Multiple sequence alignment - TraesCS6D01G023800

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G023800 chr6D 100.000 2866 0 0 1 2866 9026616 9029481 0.000000e+00 5293
1 TraesCS6D01G023800 chr6D 79.635 1861 308 48 609 2426 9215800 9217632 0.000000e+00 1271
2 TraesCS6D01G023800 chr6D 81.625 1083 164 19 614 1688 9114113 9115168 0.000000e+00 865
3 TraesCS6D01G023800 chr6D 85.288 503 46 15 90 566 8539220 8538720 7.130000e-136 494
4 TraesCS6D01G023800 chr6D 83.858 508 49 15 90 566 8813159 8813664 1.210000e-123 453
5 TraesCS6D01G023800 chr6D 79.535 430 60 23 2166 2580 9115601 9116017 6.050000e-72 281
6 TraesCS6D01G023800 chr6D 94.615 130 7 0 2737 2866 463201447 463201576 4.840000e-48 202
7 TraesCS6D01G023800 chr6B 93.588 2433 116 17 193 2601 16547878 16545462 0.000000e+00 3592
8 TraesCS6D01G023800 chr6B 85.971 891 100 15 203 1075 90569544 90568661 0.000000e+00 929
9 TraesCS6D01G023800 chr6B 82.413 1086 166 19 616 1688 16995891 16996964 0.000000e+00 924
10 TraesCS6D01G023800 chr6B 86.951 797 76 16 1440 2219 90433974 90433189 0.000000e+00 870
11 TraesCS6D01G023800 chr6B 80.314 1082 176 20 614 1688 16628249 16629300 0.000000e+00 784
12 TraesCS6D01G023800 chr6B 80.314 1082 176 20 614 1688 16683427 16684478 0.000000e+00 784
13 TraesCS6D01G023800 chr6B 78.605 430 69 16 2166 2580 16641067 16641488 2.190000e-66 263
14 TraesCS6D01G023800 chr6B 78.605 430 69 16 2166 2580 16697484 16697905 2.190000e-66 263
15 TraesCS6D01G023800 chr6B 85.227 176 10 3 1 176 16547941 16548100 1.770000e-37 167
16 TraesCS6D01G023800 chr6B 87.402 127 15 1 49 174 90569666 90569540 8.280000e-31 145
17 TraesCS6D01G023800 chr6A 93.411 1806 92 15 234 2023 9519170 9520964 0.000000e+00 2651
18 TraesCS6D01G023800 chr6A 82.222 1080 177 10 614 1685 9946642 9947714 0.000000e+00 917
19 TraesCS6D01G023800 chr6A 81.852 1080 181 10 614 1685 9855933 9857005 0.000000e+00 894
20 TraesCS6D01G023800 chr6A 87.919 149 9 2 2023 2162 9521343 9521491 1.770000e-37 167
21 TraesCS6D01G023800 chr2D 97.674 129 3 0 2738 2866 38269749 38269877 3.720000e-54 222
22 TraesCS6D01G023800 chr7D 96.947 131 4 0 2736 2866 57720138 57720268 1.340000e-53 220
23 TraesCS6D01G023800 chr3D 96.124 129 5 0 2738 2866 595299363 595299235 8.050000e-51 211
24 TraesCS6D01G023800 chr3D 95.349 129 6 0 2738 2866 10212789 10212661 3.740000e-49 206
25 TraesCS6D01G023800 chr2B 96.124 129 5 0 2738 2866 751179246 751179118 8.050000e-51 211
26 TraesCS6D01G023800 chr5D 95.420 131 6 0 2736 2866 553539902 553540032 2.890000e-50 209
27 TraesCS6D01G023800 chr2A 95.349 129 6 0 2738 2866 745777930 745777802 3.740000e-49 206
28 TraesCS6D01G023800 chrUn 93.939 132 8 0 2735 2866 475286080 475285949 1.740000e-47 200


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G023800 chr6D 9026616 9029481 2865 False 5293 5293 100.0000 1 2866 1 chr6D.!!$F2 2865
1 TraesCS6D01G023800 chr6D 9215800 9217632 1832 False 1271 1271 79.6350 609 2426 1 chr6D.!!$F3 1817
2 TraesCS6D01G023800 chr6D 9114113 9116017 1904 False 573 865 80.5800 614 2580 2 chr6D.!!$F5 1966
3 TraesCS6D01G023800 chr6D 8538720 8539220 500 True 494 494 85.2880 90 566 1 chr6D.!!$R1 476
4 TraesCS6D01G023800 chr6D 8813159 8813664 505 False 453 453 83.8580 90 566 1 chr6D.!!$F1 476
5 TraesCS6D01G023800 chr6B 16545462 16547878 2416 True 3592 3592 93.5880 193 2601 1 chr6B.!!$R1 2408
6 TraesCS6D01G023800 chr6B 16995891 16996964 1073 False 924 924 82.4130 616 1688 1 chr6B.!!$F6 1072
7 TraesCS6D01G023800 chr6B 90433189 90433974 785 True 870 870 86.9510 1440 2219 1 chr6B.!!$R2 779
8 TraesCS6D01G023800 chr6B 16628249 16629300 1051 False 784 784 80.3140 614 1688 1 chr6B.!!$F2 1074
9 TraesCS6D01G023800 chr6B 16683427 16684478 1051 False 784 784 80.3140 614 1688 1 chr6B.!!$F4 1074
10 TraesCS6D01G023800 chr6B 90568661 90569666 1005 True 537 929 86.6865 49 1075 2 chr6B.!!$R3 1026
11 TraesCS6D01G023800 chr6A 9519170 9521491 2321 False 1409 2651 90.6650 234 2162 2 chr6A.!!$F3 1928
12 TraesCS6D01G023800 chr6A 9946642 9947714 1072 False 917 917 82.2220 614 1685 1 chr6A.!!$F2 1071
13 TraesCS6D01G023800 chr6A 9855933 9857005 1072 False 894 894 81.8520 614 1685 1 chr6A.!!$F1 1071

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
667 700 0.950116 GTCGACGGGGTGGTCTATAG 59.05 60.0 0.0 0.0 34.75 1.31 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2615 3102 0.179045 GCGTATGGTTCTGGCTCCAT 60.179 55.0 0.0 0.0 45.1 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 9.651913 ATTTAATTTTTATGATGTGCGGAAAGT 57.348 25.926 0.00 0.00 0.00 2.66
36 37 9.482627 TTTAATTTTTATGATGTGCGGAAAGTT 57.517 25.926 0.00 0.00 0.00 2.66
37 38 7.581011 AATTTTTATGATGTGCGGAAAGTTC 57.419 32.000 0.00 0.00 0.00 3.01
38 39 5.697473 TTTTATGATGTGCGGAAAGTTCA 57.303 34.783 0.00 0.00 0.00 3.18
39 40 5.895636 TTTATGATGTGCGGAAAGTTCAT 57.104 34.783 0.00 0.00 0.00 2.57
40 41 3.770263 ATGATGTGCGGAAAGTTCATG 57.230 42.857 0.00 0.00 0.00 3.07
41 42 2.503331 TGATGTGCGGAAAGTTCATGT 58.497 42.857 0.00 0.00 0.00 3.21
42 43 2.884012 TGATGTGCGGAAAGTTCATGTT 59.116 40.909 0.00 0.00 0.00 2.71
43 44 3.317711 TGATGTGCGGAAAGTTCATGTTT 59.682 39.130 0.00 0.00 0.00 2.83
44 45 3.347958 TGTGCGGAAAGTTCATGTTTC 57.652 42.857 0.00 0.00 33.82 2.78
45 46 2.034053 TGTGCGGAAAGTTCATGTTTCC 59.966 45.455 13.73 13.73 46.58 3.13
58 59 7.039270 AGTTCATGTTTCCAGTAAACCAAAAC 58.961 34.615 0.00 0.00 45.83 2.43
61 62 5.331876 TGTTTCCAGTAAACCAAAACCAG 57.668 39.130 0.00 0.00 45.83 4.00
76 77 6.014925 ACCAAAACCAGTAGAAAACAACAACT 60.015 34.615 0.00 0.00 0.00 3.16
77 78 7.177041 ACCAAAACCAGTAGAAAACAACAACTA 59.823 33.333 0.00 0.00 0.00 2.24
78 79 8.194769 CCAAAACCAGTAGAAAACAACAACTAT 58.805 33.333 0.00 0.00 0.00 2.12
79 80 9.233232 CAAAACCAGTAGAAAACAACAACTATC 57.767 33.333 0.00 0.00 0.00 2.08
86 87 9.436957 AGTAGAAAACAACAACTATCACTATGG 57.563 33.333 0.00 0.00 0.00 2.74
169 171 9.956720 GAATATAGCATGCAAGATACAAAAACT 57.043 29.630 21.98 0.00 0.00 2.66
174 176 7.934457 AGCATGCAAGATACAAAAACTATAGG 58.066 34.615 21.98 0.00 0.00 2.57
175 177 7.557719 AGCATGCAAGATACAAAAACTATAGGT 59.442 33.333 21.98 0.00 0.00 3.08
178 180 8.415192 TGCAAGATACAAAAACTATAGGTACG 57.585 34.615 4.43 0.00 0.00 3.67
270 285 1.556911 GTCTCCTTCTCTGCCCATGAA 59.443 52.381 0.00 0.00 0.00 2.57
275 290 3.147629 CCTTCTCTGCCCATGAATGATC 58.852 50.000 0.00 0.00 0.00 2.92
283 298 5.766670 TCTGCCCATGAATGATCTTCATAAC 59.233 40.000 15.54 10.72 35.76 1.89
304 321 5.679734 ACATGTGCTAAAACTGTGAAGAG 57.320 39.130 0.00 0.00 0.00 2.85
391 410 4.431416 TGTCCTTCCAGTTGTGTGTTAT 57.569 40.909 0.00 0.00 0.00 1.89
458 481 6.589523 GGCTTGCATGTTATGTTTGAATGTTA 59.410 34.615 1.14 0.00 0.00 2.41
459 482 7.117523 GGCTTGCATGTTATGTTTGAATGTTAA 59.882 33.333 1.14 0.00 0.00 2.01
460 483 7.951565 GCTTGCATGTTATGTTTGAATGTTAAC 59.048 33.333 0.00 0.00 0.00 2.01
461 484 9.195411 CTTGCATGTTATGTTTGAATGTTAACT 57.805 29.630 7.22 0.00 0.00 2.24
462 485 8.518151 TGCATGTTATGTTTGAATGTTAACTG 57.482 30.769 7.22 0.00 0.00 3.16
463 486 8.355913 TGCATGTTATGTTTGAATGTTAACTGA 58.644 29.630 7.22 0.00 0.00 3.41
464 487 9.357652 GCATGTTATGTTTGAATGTTAACTGAT 57.642 29.630 7.22 0.00 0.00 2.90
470 493 6.827641 TGTTTGAATGTTAACTGATACGAGC 58.172 36.000 7.22 0.00 0.00 5.03
471 494 6.425417 TGTTTGAATGTTAACTGATACGAGCA 59.575 34.615 7.22 0.66 0.00 4.26
473 496 6.403333 TGAATGTTAACTGATACGAGCAAC 57.597 37.500 7.22 0.00 0.00 4.17
475 498 4.163458 TGTTAACTGATACGAGCAACGA 57.837 40.909 7.22 0.00 45.77 3.85
480 513 3.845178 ACTGATACGAGCAACGAATCAA 58.155 40.909 10.05 0.00 45.77 2.57
524 557 8.263640 CCCTGGATATATAGAACCTCATTCAAG 58.736 40.741 0.00 0.00 40.09 3.02
571 604 1.399089 TCACGCAACATGCATGATCAG 59.601 47.619 32.75 20.99 40.91 2.90
591 624 6.339587 TCAGTTGGTTTTTCATTATGGGAC 57.660 37.500 0.00 0.00 0.00 4.46
667 700 0.950116 GTCGACGGGGTGGTCTATAG 59.050 60.000 0.00 0.00 34.75 1.31
902 941 1.549203 ACAGCTGGGCACAATTAAGG 58.451 50.000 19.93 0.00 0.00 2.69
962 1001 1.959985 CTAGCCTCCTCATCGTCACAT 59.040 52.381 0.00 0.00 0.00 3.21
1426 1469 1.852157 ATGAGGCCATGGTCAACGGT 61.852 55.000 20.74 0.00 0.00 4.83
1525 1568 4.671406 GCAAAAATGAGCGGGCAA 57.329 50.000 0.00 0.00 0.00 4.52
1542 1585 1.821216 CAACCGCCAGTCTACCAAAT 58.179 50.000 0.00 0.00 0.00 2.32
1559 1602 1.696063 AATGCAGGCACCATACATCC 58.304 50.000 0.00 0.00 0.00 3.51
1597 1640 1.166531 GGCCTCCAACCATGTATCGC 61.167 60.000 0.00 0.00 0.00 4.58
1598 1641 0.463654 GCCTCCAACCATGTATCGCA 60.464 55.000 0.00 0.00 0.00 5.10
1623 1666 2.263741 CGCAGCAGCAAGAGGGTTT 61.264 57.895 0.82 0.00 42.27 3.27
1636 1679 2.147150 GAGGGTTTGCTTGAGACAGTC 58.853 52.381 0.00 0.00 0.00 3.51
1693 1736 4.379174 CACAGTACTGGTGGCCAC 57.621 61.111 28.57 28.57 32.65 5.01
1728 1771 4.920640 TCGGCTTCTTTCCTAGTCATAG 57.079 45.455 0.00 0.00 0.00 2.23
1830 1901 4.102996 TGCCATGGCTAATAAGACTCATGA 59.897 41.667 35.53 8.25 42.51 3.07
1879 1950 3.056465 ACATTCGGTCTCAGTCTTTCTCC 60.056 47.826 0.00 0.00 0.00 3.71
1880 1951 1.546961 TCGGTCTCAGTCTTTCTCCC 58.453 55.000 0.00 0.00 0.00 4.30
1894 1965 3.593442 TTCTCCCTGAGCAAAGGAAAA 57.407 42.857 6.28 0.00 40.02 2.29
1981 2058 7.177041 TGGTTGAAACTTTTAGGTTGTACTTGT 59.823 33.333 0.00 0.00 0.00 3.16
1990 2067 9.893305 CTTTTAGGTTGTACTTGTTCTTTATGG 57.107 33.333 0.00 0.00 0.00 2.74
2073 2534 2.618241 GCATGAGCGATCCAACCATAAA 59.382 45.455 0.00 0.00 0.00 1.40
2078 2549 3.270877 AGCGATCCAACCATAAACACTC 58.729 45.455 0.00 0.00 0.00 3.51
2114 2585 2.353269 TGCACACCGCCTATAAAAATCG 59.647 45.455 0.00 0.00 41.33 3.34
2308 2793 4.494690 CGGTTTCATCATCAATCAAGTCCG 60.495 45.833 0.00 0.00 0.00 4.79
2320 2805 4.974438 AGTCCGAGGCCACCCCAA 62.974 66.667 5.01 0.00 35.39 4.12
2346 2833 3.066760 GGGCATTGTGTTTGAGCTATACC 59.933 47.826 0.00 0.00 0.00 2.73
2469 2956 2.248280 TGTGCACACGTAATCAAGGT 57.752 45.000 17.42 0.00 0.00 3.50
2482 2969 6.984474 ACGTAATCAAGGTGATATTGTACCTG 59.016 38.462 7.71 4.15 46.28 4.00
2493 2980 7.657761 GGTGATATTGTACCTGAATGAGTAAGG 59.342 40.741 0.00 0.00 37.11 2.69
2533 3020 0.756294 TTGAGAGGTGTCGGAAGCAA 59.244 50.000 0.00 0.00 0.00 3.91
2550 3037 1.330213 GCAACAACAACAAACATGGGC 59.670 47.619 0.00 0.00 0.00 5.36
2553 3040 1.202359 ACAACAACAAACATGGGCGAC 60.202 47.619 0.00 0.00 0.00 5.19
2601 3088 4.627015 TCCCCTCCACAATACTAAGCTAA 58.373 43.478 0.00 0.00 0.00 3.09
2602 3089 5.224441 TCCCCTCCACAATACTAAGCTAAT 58.776 41.667 0.00 0.00 0.00 1.73
2603 3090 5.071788 TCCCCTCCACAATACTAAGCTAATG 59.928 44.000 0.00 0.00 0.00 1.90
2604 3091 5.308825 CCCTCCACAATACTAAGCTAATGG 58.691 45.833 0.00 0.00 0.00 3.16
2605 3092 5.308825 CCTCCACAATACTAAGCTAATGGG 58.691 45.833 0.00 0.00 0.00 4.00
2606 3093 5.071788 CCTCCACAATACTAAGCTAATGGGA 59.928 44.000 0.00 0.00 0.00 4.37
2607 3094 6.174720 TCCACAATACTAAGCTAATGGGAG 57.825 41.667 0.00 0.00 0.00 4.30
2608 3095 4.757149 CCACAATACTAAGCTAATGGGAGC 59.243 45.833 0.00 0.00 43.19 4.70
2609 3096 5.368145 CACAATACTAAGCTAATGGGAGCA 58.632 41.667 0.00 0.00 45.43 4.26
2610 3097 5.237344 CACAATACTAAGCTAATGGGAGCAC 59.763 44.000 0.00 0.00 45.43 4.40
2611 3098 4.625607 ATACTAAGCTAATGGGAGCACC 57.374 45.455 0.00 0.00 45.43 5.01
2625 3112 3.806941 GCACCAATATGGAGCCAGA 57.193 52.632 7.47 0.00 46.41 3.86
2626 3113 2.057137 GCACCAATATGGAGCCAGAA 57.943 50.000 7.47 0.00 46.41 3.02
2627 3114 1.678101 GCACCAATATGGAGCCAGAAC 59.322 52.381 7.47 0.00 46.41 3.01
2628 3115 2.301346 CACCAATATGGAGCCAGAACC 58.699 52.381 2.85 0.00 40.96 3.62
2629 3116 1.922447 ACCAATATGGAGCCAGAACCA 59.078 47.619 2.85 0.00 40.96 3.67
2630 3117 2.515429 ACCAATATGGAGCCAGAACCAT 59.485 45.455 2.85 0.00 46.73 3.55
2631 3118 7.959899 GCACCAATATGGAGCCAGAACCATA 62.960 48.000 7.47 0.00 46.41 2.74
2634 3121 0.179045 ATGGAGCCAGAACCATACGC 60.179 55.000 0.00 0.00 43.89 4.42
2635 3122 1.523938 GGAGCCAGAACCATACGCC 60.524 63.158 0.00 0.00 0.00 5.68
2636 3123 1.220749 GAGCCAGAACCATACGCCA 59.779 57.895 0.00 0.00 0.00 5.69
2637 3124 0.179045 GAGCCAGAACCATACGCCAT 60.179 55.000 0.00 0.00 0.00 4.40
2638 3125 0.464373 AGCCAGAACCATACGCCATG 60.464 55.000 0.00 0.00 0.00 3.66
2639 3126 0.463654 GCCAGAACCATACGCCATGA 60.464 55.000 0.00 0.00 36.69 3.07
2640 3127 1.815408 GCCAGAACCATACGCCATGAT 60.815 52.381 0.00 0.00 36.69 2.45
2641 3128 1.875514 CCAGAACCATACGCCATGATG 59.124 52.381 0.00 0.00 36.69 3.07
2642 3129 1.875514 CAGAACCATACGCCATGATGG 59.124 52.381 7.21 7.21 46.88 3.51
2652 3139 2.203252 CATGATGGCCAGGGACCG 60.203 66.667 13.05 0.00 0.00 4.79
2653 3140 3.492353 ATGATGGCCAGGGACCGG 61.492 66.667 13.05 0.00 0.00 5.28
2655 3142 3.728373 GATGGCCAGGGACCGGTT 61.728 66.667 13.05 0.00 0.00 4.44
2656 3143 3.995506 GATGGCCAGGGACCGGTTG 62.996 68.421 13.05 2.39 0.00 3.77
2668 3155 3.159298 CCGGTTGGTCTGAATCCAG 57.841 57.895 0.00 0.00 41.74 3.86
2669 3156 0.324943 CCGGTTGGTCTGAATCCAGT 59.675 55.000 0.00 0.00 41.16 4.00
2670 3157 1.553248 CCGGTTGGTCTGAATCCAGTA 59.447 52.381 0.00 0.00 41.16 2.74
2671 3158 2.170607 CCGGTTGGTCTGAATCCAGTAT 59.829 50.000 0.00 0.00 41.16 2.12
2672 3159 3.198068 CGGTTGGTCTGAATCCAGTATG 58.802 50.000 0.00 0.00 41.16 2.39
2692 3179 8.197439 CAGTATGGGAAATTTTATGGAAACTCC 58.803 37.037 0.00 0.00 36.96 3.85
2702 3189 1.691196 TGGAAACTCCAAGTTGCTGG 58.309 50.000 0.00 0.00 45.00 4.85
2703 3190 1.064017 TGGAAACTCCAAGTTGCTGGT 60.064 47.619 0.00 0.00 45.00 4.00
2704 3191 2.173782 TGGAAACTCCAAGTTGCTGGTA 59.826 45.455 0.00 0.00 45.00 3.25
2705 3192 3.219281 GGAAACTCCAAGTTGCTGGTAA 58.781 45.455 0.00 0.00 38.66 2.85
2706 3193 3.253432 GGAAACTCCAAGTTGCTGGTAAG 59.747 47.826 0.00 0.00 38.66 2.34
2707 3194 3.857157 AACTCCAAGTTGCTGGTAAGA 57.143 42.857 0.00 0.00 37.00 2.10
2708 3195 4.373156 AACTCCAAGTTGCTGGTAAGAT 57.627 40.909 0.00 0.00 37.00 2.40
2709 3196 3.944087 ACTCCAAGTTGCTGGTAAGATC 58.056 45.455 0.00 0.00 37.74 2.75
2710 3197 3.327757 ACTCCAAGTTGCTGGTAAGATCA 59.672 43.478 0.00 0.00 37.74 2.92
2711 3198 4.202461 ACTCCAAGTTGCTGGTAAGATCAA 60.202 41.667 0.00 0.00 37.74 2.57
2712 3199 4.724399 TCCAAGTTGCTGGTAAGATCAAA 58.276 39.130 0.00 0.00 37.74 2.69
2713 3200 5.136828 TCCAAGTTGCTGGTAAGATCAAAA 58.863 37.500 0.00 0.00 37.74 2.44
2714 3201 5.774690 TCCAAGTTGCTGGTAAGATCAAAAT 59.225 36.000 0.00 0.00 37.74 1.82
2715 3202 6.071952 TCCAAGTTGCTGGTAAGATCAAAATC 60.072 38.462 0.00 0.00 37.74 2.17
2716 3203 6.071728 CCAAGTTGCTGGTAAGATCAAAATCT 60.072 38.462 0.00 0.00 44.37 2.40
2729 3216 6.685657 AGATCAAAATCTTTGTTTGGAGAGC 58.314 36.000 0.00 0.00 39.27 4.09
2730 3217 5.850557 TCAAAATCTTTGTTTGGAGAGCA 57.149 34.783 0.00 0.00 36.75 4.26
2731 3218 6.409524 TCAAAATCTTTGTTTGGAGAGCAT 57.590 33.333 0.00 0.00 36.75 3.79
2732 3219 6.819284 TCAAAATCTTTGTTTGGAGAGCATT 58.181 32.000 0.00 0.00 36.75 3.56
2733 3220 7.950512 TCAAAATCTTTGTTTGGAGAGCATTA 58.049 30.769 0.00 0.00 36.75 1.90
2734 3221 7.867403 TCAAAATCTTTGTTTGGAGAGCATTAC 59.133 33.333 0.00 0.00 36.75 1.89
2735 3222 6.899393 AATCTTTGTTTGGAGAGCATTACA 57.101 33.333 0.00 0.00 0.00 2.41
2736 3223 7.472334 AATCTTTGTTTGGAGAGCATTACAT 57.528 32.000 0.00 0.00 0.00 2.29
2737 3224 6.500684 TCTTTGTTTGGAGAGCATTACATC 57.499 37.500 0.00 0.00 0.00 3.06
2738 3225 6.003326 TCTTTGTTTGGAGAGCATTACATCA 58.997 36.000 0.00 0.00 0.00 3.07
2739 3226 5.627499 TTGTTTGGAGAGCATTACATCAC 57.373 39.130 0.00 0.00 0.00 3.06
2740 3227 4.910195 TGTTTGGAGAGCATTACATCACT 58.090 39.130 0.00 0.00 0.00 3.41
2741 3228 6.048732 TGTTTGGAGAGCATTACATCACTA 57.951 37.500 0.00 0.00 0.00 2.74
2742 3229 6.108687 TGTTTGGAGAGCATTACATCACTAG 58.891 40.000 0.00 0.00 0.00 2.57
2743 3230 5.939764 TTGGAGAGCATTACATCACTAGT 57.060 39.130 0.00 0.00 0.00 2.57
2744 3231 7.093509 TGTTTGGAGAGCATTACATCACTAGTA 60.094 37.037 0.00 0.00 0.00 1.82
2745 3232 6.641169 TGGAGAGCATTACATCACTAGTAG 57.359 41.667 0.00 0.00 0.00 2.57
2746 3233 6.365520 TGGAGAGCATTACATCACTAGTAGA 58.634 40.000 3.59 0.00 0.00 2.59
2747 3234 6.833933 TGGAGAGCATTACATCACTAGTAGAA 59.166 38.462 3.59 0.00 0.00 2.10
2748 3235 7.342026 TGGAGAGCATTACATCACTAGTAGAAA 59.658 37.037 3.59 0.00 0.00 2.52
2749 3236 8.198109 GGAGAGCATTACATCACTAGTAGAAAA 58.802 37.037 3.59 0.00 0.00 2.29
2750 3237 9.587772 GAGAGCATTACATCACTAGTAGAAAAA 57.412 33.333 3.59 0.00 0.00 1.94
2759 3246 9.686683 ACATCACTAGTAGAAAAATAGCCATTT 57.313 29.630 3.59 0.00 35.84 2.32
2760 3247 9.941664 CATCACTAGTAGAAAAATAGCCATTTG 57.058 33.333 3.59 0.00 34.53 2.32
2761 3248 9.686683 ATCACTAGTAGAAAAATAGCCATTTGT 57.313 29.630 3.59 0.00 34.53 2.83
2762 3249 9.162764 TCACTAGTAGAAAAATAGCCATTTGTC 57.837 33.333 3.59 0.00 38.28 3.18
2763 3250 8.398665 CACTAGTAGAAAAATAGCCATTTGTCC 58.601 37.037 3.59 0.00 38.63 4.02
2764 3251 6.775594 AGTAGAAAAATAGCCATTTGTCCC 57.224 37.500 4.37 0.00 38.63 4.46
2765 3252 4.718940 AGAAAAATAGCCATTTGTCCCG 57.281 40.909 4.37 0.00 38.63 5.14
2766 3253 3.447229 AGAAAAATAGCCATTTGTCCCGG 59.553 43.478 4.37 0.00 38.63 5.73
2767 3254 2.525105 AAATAGCCATTTGTCCCGGT 57.475 45.000 0.00 0.00 33.01 5.28
2768 3255 2.525105 AATAGCCATTTGTCCCGGTT 57.475 45.000 0.00 0.00 0.00 4.44
2769 3256 2.052782 ATAGCCATTTGTCCCGGTTC 57.947 50.000 0.00 0.00 0.00 3.62
2770 3257 0.693622 TAGCCATTTGTCCCGGTTCA 59.306 50.000 0.00 0.00 0.00 3.18
2771 3258 0.039618 AGCCATTTGTCCCGGTTCAT 59.960 50.000 0.00 0.00 0.00 2.57
2772 3259 1.283613 AGCCATTTGTCCCGGTTCATA 59.716 47.619 0.00 0.00 0.00 2.15
2773 3260 2.096248 GCCATTTGTCCCGGTTCATAA 58.904 47.619 0.00 0.00 0.00 1.90
2774 3261 2.099098 GCCATTTGTCCCGGTTCATAAG 59.901 50.000 0.00 0.00 0.00 1.73
2775 3262 2.687935 CCATTTGTCCCGGTTCATAAGG 59.312 50.000 0.00 0.00 0.00 2.69
2776 3263 1.828979 TTTGTCCCGGTTCATAAGGC 58.171 50.000 0.00 0.00 0.00 4.35
2777 3264 0.034863 TTGTCCCGGTTCATAAGGCC 60.035 55.000 0.00 0.00 0.00 5.19
2778 3265 1.153025 GTCCCGGTTCATAAGGCCC 60.153 63.158 0.00 0.00 0.00 5.80
2779 3266 1.616930 TCCCGGTTCATAAGGCCCA 60.617 57.895 0.00 0.00 0.00 5.36
2780 3267 0.991355 TCCCGGTTCATAAGGCCCAT 60.991 55.000 0.00 0.00 0.00 4.00
2781 3268 0.106217 CCCGGTTCATAAGGCCCATT 60.106 55.000 0.00 0.00 0.00 3.16
2782 3269 1.687996 CCCGGTTCATAAGGCCCATTT 60.688 52.381 0.00 0.00 0.00 2.32
2783 3270 1.408702 CCGGTTCATAAGGCCCATTTG 59.591 52.381 0.00 0.00 0.00 2.32
2784 3271 2.099405 CGGTTCATAAGGCCCATTTGT 58.901 47.619 0.00 0.00 0.00 2.83
2785 3272 2.099098 CGGTTCATAAGGCCCATTTGTC 59.901 50.000 0.00 0.00 0.00 3.18
2786 3273 2.430694 GGTTCATAAGGCCCATTTGTCC 59.569 50.000 0.00 0.00 0.00 4.02
2787 3274 2.430694 GTTCATAAGGCCCATTTGTCCC 59.569 50.000 0.00 0.00 0.00 4.46
2788 3275 1.032014 CATAAGGCCCATTTGTCCCG 58.968 55.000 0.00 0.00 0.00 5.14
2789 3276 0.106217 ATAAGGCCCATTTGTCCCGG 60.106 55.000 0.00 0.00 0.00 5.73
2790 3277 1.502527 TAAGGCCCATTTGTCCCGGT 61.503 55.000 0.00 0.00 0.00 5.28
2791 3278 2.283604 GGCCCATTTGTCCCGGTT 60.284 61.111 0.00 0.00 0.00 4.44
2792 3279 2.645192 GGCCCATTTGTCCCGGTTG 61.645 63.158 0.00 0.00 0.00 3.77
2793 3280 1.906333 GCCCATTTGTCCCGGTTGT 60.906 57.895 0.00 0.00 0.00 3.32
2794 3281 1.963679 CCCATTTGTCCCGGTTGTG 59.036 57.895 0.00 0.00 0.00 3.33
2795 3282 1.531739 CCCATTTGTCCCGGTTGTGG 61.532 60.000 0.00 0.00 0.00 4.17
2796 3283 0.538516 CCATTTGTCCCGGTTGTGGA 60.539 55.000 0.00 0.00 0.00 4.02
2797 3284 1.323412 CATTTGTCCCGGTTGTGGAA 58.677 50.000 0.00 0.00 32.59 3.53
2798 3285 1.000717 CATTTGTCCCGGTTGTGGAAC 60.001 52.381 0.00 0.00 32.59 3.62
2805 3292 2.833957 GGTTGTGGAACCGGGACT 59.166 61.111 6.32 0.00 42.47 3.85
2806 3293 2.060370 GGTTGTGGAACCGGGACTA 58.940 57.895 6.32 0.00 42.47 2.59
2807 3294 0.397564 GGTTGTGGAACCGGGACTAA 59.602 55.000 6.32 0.00 42.47 2.24
2808 3295 1.202794 GGTTGTGGAACCGGGACTAAA 60.203 52.381 6.32 0.00 42.47 1.85
2809 3296 2.148768 GTTGTGGAACCGGGACTAAAG 58.851 52.381 6.32 0.00 34.36 1.85
2810 3297 0.688487 TGTGGAACCGGGACTAAAGG 59.312 55.000 6.32 0.00 34.36 3.11
2811 3298 0.035725 GTGGAACCGGGACTAAAGGG 60.036 60.000 6.32 0.00 0.00 3.95
2812 3299 0.474273 TGGAACCGGGACTAAAGGGT 60.474 55.000 6.32 0.00 0.00 4.34
2813 3300 0.251354 GGAACCGGGACTAAAGGGTC 59.749 60.000 6.32 0.00 40.88 4.46
2814 3301 0.108472 GAACCGGGACTAAAGGGTCG 60.108 60.000 6.32 0.00 37.12 4.79
2815 3302 0.833409 AACCGGGACTAAAGGGTCGT 60.833 55.000 6.32 0.00 37.12 4.34
2816 3303 0.833409 ACCGGGACTAAAGGGTCGTT 60.833 55.000 6.32 0.00 37.12 3.85
2817 3304 1.185315 CCGGGACTAAAGGGTCGTTA 58.815 55.000 0.00 0.00 37.12 3.18
2818 3305 1.134995 CCGGGACTAAAGGGTCGTTAC 60.135 57.143 0.00 0.00 37.12 2.50
2819 3306 1.821136 CGGGACTAAAGGGTCGTTACT 59.179 52.381 0.00 0.00 37.12 2.24
2820 3307 3.016736 CGGGACTAAAGGGTCGTTACTA 58.983 50.000 0.00 0.00 37.12 1.82
2821 3308 3.443681 CGGGACTAAAGGGTCGTTACTAA 59.556 47.826 0.00 0.00 37.12 2.24
2822 3309 4.098501 CGGGACTAAAGGGTCGTTACTAAT 59.901 45.833 0.00 0.00 37.12 1.73
2823 3310 5.354767 GGGACTAAAGGGTCGTTACTAATG 58.645 45.833 0.00 0.00 37.12 1.90
2824 3311 4.807834 GGACTAAAGGGTCGTTACTAATGC 59.192 45.833 0.00 0.00 37.12 3.56
2825 3312 4.763073 ACTAAAGGGTCGTTACTAATGCC 58.237 43.478 0.00 0.00 0.00 4.40
2826 3313 2.704464 AAGGGTCGTTACTAATGCCC 57.296 50.000 10.40 10.40 35.35 5.36
2827 3314 1.875488 AGGGTCGTTACTAATGCCCT 58.125 50.000 13.37 13.37 38.46 5.19
2828 3315 1.485066 AGGGTCGTTACTAATGCCCTG 59.515 52.381 16.38 0.00 40.36 4.45
2829 3316 1.208776 GGGTCGTTACTAATGCCCTGT 59.791 52.381 10.85 0.00 33.56 4.00
2830 3317 2.431782 GGGTCGTTACTAATGCCCTGTA 59.568 50.000 10.85 0.00 33.56 2.74
2831 3318 3.451526 GGTCGTTACTAATGCCCTGTAC 58.548 50.000 0.00 0.00 0.00 2.90
2832 3319 3.451526 GTCGTTACTAATGCCCTGTACC 58.548 50.000 0.00 0.00 0.00 3.34
2833 3320 3.131755 GTCGTTACTAATGCCCTGTACCT 59.868 47.826 0.00 0.00 0.00 3.08
2834 3321 3.770933 TCGTTACTAATGCCCTGTACCTT 59.229 43.478 0.00 0.00 0.00 3.50
2835 3322 4.223477 TCGTTACTAATGCCCTGTACCTTT 59.777 41.667 0.00 0.00 0.00 3.11
2836 3323 5.421693 TCGTTACTAATGCCCTGTACCTTTA 59.578 40.000 0.00 0.00 0.00 1.85
2837 3324 5.751990 CGTTACTAATGCCCTGTACCTTTAG 59.248 44.000 0.00 0.00 0.00 1.85
2838 3325 6.628844 CGTTACTAATGCCCTGTACCTTTAGT 60.629 42.308 10.69 10.69 36.50 2.24
2839 3326 5.354842 ACTAATGCCCTGTACCTTTAGTC 57.645 43.478 0.00 0.00 30.65 2.59
2840 3327 3.646736 AATGCCCTGTACCTTTAGTCC 57.353 47.619 0.00 0.00 0.00 3.85
2841 3328 1.282382 TGCCCTGTACCTTTAGTCCC 58.718 55.000 0.00 0.00 0.00 4.46
2842 3329 0.177373 GCCCTGTACCTTTAGTCCCG 59.823 60.000 0.00 0.00 0.00 5.14
2843 3330 0.828677 CCCTGTACCTTTAGTCCCGG 59.171 60.000 0.00 0.00 0.00 5.73
2844 3331 1.565067 CCTGTACCTTTAGTCCCGGT 58.435 55.000 0.00 0.00 34.86 5.28
2845 3332 1.904537 CCTGTACCTTTAGTCCCGGTT 59.095 52.381 0.00 0.00 32.36 4.44
2846 3333 2.303890 CCTGTACCTTTAGTCCCGGTTT 59.696 50.000 0.00 0.00 32.36 3.27
2847 3334 3.244665 CCTGTACCTTTAGTCCCGGTTTT 60.245 47.826 0.00 0.00 32.36 2.43
2848 3335 4.392047 CTGTACCTTTAGTCCCGGTTTTT 58.608 43.478 0.00 0.00 32.36 1.94
2849 3336 5.512921 CCTGTACCTTTAGTCCCGGTTTTTA 60.513 44.000 0.00 0.00 32.36 1.52
2850 3337 6.125589 TGTACCTTTAGTCCCGGTTTTTAT 57.874 37.500 0.00 0.00 32.36 1.40
2851 3338 7.251321 TGTACCTTTAGTCCCGGTTTTTATA 57.749 36.000 0.00 0.00 32.36 0.98
2852 3339 7.102993 TGTACCTTTAGTCCCGGTTTTTATAC 58.897 38.462 0.00 0.00 32.36 1.47
2853 3340 5.178061 ACCTTTAGTCCCGGTTTTTATACG 58.822 41.667 0.00 0.00 0.00 3.06
2854 3341 5.046663 ACCTTTAGTCCCGGTTTTTATACGA 60.047 40.000 0.00 0.00 0.00 3.43
2855 3342 5.874261 CCTTTAGTCCCGGTTTTTATACGAA 59.126 40.000 0.00 0.00 0.00 3.85
2856 3343 6.183360 CCTTTAGTCCCGGTTTTTATACGAAC 60.183 42.308 0.00 0.00 0.00 3.95
2857 3344 3.599343 AGTCCCGGTTTTTATACGAACC 58.401 45.455 0.00 6.43 41.47 3.62
2863 3350 3.333804 GGTTTTTATACGAACCGGGACA 58.666 45.455 6.32 0.00 36.31 4.02
2864 3351 3.371898 GGTTTTTATACGAACCGGGACAG 59.628 47.826 6.32 0.00 36.31 3.51
2865 3352 4.244862 GTTTTTATACGAACCGGGACAGA 58.755 43.478 6.32 0.00 0.00 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 9.651913 ACTTTCCGCACATCATAAAAATTAAAT 57.348 25.926 0.00 0.00 0.00 1.40
10 11 9.482627 AACTTTCCGCACATCATAAAAATTAAA 57.517 25.926 0.00 0.00 0.00 1.52
11 12 9.134734 GAACTTTCCGCACATCATAAAAATTAA 57.865 29.630 0.00 0.00 0.00 1.40
12 13 8.300286 TGAACTTTCCGCACATCATAAAAATTA 58.700 29.630 0.00 0.00 0.00 1.40
13 14 7.151308 TGAACTTTCCGCACATCATAAAAATT 58.849 30.769 0.00 0.00 0.00 1.82
14 15 6.686630 TGAACTTTCCGCACATCATAAAAAT 58.313 32.000 0.00 0.00 0.00 1.82
15 16 6.078202 TGAACTTTCCGCACATCATAAAAA 57.922 33.333 0.00 0.00 0.00 1.94
16 17 5.697473 TGAACTTTCCGCACATCATAAAA 57.303 34.783 0.00 0.00 0.00 1.52
17 18 5.182950 ACATGAACTTTCCGCACATCATAAA 59.817 36.000 0.00 0.00 0.00 1.40
18 19 4.699735 ACATGAACTTTCCGCACATCATAA 59.300 37.500 0.00 0.00 0.00 1.90
19 20 4.260985 ACATGAACTTTCCGCACATCATA 58.739 39.130 0.00 0.00 0.00 2.15
20 21 3.084039 ACATGAACTTTCCGCACATCAT 58.916 40.909 0.00 0.00 0.00 2.45
21 22 2.503331 ACATGAACTTTCCGCACATCA 58.497 42.857 0.00 0.00 0.00 3.07
22 23 3.559238 AACATGAACTTTCCGCACATC 57.441 42.857 0.00 0.00 0.00 3.06
23 24 3.305335 GGAAACATGAACTTTCCGCACAT 60.305 43.478 9.76 0.00 37.89 3.21
24 25 2.034053 GGAAACATGAACTTTCCGCACA 59.966 45.455 9.76 0.00 37.89 4.57
25 26 2.034053 TGGAAACATGAACTTTCCGCAC 59.966 45.455 17.05 0.39 46.81 5.34
26 27 2.293122 CTGGAAACATGAACTTTCCGCA 59.707 45.455 17.05 4.74 46.81 5.69
27 28 2.293399 ACTGGAAACATGAACTTTCCGC 59.707 45.455 17.05 1.20 46.81 5.54
28 29 5.682943 TTACTGGAAACATGAACTTTCCG 57.317 39.130 17.05 14.49 46.81 4.30
40 41 5.333299 ACTGGTTTTGGTTTACTGGAAAC 57.667 39.130 6.96 6.96 45.80 2.78
41 42 6.424883 TCTACTGGTTTTGGTTTACTGGAAA 58.575 36.000 0.00 0.00 0.00 3.13
42 43 6.003859 TCTACTGGTTTTGGTTTACTGGAA 57.996 37.500 0.00 0.00 0.00 3.53
43 44 5.633655 TCTACTGGTTTTGGTTTACTGGA 57.366 39.130 0.00 0.00 0.00 3.86
44 45 6.702716 TTTCTACTGGTTTTGGTTTACTGG 57.297 37.500 0.00 0.00 0.00 4.00
45 46 7.540299 TGTTTTCTACTGGTTTTGGTTTACTG 58.460 34.615 0.00 0.00 0.00 2.74
46 47 7.706100 TGTTTTCTACTGGTTTTGGTTTACT 57.294 32.000 0.00 0.00 0.00 2.24
47 48 7.813627 TGTTGTTTTCTACTGGTTTTGGTTTAC 59.186 33.333 0.00 0.00 0.00 2.01
58 59 7.730364 AGTGATAGTTGTTGTTTTCTACTGG 57.270 36.000 0.00 0.00 0.00 4.00
61 62 9.216117 ACCATAGTGATAGTTGTTGTTTTCTAC 57.784 33.333 0.00 0.00 0.00 2.59
138 140 9.723601 TTGTATCTTGCATGCTATATTCATGTA 57.276 29.630 20.33 10.24 42.34 2.29
169 171 7.834181 GGGGGATACATACTAAACGTACCTATA 59.166 40.741 0.00 0.00 39.74 1.31
270 285 9.182214 AGTTTTAGCACATGTTATGAAGATCAT 57.818 29.630 0.00 0.00 40.72 2.45
275 290 7.584108 TCACAGTTTTAGCACATGTTATGAAG 58.416 34.615 0.00 0.00 0.00 3.02
283 298 4.214971 AGCTCTTCACAGTTTTAGCACATG 59.785 41.667 0.00 0.00 32.42 3.21
304 321 3.208594 TGATCTAACCATGTGCATGAGC 58.791 45.455 13.21 0.00 41.20 4.26
432 451 4.870123 TTCAAACATAACATGCAAGCCT 57.130 36.364 0.00 0.00 0.00 4.58
458 481 3.845178 TGATTCGTTGCTCGTATCAGTT 58.155 40.909 15.33 0.00 45.98 3.16
459 482 3.503827 TGATTCGTTGCTCGTATCAGT 57.496 42.857 15.33 0.00 45.98 3.41
462 485 2.850060 TCGTTGATTCGTTGCTCGTATC 59.150 45.455 11.82 11.82 43.33 2.24
463 486 2.852413 CTCGTTGATTCGTTGCTCGTAT 59.148 45.455 2.39 0.00 40.80 3.06
464 487 2.247637 CTCGTTGATTCGTTGCTCGTA 58.752 47.619 2.39 0.00 40.80 3.43
466 489 0.246912 GCTCGTTGATTCGTTGCTCG 60.247 55.000 0.00 0.00 41.41 5.03
467 490 0.790207 TGCTCGTTGATTCGTTGCTC 59.210 50.000 0.00 0.00 34.71 4.26
468 491 1.225855 TTGCTCGTTGATTCGTTGCT 58.774 45.000 0.00 0.00 34.71 3.91
470 493 3.454042 TCATTGCTCGTTGATTCGTTG 57.546 42.857 0.00 0.00 0.00 4.10
471 494 4.870426 ACTATCATTGCTCGTTGATTCGTT 59.130 37.500 0.00 0.00 34.52 3.85
473 496 4.504097 TGACTATCATTGCTCGTTGATTCG 59.496 41.667 0.00 0.00 34.52 3.34
474 497 5.973651 TGACTATCATTGCTCGTTGATTC 57.026 39.130 0.00 0.00 34.52 2.52
475 498 5.065218 GGTTGACTATCATTGCTCGTTGATT 59.935 40.000 0.00 0.00 34.52 2.57
480 513 2.501723 AGGGTTGACTATCATTGCTCGT 59.498 45.455 0.00 0.00 0.00 4.18
571 604 7.977789 AATTGTCCCATAATGAAAAACCAAC 57.022 32.000 0.00 0.00 0.00 3.77
902 941 2.421399 GGCTGAATTGGAGGCAGGC 61.421 63.158 0.00 0.00 45.73 4.85
914 953 2.459644 CCAATGGAGGATTTGGCTGAA 58.540 47.619 0.00 0.00 36.28 3.02
962 1001 5.778750 GCAGGGTAGATTTATAGTGGAGGTA 59.221 44.000 0.00 0.00 0.00 3.08
1162 1205 2.326222 CTTGGCGTTGCACAAGGTA 58.674 52.632 6.85 0.00 40.20 3.08
1525 1568 0.676782 GCATTTGGTAGACTGGCGGT 60.677 55.000 0.00 0.00 0.00 5.68
1542 1585 1.227102 GGGATGTATGGTGCCTGCA 59.773 57.895 0.00 0.00 0.00 4.41
1559 1602 1.521457 CCATGTCCATGTCGTCGGG 60.521 63.158 6.53 0.00 37.11 5.14
1623 1666 0.681733 GGACCTGACTGTCTCAAGCA 59.318 55.000 9.51 0.00 35.54 3.91
1693 1736 1.226660 GCCGAAATTGGTGCCATCG 60.227 57.895 5.91 5.91 0.00 3.84
1728 1771 5.888982 TCCTCTCCCAACTTACATATTCC 57.111 43.478 0.00 0.00 0.00 3.01
1740 1783 4.271807 ACATGTAGAGATCCTCTCCCAA 57.728 45.455 0.00 0.00 44.42 4.12
1830 1901 6.951778 TCATCTTATTCATGATGCCATCCATT 59.048 34.615 1.49 0.00 39.69 3.16
1879 1950 8.839343 ACAAAAATAAATTTTCCTTTGCTCAGG 58.161 29.630 13.93 0.00 39.20 3.86
1981 2058 6.577103 TGACAAAACATGTTGCCATAAAGAA 58.423 32.000 12.82 0.00 44.12 2.52
1990 2067 4.984161 AGTATGCTTGACAAAACATGTTGC 59.016 37.500 12.82 9.74 44.12 4.17
2073 2534 3.276857 CATCCTGCTATGCAAAGAGTGT 58.723 45.455 0.00 0.00 38.41 3.55
2251 2724 3.118847 TGAAACTTGCCAAAGATGTTGCA 60.119 39.130 0.00 0.00 36.84 4.08
2308 2793 2.356667 CCTCTTTGGGGTGGCCTC 59.643 66.667 3.32 0.00 0.00 4.70
2320 2805 1.615392 GCTCAAACACAATGCCCTCTT 59.385 47.619 0.00 0.00 0.00 2.85
2346 2833 2.093816 GGGGGTTCTCGTAGTAGTTTGG 60.094 54.545 0.00 0.00 0.00 3.28
2469 2956 8.319057 ACCTTACTCATTCAGGTACAATATCA 57.681 34.615 0.00 0.00 39.28 2.15
2482 2969 6.828785 ACCATTGTGGAATACCTTACTCATTC 59.171 38.462 2.45 0.00 40.96 2.67
2493 2980 5.414454 TCAAGCAAGTACCATTGTGGAATAC 59.586 40.000 2.45 0.00 40.96 1.89
2533 3020 1.107114 TCGCCCATGTTTGTTGTTGT 58.893 45.000 0.00 0.00 0.00 3.32
2550 3037 2.094659 CAGCAGGTGCCTAACGTCG 61.095 63.158 0.00 0.00 43.38 5.12
2553 3040 0.320771 AGTTCAGCAGGTGCCTAACG 60.321 55.000 0.00 0.00 43.38 3.18
2601 3088 2.965671 CTCCATATTGGTGCTCCCAT 57.034 50.000 1.59 0.00 44.74 4.00
2608 3095 2.301346 GGTTCTGGCTCCATATTGGTG 58.699 52.381 0.00 0.00 39.03 4.17
2609 3096 1.922447 TGGTTCTGGCTCCATATTGGT 59.078 47.619 0.00 0.00 39.03 3.67
2610 3097 2.734755 TGGTTCTGGCTCCATATTGG 57.265 50.000 0.00 0.00 39.43 3.16
2611 3098 3.748048 CGTATGGTTCTGGCTCCATATTG 59.252 47.826 7.09 1.27 44.86 1.90
2612 3099 3.807209 GCGTATGGTTCTGGCTCCATATT 60.807 47.826 7.09 0.00 44.86 1.28
2613 3100 2.289694 GCGTATGGTTCTGGCTCCATAT 60.290 50.000 7.09 0.00 44.86 1.78
2614 3101 1.070134 GCGTATGGTTCTGGCTCCATA 59.930 52.381 0.00 0.00 43.22 2.74
2615 3102 0.179045 GCGTATGGTTCTGGCTCCAT 60.179 55.000 0.00 0.00 45.10 3.41
2616 3103 1.220749 GCGTATGGTTCTGGCTCCA 59.779 57.895 0.00 0.00 38.14 3.86
2617 3104 1.523938 GGCGTATGGTTCTGGCTCC 60.524 63.158 0.00 0.00 0.00 4.70
2618 3105 0.179045 ATGGCGTATGGTTCTGGCTC 60.179 55.000 0.00 0.00 0.00 4.70
2619 3106 0.464373 CATGGCGTATGGTTCTGGCT 60.464 55.000 0.00 0.00 32.95 4.75
2620 3107 0.463654 TCATGGCGTATGGTTCTGGC 60.464 55.000 0.00 0.00 37.39 4.85
2621 3108 1.875514 CATCATGGCGTATGGTTCTGG 59.124 52.381 0.00 0.00 37.39 3.86
2622 3109 1.875514 CCATCATGGCGTATGGTTCTG 59.124 52.381 0.00 0.00 38.28 3.02
2623 3110 2.260844 CCATCATGGCGTATGGTTCT 57.739 50.000 0.00 0.00 38.28 3.01
2634 3121 2.196776 GGTCCCTGGCCATCATGG 59.803 66.667 5.51 3.19 41.55 3.66
2635 3122 2.203252 CGGTCCCTGGCCATCATG 60.203 66.667 5.51 0.00 0.00 3.07
2636 3123 3.492353 CCGGTCCCTGGCCATCAT 61.492 66.667 5.51 0.00 0.00 2.45
2638 3125 3.728373 AACCGGTCCCTGGCCATC 61.728 66.667 8.04 0.00 0.00 3.51
2639 3126 4.047125 CAACCGGTCCCTGGCCAT 62.047 66.667 8.04 0.00 0.00 4.40
2650 3137 0.324943 ACTGGATTCAGACCAACCGG 59.675 55.000 8.39 0.00 43.49 5.28
2651 3138 3.198068 CATACTGGATTCAGACCAACCG 58.802 50.000 8.39 0.00 43.49 4.44
2652 3139 3.545703 CCATACTGGATTCAGACCAACC 58.454 50.000 8.39 0.00 40.96 3.77
2653 3140 3.199946 TCCCATACTGGATTCAGACCAAC 59.800 47.826 8.39 0.00 40.96 3.77
2654 3141 3.459828 TCCCATACTGGATTCAGACCAA 58.540 45.455 8.39 0.00 40.96 3.67
2655 3142 3.129262 TCCCATACTGGATTCAGACCA 57.871 47.619 8.39 0.00 40.96 4.02
2656 3143 4.503714 TTTCCCATACTGGATTCAGACC 57.496 45.455 8.39 0.00 40.96 3.85
2657 3144 7.410120 AAAATTTCCCATACTGGATTCAGAC 57.590 36.000 8.39 0.00 40.96 3.51
2658 3145 9.135189 CATAAAATTTCCCATACTGGATTCAGA 57.865 33.333 8.39 0.00 40.96 3.27
2659 3146 8.362639 CCATAAAATTTCCCATACTGGATTCAG 58.637 37.037 0.00 0.00 40.96 3.02
2660 3147 8.064389 TCCATAAAATTTCCCATACTGGATTCA 58.936 33.333 0.00 0.00 40.96 2.57
2661 3148 8.477419 TCCATAAAATTTCCCATACTGGATTC 57.523 34.615 0.00 0.00 40.96 2.52
2662 3149 8.852671 TTCCATAAAATTTCCCATACTGGATT 57.147 30.769 0.00 0.00 40.96 3.01
2663 3150 8.704668 GTTTCCATAAAATTTCCCATACTGGAT 58.295 33.333 0.00 0.00 40.96 3.41
2664 3151 7.898636 AGTTTCCATAAAATTTCCCATACTGGA 59.101 33.333 0.00 0.00 40.96 3.86
2665 3152 8.078060 AGTTTCCATAAAATTTCCCATACTGG 57.922 34.615 0.00 0.00 37.25 4.00
2666 3153 8.197439 GGAGTTTCCATAAAATTTCCCATACTG 58.803 37.037 0.00 0.00 36.28 2.74
2667 3154 7.898636 TGGAGTTTCCATAAAATTTCCCATACT 59.101 33.333 0.00 0.00 42.67 2.12
2668 3155 8.073467 TGGAGTTTCCATAAAATTTCCCATAC 57.927 34.615 0.00 0.00 42.67 2.39
2683 3170 1.064017 ACCAGCAACTTGGAGTTTCCA 60.064 47.619 0.00 0.00 46.61 3.53
2684 3171 1.692411 ACCAGCAACTTGGAGTTTCC 58.308 50.000 0.00 0.00 40.87 3.13
2685 3172 4.134563 TCTTACCAGCAACTTGGAGTTTC 58.865 43.478 0.00 0.00 40.87 2.78
2686 3173 4.164843 TCTTACCAGCAACTTGGAGTTT 57.835 40.909 0.00 0.00 40.87 2.66
2687 3174 3.857157 TCTTACCAGCAACTTGGAGTT 57.143 42.857 0.00 0.00 40.87 3.01
2688 3175 3.327757 TGATCTTACCAGCAACTTGGAGT 59.672 43.478 0.00 0.00 40.87 3.85
2689 3176 3.942829 TGATCTTACCAGCAACTTGGAG 58.057 45.455 0.00 0.00 40.87 3.86
2690 3177 4.365514 TTGATCTTACCAGCAACTTGGA 57.634 40.909 0.00 0.00 40.87 3.53
2691 3178 5.452078 TTTTGATCTTACCAGCAACTTGG 57.548 39.130 0.00 0.00 44.09 3.61
2692 3179 6.917533 AGATTTTGATCTTACCAGCAACTTG 58.082 36.000 0.00 0.00 0.00 3.16
2693 3180 7.530426 AAGATTTTGATCTTACCAGCAACTT 57.470 32.000 0.04 0.00 38.97 2.66
2694 3181 7.014615 ACAAAGATTTTGATCTTACCAGCAACT 59.985 33.333 8.41 0.00 39.77 3.16
2695 3182 7.147976 ACAAAGATTTTGATCTTACCAGCAAC 58.852 34.615 8.41 0.00 39.77 4.17
2696 3183 7.288810 ACAAAGATTTTGATCTTACCAGCAA 57.711 32.000 8.41 0.00 39.77 3.91
2697 3184 6.899393 ACAAAGATTTTGATCTTACCAGCA 57.101 33.333 8.41 0.00 39.77 4.41
2698 3185 7.116805 CCAAACAAAGATTTTGATCTTACCAGC 59.883 37.037 8.41 0.00 39.77 4.85
2699 3186 8.359642 TCCAAACAAAGATTTTGATCTTACCAG 58.640 33.333 8.41 0.00 39.77 4.00
2700 3187 8.243961 TCCAAACAAAGATTTTGATCTTACCA 57.756 30.769 8.41 0.00 39.77 3.25
2701 3188 8.576442 TCTCCAAACAAAGATTTTGATCTTACC 58.424 33.333 8.41 0.00 39.77 2.85
2702 3189 9.617975 CTCTCCAAACAAAGATTTTGATCTTAC 57.382 33.333 8.41 0.00 39.77 2.34
2703 3190 8.299570 GCTCTCCAAACAAAGATTTTGATCTTA 58.700 33.333 8.41 0.00 39.77 2.10
2704 3191 7.150640 GCTCTCCAAACAAAGATTTTGATCTT 58.849 34.615 8.41 0.00 42.25 2.40
2705 3192 6.266103 TGCTCTCCAAACAAAGATTTTGATCT 59.734 34.615 8.41 0.00 36.24 2.75
2706 3193 6.449698 TGCTCTCCAAACAAAGATTTTGATC 58.550 36.000 8.41 0.00 36.24 2.92
2707 3194 6.409524 TGCTCTCCAAACAAAGATTTTGAT 57.590 33.333 8.41 0.00 36.24 2.57
2708 3195 5.850557 TGCTCTCCAAACAAAGATTTTGA 57.149 34.783 8.41 0.00 36.24 2.69
2709 3196 7.652909 TGTAATGCTCTCCAAACAAAGATTTTG 59.347 33.333 0.28 0.28 34.31 2.44
2710 3197 7.725251 TGTAATGCTCTCCAAACAAAGATTTT 58.275 30.769 0.00 0.00 0.00 1.82
2711 3198 7.288810 TGTAATGCTCTCCAAACAAAGATTT 57.711 32.000 0.00 0.00 0.00 2.17
2712 3199 6.899393 TGTAATGCTCTCCAAACAAAGATT 57.101 33.333 0.00 0.00 0.00 2.40
2713 3200 6.660521 TGATGTAATGCTCTCCAAACAAAGAT 59.339 34.615 0.00 0.00 30.29 2.40
2714 3201 6.003326 TGATGTAATGCTCTCCAAACAAAGA 58.997 36.000 0.00 0.00 30.29 2.52
2715 3202 6.072286 AGTGATGTAATGCTCTCCAAACAAAG 60.072 38.462 0.00 0.00 30.29 2.77
2716 3203 5.769662 AGTGATGTAATGCTCTCCAAACAAA 59.230 36.000 0.00 0.00 30.29 2.83
2717 3204 5.316167 AGTGATGTAATGCTCTCCAAACAA 58.684 37.500 0.00 0.00 30.29 2.83
2718 3205 4.910195 AGTGATGTAATGCTCTCCAAACA 58.090 39.130 0.00 0.00 0.00 2.83
2719 3206 6.109359 ACTAGTGATGTAATGCTCTCCAAAC 58.891 40.000 0.00 0.00 0.00 2.93
2720 3207 6.299805 ACTAGTGATGTAATGCTCTCCAAA 57.700 37.500 0.00 0.00 0.00 3.28
2721 3208 5.939764 ACTAGTGATGTAATGCTCTCCAA 57.060 39.130 0.00 0.00 0.00 3.53
2722 3209 6.365520 TCTACTAGTGATGTAATGCTCTCCA 58.634 40.000 5.39 0.00 0.00 3.86
2723 3210 6.885952 TCTACTAGTGATGTAATGCTCTCC 57.114 41.667 5.39 0.00 0.00 3.71
2724 3211 9.587772 TTTTTCTACTAGTGATGTAATGCTCTC 57.412 33.333 5.39 0.00 0.00 3.20
2733 3220 9.686683 AAATGGCTATTTTTCTACTAGTGATGT 57.313 29.630 5.39 0.00 32.70 3.06
2734 3221 9.941664 CAAATGGCTATTTTTCTACTAGTGATG 57.058 33.333 5.14 0.00 34.34 3.07
2735 3222 9.686683 ACAAATGGCTATTTTTCTACTAGTGAT 57.313 29.630 5.14 0.00 34.34 3.06
2736 3223 9.162764 GACAAATGGCTATTTTTCTACTAGTGA 57.837 33.333 12.84 0.00 34.34 3.41
2737 3224 8.398665 GGACAAATGGCTATTTTTCTACTAGTG 58.601 37.037 17.76 2.79 34.76 2.74
2738 3225 7.556635 GGGACAAATGGCTATTTTTCTACTAGT 59.443 37.037 17.76 0.00 34.76 2.57
2739 3226 7.254795 CGGGACAAATGGCTATTTTTCTACTAG 60.255 40.741 17.76 3.43 34.76 2.57
2740 3227 6.540914 CGGGACAAATGGCTATTTTTCTACTA 59.459 38.462 17.76 0.00 34.76 1.82
2741 3228 5.357032 CGGGACAAATGGCTATTTTTCTACT 59.643 40.000 17.76 0.00 34.76 2.57
2742 3229 5.449999 CCGGGACAAATGGCTATTTTTCTAC 60.450 44.000 17.76 11.81 34.76 2.59
2743 3230 4.642885 CCGGGACAAATGGCTATTTTTCTA 59.357 41.667 17.76 0.00 34.76 2.10
2744 3231 3.447229 CCGGGACAAATGGCTATTTTTCT 59.553 43.478 17.76 0.40 34.76 2.52
2745 3232 3.194755 ACCGGGACAAATGGCTATTTTTC 59.805 43.478 6.32 11.95 34.34 2.29
2746 3233 3.169908 ACCGGGACAAATGGCTATTTTT 58.830 40.909 6.32 0.00 34.34 1.94
2747 3234 2.815158 ACCGGGACAAATGGCTATTTT 58.185 42.857 6.32 0.00 34.34 1.82
2748 3235 2.525105 ACCGGGACAAATGGCTATTT 57.475 45.000 6.32 1.61 36.97 1.40
2749 3236 2.291282 TGAACCGGGACAAATGGCTATT 60.291 45.455 6.32 0.00 0.00 1.73
2750 3237 1.283613 TGAACCGGGACAAATGGCTAT 59.716 47.619 6.32 0.00 0.00 2.97
2751 3238 0.693622 TGAACCGGGACAAATGGCTA 59.306 50.000 6.32 0.00 0.00 3.93
2752 3239 0.039618 ATGAACCGGGACAAATGGCT 59.960 50.000 6.32 0.00 0.00 4.75
2753 3240 1.757682 TATGAACCGGGACAAATGGC 58.242 50.000 6.32 0.00 0.00 4.40
2754 3241 2.687935 CCTTATGAACCGGGACAAATGG 59.312 50.000 6.32 5.49 0.00 3.16
2755 3242 2.099098 GCCTTATGAACCGGGACAAATG 59.901 50.000 6.32 0.20 0.00 2.32
2756 3243 2.375146 GCCTTATGAACCGGGACAAAT 58.625 47.619 6.32 0.00 0.00 2.32
2757 3244 1.614850 GGCCTTATGAACCGGGACAAA 60.615 52.381 6.32 2.62 0.00 2.83
2758 3245 0.034863 GGCCTTATGAACCGGGACAA 60.035 55.000 6.32 0.00 0.00 3.18
2759 3246 1.605453 GGCCTTATGAACCGGGACA 59.395 57.895 6.32 5.75 0.00 4.02
2760 3247 1.153025 GGGCCTTATGAACCGGGAC 60.153 63.158 6.32 0.00 0.00 4.46
2761 3248 0.991355 ATGGGCCTTATGAACCGGGA 60.991 55.000 6.32 0.00 0.00 5.14
2762 3249 0.106217 AATGGGCCTTATGAACCGGG 60.106 55.000 6.32 0.00 0.00 5.73
2763 3250 1.408702 CAAATGGGCCTTATGAACCGG 59.591 52.381 4.53 0.00 0.00 5.28
2764 3251 2.099098 GACAAATGGGCCTTATGAACCG 59.901 50.000 4.53 0.00 0.00 4.44
2765 3252 2.430694 GGACAAATGGGCCTTATGAACC 59.569 50.000 4.53 6.66 0.00 3.62
2766 3253 2.430694 GGGACAAATGGGCCTTATGAAC 59.569 50.000 4.53 1.58 0.00 3.18
2767 3254 2.745968 GGGACAAATGGGCCTTATGAA 58.254 47.619 4.53 0.00 0.00 2.57
2768 3255 1.409521 CGGGACAAATGGGCCTTATGA 60.410 52.381 4.53 0.00 0.00 2.15
2769 3256 1.032014 CGGGACAAATGGGCCTTATG 58.968 55.000 4.53 3.10 0.00 1.90
2770 3257 0.106217 CCGGGACAAATGGGCCTTAT 60.106 55.000 4.53 0.00 0.00 1.73
2771 3258 1.304952 CCGGGACAAATGGGCCTTA 59.695 57.895 4.53 0.00 0.00 2.69
2772 3259 2.037208 CCGGGACAAATGGGCCTT 59.963 61.111 4.53 0.00 0.00 4.35
2773 3260 2.852281 AACCGGGACAAATGGGCCT 61.852 57.895 6.32 0.00 0.00 5.19
2774 3261 2.283604 AACCGGGACAAATGGGCC 60.284 61.111 6.32 0.00 0.00 5.80
2775 3262 1.906333 ACAACCGGGACAAATGGGC 60.906 57.895 6.32 0.00 0.00 5.36
2776 3263 1.531739 CCACAACCGGGACAAATGGG 61.532 60.000 6.32 0.00 0.00 4.00
2777 3264 0.538516 TCCACAACCGGGACAAATGG 60.539 55.000 6.32 4.69 0.00 3.16
2778 3265 1.000717 GTTCCACAACCGGGACAAATG 60.001 52.381 6.32 0.00 33.18 2.32
2779 3266 1.324383 GTTCCACAACCGGGACAAAT 58.676 50.000 6.32 0.00 33.18 2.32
2780 3267 0.752376 GGTTCCACAACCGGGACAAA 60.752 55.000 6.32 0.00 43.00 2.83
2781 3268 1.152922 GGTTCCACAACCGGGACAA 60.153 57.895 6.32 0.00 43.00 3.18
2782 3269 2.511900 GGTTCCACAACCGGGACA 59.488 61.111 6.32 0.00 43.00 4.02
2789 3276 2.148768 CTTTAGTCCCGGTTCCACAAC 58.851 52.381 0.00 0.00 0.00 3.32
2790 3277 1.072648 CCTTTAGTCCCGGTTCCACAA 59.927 52.381 0.00 0.00 0.00 3.33
2791 3278 0.688487 CCTTTAGTCCCGGTTCCACA 59.312 55.000 0.00 0.00 0.00 4.17
2792 3279 0.035725 CCCTTTAGTCCCGGTTCCAC 60.036 60.000 0.00 0.00 0.00 4.02
2793 3280 0.474273 ACCCTTTAGTCCCGGTTCCA 60.474 55.000 0.00 0.00 0.00 3.53
2794 3281 0.251354 GACCCTTTAGTCCCGGTTCC 59.749 60.000 0.00 0.00 0.00 3.62
2795 3282 0.108472 CGACCCTTTAGTCCCGGTTC 60.108 60.000 0.00 0.00 32.91 3.62
2796 3283 0.833409 ACGACCCTTTAGTCCCGGTT 60.833 55.000 0.00 0.00 32.91 4.44
2797 3284 0.833409 AACGACCCTTTAGTCCCGGT 60.833 55.000 0.00 0.00 32.91 5.28
2798 3285 1.134995 GTAACGACCCTTTAGTCCCGG 60.135 57.143 0.00 0.00 32.91 5.73
2799 3286 1.821136 AGTAACGACCCTTTAGTCCCG 59.179 52.381 0.00 0.00 32.91 5.14
2800 3287 5.354767 CATTAGTAACGACCCTTTAGTCCC 58.645 45.833 0.00 0.00 32.91 4.46
2801 3288 4.807834 GCATTAGTAACGACCCTTTAGTCC 59.192 45.833 0.00 0.00 32.91 3.85
2802 3289 4.807834 GGCATTAGTAACGACCCTTTAGTC 59.192 45.833 0.00 0.00 0.00 2.59
2803 3290 4.383444 GGGCATTAGTAACGACCCTTTAGT 60.383 45.833 8.75 0.00 34.34 2.24
2804 3291 4.124970 GGGCATTAGTAACGACCCTTTAG 58.875 47.826 8.75 0.00 34.34 1.85
2805 3292 3.776417 AGGGCATTAGTAACGACCCTTTA 59.224 43.478 11.72 0.00 45.55 1.85
2806 3293 2.574824 AGGGCATTAGTAACGACCCTTT 59.425 45.455 11.72 0.00 45.55 3.11
2807 3294 2.093128 CAGGGCATTAGTAACGACCCTT 60.093 50.000 13.98 1.61 45.55 3.95
2808 3295 1.875488 AGGGCATTAGTAACGACCCT 58.125 50.000 11.72 11.72 42.97 4.34
2809 3296 1.208776 ACAGGGCATTAGTAACGACCC 59.791 52.381 0.00 3.07 37.63 4.46
2810 3297 2.685850 ACAGGGCATTAGTAACGACC 57.314 50.000 0.00 0.00 0.00 4.79
2811 3298 3.131755 AGGTACAGGGCATTAGTAACGAC 59.868 47.826 0.00 0.00 30.95 4.34
2812 3299 3.368248 AGGTACAGGGCATTAGTAACGA 58.632 45.455 0.00 0.00 30.95 3.85
2813 3300 3.814005 AGGTACAGGGCATTAGTAACG 57.186 47.619 0.00 0.00 30.95 3.18
2814 3301 6.647229 ACTAAAGGTACAGGGCATTAGTAAC 58.353 40.000 0.00 0.00 33.23 2.50
2815 3302 6.126968 GGACTAAAGGTACAGGGCATTAGTAA 60.127 42.308 0.00 0.00 34.66 2.24
2816 3303 5.364735 GGACTAAAGGTACAGGGCATTAGTA 59.635 44.000 0.00 0.00 34.66 1.82
2817 3304 4.163649 GGACTAAAGGTACAGGGCATTAGT 59.836 45.833 0.00 0.00 36.57 2.24
2818 3305 4.444449 GGGACTAAAGGTACAGGGCATTAG 60.444 50.000 0.00 0.00 0.00 1.73
2819 3306 3.457012 GGGACTAAAGGTACAGGGCATTA 59.543 47.826 0.00 0.00 0.00 1.90
2820 3307 2.241430 GGGACTAAAGGTACAGGGCATT 59.759 50.000 0.00 0.00 0.00 3.56
2821 3308 1.844497 GGGACTAAAGGTACAGGGCAT 59.156 52.381 0.00 0.00 0.00 4.40
2822 3309 1.282382 GGGACTAAAGGTACAGGGCA 58.718 55.000 0.00 0.00 0.00 5.36
2823 3310 0.177373 CGGGACTAAAGGTACAGGGC 59.823 60.000 0.00 0.00 0.00 5.19
2824 3311 0.828677 CCGGGACTAAAGGTACAGGG 59.171 60.000 0.00 0.00 39.92 4.45
2826 3313 3.690475 AAACCGGGACTAAAGGTACAG 57.310 47.619 6.32 0.00 37.26 2.74
2827 3314 4.436113 AAAAACCGGGACTAAAGGTACA 57.564 40.909 6.32 0.00 37.26 2.90
2828 3315 6.255670 CGTATAAAAACCGGGACTAAAGGTAC 59.744 42.308 6.32 0.00 37.26 3.34
2829 3316 6.153680 TCGTATAAAAACCGGGACTAAAGGTA 59.846 38.462 6.32 0.00 37.26 3.08
2830 3317 5.046663 TCGTATAAAAACCGGGACTAAAGGT 60.047 40.000 6.32 0.00 40.50 3.50
2831 3318 5.418676 TCGTATAAAAACCGGGACTAAAGG 58.581 41.667 6.32 0.00 0.00 3.11
2832 3319 6.183360 GGTTCGTATAAAAACCGGGACTAAAG 60.183 42.308 6.32 0.00 35.93 1.85
2833 3320 5.641636 GGTTCGTATAAAAACCGGGACTAAA 59.358 40.000 6.32 0.00 35.93 1.85
2834 3321 5.175127 GGTTCGTATAAAAACCGGGACTAA 58.825 41.667 6.32 0.00 35.93 2.24
2835 3322 4.754322 GGTTCGTATAAAAACCGGGACTA 58.246 43.478 6.32 0.00 35.93 2.59
2836 3323 3.599343 GGTTCGTATAAAAACCGGGACT 58.401 45.455 6.32 0.00 35.93 3.85
2842 3329 3.333804 TGTCCCGGTTCGTATAAAAACC 58.666 45.455 0.00 7.25 41.28 3.27
2843 3330 4.244862 TCTGTCCCGGTTCGTATAAAAAC 58.755 43.478 0.00 0.00 0.00 2.43
2844 3331 4.533919 TCTGTCCCGGTTCGTATAAAAA 57.466 40.909 0.00 0.00 0.00 1.94


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.