC 59.460 44.000 0.00 0.00 0.00 2.92
570 571 4.878968 TCTCCTATACTTGTGGGTCATCA 58.121 43.478 0.00 0.00 0.00 3.07
584 585 0.108662 TCATCATTCGTCTGTGCGCT 60.109 50.000 9.73 0.00 0.00 5.92
590 591 1.358725 TTCGTCTGTGCGCTAATGGC 61.359 55.000 9.73 0.00 37.64 4.40
900 918 4.344104 AGTTACAGCTGGCCACAATTAAT 58.656 39.130 19.93 0.00 0.00 1.40
950 968 1.523938 GGCATGGTTCTAGCGTCCC 60.524 63.158 0.00 0.00 0.00 4.46
967 986 1.370437 CCCATCCTCGCAGATCCTG 59.630 63.158 0.00 0.00 33.89 3.86
1287 1306 2.039480 AGTTCAAGAGCATGCAAGAGGA 59.961 45.455 21.98 7.71 0.00 3.71
1433 1452 2.123409 GCCTTGAAAAGTGGCCACA 58.877 52.632 36.39 14.12 44.25 4.17
1498 1517 3.034635 GGACTCAATCCTCAAGAGCCTA 58.965 50.000 0.00 0.00 45.22 3.93
1625 1644 1.302832 CCACAGCAACAGGAGGGTC 60.303 63.158 0.00 0.00 0.00 4.46
1663 1682 2.298661 CGAAAGGGCCCCTACCACT 61.299 63.158 21.43 0.00 31.13 4.00
1676 1695 4.899457 CCCCTACCACTGTGATCTACAATA 59.101 45.833 9.86 0.00 39.20 1.90
1978 2002 5.916661 TGGTTGCAACTTTTAGGTTGTAA 57.083 34.783 27.64 4.59 44.76 2.41
2013 2037 4.931002 GTCAACATATTTTGCCAAGCATGT 59.069 37.500 0.00 0.00 38.76 3.21
2035 2060 8.862074 CATGTTTTTGCTCGATCAAAATGATTA 58.138 29.630 23.35 9.22 43.08 1.75
2063 2089 4.142816 ACTCTTAGCATTGCATCAAACGAC 60.143 41.667 11.91 0.00 0.00 4.34
2307 2337 4.734398 TTCAAAAGCAGGTGATTGTGTT 57.266 36.364 0.00 0.00 31.06 3.32
2330 2360 5.807909 TGACCAGTTTCATCATCAATCAGA 58.192 37.500 0.00 0.00 0.00 3.27
2371 2402 3.694072 GGGCATTGTGTTTGAGCTATACA 59.306 43.478 0.00 0.00 0.00 2.29
2372 2403 4.438744 GGGCATTGTGTTTGAGCTATACAC 60.439 45.833 15.05 15.05 41.85 2.90
2400 2431 4.324331 GCTACTATGAGAACCCCCAAACTT 60.324 45.833 0.00 0.00 0.00 2.66
2428 2459 3.243501 GGTGCATGTTGTGACAGAACATT 60.244 43.478 24.12 10.34 41.16 2.71
2453 2484 5.242393 GGATATATGAATGCACTTGCCACTT 59.758 40.000 0.00 0.00 41.18 3.16
2454 2485 6.239120 GGATATATGAATGCACTTGCCACTTT 60.239 38.462 0.00 0.00 41.18 2.66
2498 2529 8.210946 CCCACAAGTATAGAGGATCAATTGTAA 58.789 37.037 5.13 0.00 37.82 2.41
2499 2530 9.046296 CCACAAGTATAGAGGATCAATTGTAAC 57.954 37.037 5.13 0.00 37.82 2.50
2530 2561 7.392113 TCGATAAATAAGTGTGTCAAACCCAAT 59.608 33.333 0.00 0.00 0.00 3.16
2593 2624 3.103738 CGACCACCGATAAAACTCTACG 58.896 50.000 0.00 0.00 41.76 3.51
2602 2633 5.229469 CCGATAAAACTCTACGCACACTTAG 59.771 44.000 0.00 0.00 0.00 2.18
2609 2640 2.415168 TCTACGCACACTTAGCATTTGC 59.585 45.455 0.00 0.00 42.49 3.68
2751 2782 6.537660 AGGTTAGTATAGCGAATGTGGAAAAC 59.462 38.462 0.00 0.00 0.00 2.43
2766 2797 4.587262 GTGGAAAACTGGTGGTAGGATTTT 59.413 41.667 0.00 0.00 0.00 1.82
2767 2798 5.069914 GTGGAAAACTGGTGGTAGGATTTTT 59.930 40.000 0.00 0.00 0.00 1.94
2774 2805 6.557568 ACTGGTGGTAGGATTTTTGGAATTA 58.442 36.000 0.00 0.00 0.00 1.40
2792 2824 5.047731 GGAATTATCCCTAAGCAATTGGCTC 60.048 44.000 7.72 0.00 46.29 4.70
2835 6543 1.668826 TTTATGTGGGAGAGGCCACT 58.331 50.000 5.01 2.83 38.95 4.00
2845 6553 2.124403 AGGCCACTGCTAGCATGC 60.124 61.111 19.72 19.88 37.74 4.06
2864 6572 4.871871 TGCCATCCCTTACTTGGAATTA 57.128 40.909 0.00 0.00 35.03 1.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
53 54 9.729281 AATCATCCAATTTAGCAAAAGTTCATT 57.271 25.926 0.00 0.00 0.00 2.57
54 55 9.729281 AAATCATCCAATTTAGCAAAAGTTCAT 57.271 25.926 0.00 0.00 0.00 2.57
55 56 9.558396 AAAATCATCCAATTTAGCAAAAGTTCA 57.442 25.926 0.00 0.00 0.00 3.18
238 239 2.791868 GCGTGCCACCCCAGTTTTT 61.792 57.895 0.00 0.00 0.00 1.94
239 240 2.346284 TAGCGTGCCACCCCAGTTTT 62.346 55.000 0.00 0.00 0.00 2.43
240 241 2.748058 CTAGCGTGCCACCCCAGTTT 62.748 60.000 0.00 0.00 0.00 2.66
241 242 3.246112 TAGCGTGCCACCCCAGTT 61.246 61.111 0.00 0.00 0.00 3.16
242 243 3.706373 CTAGCGTGCCACCCCAGT 61.706 66.667 0.00 0.00 0.00 4.00
243 244 3.706373 ACTAGCGTGCCACCCCAG 61.706 66.667 0.00 0.00 0.00 4.45
244 245 4.015406 CACTAGCGTGCCACCCCA 62.015 66.667 0.00 0.00 33.82 4.96
245 246 4.778143 CCACTAGCGTGCCACCCC 62.778 72.222 0.00 0.00 39.86 4.95
246 247 4.778143 CCCACTAGCGTGCCACCC 62.778 72.222 0.00 0.00 39.86 4.61
262 263 4.813235 TGTTAGCATGGGCCGGCC 62.813 66.667 38.57 38.57 42.56 6.13
263 264 3.211963 CTGTTAGCATGGGCCGGC 61.212 66.667 21.18 21.18 42.56 6.13
264 265 3.211963 GCTGTTAGCATGGGCCGG 61.212 66.667 0.00 0.00 41.89 6.13
265 266 3.576356 CGCTGTTAGCATGGGCCG 61.576 66.667 0.00 0.00 42.58 6.13
266 267 3.892581 GCGCTGTTAGCATGGGCC 61.893 66.667 0.00 0.00 42.58 5.80
267 268 2.825836 AGCGCTGTTAGCATGGGC 60.826 61.111 10.39 8.95 42.58 5.36
268 269 0.461870 TACAGCGCTGTTAGCATGGG 60.462 55.000 44.31 15.40 42.58 4.00
269 270 0.933097 CTACAGCGCTGTTAGCATGG 59.067 55.000 44.31 19.56 42.58 3.66
270 271 0.933097 CCTACAGCGCTGTTAGCATG 59.067 55.000 44.31 25.76 42.58 4.06
271 272 0.811616 GCCTACAGCGCTGTTAGCAT 60.812 55.000 44.31 23.50 42.58 3.79
272 273 1.447838 GCCTACAGCGCTGTTAGCA 60.448 57.895 44.31 27.20 42.58 3.49
273 274 3.400007 GCCTACAGCGCTGTTAGC 58.600 61.111 44.31 38.44 41.83 3.09
282 283 1.644786 AACGATTTGGCGCCTACAGC 61.645 55.000 29.70 13.07 38.52 4.40
283 284 1.647346 TAACGATTTGGCGCCTACAG 58.353 50.000 29.70 17.06 33.86 2.74
284 285 1.733360 GTTAACGATTTGGCGCCTACA 59.267 47.619 29.70 11.91 33.86 2.74
285 286 1.267186 CGTTAACGATTTGGCGCCTAC 60.267 52.381 29.70 14.59 43.02 3.18
286 287 1.000884 CGTTAACGATTTGGCGCCTA 58.999 50.000 29.70 19.10 43.02 3.93
287 288 1.641123 CCGTTAACGATTTGGCGCCT 61.641 55.000 28.79 7.33 43.02 5.52
288 289 1.226184 CCGTTAACGATTTGGCGCC 60.226 57.895 28.79 22.73 43.02 6.53
289 290 1.226184 CCCGTTAACGATTTGGCGC 60.226 57.895 28.79 0.00 43.02 6.53
290 291 1.226184 GCCCGTTAACGATTTGGCG 60.226 57.895 28.79 10.13 43.02 5.69
291 292 1.226184 CGCCCGTTAACGATTTGGC 60.226 57.895 28.79 27.43 43.02 4.52
292 293 1.226184 GCGCCCGTTAACGATTTGG 60.226 57.895 28.79 20.86 43.02 3.28
293 294 1.226184 GGCGCCCGTTAACGATTTG 60.226 57.895 28.79 15.63 43.02 2.32
294 295 1.376295 AGGCGCCCGTTAACGATTT 60.376 52.632 28.79 0.00 43.02 2.17
295 296 2.104253 CAGGCGCCCGTTAACGATT 61.104 57.895 28.79 0.00 43.02 3.34
296 297 2.510691 CAGGCGCCCGTTAACGAT 60.511 61.111 28.79 0.00 43.02 3.73
299 300 3.799755 CTGCAGGCGCCCGTTAAC 61.800 66.667 26.15 6.93 37.32 2.01
314 315 1.955157 GAGCTCCTATGCAGCGCTG 60.955 63.158 32.83 32.83 42.14 5.18
315 316 2.420890 GAGCTCCTATGCAGCGCT 59.579 61.111 2.64 2.64 42.14 5.92
316 317 2.664518 GGAGCTCCTATGCAGCGC 60.665 66.667 26.25 0.00 42.14 5.92
317 318 2.030262 GGGAGCTCCTATGCAGCG 59.970 66.667 31.36 0.00 42.14 5.18
318 319 3.560989 AGGGAGCTCCTATGCAGC 58.439 61.111 31.36 13.49 45.98 5.25
329 330 2.294449 AAGGAAAGGTCAAAGGGAGC 57.706 50.000 0.00 0.00 44.43 4.70
330 331 2.297315 GCAAAGGAAAGGTCAAAGGGAG 59.703 50.000 0.00 0.00 0.00 4.30
331 332 2.091333 AGCAAAGGAAAGGTCAAAGGGA 60.091 45.455 0.00 0.00 0.00 4.20
332 333 2.319844 AGCAAAGGAAAGGTCAAAGGG 58.680 47.619 0.00 0.00 0.00 3.95
333 334 5.529581 TTTAGCAAAGGAAAGGTCAAAGG 57.470 39.130 0.00 0.00 0.00 3.11
334 335 7.468922 CTTTTTAGCAAAGGAAAGGTCAAAG 57.531 36.000 0.00 0.00 0.00 2.77
346 347 4.071961 AGCCCAAACCTTTTTAGCAAAG 57.928 40.909 0.00 0.00 0.00 2.77
347 348 4.202274 GGTAGCCCAAACCTTTTTAGCAAA 60.202 41.667 0.00 0.00 33.97 3.68
348 349 3.322541 GGTAGCCCAAACCTTTTTAGCAA 59.677 43.478 0.00 0.00 33.97 3.91
349 350 2.894765 GGTAGCCCAAACCTTTTTAGCA 59.105 45.455 0.00 0.00 33.97 3.49
350 351 3.162666 AGGTAGCCCAAACCTTTTTAGC 58.837 45.455 0.00 0.00 45.26 3.09
358 359 1.877576 GCAGCAAGGTAGCCCAAACC 61.878 60.000 0.00 0.00 37.27 3.27
359 360 1.178534 TGCAGCAAGGTAGCCCAAAC 61.179 55.000 0.00 0.00 34.23 2.93
360 361 1.152599 TGCAGCAAGGTAGCCCAAA 59.847 52.632 0.00 0.00 34.23 3.28
361 362 1.603455 GTGCAGCAAGGTAGCCCAA 60.603 57.895 0.00 0.00 34.23 4.12
362 363 2.034066 GTGCAGCAAGGTAGCCCA 59.966 61.111 0.00 0.00 34.23 5.36
363 364 0.895559 AAAGTGCAGCAAGGTAGCCC 60.896 55.000 0.00 0.00 34.23 5.19
364 365 1.821216 TAAAGTGCAGCAAGGTAGCC 58.179 50.000 0.00 0.00 34.23 3.93
365 366 4.440839 AAATAAAGTGCAGCAAGGTAGC 57.559 40.909 0.00 0.00 0.00 3.58
366 367 5.447279 CGGTAAATAAAGTGCAGCAAGGTAG 60.447 44.000 0.00 0.00 0.00 3.18
367 368 4.393680 CGGTAAATAAAGTGCAGCAAGGTA 59.606 41.667 0.00 0.00 0.00 3.08
368 369 3.190535 CGGTAAATAAAGTGCAGCAAGGT 59.809 43.478 0.00 0.00 0.00 3.50
369 370 3.190535 ACGGTAAATAAAGTGCAGCAAGG 59.809 43.478 0.00 0.00 0.00 3.61
370 371 4.419522 ACGGTAAATAAAGTGCAGCAAG 57.580 40.909 0.00 0.00 0.00 4.01
371 372 4.839668 AACGGTAAATAAAGTGCAGCAA 57.160 36.364 0.00 0.00 0.00 3.91
372 373 5.644206 TGATAACGGTAAATAAAGTGCAGCA 59.356 36.000 0.00 0.00 0.00 4.41
373 374 6.114221 TGATAACGGTAAATAAAGTGCAGC 57.886 37.500 0.00 0.00 0.00 5.25
382 383 9.545105 ACGGACAAATAATGATAACGGTAAATA 57.455 29.630 0.00 0.00 0.00 1.40
383 384 8.441312 ACGGACAAATAATGATAACGGTAAAT 57.559 30.769 0.00 0.00 0.00 1.40
384 385 7.846644 ACGGACAAATAATGATAACGGTAAA 57.153 32.000 0.00 0.00 0.00 2.01
385 386 7.846644 AACGGACAAATAATGATAACGGTAA 57.153 32.000 0.00 0.00 0.00 2.85
386 387 7.978414 TGTAACGGACAAATAATGATAACGGTA 59.022 33.333 0.00 0.00 34.15 4.02
387 388 6.817641 TGTAACGGACAAATAATGATAACGGT 59.182 34.615 0.00 0.00 34.15 4.83
388 389 7.236674 TGTAACGGACAAATAATGATAACGG 57.763 36.000 0.00 0.00 34.15 4.44
401 402 6.811253 AGCAAGATAATTTGTAACGGACAA 57.189 33.333 1.38 1.38 46.56 3.18
402 403 7.766738 TGATAGCAAGATAATTTGTAACGGACA 59.233 33.333 0.00 0.00 35.78 4.02
403 404 8.138365 TGATAGCAAGATAATTTGTAACGGAC 57.862 34.615 0.00 0.00 0.00 4.79
404 405 8.725405 TTGATAGCAAGATAATTTGTAACGGA 57.275 30.769 0.00 0.00 0.00 4.69
405 406 9.221775 GTTTGATAGCAAGATAATTTGTAACGG 57.778 33.333 0.00 0.00 35.04 4.44
406 407 9.988350 AGTTTGATAGCAAGATAATTTGTAACG 57.012 29.630 0.00 0.00 35.04 3.18
411 412 9.855361 CGAGTAGTTTGATAGCAAGATAATTTG 57.145 33.333 0.00 0.00 35.04 2.32
412 413 9.601217 ACGAGTAGTTTGATAGCAAGATAATTT 57.399 29.630 0.00 0.00 35.04 1.82
413 414 9.601217 AACGAGTAGTTTGATAGCAAGATAATT 57.399 29.630 0.00 0.00 40.88 1.40
415 416 9.512435 GTAACGAGTAGTTTGATAGCAAGATAA 57.488 33.333 0.00 0.00 43.86 1.75
416 417 8.133627 GGTAACGAGTAGTTTGATAGCAAGATA 58.866 37.037 0.00 0.00 43.86 1.98
417 418 6.979238 GGTAACGAGTAGTTTGATAGCAAGAT 59.021 38.462 0.00 0.00 43.86 2.40
418 419 6.327934 GGTAACGAGTAGTTTGATAGCAAGA 58.672 40.000 0.00 0.00 43.86 3.02
419 420 6.570690 GGTAACGAGTAGTTTGATAGCAAG 57.429 41.667 0.00 0.00 43.86 4.01
437 438 4.219033 CAAGCACTGAAATTGTCGGTAAC 58.781 43.478 0.00 0.00 44.55 2.50
438 439 3.304391 GCAAGCACTGAAATTGTCGGTAA 60.304 43.478 0.00 0.00 44.55 2.85
439 440 2.225491 GCAAGCACTGAAATTGTCGGTA 59.775 45.455 0.00 0.00 44.55 4.02
441 442 1.001487 TGCAAGCACTGAAATTGTCGG 60.001 47.619 0.00 0.00 38.74 4.79
442 443 2.031769 TCTGCAAGCACTGAAATTGTCG 60.032 45.455 0.00 0.00 0.00 4.35
443 444 3.631145 TCTGCAAGCACTGAAATTGTC 57.369 42.857 0.00 0.00 0.00 3.18
444 445 4.389890 TTTCTGCAAGCACTGAAATTGT 57.610 36.364 5.64 0.00 34.00 2.71
447 448 5.244626 AGGTAATTTCTGCAAGCACTGAAAT 59.755 36.000 13.36 13.36 44.91 2.17
448 449 4.584325 AGGTAATTTCTGCAAGCACTGAAA 59.416 37.500 10.57 10.57 40.37 2.69
449 450 4.144297 AGGTAATTTCTGCAAGCACTGAA 58.856 39.130 0.00 0.00 0.00 3.02
450 451 3.754965 AGGTAATTTCTGCAAGCACTGA 58.245 40.909 0.00 0.00 0.00 3.41
451 452 4.510038 AAGGTAATTTCTGCAAGCACTG 57.490 40.909 0.00 0.00 0.00 3.66
452 453 5.182001 CAGTAAGGTAATTTCTGCAAGCACT 59.818 40.000 0.00 0.00 30.73 4.40
453 454 5.181245 TCAGTAAGGTAATTTCTGCAAGCAC 59.819 40.000 0.00 0.00 36.52 4.40
454 455 5.312895 TCAGTAAGGTAATTTCTGCAAGCA 58.687 37.500 0.00 0.00 36.52 3.91
455 456 5.880054 TCAGTAAGGTAATTTCTGCAAGC 57.120 39.130 0.00 0.00 36.52 4.01
456 457 8.134895 TGTTTTCAGTAAGGTAATTTCTGCAAG 58.865 33.333 0.00 0.00 36.52 4.01
457 458 8.001881 TGTTTTCAGTAAGGTAATTTCTGCAA 57.998 30.769 0.00 0.00 36.52 4.08
458 459 7.575414 TGTTTTCAGTAAGGTAATTTCTGCA 57.425 32.000 0.00 0.00 36.52 4.41
475 476 4.889409 AGAAGGAATGACAAGCTGTTTTCA 59.111 37.500 0.00 0.00 29.71 2.69
476 477 5.218139 CAGAAGGAATGACAAGCTGTTTTC 58.782 41.667 0.00 0.00 0.00 2.29
477 478 4.500375 GCAGAAGGAATGACAAGCTGTTTT 60.500 41.667 0.00 0.00 0.00 2.43
478 479 3.005155 GCAGAAGGAATGACAAGCTGTTT 59.995 43.478 0.00 0.00 0.00 2.83
479 480 2.555757 GCAGAAGGAATGACAAGCTGTT 59.444 45.455 0.00 0.00 0.00 3.16
480 481 2.157738 GCAGAAGGAATGACAAGCTGT 58.842 47.619 0.00 0.00 0.00 4.40
481 482 2.419324 GAGCAGAAGGAATGACAAGCTG 59.581 50.000 0.00 0.00 0.00 4.24
482 483 2.617532 GGAGCAGAAGGAATGACAAGCT 60.618 50.000 0.00 0.00 0.00 3.74
483 484 1.742268 GGAGCAGAAGGAATGACAAGC 59.258 52.381 0.00 0.00 0.00 4.01
484 485 3.347077 AGGAGCAGAAGGAATGACAAG 57.653 47.619 0.00 0.00 0.00 3.16
485 486 3.181440 ACAAGGAGCAGAAGGAATGACAA 60.181 43.478 0.00 0.00 0.00 3.18
486 487 2.373169 ACAAGGAGCAGAAGGAATGACA 59.627 45.455 0.00 0.00 0.00 3.58
487 488 3.064900 ACAAGGAGCAGAAGGAATGAC 57.935 47.619 0.00 0.00 0.00 3.06
488 489 3.415212 CAACAAGGAGCAGAAGGAATGA 58.585 45.455 0.00 0.00 0.00 2.57
489 490 2.490903 CCAACAAGGAGCAGAAGGAATG 59.509 50.000 0.00 0.00 41.22 2.67
490 491 2.556114 CCCAACAAGGAGCAGAAGGAAT 60.556 50.000 0.00 0.00 41.22 3.01
491 492 1.202927 CCCAACAAGGAGCAGAAGGAA 60.203 52.381 0.00 0.00 41.22 3.36
492 493 0.401738 CCCAACAAGGAGCAGAAGGA 59.598 55.000 0.00 0.00 41.22 3.36
493 494 0.111253 ACCCAACAAGGAGCAGAAGG 59.889 55.000 0.00 0.00 41.22 3.46
494 495 1.882623 GAACCCAACAAGGAGCAGAAG 59.117 52.381 0.00 0.00 41.22 2.85
495 496 1.813862 CGAACCCAACAAGGAGCAGAA 60.814 52.381 0.00 0.00 41.22 3.02
496 497 0.250295 CGAACCCAACAAGGAGCAGA 60.250 55.000 0.00 0.00 41.22 4.26
497 498 0.250295 TCGAACCCAACAAGGAGCAG 60.250 55.000 0.00 0.00 41.22 4.24
498 499 0.534203 GTCGAACCCAACAAGGAGCA 60.534 55.000 0.00 0.00 41.22 4.26
499 500 0.534203 TGTCGAACCCAACAAGGAGC 60.534 55.000 0.00 0.00 41.22 4.70
500 501 1.202651 AGTGTCGAACCCAACAAGGAG 60.203 52.381 0.00 0.00 41.22 3.69
501 502 0.834612 AGTGTCGAACCCAACAAGGA 59.165 50.000 0.00 0.00 41.22 3.36
502 503 1.202651 AGAGTGTCGAACCCAACAAGG 60.203 52.381 0.00 0.00 37.03 3.61
503 504 2.240493 AGAGTGTCGAACCCAACAAG 57.760 50.000 0.00 0.00 0.00 3.16
504 505 2.702592 AAGAGTGTCGAACCCAACAA 57.297 45.000 0.00 0.00 0.00 2.83
505 506 2.431419 TGTAAGAGTGTCGAACCCAACA 59.569 45.455 0.00 0.00 0.00 3.33
506 507 3.102052 TGTAAGAGTGTCGAACCCAAC 57.898 47.619 0.00 0.00 0.00 3.77
507 508 5.657474 GATATGTAAGAGTGTCGAACCCAA 58.343 41.667 0.00 0.00 0.00 4.12
508 509 4.201980 CGATATGTAAGAGTGTCGAACCCA 60.202 45.833 0.00 0.00 31.74 4.51
509 510 4.036027 TCGATATGTAAGAGTGTCGAACCC 59.964 45.833 0.00 0.00 35.53 4.11
510 511 5.165911 TCGATATGTAAGAGTGTCGAACC 57.834 43.478 0.00 0.00 35.53 3.62
511 512 6.196724 CCTTTCGATATGTAAGAGTGTCGAAC 59.803 42.308 7.42 0.00 43.97 3.95
512 513 6.094464 TCCTTTCGATATGTAAGAGTGTCGAA 59.906 38.462 4.17 4.17 43.09 3.71
513 514 5.587443 TCCTTTCGATATGTAAGAGTGTCGA 59.413 40.000 0.00 0.00 36.44 4.20
514 515 5.681982 GTCCTTTCGATATGTAAGAGTGTCG 59.318 44.000 0.00 0.00 0.00 4.35
515 516 6.797454 AGTCCTTTCGATATGTAAGAGTGTC 58.203 40.000 0.00 0.00 0.00 3.67
516 517 6.777213 AGTCCTTTCGATATGTAAGAGTGT 57.223 37.500 0.00 0.00 0.00 3.55
517 518 6.851837 CGTAGTCCTTTCGATATGTAAGAGTG 59.148 42.308 0.00 0.00 0.00 3.51
518 519 6.765036 TCGTAGTCCTTTCGATATGTAAGAGT 59.235 38.462 0.00 0.00 0.00 3.24
519 520 7.187244 TCGTAGTCCTTTCGATATGTAAGAG 57.813 40.000 0.00 0.00 0.00 2.85
520 521 7.741027 ATCGTAGTCCTTTCGATATGTAAGA 57.259 36.000 0.00 0.00 41.46 2.10
521 522 8.074370 TCAATCGTAGTCCTTTCGATATGTAAG 58.926 37.037 0.00 0.00 42.22 2.34
522 523 7.933396 TCAATCGTAGTCCTTTCGATATGTAA 58.067 34.615 0.00 0.00 42.22 2.41
523 524 7.500720 TCAATCGTAGTCCTTTCGATATGTA 57.499 36.000 0.00 0.00 42.22 2.29
524 525 6.387041 TCAATCGTAGTCCTTTCGATATGT 57.613 37.500 0.00 0.00 42.22 2.29
525 526 7.309177 AGATCAATCGTAGTCCTTTCGATATG 58.691 38.462 0.00 0.00 42.22 1.78
526 527 7.362229 GGAGATCAATCGTAGTCCTTTCGATAT 60.362 40.741 0.00 0.00 42.22 1.63
527 528 6.072618 GGAGATCAATCGTAGTCCTTTCGATA 60.073 42.308 0.00 0.00 42.22 2.92
528 529 5.278561 GGAGATCAATCGTAGTCCTTTCGAT 60.279 44.000 0.00 0.00 44.37 3.59
529 530 4.036498 GGAGATCAATCGTAGTCCTTTCGA 59.964 45.833 0.00 0.00 37.96 3.71
530 531 4.036971 AGGAGATCAATCGTAGTCCTTTCG 59.963 45.833 0.00 0.00 29.80 3.46
531 532 5.523438 AGGAGATCAATCGTAGTCCTTTC 57.477 43.478 0.00 0.00 29.80 2.62
532 533 7.945664 AGTATAGGAGATCAATCGTAGTCCTTT 59.054 37.037 1.64 0.00 35.92 3.11
533 534 7.463431 AGTATAGGAGATCAATCGTAGTCCTT 58.537 38.462 1.64 0.00 35.92 3.36
534 535 7.023171 AGTATAGGAGATCAATCGTAGTCCT 57.977 40.000 0.00 0.00 38.07 3.85
535 536 7.175293 ACAAGTATAGGAGATCAATCGTAGTCC 59.825 40.741 0.00 0.00 0.00 3.85
536 537 8.018520 CACAAGTATAGGAGATCAATCGTAGTC 58.981 40.741 0.00 0.00 0.00 2.59
537 538 7.040340 CCACAAGTATAGGAGATCAATCGTAGT 60.040 40.741 0.00 0.00 0.00 2.73
538 539 7.309177 CCACAAGTATAGGAGATCAATCGTAG 58.691 42.308 0.00 0.00 0.00 3.51
539 540 6.208797 CCCACAAGTATAGGAGATCAATCGTA 59.791 42.308 0.00 0.00 0.00 3.43
540 541 5.011125 CCCACAAGTATAGGAGATCAATCGT 59.989 44.000 0.00 0.00 0.00 3.73
541 542 5.011125 ACCCACAAGTATAGGAGATCAATCG 59.989 44.000 0.00 0.00 0.00 3.34
542 543 6.042093 TGACCCACAAGTATAGGAGATCAATC 59.958 42.308 0.00 0.00 0.00 2.67
543 544 5.905331 TGACCCACAAGTATAGGAGATCAAT 59.095 40.000 0.00 0.00 0.00 2.57
544 545 5.277250 TGACCCACAAGTATAGGAGATCAA 58.723 41.667 0.00 0.00 0.00 2.57
545 546 4.878968 TGACCCACAAGTATAGGAGATCA 58.121 43.478 0.00 0.00 0.00 2.92
546 547 5.540337 TGATGACCCACAAGTATAGGAGATC 59.460 44.000 0.00 0.00 0.00 2.75
547 548 5.467738 TGATGACCCACAAGTATAGGAGAT 58.532 41.667 0.00 0.00 0.00 2.75
548 549 4.878968 TGATGACCCACAAGTATAGGAGA 58.121 43.478 0.00 0.00 0.00 3.71
549 550 5.815233 ATGATGACCCACAAGTATAGGAG 57.185 43.478 0.00 0.00 0.00 3.69
550 551 5.221441 CGAATGATGACCCACAAGTATAGGA 60.221 44.000 0.00 0.00 0.00 2.94
551 552 4.991056 CGAATGATGACCCACAAGTATAGG 59.009 45.833 0.00 0.00 0.00 2.57
552 553 5.601662 ACGAATGATGACCCACAAGTATAG 58.398 41.667 0.00 0.00 0.00 1.31
553 554 5.362717 AGACGAATGATGACCCACAAGTATA 59.637 40.000 0.00 0.00 0.00 1.47
554 555 4.162320 AGACGAATGATGACCCACAAGTAT 59.838 41.667 0.00 0.00 0.00 2.12
555 556 3.513912 AGACGAATGATGACCCACAAGTA 59.486 43.478 0.00 0.00 0.00 2.24
556 557 2.303022 AGACGAATGATGACCCACAAGT 59.697 45.455 0.00 0.00 0.00 3.16
557 558 2.674852 CAGACGAATGATGACCCACAAG 59.325 50.000 0.00 0.00 0.00 3.16
558 559 2.038426 ACAGACGAATGATGACCCACAA 59.962 45.455 0.00 0.00 0.00 3.33
559 560 1.623311 ACAGACGAATGATGACCCACA 59.377 47.619 0.00 0.00 0.00 4.17
560 561 2.002586 CACAGACGAATGATGACCCAC 58.997 52.381 0.00 0.00 0.00 4.61
561 562 1.675714 GCACAGACGAATGATGACCCA 60.676 52.381 0.00 0.00 0.00 4.51
562 563 1.009829 GCACAGACGAATGATGACCC 58.990 55.000 0.00 0.00 0.00 4.46
563 564 0.647410 CGCACAGACGAATGATGACC 59.353 55.000 0.00 0.00 34.06 4.02
564 565 0.025513 GCGCACAGACGAATGATGAC 59.974 55.000 0.30 0.00 34.06 3.06
565 566 0.108662 AGCGCACAGACGAATGATGA 60.109 50.000 11.47 0.00 34.06 2.92
566 567 1.559831 TAGCGCACAGACGAATGATG 58.440 50.000 11.47 0.00 34.06 3.07
567 568 2.293677 TTAGCGCACAGACGAATGAT 57.706 45.000 11.47 0.00 34.06 2.45
568 569 1.926510 CATTAGCGCACAGACGAATGA 59.073 47.619 11.47 0.00 32.17 2.57
569 570 1.004610 CCATTAGCGCACAGACGAATG 60.005 52.381 11.47 7.20 34.06 2.67
570 571 1.290203 CCATTAGCGCACAGACGAAT 58.710 50.000 11.47 0.00 34.06 3.34
584 585 1.065491 AGATGACCTGTTGCGCCATTA 60.065 47.619 4.18 0.00 0.00 1.90
590 591 2.688446 TCCTACTAGATGACCTGTTGCG 59.312 50.000 0.00 0.00 0.00 4.85
900 918 2.768527 CTGATAGACCTGGAGGCTGAAA 59.231 50.000 0.00 0.00 39.32 2.69
967 986 3.290948 TGTGGGGTGGATTTATAGTGC 57.709 47.619 0.00 0.00 0.00 4.40
1287 1306 0.456312 CGTCTTCTTTAGTCGCGCCT 60.456 55.000 0.00 0.00 0.00 5.52
1433 1452 1.759445 CTCCTCGATGTTGTCTGGGAT 59.241 52.381 0.00 0.00 0.00 3.85
1525 1544 1.819305 GCTTGGTCAACTGGTGGATGT 60.819 52.381 0.00 0.00 0.00 3.06
1528 1547 1.150536 GGCTTGGTCAACTGGTGGA 59.849 57.895 0.00 0.00 0.00 4.02
1625 1644 2.724690 CGAACCTCACAGTGTTAAGACG 59.275 50.000 0.00 0.00 0.00 4.18
1663 1682 8.197439 CCAGTATTGTCACTATTGTAGATCACA 58.803 37.037 0.00 0.00 34.51 3.58
1676 1695 1.064003 TGGCCACCAGTATTGTCACT 58.936 50.000 0.00 0.00 0.00 3.41
1705 1724 1.462283 CCACGAGAGAAGACGACGTTA 59.538 52.381 0.13 0.00 35.05 3.18
1928 1951 7.999679 TGATAAAACAAATAGAGCATGAAGGG 58.000 34.615 0.00 0.00 0.00 3.95
1932 1955 8.461222 CCAACTGATAAAACAAATAGAGCATGA 58.539 33.333 0.00 0.00 0.00 3.07
2035 2060 7.485913 CGTTTGATGCAATGCTAAGAGTAAAAT 59.514 33.333 6.82 0.00 0.00 1.82
2040 2066 4.002982 TCGTTTGATGCAATGCTAAGAGT 58.997 39.130 6.82 0.00 0.00 3.24
2063 2089 1.004745 AGGTAGCACTTCATGGTTGGG 59.995 52.381 0.00 0.00 40.36 4.12
2235 2265 1.678101 GCCATTATCCTGGTGCTCAAC 59.322 52.381 0.00 0.00 38.63 3.18
2307 2337 5.807909 TCTGATTGATGATGAAACTGGTCA 58.192 37.500 0.00 0.00 0.00 4.02
2330 2360 2.693864 CTCAGGGGTGGCCTGGAT 60.694 66.667 3.32 0.00 36.11 3.41
2371 2402 3.707102 GGGGTTCTCATAGTAGCTTGAGT 59.293 47.826 11.87 0.00 40.22 3.41
2372 2403 3.070302 GGGGGTTCTCATAGTAGCTTGAG 59.930 52.174 6.78 6.78 40.58 3.02
2400 2431 2.080693 GTCACAACATGCACCCGATAA 58.919 47.619 0.00 0.00 0.00 1.75
2428 2459 4.520111 GTGGCAAGTGCATTCATATATCCA 59.480 41.667 5.52 0.00 44.36 3.41
2453 2484 2.175202 GGTTATCACACCAATGCCCAA 58.825 47.619 0.00 0.00 36.73 4.12
2454 2485 1.618345 GGGTTATCACACCAATGCCCA 60.618 52.381 0.00 0.00 38.79 5.36
2516 2547 2.862541 CTCCTCATTGGGTTTGACACA 58.137 47.619 0.00 0.00 36.20 3.72
2530 2561 4.657814 AAATTCCACCTTTAGCTCCTCA 57.342 40.909 0.00 0.00 0.00 3.86
2584 2615 3.380479 TGCTAAGTGTGCGTAGAGTTT 57.620 42.857 0.00 0.00 0.00 2.66
2602 2633 6.254281 TCTTGTTCTAGGTAAAGCAAATGC 57.746 37.500 0.00 0.00 42.49 3.56
2741 2772 2.714250 TCCTACCACCAGTTTTCCACAT 59.286 45.455 0.00 0.00 0.00 3.21
2751 2782 7.201911 GGATAATTCCAAAAATCCTACCACCAG 60.202 40.741 0.00 0.00 42.12 4.00
2766 2797 5.070313 GCCAATTGCTTAGGGATAATTCCAA 59.930 40.000 0.00 0.00 39.49 3.53
2767 2798 4.588528 GCCAATTGCTTAGGGATAATTCCA 59.411 41.667 0.00 0.00 39.49 3.53
2792 2824 5.502153 ACTTGCTATCGGTCTAGTAACTG 57.498 43.478 0.00 0.00 0.00 3.16
2835 6543 1.139439 TAAGGGATGGCATGCTAGCA 58.861 50.000 21.85 21.85 35.83 3.49


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.