Multiple sequence alignment - TraesCS6D01G023100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G023100 chr6D 100.000 4405 0 0 1 4405 8806747 8811151 0.000000e+00 8135
1 TraesCS6D01G023100 chr6D 94.601 2130 70 11 514 2633 8545351 8543257 0.000000e+00 3254
2 TraesCS6D01G023100 chr6D 97.753 1780 34 4 2631 4405 8543319 8541541 0.000000e+00 3061
3 TraesCS6D01G023100 chr6D 90.870 1632 102 17 2631 4252 34083076 34084670 0.000000e+00 2145
4 TraesCS6D01G023100 chr6D 96.977 1191 33 2 1203 2390 8561403 8560213 0.000000e+00 1997
5 TraesCS6D01G023100 chr6D 85.337 1930 156 48 782 2633 34081257 34083137 0.000000e+00 1879
6 TraesCS6D01G023100 chr6D 96.284 592 22 0 3192 3783 8560053 8559462 0.000000e+00 972
7 TraesCS6D01G023100 chr6D 95.229 524 23 2 3781 4302 8559338 8558815 0.000000e+00 828
8 TraesCS6D01G023100 chr6D 89.420 690 19 7 514 1202 8562383 8561747 0.000000e+00 821
9 TraesCS6D01G023100 chr6D 96.988 166 4 1 2987 3152 8560216 8560052 1.210000e-70 278
10 TraesCS6D01G023100 chr6D 91.589 107 8 1 410 516 8545587 8545482 3.550000e-31 147
11 TraesCS6D01G023100 chr6D 98.413 63 1 0 2631 2693 8809317 8809379 1.300000e-20 111
12 TraesCS6D01G023100 chr6D 98.413 63 1 0 2571 2633 8809377 8809439 1.300000e-20 111
13 TraesCS6D01G023100 chr6B 94.118 2244 85 18 404 2633 16439930 16442140 0.000000e+00 3369
14 TraesCS6D01G023100 chr6B 93.984 2244 85 16 404 2633 15210794 15208587 0.000000e+00 3350
15 TraesCS6D01G023100 chr6B 93.733 1803 79 13 2631 4405 16442078 16443874 0.000000e+00 2673
16 TraesCS6D01G023100 chr6B 94.475 1611 71 6 2631 4232 15208649 15207048 0.000000e+00 2466
17 TraesCS6D01G023100 chr6B 95.455 110 5 0 294 403 554803250 554803359 4.530000e-40 176
18 TraesCS6D01G023100 chr6A 92.338 2258 123 24 404 2633 9481825 9484060 0.000000e+00 3166
19 TraesCS6D01G023100 chr6A 93.178 1158 66 9 2631 3783 9483998 9485147 0.000000e+00 1688
20 TraesCS6D01G023100 chr6A 91.271 653 28 11 3781 4405 9485271 9485922 0.000000e+00 863
21 TraesCS6D01G023100 chr5B 85.535 1915 168 42 781 2633 556786316 556784449 0.000000e+00 1901
22 TraesCS6D01G023100 chr5B 87.522 1146 97 18 2631 3771 556784512 556783408 0.000000e+00 1282
23 TraesCS6D01G023100 chr5B 84.646 495 46 14 3781 4246 556783276 556782783 2.400000e-127 466
24 TraesCS6D01G023100 chr4A 74.375 1440 248 79 796 2184 737063916 737062547 1.830000e-138 503
25 TraesCS6D01G023100 chr4A 91.736 121 9 1 293 412 137967141 137967021 2.730000e-37 167
26 TraesCS6D01G023100 chr4A 92.373 118 8 1 293 409 137972668 137972785 2.730000e-37 167
27 TraesCS6D01G023100 chr4A 85.841 113 15 1 4024 4135 737067112 737067000 7.740000e-23 119
28 TraesCS6D01G023100 chr5D 88.814 295 27 2 3942 4231 42078790 42079083 1.510000e-94 357
29 TraesCS6D01G023100 chr5D 93.805 113 7 0 291 403 150835565 150835677 2.110000e-38 171
30 TraesCS6D01G023100 chr3A 92.562 121 8 1 293 412 727233903 727233783 5.860000e-39 172
31 TraesCS6D01G023100 chr3A 89.394 132 9 5 290 418 520436062 520435933 1.270000e-35 161
32 TraesCS6D01G023100 chr2D 91.935 124 9 1 290 412 134301653 134301530 5.860000e-39 172
33 TraesCS6D01G023100 chr3D 91.667 120 9 1 291 409 540564743 540564862 9.800000e-37 165
34 TraesCS6D01G023100 chr1B 93.636 110 7 0 294 403 666933539 666933648 9.800000e-37 165


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G023100 chr6D 8806747 8811151 4404 False 2785.666667 8135 98.942000 1 4405 3 chr6D.!!$F1 4404
1 TraesCS6D01G023100 chr6D 8541541 8545587 4046 True 2154.000000 3254 94.647667 410 4405 3 chr6D.!!$R1 3995
2 TraesCS6D01G023100 chr6D 34081257 34084670 3413 False 2012.000000 2145 88.103500 782 4252 2 chr6D.!!$F2 3470
3 TraesCS6D01G023100 chr6D 8558815 8562383 3568 True 979.200000 1997 94.979600 514 4302 5 chr6D.!!$R2 3788
4 TraesCS6D01G023100 chr6B 16439930 16443874 3944 False 3021.000000 3369 93.925500 404 4405 2 chr6B.!!$F2 4001
5 TraesCS6D01G023100 chr6B 15207048 15210794 3746 True 2908.000000 3350 94.229500 404 4232 2 chr6B.!!$R1 3828
6 TraesCS6D01G023100 chr6A 9481825 9485922 4097 False 1905.666667 3166 92.262333 404 4405 3 chr6A.!!$F1 4001
7 TraesCS6D01G023100 chr5B 556782783 556786316 3533 True 1216.333333 1901 85.901000 781 4246 3 chr5B.!!$R1 3465
8 TraesCS6D01G023100 chr4A 737062547 737067112 4565 True 311.000000 503 80.108000 796 4135 2 chr4A.!!$R2 3339

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
251 252 0.034670 CTTCCTAGGCTTGCTTGGCT 60.035 55.000 2.96 10.01 45.08 4.75 F
252 253 0.035056 TTCCTAGGCTTGCTTGGCTC 60.035 55.000 2.96 0.00 42.90 4.70 F
356 357 0.101759 GCGGACTACATACGGAGCAA 59.898 55.000 0.00 0.00 0.00 3.91 F
953 3408 1.261238 CCCTGTCCTCTCCTCGCTTT 61.261 60.000 0.00 0.00 0.00 3.51 F
2630 5578 1.197721 CGGAGAAACATGTTCCACTGC 59.802 52.381 12.39 14.76 0.00 4.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1257 4081 0.387878 GATACGCTCGCCATCCTCAG 60.388 60.000 0.00 0.00 0.00 3.35 R
1258 4082 1.106944 TGATACGCTCGCCATCCTCA 61.107 55.000 0.00 0.00 0.00 3.86 R
1733 4580 3.364964 CCAGAAGTGGCACAAATACGAAC 60.365 47.826 21.41 0.29 44.16 3.95 R
2670 5618 1.197721 GCAGTGGAACATGTTTCTCCG 59.802 52.381 17.76 7.98 44.52 4.63 R
3538 6542 0.534203 TCAGTGGAGTCGCCCAAAAC 60.534 55.000 0.00 0.00 38.06 2.43 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 8.390854 CAAGAATCAGTTTGTAAGCATTCATC 57.609 34.615 0.00 0.00 0.00 2.92
26 27 6.779117 AGAATCAGTTTGTAAGCATTCATCG 58.221 36.000 0.00 0.00 0.00 3.84
27 28 4.340894 TCAGTTTGTAAGCATTCATCGC 57.659 40.909 0.00 0.00 0.00 4.58
28 29 4.002982 TCAGTTTGTAAGCATTCATCGCT 58.997 39.130 0.00 0.00 42.98 4.93
29 30 5.175127 TCAGTTTGTAAGCATTCATCGCTA 58.825 37.500 0.00 0.00 39.29 4.26
30 31 5.291858 TCAGTTTGTAAGCATTCATCGCTAG 59.708 40.000 0.00 0.00 39.29 3.42
31 32 5.291858 CAGTTTGTAAGCATTCATCGCTAGA 59.708 40.000 0.00 0.00 39.29 2.43
32 33 5.874810 AGTTTGTAAGCATTCATCGCTAGAA 59.125 36.000 0.00 0.00 39.29 2.10
33 34 6.371548 AGTTTGTAAGCATTCATCGCTAGAAA 59.628 34.615 0.00 0.00 39.29 2.52
34 35 6.925610 TTGTAAGCATTCATCGCTAGAAAT 57.074 33.333 0.00 0.00 39.29 2.17
36 37 5.817296 TGTAAGCATTCATCGCTAGAAATGT 59.183 36.000 0.00 0.00 39.29 2.71
38 39 6.925610 AAGCATTCATCGCTAGAAATGTTA 57.074 33.333 0.00 0.00 39.29 2.41
39 40 7.502120 AAGCATTCATCGCTAGAAATGTTAT 57.498 32.000 0.00 0.00 39.29 1.89
40 41 7.502120 AGCATTCATCGCTAGAAATGTTATT 57.498 32.000 0.00 0.00 38.15 1.40
42 43 8.408601 AGCATTCATCGCTAGAAATGTTATTTT 58.591 29.630 0.00 0.00 38.15 1.82
43 44 9.023967 GCATTCATCGCTAGAAATGTTATTTTT 57.976 29.630 0.00 0.00 30.89 1.94
74 75 8.638565 GTTTGAGTTAACGAATGAATGAATTGG 58.361 33.333 0.00 0.00 0.00 3.16
75 76 6.321717 TGAGTTAACGAATGAATGAATTGGC 58.678 36.000 0.00 0.00 0.00 4.52
77 78 2.193306 ACGAATGAATGAATTGGCGC 57.807 45.000 0.00 0.00 0.00 6.53
78 79 1.202290 ACGAATGAATGAATTGGCGCC 60.202 47.619 22.73 22.73 0.00 6.53
79 80 1.202279 CGAATGAATGAATTGGCGCCA 60.202 47.619 29.03 29.03 0.00 5.69
80 81 2.734809 CGAATGAATGAATTGGCGCCAA 60.735 45.455 41.54 41.54 40.47 4.52
81 82 3.260740 GAATGAATGAATTGGCGCCAAA 58.739 40.909 42.74 28.66 39.55 3.28
82 83 2.827800 TGAATGAATTGGCGCCAAAA 57.172 40.000 42.74 30.64 39.55 2.44
84 85 2.001872 GAATGAATTGGCGCCAAAAGG 58.998 47.619 42.74 0.00 39.55 3.11
85 86 0.975887 ATGAATTGGCGCCAAAAGGT 59.024 45.000 42.74 27.99 39.55 3.50
86 87 1.621992 TGAATTGGCGCCAAAAGGTA 58.378 45.000 42.74 24.68 39.55 3.08
87 88 1.964223 TGAATTGGCGCCAAAAGGTAA 59.036 42.857 42.74 21.84 39.55 2.85
88 89 2.564947 TGAATTGGCGCCAAAAGGTAAT 59.435 40.909 42.74 23.85 39.55 1.89
89 90 3.764434 TGAATTGGCGCCAAAAGGTAATA 59.236 39.130 42.74 20.21 39.55 0.98
90 91 3.793797 ATTGGCGCCAAAAGGTAATAC 57.206 42.857 42.74 5.11 39.55 1.89
91 92 1.088306 TGGCGCCAAAAGGTAATACG 58.912 50.000 30.74 0.00 0.00 3.06
92 93 0.248336 GGCGCCAAAAGGTAATACGC 60.248 55.000 24.80 0.00 43.80 4.42
93 94 0.448593 GCGCCAAAAGGTAATACGCA 59.551 50.000 0.00 0.00 43.95 5.24
94 95 1.531058 GCGCCAAAAGGTAATACGCAG 60.531 52.381 0.00 0.00 43.95 5.18
95 96 1.531058 CGCCAAAAGGTAATACGCAGC 60.531 52.381 0.00 0.00 0.00 5.25
96 97 1.531058 GCCAAAAGGTAATACGCAGCG 60.531 52.381 14.82 14.82 0.00 5.18
97 98 1.735571 CCAAAAGGTAATACGCAGCGT 59.264 47.619 26.25 26.25 44.35 5.07
98 99 2.160813 CCAAAAGGTAATACGCAGCGTT 59.839 45.455 28.31 12.05 41.54 4.84
99 100 3.413558 CAAAAGGTAATACGCAGCGTTC 58.586 45.455 28.31 13.84 41.54 3.95
101 102 1.922570 AGGTAATACGCAGCGTTCTG 58.077 50.000 28.31 0.00 41.54 3.02
103 104 1.470285 GGTAATACGCAGCGTTCTGGA 60.470 52.381 28.31 7.97 41.54 3.86
104 105 2.264813 GTAATACGCAGCGTTCTGGAA 58.735 47.619 28.31 7.09 41.54 3.53
105 106 1.803334 AATACGCAGCGTTCTGGAAA 58.197 45.000 28.31 6.22 41.54 3.13
106 107 1.803334 ATACGCAGCGTTCTGGAAAA 58.197 45.000 28.31 5.33 41.54 2.29
107 108 1.584175 TACGCAGCGTTCTGGAAAAA 58.416 45.000 28.31 0.50 41.54 1.94
108 109 0.951558 ACGCAGCGTTCTGGAAAAAT 59.048 45.000 16.61 0.00 36.35 1.82
109 110 1.069227 ACGCAGCGTTCTGGAAAAATC 60.069 47.619 16.61 0.00 36.35 2.17
110 111 1.069296 CGCAGCGTTCTGGAAAAATCA 60.069 47.619 6.65 0.00 40.65 2.57
112 113 3.578688 GCAGCGTTCTGGAAAAATCATT 58.421 40.909 0.00 0.00 40.65 2.57
113 114 4.671508 CGCAGCGTTCTGGAAAAATCATTA 60.672 41.667 6.65 0.00 40.65 1.90
114 115 5.160641 GCAGCGTTCTGGAAAAATCATTAA 58.839 37.500 0.00 0.00 40.65 1.40
116 117 6.311200 GCAGCGTTCTGGAAAAATCATTAATT 59.689 34.615 0.00 0.00 40.65 1.40
117 118 7.463251 GCAGCGTTCTGGAAAAATCATTAATTC 60.463 37.037 0.00 0.00 40.65 2.17
120 121 8.925700 GCGTTCTGGAAAAATCATTAATTCTTT 58.074 29.630 0.00 0.00 0.00 2.52
142 143 9.545105 TCTTTTTGAGCAACAATTGATTAATGT 57.455 25.926 13.59 0.00 38.36 2.71
150 151 8.720562 AGCAACAATTGATTAATGTTTTAAGGC 58.279 29.630 13.59 0.00 31.07 4.35
151 152 8.502387 GCAACAATTGATTAATGTTTTAAGGCA 58.498 29.630 13.59 0.00 31.07 4.75
164 165 7.687005 TGTTTTAAGGCAAAAATCTAACACG 57.313 32.000 1.82 0.00 37.85 4.49
165 166 7.259161 TGTTTTAAGGCAAAAATCTAACACGT 58.741 30.769 1.82 0.00 37.85 4.49
166 167 7.760340 TGTTTTAAGGCAAAAATCTAACACGTT 59.240 29.630 0.00 0.00 37.85 3.99
167 168 7.687005 TTTAAGGCAAAAATCTAACACGTTG 57.313 32.000 0.00 0.00 0.00 4.10
168 169 4.237349 AGGCAAAAATCTAACACGTTGG 57.763 40.909 0.00 0.00 0.00 3.77
169 170 3.886505 AGGCAAAAATCTAACACGTTGGA 59.113 39.130 0.00 0.00 34.59 3.53
170 171 4.522789 AGGCAAAAATCTAACACGTTGGAT 59.477 37.500 3.19 3.19 41.60 3.41
176 177 5.880054 AATCTAACACGTTGGATTTCTGG 57.120 39.130 13.79 0.00 44.72 3.86
178 179 4.566004 TCTAACACGTTGGATTTCTGGAG 58.434 43.478 0.00 0.00 0.00 3.86
180 181 2.494059 ACACGTTGGATTTCTGGAGTG 58.506 47.619 0.00 0.00 34.85 3.51
181 182 2.104111 ACACGTTGGATTTCTGGAGTGA 59.896 45.455 0.00 0.00 33.18 3.41
182 183 2.480419 CACGTTGGATTTCTGGAGTGAC 59.520 50.000 0.00 0.00 0.00 3.67
183 184 2.368875 ACGTTGGATTTCTGGAGTGACT 59.631 45.455 0.00 0.00 0.00 3.41
184 185 3.576982 ACGTTGGATTTCTGGAGTGACTA 59.423 43.478 0.00 0.00 0.00 2.59
188 189 6.347725 CGTTGGATTTCTGGAGTGACTAAAAG 60.348 42.308 0.00 0.00 0.00 2.27
189 190 5.560724 TGGATTTCTGGAGTGACTAAAAGG 58.439 41.667 0.00 0.00 0.00 3.11
190 191 4.396478 GGATTTCTGGAGTGACTAAAAGGC 59.604 45.833 0.00 0.00 0.00 4.35
191 192 4.706842 TTTCTGGAGTGACTAAAAGGCT 57.293 40.909 0.00 0.00 0.00 4.58
192 193 3.963428 TCTGGAGTGACTAAAAGGCTC 57.037 47.619 0.00 0.00 0.00 4.70
193 194 2.567615 TCTGGAGTGACTAAAAGGCTCC 59.432 50.000 0.00 0.00 44.31 4.70
197 198 3.339141 GAGTGACTAAAAGGCTCCAAGG 58.661 50.000 0.00 0.00 0.00 3.61
198 199 1.813178 GTGACTAAAAGGCTCCAAGGC 59.187 52.381 0.00 0.00 41.73 4.35
209 210 2.728007 GCTCCAAGGCCAATTAAGTCT 58.272 47.619 5.01 0.00 0.00 3.24
211 212 4.270008 GCTCCAAGGCCAATTAAGTCTAA 58.730 43.478 5.01 0.00 0.00 2.10
212 213 4.336713 GCTCCAAGGCCAATTAAGTCTAAG 59.663 45.833 5.01 0.00 0.00 2.18
213 214 4.270008 TCCAAGGCCAATTAAGTCTAAGC 58.730 43.478 5.01 0.00 0.00 3.09
214 215 4.016444 CCAAGGCCAATTAAGTCTAAGCA 58.984 43.478 5.01 0.00 0.00 3.91
215 216 4.462483 CCAAGGCCAATTAAGTCTAAGCAA 59.538 41.667 5.01 0.00 0.00 3.91
216 217 5.047377 CCAAGGCCAATTAAGTCTAAGCAAA 60.047 40.000 5.01 0.00 0.00 3.68
217 218 5.644977 AGGCCAATTAAGTCTAAGCAAAC 57.355 39.130 5.01 0.00 0.00 2.93
219 220 5.416013 AGGCCAATTAAGTCTAAGCAAACTC 59.584 40.000 5.01 0.00 0.00 3.01
220 221 5.183140 GGCCAATTAAGTCTAAGCAAACTCA 59.817 40.000 0.00 0.00 0.00 3.41
221 222 6.086871 GCCAATTAAGTCTAAGCAAACTCAC 58.913 40.000 0.00 0.00 0.00 3.51
223 224 7.522374 CCAATTAAGTCTAAGCAAACTCACTC 58.478 38.462 0.00 0.00 0.00 3.51
226 227 4.965200 AGTCTAAGCAAACTCACTCCTT 57.035 40.909 0.00 0.00 0.00 3.36
227 228 4.888917 AGTCTAAGCAAACTCACTCCTTC 58.111 43.478 0.00 0.00 0.00 3.46
228 229 3.997681 GTCTAAGCAAACTCACTCCTTCC 59.002 47.826 0.00 0.00 0.00 3.46
229 230 3.904339 TCTAAGCAAACTCACTCCTTCCT 59.096 43.478 0.00 0.00 0.00 3.36
232 233 3.481453 AGCAAACTCACTCCTTCCTTTC 58.519 45.455 0.00 0.00 0.00 2.62
233 234 3.137360 AGCAAACTCACTCCTTCCTTTCT 59.863 43.478 0.00 0.00 0.00 2.52
234 235 3.885901 GCAAACTCACTCCTTCCTTTCTT 59.114 43.478 0.00 0.00 0.00 2.52
235 236 4.023622 GCAAACTCACTCCTTCCTTTCTTC 60.024 45.833 0.00 0.00 0.00 2.87
236 237 4.359434 AACTCACTCCTTCCTTTCTTCC 57.641 45.455 0.00 0.00 0.00 3.46
237 238 3.592865 ACTCACTCCTTCCTTTCTTCCT 58.407 45.455 0.00 0.00 0.00 3.36
239 240 4.775253 ACTCACTCCTTCCTTTCTTCCTAG 59.225 45.833 0.00 0.00 0.00 3.02
240 241 4.097418 TCACTCCTTCCTTTCTTCCTAGG 58.903 47.826 0.82 0.82 0.00 3.02
241 242 2.841266 ACTCCTTCCTTTCTTCCTAGGC 59.159 50.000 2.96 0.00 0.00 3.93
242 243 3.111484 CTCCTTCCTTTCTTCCTAGGCT 58.889 50.000 2.96 0.00 0.00 4.58
243 244 3.521531 CTCCTTCCTTTCTTCCTAGGCTT 59.478 47.826 2.96 0.00 0.00 4.35
244 245 3.264450 TCCTTCCTTTCTTCCTAGGCTTG 59.736 47.826 2.96 0.00 0.00 4.01
245 246 2.789409 TCCTTTCTTCCTAGGCTTGC 57.211 50.000 2.96 0.00 0.00 4.01
246 247 2.269940 TCCTTTCTTCCTAGGCTTGCT 58.730 47.619 2.96 0.00 0.00 3.91
247 248 2.644798 TCCTTTCTTCCTAGGCTTGCTT 59.355 45.455 2.96 0.00 0.00 3.91
248 249 2.751806 CCTTTCTTCCTAGGCTTGCTTG 59.248 50.000 2.96 0.00 0.00 4.01
250 251 0.035056 TCTTCCTAGGCTTGCTTGGC 60.035 55.000 2.96 0.00 0.00 4.52
251 252 0.034670 CTTCCTAGGCTTGCTTGGCT 60.035 55.000 2.96 10.01 45.08 4.75
252 253 0.035056 TTCCTAGGCTTGCTTGGCTC 60.035 55.000 2.96 0.00 42.90 4.70
253 254 1.817099 CCTAGGCTTGCTTGGCTCG 60.817 63.158 0.00 3.82 42.90 5.03
256 257 2.521958 TAGGCTTGCTTGGCTCGACC 62.522 60.000 8.63 0.00 42.90 4.79
264 265 2.279851 TGGCTCGACCACAACACG 60.280 61.111 3.02 0.00 46.36 4.49
265 266 3.712881 GGCTCGACCACAACACGC 61.713 66.667 0.00 0.00 38.86 5.34
267 268 2.530497 GCTCGACCACAACACGCAA 61.530 57.895 0.00 0.00 0.00 4.85
269 270 0.315869 CTCGACCACAACACGCAAAC 60.316 55.000 0.00 0.00 0.00 2.93
270 271 1.019805 TCGACCACAACACGCAAACA 61.020 50.000 0.00 0.00 0.00 2.83
271 272 0.859788 CGACCACAACACGCAAACAC 60.860 55.000 0.00 0.00 0.00 3.32
272 273 0.524604 GACCACAACACGCAAACACC 60.525 55.000 0.00 0.00 0.00 4.16
274 275 1.425825 CACAACACGCAAACACCGA 59.574 52.632 0.00 0.00 0.00 4.69
275 276 0.859788 CACAACACGCAAACACCGAC 60.860 55.000 0.00 0.00 0.00 4.79
276 277 1.298041 CAACACGCAAACACCGACC 60.298 57.895 0.00 0.00 0.00 4.79
277 278 1.745864 AACACGCAAACACCGACCA 60.746 52.632 0.00 0.00 0.00 4.02
279 280 2.177580 CACGCAAACACCGACCAGT 61.178 57.895 0.00 0.00 0.00 4.00
280 281 2.177580 ACGCAAACACCGACCAGTG 61.178 57.895 0.00 0.00 43.65 3.66
281 282 2.892334 CGCAAACACCGACCAGTGG 61.892 63.158 7.91 7.91 42.28 4.00
282 283 3.030652 CAAACACCGACCAGTGGC 58.969 61.111 9.78 0.82 42.28 5.01
283 284 2.590575 AAACACCGACCAGTGGCG 60.591 61.111 9.78 13.78 42.28 5.69
291 292 4.927782 ACCAGTGGCGCTCGCAAA 62.928 61.111 16.36 0.66 44.11 3.68
292 293 4.093952 CCAGTGGCGCTCGCAAAG 62.094 66.667 16.36 1.29 44.11 2.77
293 294 3.349006 CAGTGGCGCTCGCAAAGT 61.349 61.111 16.36 3.86 44.11 2.66
294 295 2.027073 CAGTGGCGCTCGCAAAGTA 61.027 57.895 16.36 0.00 44.11 2.24
295 296 2.027625 AGTGGCGCTCGCAAAGTAC 61.028 57.895 16.36 6.65 44.11 2.73
296 297 2.027625 GTGGCGCTCGCAAAGTACT 61.028 57.895 16.36 0.00 44.11 2.73
298 299 2.453638 GGCGCTCGCAAAGTACTCC 61.454 63.158 16.36 0.00 44.11 3.85
299 300 2.453638 GCGCTCGCAAAGTACTCCC 61.454 63.158 9.59 0.00 41.49 4.30
301 302 0.802607 CGCTCGCAAAGTACTCCCTC 60.803 60.000 0.00 0.00 0.00 4.30
304 305 1.482593 CTCGCAAAGTACTCCCTCCAT 59.517 52.381 0.00 0.00 0.00 3.41
305 306 1.906574 TCGCAAAGTACTCCCTCCATT 59.093 47.619 0.00 0.00 0.00 3.16
306 307 2.093658 TCGCAAAGTACTCCCTCCATTC 60.094 50.000 0.00 0.00 0.00 2.67
307 308 2.644676 GCAAAGTACTCCCTCCATTCC 58.355 52.381 0.00 0.00 0.00 3.01
308 309 2.239907 GCAAAGTACTCCCTCCATTCCT 59.760 50.000 0.00 0.00 0.00 3.36
309 310 3.454812 GCAAAGTACTCCCTCCATTCCTA 59.545 47.826 0.00 0.00 0.00 2.94
310 311 4.080526 GCAAAGTACTCCCTCCATTCCTAA 60.081 45.833 0.00 0.00 0.00 2.69
313 314 5.896073 AGTACTCCCTCCATTCCTAAATG 57.104 43.478 0.00 0.00 41.69 2.32
314 315 5.289510 AGTACTCCCTCCATTCCTAAATGT 58.710 41.667 0.00 0.00 40.63 2.71
316 317 6.906901 AGTACTCCCTCCATTCCTAAATGTAA 59.093 38.462 0.00 0.00 40.63 2.41
317 318 6.253946 ACTCCCTCCATTCCTAAATGTAAG 57.746 41.667 0.00 0.00 40.63 2.34
318 319 5.970640 ACTCCCTCCATTCCTAAATGTAAGA 59.029 40.000 0.00 0.00 40.63 2.10
319 320 6.126739 ACTCCCTCCATTCCTAAATGTAAGAC 60.127 42.308 0.00 0.00 40.63 3.01
322 323 7.036863 TCCCTCCATTCCTAAATGTAAGACTTT 60.037 37.037 0.00 0.00 40.63 2.66
323 324 7.615757 CCCTCCATTCCTAAATGTAAGACTTTT 59.384 37.037 0.00 0.00 40.63 2.27
342 343 8.451748 AGACTTTTTAGAGATTTTAATGCGGAC 58.548 33.333 0.00 0.00 0.00 4.79
346 347 8.780846 TTTTAGAGATTTTAATGCGGACTACA 57.219 30.769 0.00 0.00 0.00 2.74
349 350 7.948278 AGAGATTTTAATGCGGACTACATAC 57.052 36.000 0.00 0.00 0.00 2.39
351 352 5.694910 AGATTTTAATGCGGACTACATACGG 59.305 40.000 0.00 0.00 0.00 4.02
352 353 4.652421 TTTAATGCGGACTACATACGGA 57.348 40.909 0.00 0.00 0.00 4.69
353 354 2.795175 AATGCGGACTACATACGGAG 57.205 50.000 0.00 0.00 0.00 4.63
354 355 0.314302 ATGCGGACTACATACGGAGC 59.686 55.000 0.00 0.00 0.00 4.70
355 356 1.033202 TGCGGACTACATACGGAGCA 61.033 55.000 0.00 0.00 0.00 4.26
356 357 0.101759 GCGGACTACATACGGAGCAA 59.898 55.000 0.00 0.00 0.00 3.91
357 358 1.470285 GCGGACTACATACGGAGCAAA 60.470 52.381 0.00 0.00 0.00 3.68
358 359 2.883574 CGGACTACATACGGAGCAAAA 58.116 47.619 0.00 0.00 0.00 2.44
359 360 3.454375 CGGACTACATACGGAGCAAAAT 58.546 45.455 0.00 0.00 0.00 1.82
362 363 4.508124 GGACTACATACGGAGCAAAATGAG 59.492 45.833 0.00 0.00 0.00 2.90
363 364 5.086104 ACTACATACGGAGCAAAATGAGT 57.914 39.130 0.00 0.00 0.00 3.41
364 365 4.870426 ACTACATACGGAGCAAAATGAGTG 59.130 41.667 0.00 0.00 0.00 3.51
365 366 3.937814 ACATACGGAGCAAAATGAGTGA 58.062 40.909 0.00 0.00 0.00 3.41
367 368 4.943705 ACATACGGAGCAAAATGAGTGAAT 59.056 37.500 0.00 0.00 0.00 2.57
368 369 5.065218 ACATACGGAGCAAAATGAGTGAATC 59.935 40.000 0.00 0.00 0.00 2.52
369 370 3.679389 ACGGAGCAAAATGAGTGAATCT 58.321 40.909 0.00 0.00 0.00 2.40
371 372 4.631813 ACGGAGCAAAATGAGTGAATCTAC 59.368 41.667 0.00 0.00 0.00 2.59
372 373 4.631377 CGGAGCAAAATGAGTGAATCTACA 59.369 41.667 0.00 0.00 0.00 2.74
408 409 7.179966 TGTCTATATACAACCGTATGGATCCT 58.820 38.462 14.23 0.89 38.79 3.24
439 440 2.751806 GCCAAAGCTCTGCTATTCAGTT 59.248 45.455 0.00 0.00 43.32 3.16
566 700 2.096713 GCTTTGTTGAGTACTGCTGTCG 60.097 50.000 0.00 0.00 0.00 4.35
622 757 4.692155 ACATTACTAAAAACGCCGCTTAGT 59.308 37.500 10.45 10.45 38.89 2.24
953 3408 1.261238 CCCTGTCCTCTCCTCGCTTT 61.261 60.000 0.00 0.00 0.00 3.51
1128 3594 5.010314 TGGATAGGTAACGCGATATTTGTCT 59.990 40.000 15.93 1.40 46.39 3.41
1257 4081 1.795286 CAAGGTTGTCACGCTCTTCTC 59.205 52.381 0.00 0.00 0.00 2.87
1258 4082 1.333177 AGGTTGTCACGCTCTTCTCT 58.667 50.000 0.00 0.00 0.00 3.10
1374 4198 6.043474 ACCATTAGTGTAGAGTGGTTGGTTTA 59.957 38.462 0.00 0.00 40.08 2.01
1520 4349 8.593679 TCTTCTTTCATGTCCTCTTTGTATGTA 58.406 33.333 0.00 0.00 0.00 2.29
1542 4383 8.671384 TGTAATTGTGCAATAGTATAGGAACC 57.329 34.615 0.00 0.00 0.00 3.62
1733 4580 8.809159 ACTCAATGAGTATAGATTGATGTTCG 57.191 34.615 15.09 0.00 41.51 3.95
1742 4589 9.745880 AGTATAGATTGATGTTCGTTCGTATTT 57.254 29.630 0.00 0.00 0.00 1.40
1948 4815 4.775440 ACGAACAATTTTGTCGTCGTAA 57.225 36.364 17.06 0.00 46.56 3.18
2340 5267 2.948979 ACAGACATCAAACGGCTCAAAA 59.051 40.909 0.00 0.00 0.00 2.44
2611 5559 4.026558 CACAACATTCCGTGACATAGATCG 60.027 45.833 0.00 0.00 35.02 3.69
2612 5560 3.371102 ACATTCCGTGACATAGATCGG 57.629 47.619 0.00 0.00 43.65 4.18
2615 5563 2.632987 TCCGTGACATAGATCGGAGA 57.367 50.000 0.32 0.00 45.49 3.71
2616 5564 2.927028 TCCGTGACATAGATCGGAGAA 58.073 47.619 0.32 0.00 45.49 2.87
2617 5565 3.284617 TCCGTGACATAGATCGGAGAAA 58.715 45.455 0.32 0.00 45.49 2.52
2618 5566 3.066342 TCCGTGACATAGATCGGAGAAAC 59.934 47.826 0.32 0.00 45.49 2.78
2619 5567 3.181490 CCGTGACATAGATCGGAGAAACA 60.181 47.826 0.00 0.00 44.86 2.83
2620 5568 4.499865 CCGTGACATAGATCGGAGAAACAT 60.500 45.833 0.00 0.00 44.86 2.71
2621 5569 4.442403 CGTGACATAGATCGGAGAAACATG 59.558 45.833 0.00 0.00 43.58 3.21
2622 5570 5.352284 GTGACATAGATCGGAGAAACATGT 58.648 41.667 0.00 0.00 43.58 3.21
2623 5571 5.812642 GTGACATAGATCGGAGAAACATGTT 59.187 40.000 4.92 4.92 43.58 2.71
2624 5572 6.019479 GTGACATAGATCGGAGAAACATGTTC 60.019 42.308 12.39 5.78 43.58 3.18
2625 5573 5.360591 ACATAGATCGGAGAAACATGTTCC 58.639 41.667 12.39 8.30 43.58 3.62
2626 5574 3.981071 AGATCGGAGAAACATGTTCCA 57.019 42.857 12.39 1.07 43.58 3.53
2627 5575 3.600388 AGATCGGAGAAACATGTTCCAC 58.400 45.455 12.39 6.89 43.58 4.02
2628 5576 3.261897 AGATCGGAGAAACATGTTCCACT 59.738 43.478 12.39 11.54 43.58 4.00
2629 5577 2.766313 TCGGAGAAACATGTTCCACTG 58.234 47.619 12.39 2.78 0.00 3.66
2630 5578 1.197721 CGGAGAAACATGTTCCACTGC 59.802 52.381 12.39 14.76 0.00 4.40
2631 5579 2.229792 GGAGAAACATGTTCCACTGCA 58.770 47.619 12.39 0.00 0.00 4.41
2632 5580 2.821969 GGAGAAACATGTTCCACTGCAT 59.178 45.455 12.39 0.00 0.00 3.96
2633 5581 4.009675 GGAGAAACATGTTCCACTGCATA 58.990 43.478 12.39 0.00 0.00 3.14
2634 5582 4.142600 GGAGAAACATGTTCCACTGCATAC 60.143 45.833 12.39 0.68 0.00 2.39
2635 5583 4.655963 AGAAACATGTTCCACTGCATACT 58.344 39.130 12.39 0.00 0.00 2.12
2636 5584 4.697352 AGAAACATGTTCCACTGCATACTC 59.303 41.667 12.39 0.96 0.00 2.59
2637 5585 3.988976 ACATGTTCCACTGCATACTCT 57.011 42.857 0.00 0.00 0.00 3.24
2638 5586 3.866651 ACATGTTCCACTGCATACTCTC 58.133 45.455 0.00 0.00 0.00 3.20
2639 5587 3.517100 ACATGTTCCACTGCATACTCTCT 59.483 43.478 0.00 0.00 0.00 3.10
2640 5588 4.019860 ACATGTTCCACTGCATACTCTCTT 60.020 41.667 0.00 0.00 0.00 2.85
2641 5589 4.623932 TGTTCCACTGCATACTCTCTTT 57.376 40.909 0.00 0.00 0.00 2.52
2642 5590 4.973168 TGTTCCACTGCATACTCTCTTTT 58.027 39.130 0.00 0.00 0.00 2.27
2643 5591 6.109156 TGTTCCACTGCATACTCTCTTTTA 57.891 37.500 0.00 0.00 0.00 1.52
2644 5592 6.711277 TGTTCCACTGCATACTCTCTTTTAT 58.289 36.000 0.00 0.00 0.00 1.40
2645 5593 6.818644 TGTTCCACTGCATACTCTCTTTTATC 59.181 38.462 0.00 0.00 0.00 1.75
2646 5594 5.592054 TCCACTGCATACTCTCTTTTATCG 58.408 41.667 0.00 0.00 0.00 2.92
2647 5595 5.127194 TCCACTGCATACTCTCTTTTATCGT 59.873 40.000 0.00 0.00 0.00 3.73
2648 5596 5.460419 CCACTGCATACTCTCTTTTATCGTC 59.540 44.000 0.00 0.00 0.00 4.20
2649 5597 6.036470 CACTGCATACTCTCTTTTATCGTCA 58.964 40.000 0.00 0.00 0.00 4.35
2650 5598 6.020281 CACTGCATACTCTCTTTTATCGTCAC 60.020 42.308 0.00 0.00 0.00 3.67
2651 5599 5.961272 TGCATACTCTCTTTTATCGTCACA 58.039 37.500 0.00 0.00 0.00 3.58
2652 5600 6.394809 TGCATACTCTCTTTTATCGTCACAA 58.605 36.000 0.00 0.00 0.00 3.33
2653 5601 6.310467 TGCATACTCTCTTTTATCGTCACAAC 59.690 38.462 0.00 0.00 0.00 3.32
2654 5602 6.310467 GCATACTCTCTTTTATCGTCACAACA 59.690 38.462 0.00 0.00 0.00 3.33
2655 5603 7.010552 GCATACTCTCTTTTATCGTCACAACAT 59.989 37.037 0.00 0.00 0.00 2.71
2656 5604 8.873830 CATACTCTCTTTTATCGTCACAACATT 58.126 33.333 0.00 0.00 0.00 2.71
2657 5605 7.352719 ACTCTCTTTTATCGTCACAACATTC 57.647 36.000 0.00 0.00 0.00 2.67
2658 5606 7.155328 ACTCTCTTTTATCGTCACAACATTCT 58.845 34.615 0.00 0.00 0.00 2.40
2659 5607 7.116948 ACTCTCTTTTATCGTCACAACATTCTG 59.883 37.037 0.00 0.00 0.00 3.02
2660 5608 6.929049 TCTCTTTTATCGTCACAACATTCTGT 59.071 34.615 0.00 0.00 0.00 3.41
2661 5609 6.887368 TCTTTTATCGTCACAACATTCTGTG 58.113 36.000 0.00 0.00 46.70 3.66
2734 5682 6.341880 TCTGTACACTCGAGTTATCTTACG 57.658 41.667 17.26 4.41 0.00 3.18
2749 5697 8.529476 AGTTATCTTACGTATTCAGGTCAACTT 58.471 33.333 0.00 0.00 0.00 2.66
2946 5899 2.213499 GGATGTAAGCCAATGAGTCGG 58.787 52.381 0.00 0.00 46.15 4.79
3015 5968 8.757982 ATCTTGGATTAGCACTTTCATTACAT 57.242 30.769 0.00 0.00 0.00 2.29
3336 6336 0.106521 GGAGAAGAGCAGAGATGGGC 59.893 60.000 0.00 0.00 0.00 5.36
3538 6542 4.744795 ACTCAGCCTTTATAGACACAGG 57.255 45.455 0.00 0.00 0.00 4.00
4260 7430 7.602517 AACATTGAACCGAACAAATGAAAAA 57.397 28.000 0.00 0.00 0.00 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.217636 CGATGAATGCTTACAAACTGATTCTTG 59.782 37.037 0.00 0.00 0.00 3.02
2 3 6.676456 GCGATGAATGCTTACAAACTGATTCT 60.676 38.462 0.00 0.00 0.00 2.40
3 4 5.453587 GCGATGAATGCTTACAAACTGATTC 59.546 40.000 0.00 0.00 0.00 2.52
4 5 5.124457 AGCGATGAATGCTTACAAACTGATT 59.876 36.000 0.00 0.00 40.48 2.57
5 6 4.637534 AGCGATGAATGCTTACAAACTGAT 59.362 37.500 0.00 0.00 40.48 2.90
6 7 4.002982 AGCGATGAATGCTTACAAACTGA 58.997 39.130 0.00 0.00 40.48 3.41
7 8 4.346734 AGCGATGAATGCTTACAAACTG 57.653 40.909 0.00 0.00 40.48 3.16
8 9 5.419542 TCTAGCGATGAATGCTTACAAACT 58.580 37.500 0.00 0.00 43.71 2.66
9 10 5.718649 TCTAGCGATGAATGCTTACAAAC 57.281 39.130 0.00 0.00 43.71 2.93
10 11 6.735678 TTTCTAGCGATGAATGCTTACAAA 57.264 33.333 0.00 0.00 43.71 2.83
11 12 6.316140 ACATTTCTAGCGATGAATGCTTACAA 59.684 34.615 10.85 0.00 43.71 2.41
13 14 6.292389 ACATTTCTAGCGATGAATGCTTAC 57.708 37.500 10.85 0.00 43.71 2.34
14 15 6.925610 AACATTTCTAGCGATGAATGCTTA 57.074 33.333 10.85 0.00 43.71 3.09
15 16 5.824904 AACATTTCTAGCGATGAATGCTT 57.175 34.783 10.85 0.27 43.71 3.91
16 17 7.502120 AATAACATTTCTAGCGATGAATGCT 57.498 32.000 10.85 0.00 46.29 3.79
48 49 8.638565 CCAATTCATTCATTCGTTAACTCAAAC 58.361 33.333 3.71 0.00 0.00 2.93
49 50 7.328249 GCCAATTCATTCATTCGTTAACTCAAA 59.672 33.333 3.71 0.00 0.00 2.69
51 52 6.321717 GCCAATTCATTCATTCGTTAACTCA 58.678 36.000 3.71 0.00 0.00 3.41
54 55 4.027702 GCGCCAATTCATTCATTCGTTAAC 60.028 41.667 0.00 0.00 0.00 2.01
56 57 3.488384 GGCGCCAATTCATTCATTCGTTA 60.488 43.478 24.80 0.00 0.00 3.18
57 58 2.529151 GCGCCAATTCATTCATTCGTT 58.471 42.857 0.00 0.00 0.00 3.85
58 59 1.202290 GGCGCCAATTCATTCATTCGT 60.202 47.619 24.80 0.00 0.00 3.85
59 60 1.202279 TGGCGCCAATTCATTCATTCG 60.202 47.619 30.74 0.00 0.00 3.34
62 63 3.264104 CTTTTGGCGCCAATTCATTCAT 58.736 40.909 40.32 0.00 35.70 2.57
63 64 2.612471 CCTTTTGGCGCCAATTCATTCA 60.612 45.455 40.32 22.43 35.70 2.57
64 65 2.001872 CCTTTTGGCGCCAATTCATTC 58.998 47.619 40.32 4.98 35.70 2.67
66 67 0.975887 ACCTTTTGGCGCCAATTCAT 59.024 45.000 40.32 24.00 45.59 2.57
67 68 1.621992 TACCTTTTGGCGCCAATTCA 58.378 45.000 40.32 24.78 45.59 2.57
68 69 2.734276 TTACCTTTTGGCGCCAATTC 57.266 45.000 40.32 8.36 45.59 2.17
69 70 3.428316 CGTATTACCTTTTGGCGCCAATT 60.428 43.478 40.32 26.01 45.59 2.32
70 71 2.098443 CGTATTACCTTTTGGCGCCAAT 59.902 45.455 40.32 27.99 45.59 3.16
72 73 1.088306 CGTATTACCTTTTGGCGCCA 58.912 50.000 29.03 29.03 45.59 5.69
73 74 0.248336 GCGTATTACCTTTTGGCGCC 60.248 55.000 22.73 22.73 45.59 6.53
74 75 0.448593 TGCGTATTACCTTTTGGCGC 59.551 50.000 0.00 0.00 45.59 6.53
75 76 1.531058 GCTGCGTATTACCTTTTGGCG 60.531 52.381 0.00 0.00 45.59 5.69
77 78 1.735571 ACGCTGCGTATTACCTTTTGG 59.264 47.619 27.89 0.00 41.72 3.28
78 79 3.124636 AGAACGCTGCGTATTACCTTTTG 59.875 43.478 29.18 0.00 39.99 2.44
79 80 3.124636 CAGAACGCTGCGTATTACCTTTT 59.875 43.478 29.18 9.20 39.99 2.27
80 81 2.671396 CAGAACGCTGCGTATTACCTTT 59.329 45.455 29.18 10.02 39.99 3.11
81 82 2.268298 CAGAACGCTGCGTATTACCTT 58.732 47.619 29.18 10.86 39.99 3.50
82 83 1.470979 CCAGAACGCTGCGTATTACCT 60.471 52.381 29.18 11.69 39.99 3.08
84 85 1.917273 TCCAGAACGCTGCGTATTAC 58.083 50.000 29.18 18.54 39.99 1.89
85 86 2.658373 TTCCAGAACGCTGCGTATTA 57.342 45.000 29.18 9.65 39.99 0.98
86 87 1.803334 TTTCCAGAACGCTGCGTATT 58.197 45.000 29.18 14.23 39.99 1.89
87 88 1.803334 TTTTCCAGAACGCTGCGTAT 58.197 45.000 29.18 17.25 39.99 3.06
88 89 1.584175 TTTTTCCAGAACGCTGCGTA 58.416 45.000 29.18 9.55 39.99 4.42
89 90 0.951558 ATTTTTCCAGAACGCTGCGT 59.048 45.000 23.57 23.57 43.97 5.24
90 91 1.069296 TGATTTTTCCAGAACGCTGCG 60.069 47.619 21.91 21.91 40.91 5.18
91 92 2.704725 TGATTTTTCCAGAACGCTGC 57.295 45.000 0.00 0.00 40.91 5.25
92 93 7.756722 AGAATTAATGATTTTTCCAGAACGCTG 59.243 33.333 0.00 0.00 41.93 5.18
93 94 7.830739 AGAATTAATGATTTTTCCAGAACGCT 58.169 30.769 0.00 0.00 0.00 5.07
94 95 8.466086 AAGAATTAATGATTTTTCCAGAACGC 57.534 30.769 0.00 0.00 0.00 4.84
116 117 9.545105 ACATTAATCAATTGTTGCTCAAAAAGA 57.455 25.926 5.13 0.24 39.62 2.52
125 126 8.502387 TGCCTTAAAACATTAATCAATTGTTGC 58.498 29.630 5.13 0.00 0.00 4.17
138 139 8.760569 CGTGTTAGATTTTTGCCTTAAAACATT 58.239 29.630 0.00 0.00 37.96 2.71
139 140 7.923878 ACGTGTTAGATTTTTGCCTTAAAACAT 59.076 29.630 0.00 0.00 37.96 2.71
141 142 7.688478 ACGTGTTAGATTTTTGCCTTAAAAC 57.312 32.000 0.00 0.00 37.96 2.43
142 143 7.222999 CCAACGTGTTAGATTTTTGCCTTAAAA 59.777 33.333 0.00 0.00 36.51 1.52
143 144 6.697892 CCAACGTGTTAGATTTTTGCCTTAAA 59.302 34.615 0.00 0.00 0.00 1.52
145 146 5.531659 TCCAACGTGTTAGATTTTTGCCTTA 59.468 36.000 0.00 0.00 0.00 2.69
146 147 4.339814 TCCAACGTGTTAGATTTTTGCCTT 59.660 37.500 0.00 0.00 0.00 4.35
147 148 3.886505 TCCAACGTGTTAGATTTTTGCCT 59.113 39.130 0.00 0.00 0.00 4.75
148 149 4.231718 TCCAACGTGTTAGATTTTTGCC 57.768 40.909 0.00 0.00 0.00 4.52
149 150 6.640907 AGAAATCCAACGTGTTAGATTTTTGC 59.359 34.615 16.44 7.66 39.66 3.68
150 151 7.114811 CCAGAAATCCAACGTGTTAGATTTTTG 59.885 37.037 20.12 20.12 39.66 2.44
151 152 7.013846 TCCAGAAATCCAACGTGTTAGATTTTT 59.986 33.333 16.44 10.61 39.66 1.94
152 153 6.488683 TCCAGAAATCCAACGTGTTAGATTTT 59.511 34.615 16.44 7.54 39.66 1.82
153 154 6.001460 TCCAGAAATCCAACGTGTTAGATTT 58.999 36.000 15.65 15.65 41.29 2.17
154 155 5.556915 TCCAGAAATCCAACGTGTTAGATT 58.443 37.500 1.34 1.34 33.49 2.40
155 156 5.160607 TCCAGAAATCCAACGTGTTAGAT 57.839 39.130 0.00 0.00 0.00 1.98
157 158 4.152402 CACTCCAGAAATCCAACGTGTTAG 59.848 45.833 0.00 0.00 0.00 2.34
159 160 2.878406 CACTCCAGAAATCCAACGTGTT 59.122 45.455 0.00 0.00 0.00 3.32
161 162 2.480419 GTCACTCCAGAAATCCAACGTG 59.520 50.000 0.00 0.00 0.00 4.49
162 163 2.368875 AGTCACTCCAGAAATCCAACGT 59.631 45.455 0.00 0.00 0.00 3.99
163 164 3.045601 AGTCACTCCAGAAATCCAACG 57.954 47.619 0.00 0.00 0.00 4.10
164 165 6.072452 CCTTTTAGTCACTCCAGAAATCCAAC 60.072 42.308 0.00 0.00 0.00 3.77
165 166 6.003950 CCTTTTAGTCACTCCAGAAATCCAA 58.996 40.000 0.00 0.00 0.00 3.53
166 167 5.560724 CCTTTTAGTCACTCCAGAAATCCA 58.439 41.667 0.00 0.00 0.00 3.41
167 168 4.396478 GCCTTTTAGTCACTCCAGAAATCC 59.604 45.833 0.00 0.00 0.00 3.01
168 169 5.249420 AGCCTTTTAGTCACTCCAGAAATC 58.751 41.667 0.00 0.00 0.00 2.17
169 170 5.248380 AGCCTTTTAGTCACTCCAGAAAT 57.752 39.130 0.00 0.00 0.00 2.17
170 171 4.505039 GGAGCCTTTTAGTCACTCCAGAAA 60.505 45.833 2.54 0.00 45.16 2.52
171 172 3.008049 GGAGCCTTTTAGTCACTCCAGAA 59.992 47.826 2.54 0.00 45.16 3.02
172 173 2.567615 GGAGCCTTTTAGTCACTCCAGA 59.432 50.000 2.54 0.00 45.16 3.86
173 174 2.979240 GGAGCCTTTTAGTCACTCCAG 58.021 52.381 2.54 0.00 45.16 3.86
176 177 3.339141 CCTTGGAGCCTTTTAGTCACTC 58.661 50.000 0.00 0.00 0.00 3.51
178 179 1.813178 GCCTTGGAGCCTTTTAGTCAC 59.187 52.381 0.00 0.00 0.00 3.67
189 190 2.728007 AGACTTAATTGGCCTTGGAGC 58.272 47.619 3.32 0.00 0.00 4.70
190 191 4.336713 GCTTAGACTTAATTGGCCTTGGAG 59.663 45.833 3.32 0.00 0.00 3.86
191 192 4.263727 TGCTTAGACTTAATTGGCCTTGGA 60.264 41.667 3.32 0.00 0.00 3.53
192 193 4.016444 TGCTTAGACTTAATTGGCCTTGG 58.984 43.478 3.32 0.00 0.00 3.61
193 194 5.643379 TTGCTTAGACTTAATTGGCCTTG 57.357 39.130 3.32 0.00 0.00 3.61
194 195 5.775195 AGTTTGCTTAGACTTAATTGGCCTT 59.225 36.000 3.32 0.00 0.00 4.35
197 198 6.072452 AGTGAGTTTGCTTAGACTTAATTGGC 60.072 38.462 0.00 0.00 0.00 4.52
198 199 7.361286 GGAGTGAGTTTGCTTAGACTTAATTGG 60.361 40.741 0.00 0.00 0.00 3.16
199 200 7.389053 AGGAGTGAGTTTGCTTAGACTTAATTG 59.611 37.037 0.00 0.00 0.00 2.32
200 201 7.454225 AGGAGTGAGTTTGCTTAGACTTAATT 58.546 34.615 0.00 0.00 0.00 1.40
201 202 7.010339 AGGAGTGAGTTTGCTTAGACTTAAT 57.990 36.000 0.00 0.00 0.00 1.40
203 204 6.420913 AAGGAGTGAGTTTGCTTAGACTTA 57.579 37.500 0.00 0.00 0.00 2.24
204 205 4.965200 AGGAGTGAGTTTGCTTAGACTT 57.035 40.909 0.00 0.00 0.00 3.01
206 207 3.997681 GGAAGGAGTGAGTTTGCTTAGAC 59.002 47.826 0.00 0.00 0.00 2.59
207 208 3.904339 AGGAAGGAGTGAGTTTGCTTAGA 59.096 43.478 0.00 0.00 0.00 2.10
209 210 4.706842 AAGGAAGGAGTGAGTTTGCTTA 57.293 40.909 0.00 0.00 31.90 3.09
211 212 3.137360 AGAAAGGAAGGAGTGAGTTTGCT 59.863 43.478 0.00 0.00 0.00 3.91
212 213 3.481453 AGAAAGGAAGGAGTGAGTTTGC 58.519 45.455 0.00 0.00 0.00 3.68
213 214 4.517075 GGAAGAAAGGAAGGAGTGAGTTTG 59.483 45.833 0.00 0.00 0.00 2.93
214 215 4.413851 AGGAAGAAAGGAAGGAGTGAGTTT 59.586 41.667 0.00 0.00 0.00 2.66
215 216 3.977326 AGGAAGAAAGGAAGGAGTGAGTT 59.023 43.478 0.00 0.00 0.00 3.01
216 217 3.592865 AGGAAGAAAGGAAGGAGTGAGT 58.407 45.455 0.00 0.00 0.00 3.41
217 218 4.161377 CCTAGGAAGAAAGGAAGGAGTGAG 59.839 50.000 1.05 0.00 34.58 3.51
219 220 3.369997 GCCTAGGAAGAAAGGAAGGAGTG 60.370 52.174 14.75 0.00 34.58 3.51
220 221 2.841266 GCCTAGGAAGAAAGGAAGGAGT 59.159 50.000 14.75 0.00 34.58 3.85
221 222 3.111484 AGCCTAGGAAGAAAGGAAGGAG 58.889 50.000 14.75 0.00 34.58 3.69
223 224 3.615155 CAAGCCTAGGAAGAAAGGAAGG 58.385 50.000 14.75 0.00 34.58 3.46
226 227 2.269940 AGCAAGCCTAGGAAGAAAGGA 58.730 47.619 14.75 0.00 34.58 3.36
227 228 2.751806 CAAGCAAGCCTAGGAAGAAAGG 59.248 50.000 14.75 0.00 35.86 3.11
228 229 2.751806 CCAAGCAAGCCTAGGAAGAAAG 59.248 50.000 14.75 0.00 0.00 2.62
229 230 2.795329 CCAAGCAAGCCTAGGAAGAAA 58.205 47.619 14.75 0.00 0.00 2.52
232 233 0.034670 AGCCAAGCAAGCCTAGGAAG 60.035 55.000 14.75 1.66 0.00 3.46
233 234 0.035056 GAGCCAAGCAAGCCTAGGAA 60.035 55.000 14.75 0.00 0.00 3.36
234 235 1.604378 GAGCCAAGCAAGCCTAGGA 59.396 57.895 14.75 0.00 0.00 2.94
235 236 1.817099 CGAGCCAAGCAAGCCTAGG 60.817 63.158 3.67 3.67 0.00 3.02
236 237 1.086634 GTCGAGCCAAGCAAGCCTAG 61.087 60.000 0.00 0.00 0.00 3.02
237 238 1.079127 GTCGAGCCAAGCAAGCCTA 60.079 57.895 0.00 0.00 0.00 3.93
239 240 3.435186 GGTCGAGCCAAGCAAGCC 61.435 66.667 2.39 0.00 37.17 4.35
240 241 2.669569 TGGTCGAGCCAAGCAAGC 60.670 61.111 12.85 0.00 45.94 4.01
247 248 2.279851 CGTGTTGTGGTCGAGCCA 60.280 61.111 12.85 7.40 46.95 4.75
248 249 3.712881 GCGTGTTGTGGTCGAGCC 61.713 66.667 12.85 4.60 37.90 4.70
250 251 0.315869 GTTTGCGTGTTGTGGTCGAG 60.316 55.000 0.00 0.00 0.00 4.04
251 252 1.019805 TGTTTGCGTGTTGTGGTCGA 61.020 50.000 0.00 0.00 0.00 4.20
252 253 0.859788 GTGTTTGCGTGTTGTGGTCG 60.860 55.000 0.00 0.00 0.00 4.79
253 254 0.524604 GGTGTTTGCGTGTTGTGGTC 60.525 55.000 0.00 0.00 0.00 4.02
256 257 0.859788 GTCGGTGTTTGCGTGTTGTG 60.860 55.000 0.00 0.00 0.00 3.33
258 259 1.298041 GGTCGGTGTTTGCGTGTTG 60.298 57.895 0.00 0.00 0.00 3.33
260 261 2.125065 TGGTCGGTGTTTGCGTGT 60.125 55.556 0.00 0.00 0.00 4.49
261 262 2.177580 ACTGGTCGGTGTTTGCGTG 61.178 57.895 0.00 0.00 0.00 5.34
262 263 2.177580 CACTGGTCGGTGTTTGCGT 61.178 57.895 1.96 0.00 33.04 5.24
263 264 2.631428 CACTGGTCGGTGTTTGCG 59.369 61.111 1.96 0.00 33.04 4.85
264 265 3.030652 CCACTGGTCGGTGTTTGC 58.969 61.111 8.85 0.00 35.63 3.68
265 266 2.892334 CGCCACTGGTCGGTGTTTG 61.892 63.158 8.85 0.00 35.63 2.93
274 275 4.927782 TTTGCGAGCGCCACTGGT 62.928 61.111 12.70 0.00 41.09 4.00
275 276 4.093952 CTTTGCGAGCGCCACTGG 62.094 66.667 12.70 0.00 41.09 4.00
276 277 2.027073 TACTTTGCGAGCGCCACTG 61.027 57.895 12.70 2.96 41.09 3.66
277 278 2.027625 GTACTTTGCGAGCGCCACT 61.028 57.895 12.70 0.00 41.09 4.00
279 280 1.736645 GAGTACTTTGCGAGCGCCA 60.737 57.895 12.70 0.00 41.09 5.69
280 281 2.453638 GGAGTACTTTGCGAGCGCC 61.454 63.158 12.70 0.00 41.09 6.53
281 282 2.453638 GGGAGTACTTTGCGAGCGC 61.454 63.158 8.08 8.08 42.35 5.92
282 283 0.802607 GAGGGAGTACTTTGCGAGCG 60.803 60.000 0.00 0.00 0.00 5.03
283 284 0.460459 GGAGGGAGTACTTTGCGAGC 60.460 60.000 0.00 0.00 0.00 5.03
284 285 0.895530 TGGAGGGAGTACTTTGCGAG 59.104 55.000 0.00 0.00 0.00 5.03
285 286 1.568504 ATGGAGGGAGTACTTTGCGA 58.431 50.000 0.00 0.00 0.00 5.10
286 287 2.280628 GAATGGAGGGAGTACTTTGCG 58.719 52.381 0.00 0.00 0.00 4.85
287 288 2.239907 AGGAATGGAGGGAGTACTTTGC 59.760 50.000 0.00 0.00 0.00 3.68
288 289 5.693769 TTAGGAATGGAGGGAGTACTTTG 57.306 43.478 0.00 0.00 0.00 2.77
289 290 6.217693 ACATTTAGGAATGGAGGGAGTACTTT 59.782 38.462 0.00 0.00 45.56 2.66
290 291 5.731678 ACATTTAGGAATGGAGGGAGTACTT 59.268 40.000 0.00 0.00 45.56 2.24
291 292 5.289510 ACATTTAGGAATGGAGGGAGTACT 58.710 41.667 0.00 0.00 45.56 2.73
292 293 5.632034 ACATTTAGGAATGGAGGGAGTAC 57.368 43.478 4.39 0.00 45.56 2.73
293 294 7.070821 GTCTTACATTTAGGAATGGAGGGAGTA 59.929 40.741 4.39 0.00 45.56 2.59
294 295 5.970640 TCTTACATTTAGGAATGGAGGGAGT 59.029 40.000 4.39 0.00 45.56 3.85
295 296 6.100424 AGTCTTACATTTAGGAATGGAGGGAG 59.900 42.308 4.39 0.00 45.56 4.30
296 297 5.970640 AGTCTTACATTTAGGAATGGAGGGA 59.029 40.000 4.39 0.00 45.56 4.20
298 299 8.581253 AAAAGTCTTACATTTAGGAATGGAGG 57.419 34.615 4.39 0.00 45.56 4.30
316 317 8.451748 GTCCGCATTAAAATCTCTAAAAAGTCT 58.548 33.333 0.00 0.00 0.00 3.24
317 318 8.451748 AGTCCGCATTAAAATCTCTAAAAAGTC 58.548 33.333 0.00 0.00 0.00 3.01
318 319 8.336801 AGTCCGCATTAAAATCTCTAAAAAGT 57.663 30.769 0.00 0.00 0.00 2.66
319 320 9.704098 GTAGTCCGCATTAAAATCTCTAAAAAG 57.296 33.333 0.00 0.00 0.00 2.27
322 323 8.958119 ATGTAGTCCGCATTAAAATCTCTAAA 57.042 30.769 0.00 0.00 0.00 1.85
323 324 9.472361 GTATGTAGTCCGCATTAAAATCTCTAA 57.528 33.333 0.00 0.00 0.00 2.10
325 326 6.641314 CGTATGTAGTCCGCATTAAAATCTCT 59.359 38.462 0.00 0.00 0.00 3.10
326 327 6.128902 CCGTATGTAGTCCGCATTAAAATCTC 60.129 42.308 0.00 0.00 0.00 2.75
328 329 5.693104 TCCGTATGTAGTCCGCATTAAAATC 59.307 40.000 0.00 0.00 0.00 2.17
329 330 5.603596 TCCGTATGTAGTCCGCATTAAAAT 58.396 37.500 0.00 0.00 0.00 1.82
331 332 4.613944 CTCCGTATGTAGTCCGCATTAAA 58.386 43.478 0.00 0.00 0.00 1.52
332 333 3.551454 GCTCCGTATGTAGTCCGCATTAA 60.551 47.826 0.00 0.00 0.00 1.40
333 334 2.030540 GCTCCGTATGTAGTCCGCATTA 60.031 50.000 0.00 0.00 0.00 1.90
335 336 0.314302 GCTCCGTATGTAGTCCGCAT 59.686 55.000 0.00 0.00 0.00 4.73
336 337 1.033202 TGCTCCGTATGTAGTCCGCA 61.033 55.000 0.00 0.00 0.00 5.69
337 338 0.101759 TTGCTCCGTATGTAGTCCGC 59.898 55.000 0.00 0.00 0.00 5.54
338 339 2.572191 TTTGCTCCGTATGTAGTCCG 57.428 50.000 0.00 0.00 0.00 4.79
339 340 4.439057 TCATTTTGCTCCGTATGTAGTCC 58.561 43.478 0.00 0.00 0.00 3.85
340 341 5.005779 CACTCATTTTGCTCCGTATGTAGTC 59.994 44.000 0.00 0.00 0.00 2.59
342 343 5.109210 TCACTCATTTTGCTCCGTATGTAG 58.891 41.667 0.00 0.00 0.00 2.74
346 347 5.431765 AGATTCACTCATTTTGCTCCGTAT 58.568 37.500 0.00 0.00 0.00 3.06
348 349 3.679389 AGATTCACTCATTTTGCTCCGT 58.321 40.909 0.00 0.00 0.00 4.69
349 350 4.631377 TGTAGATTCACTCATTTTGCTCCG 59.369 41.667 0.00 0.00 0.00 4.63
351 352 6.734104 AGTGTAGATTCACTCATTTTGCTC 57.266 37.500 0.00 0.00 44.07 4.26
381 382 9.128404 GGATCCATACGGTTGTATATAGACATA 57.872 37.037 6.95 0.00 39.28 2.29
382 383 7.839705 AGGATCCATACGGTTGTATATAGACAT 59.160 37.037 15.82 0.00 39.28 3.06
384 385 7.338703 TCAGGATCCATACGGTTGTATATAGAC 59.661 40.741 15.82 0.00 39.28 2.59
386 387 7.640597 TCAGGATCCATACGGTTGTATATAG 57.359 40.000 15.82 0.00 39.28 1.31
388 389 7.201794 CGTATCAGGATCCATACGGTTGTATAT 60.202 40.741 26.02 5.28 42.67 0.86
389 390 6.094464 CGTATCAGGATCCATACGGTTGTATA 59.906 42.308 26.02 8.74 42.67 1.47
390 391 5.105877 CGTATCAGGATCCATACGGTTGTAT 60.106 44.000 26.02 9.45 42.67 2.29
391 392 4.216902 CGTATCAGGATCCATACGGTTGTA 59.783 45.833 26.02 5.43 42.67 2.41
392 393 3.005472 CGTATCAGGATCCATACGGTTGT 59.995 47.826 26.02 6.17 42.67 3.32
393 394 3.254903 TCGTATCAGGATCCATACGGTTG 59.745 47.826 29.83 14.30 45.19 3.77
394 395 3.493334 TCGTATCAGGATCCATACGGTT 58.507 45.455 29.83 3.60 45.19 4.44
395 396 3.150458 TCGTATCAGGATCCATACGGT 57.850 47.619 29.83 11.52 45.19 4.83
396 397 4.486090 CTTTCGTATCAGGATCCATACGG 58.514 47.826 29.83 18.06 45.19 4.02
397 398 3.921021 GCTTTCGTATCAGGATCCATACG 59.079 47.826 27.06 27.06 46.06 3.06
400 401 2.705658 TGGCTTTCGTATCAGGATCCAT 59.294 45.455 15.82 1.70 0.00 3.41
439 440 3.305539 GCTGATTTTGTCTGGATGCAACA 60.306 43.478 0.00 0.00 0.00 3.33
511 512 4.723248 GCAAACACTGGCAGATAGTTAAC 58.277 43.478 23.66 13.19 0.00 2.01
566 700 8.699283 ACATTACATTACTAGAGACCGAAAAC 57.301 34.615 0.00 0.00 0.00 2.43
622 757 5.242838 CCAGCTTTTACCCATCTGTTTACAA 59.757 40.000 0.00 0.00 0.00 2.41
953 3408 2.290323 GCTACCAAGGAGGAAGAAAGCA 60.290 50.000 0.00 0.00 41.22 3.91
1257 4081 0.387878 GATACGCTCGCCATCCTCAG 60.388 60.000 0.00 0.00 0.00 3.35
1258 4082 1.106944 TGATACGCTCGCCATCCTCA 61.107 55.000 0.00 0.00 0.00 3.86
1374 4198 6.632445 GCAACCATATCCCCAAGCTAAAAATT 60.632 38.462 0.00 0.00 0.00 1.82
1520 4349 6.260050 CACGGTTCCTATACTATTGCACAATT 59.740 38.462 0.47 0.00 32.50 2.32
1542 4383 3.541711 GTGAAGAACCGAAACAATCACG 58.458 45.455 0.00 0.00 0.00 4.35
1733 4580 3.364964 CCAGAAGTGGCACAAATACGAAC 60.365 47.826 21.41 0.29 44.16 3.95
2033 4901 9.831737 CTGTTTGTCTGACCTAAATCATAAAAG 57.168 33.333 5.17 0.00 0.00 2.27
2151 5060 8.984855 AGATCCAAATCATCAAATGGTAACAAT 58.015 29.630 0.00 0.00 42.14 2.71
2322 5249 4.558860 GCTATTTTTGAGCCGTTTGATGTC 59.441 41.667 0.00 0.00 33.60 3.06
2340 5267 8.635765 TTAAAAAGGAGATGTGAAGTGCTATT 57.364 30.769 0.00 0.00 0.00 1.73
2480 5422 6.054941 TGTGTGCGGAACATATTGATAGATT 58.945 36.000 0.00 0.00 41.97 2.40
2611 5559 2.229792 TGCAGTGGAACATGTTTCTCC 58.770 47.619 17.76 12.72 44.52 3.71
2612 5560 4.697352 AGTATGCAGTGGAACATGTTTCTC 59.303 41.667 17.76 13.99 44.52 2.87
2613 5561 4.655963 AGTATGCAGTGGAACATGTTTCT 58.344 39.130 17.76 11.26 44.52 2.52
2614 5562 4.697352 AGAGTATGCAGTGGAACATGTTTC 59.303 41.667 13.36 11.71 44.52 2.78
2615 5563 4.655963 AGAGTATGCAGTGGAACATGTTT 58.344 39.130 13.36 0.00 44.52 2.83
2616 5564 4.019860 AGAGAGTATGCAGTGGAACATGTT 60.020 41.667 11.78 11.78 44.52 2.71
2617 5565 3.517100 AGAGAGTATGCAGTGGAACATGT 59.483 43.478 0.00 0.00 44.52 3.21
2618 5566 4.134379 AGAGAGTATGCAGTGGAACATG 57.866 45.455 0.00 0.00 44.52 3.21
2619 5567 4.833478 AAGAGAGTATGCAGTGGAACAT 57.167 40.909 0.00 0.00 44.52 2.71
2620 5568 4.623932 AAAGAGAGTATGCAGTGGAACA 57.376 40.909 0.00 0.00 41.43 3.18
2621 5569 6.019479 CGATAAAAGAGAGTATGCAGTGGAAC 60.019 42.308 0.00 0.00 0.00 3.62
2622 5570 6.042777 CGATAAAAGAGAGTATGCAGTGGAA 58.957 40.000 0.00 0.00 0.00 3.53
2623 5571 5.127194 ACGATAAAAGAGAGTATGCAGTGGA 59.873 40.000 0.00 0.00 0.00 4.02
2624 5572 5.352284 ACGATAAAAGAGAGTATGCAGTGG 58.648 41.667 0.00 0.00 0.00 4.00
2625 5573 6.020281 GTGACGATAAAAGAGAGTATGCAGTG 60.020 42.308 0.00 0.00 0.00 3.66
2626 5574 6.037098 GTGACGATAAAAGAGAGTATGCAGT 58.963 40.000 0.00 0.00 0.00 4.40
2627 5575 6.036470 TGTGACGATAAAAGAGAGTATGCAG 58.964 40.000 0.00 0.00 0.00 4.41
2628 5576 5.961272 TGTGACGATAAAAGAGAGTATGCA 58.039 37.500 0.00 0.00 0.00 3.96
2629 5577 6.310467 TGTTGTGACGATAAAAGAGAGTATGC 59.690 38.462 0.00 0.00 0.00 3.14
2630 5578 7.812309 TGTTGTGACGATAAAAGAGAGTATG 57.188 36.000 0.00 0.00 0.00 2.39
2631 5579 9.088512 GAATGTTGTGACGATAAAAGAGAGTAT 57.911 33.333 0.00 0.00 0.00 2.12
2632 5580 8.304596 AGAATGTTGTGACGATAAAAGAGAGTA 58.695 33.333 0.00 0.00 0.00 2.59
2633 5581 7.116948 CAGAATGTTGTGACGATAAAAGAGAGT 59.883 37.037 0.00 0.00 0.00 3.24
2634 5582 7.451429 CAGAATGTTGTGACGATAAAAGAGAG 58.549 38.462 0.00 0.00 0.00 3.20
2635 5583 7.351414 CAGAATGTTGTGACGATAAAAGAGA 57.649 36.000 0.00 0.00 0.00 3.10
2653 5601 5.444663 TCTCCGATCTATGTCACAGAATG 57.555 43.478 0.00 0.00 46.00 2.67
2654 5602 6.127338 TGTTTCTCCGATCTATGTCACAGAAT 60.127 38.462 0.00 0.00 0.00 2.40
2655 5603 5.185056 TGTTTCTCCGATCTATGTCACAGAA 59.815 40.000 0.00 0.00 0.00 3.02
2656 5604 4.705023 TGTTTCTCCGATCTATGTCACAGA 59.295 41.667 0.00 0.00 0.00 3.41
2657 5605 4.998788 TGTTTCTCCGATCTATGTCACAG 58.001 43.478 0.00 0.00 0.00 3.66
2658 5606 5.105351 ACATGTTTCTCCGATCTATGTCACA 60.105 40.000 0.00 0.00 0.00 3.58
2659 5607 5.352284 ACATGTTTCTCCGATCTATGTCAC 58.648 41.667 0.00 0.00 0.00 3.67
2660 5608 5.598416 ACATGTTTCTCCGATCTATGTCA 57.402 39.130 0.00 0.00 0.00 3.58
2661 5609 5.463724 GGAACATGTTTCTCCGATCTATGTC 59.536 44.000 13.36 0.00 0.00 3.06
2662 5610 5.104941 TGGAACATGTTTCTCCGATCTATGT 60.105 40.000 17.76 0.00 31.37 2.29
2663 5611 5.235186 GTGGAACATGTTTCTCCGATCTATG 59.765 44.000 17.76 0.00 44.52 2.23
2664 5612 5.129485 AGTGGAACATGTTTCTCCGATCTAT 59.871 40.000 17.76 0.00 44.52 1.98
2665 5613 4.466370 AGTGGAACATGTTTCTCCGATCTA 59.534 41.667 17.76 0.00 44.52 1.98
2666 5614 3.261897 AGTGGAACATGTTTCTCCGATCT 59.738 43.478 17.76 9.19 44.52 2.75
2667 5615 3.372206 CAGTGGAACATGTTTCTCCGATC 59.628 47.826 17.76 7.33 44.52 3.69
2668 5616 3.338249 CAGTGGAACATGTTTCTCCGAT 58.662 45.455 17.76 2.67 44.52 4.18
2669 5617 2.766313 CAGTGGAACATGTTTCTCCGA 58.234 47.619 17.76 0.00 44.52 4.55
2670 5618 1.197721 GCAGTGGAACATGTTTCTCCG 59.802 52.381 17.76 7.98 44.52 4.63
2734 5682 6.202954 CGAATGGGATAAGTTGACCTGAATAC 59.797 42.308 0.00 0.00 0.00 1.89
2749 5697 7.834881 ACTATCAACTAGTTCGAATGGGATA 57.165 36.000 4.77 7.18 37.39 2.59
2983 5936 9.412460 TGAAAGTGCTAATCCAAGATAAATGAT 57.588 29.630 0.00 0.00 0.00 2.45
3336 6336 7.224753 GTGTGACATAATGATACAAGGTACTGG 59.775 40.741 0.00 0.00 40.86 4.00
3538 6542 0.534203 TCAGTGGAGTCGCCCAAAAC 60.534 55.000 0.00 0.00 38.06 2.43
3634 6639 6.049149 ACATTCATGGAATAGTGTTCCTACG 58.951 40.000 18.37 7.90 39.31 3.51
3905 7043 5.221303 CCCATTACAATTTGCCTCCATAGTG 60.221 44.000 0.00 0.00 0.00 2.74
3970 7138 6.828502 TGTAAATAATTAGCAGCTCACGAG 57.171 37.500 0.00 0.00 0.00 4.18
3973 7141 9.278734 GAAACTTGTAAATAATTAGCAGCTCAC 57.721 33.333 0.00 0.00 0.00 3.51
4260 7430 4.997395 ACTGCATTCGTCTCATTAACAAGT 59.003 37.500 0.00 0.00 0.00 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.