Multiple sequence alignment - TraesCS6D01G022000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G022000 chr6D 100.000 3146 0 0 1 3146 8579912 8576767 0.000000e+00 5810.0
1 TraesCS6D01G022000 chr6D 85.088 456 50 12 2648 3088 34019364 34019816 1.720000e-122 449.0
2 TraesCS6D01G022000 chr6D 90.833 120 11 0 2535 2654 34019219 34019338 9.030000e-36 161.0
3 TraesCS6D01G022000 chr2B 86.461 2201 243 39 930 3081 89494546 89496740 0.000000e+00 2362.0
4 TraesCS6D01G022000 chr2B 87.579 1900 216 12 1254 3146 709487505 709485619 0.000000e+00 2183.0
5 TraesCS6D01G022000 chr2B 86.237 1257 160 6 896 2151 711161327 711162571 0.000000e+00 1351.0
6 TraesCS6D01G022000 chr2B 87.280 1195 127 10 994 2171 89499950 89501136 0.000000e+00 1341.0
7 TraesCS6D01G022000 chr2B 84.112 749 58 18 9 709 18638046 18638781 0.000000e+00 667.0
8 TraesCS6D01G022000 chr6B 85.821 2137 241 40 997 3088 15249503 15247384 0.000000e+00 2211.0
9 TraesCS6D01G022000 chr6B 82.310 1628 253 24 1043 2654 670602128 670600520 0.000000e+00 1378.0
10 TraesCS6D01G022000 chr6B 87.832 1093 118 7 1353 2439 16255620 16256703 0.000000e+00 1267.0
11 TraesCS6D01G022000 chr6B 83.502 1285 168 14 896 2153 15715321 15714054 0.000000e+00 1158.0
12 TraesCS6D01G022000 chr6B 85.745 919 128 1 1074 1989 16320666 16321584 0.000000e+00 968.0
13 TraesCS6D01G022000 chr6B 89.233 743 25 10 12 710 255202682 255203413 0.000000e+00 878.0
14 TraesCS6D01G022000 chr6B 82.619 886 115 22 1779 2654 53075837 53074981 0.000000e+00 747.0
15 TraesCS6D01G022000 chr6B 87.140 451 46 6 2650 3088 53074954 53074504 4.680000e-138 501.0
16 TraesCS6D01G022000 chr6B 80.499 441 58 22 2667 3088 670576966 670576535 2.360000e-81 313.0
17 TraesCS6D01G022000 chr6A 90.891 1504 106 18 953 2439 30560615 30559126 0.000000e+00 1989.0
18 TraesCS6D01G022000 chr6A 92.958 355 20 5 2305 2655 9366103 9366456 2.160000e-141 512.0
19 TraesCS6D01G022000 chr6A 88.542 384 35 5 2706 3081 9366471 9366853 1.030000e-124 457.0
20 TraesCS6D01G022000 chr6A 79.743 622 89 22 2469 3072 8993701 8993099 1.750000e-112 416.0
21 TraesCS6D01G022000 chr2D 86.704 1256 155 5 896 2151 588162192 588163435 0.000000e+00 1384.0
22 TraesCS6D01G022000 chr3B 83.036 1120 172 11 1043 2153 778342845 778341735 0.000000e+00 1000.0
23 TraesCS6D01G022000 chr3D 84.906 954 130 6 1043 1989 582879902 582880848 0.000000e+00 952.0
24 TraesCS6D01G022000 chr5D 78.714 1400 246 26 1271 2655 42073883 42075245 0.000000e+00 887.0
25 TraesCS6D01G022000 chr5D 78.579 957 179 20 1500 2443 499862087 499861144 2.680000e-170 608.0
26 TraesCS6D01G022000 chr5D 85.321 327 31 7 2650 2968 499860702 499860385 3.910000e-84 322.0
27 TraesCS6D01G022000 chr5D 87.342 79 8 2 77 153 499223968 499224046 4.320000e-14 89.8
28 TraesCS6D01G022000 chrUn 78.485 1399 252 36 1219 2588 65790534 65789156 0.000000e+00 870.0
29 TraesCS6D01G022000 chr5B 79.206 957 173 20 1500 2443 621235482 621234539 2.650000e-180 641.0
30 TraesCS6D01G022000 chr5B 86.306 314 32 5 2661 2968 621234083 621233775 6.500000e-87 331.0
31 TraesCS6D01G022000 chr2A 82.275 756 66 23 9 709 475771684 475772426 2.700000e-165 592.0
32 TraesCS6D01G022000 chr5A 84.848 330 33 8 2650 2968 624201358 624201035 1.820000e-82 316.0
33 TraesCS6D01G022000 chr5A 84.946 93 9 4 77 165 623490793 623490884 4.320000e-14 89.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G022000 chr6D 8576767 8579912 3145 True 5810.0 5810 100.0000 1 3146 1 chr6D.!!$R1 3145
1 TraesCS6D01G022000 chr6D 34019219 34019816 597 False 305.0 449 87.9605 2535 3088 2 chr6D.!!$F1 553
2 TraesCS6D01G022000 chr2B 709485619 709487505 1886 True 2183.0 2183 87.5790 1254 3146 1 chr2B.!!$R1 1892
3 TraesCS6D01G022000 chr2B 89494546 89501136 6590 False 1851.5 2362 86.8705 930 3081 2 chr2B.!!$F3 2151
4 TraesCS6D01G022000 chr2B 711161327 711162571 1244 False 1351.0 1351 86.2370 896 2151 1 chr2B.!!$F2 1255
5 TraesCS6D01G022000 chr2B 18638046 18638781 735 False 667.0 667 84.1120 9 709 1 chr2B.!!$F1 700
6 TraesCS6D01G022000 chr6B 15247384 15249503 2119 True 2211.0 2211 85.8210 997 3088 1 chr6B.!!$R1 2091
7 TraesCS6D01G022000 chr6B 670600520 670602128 1608 True 1378.0 1378 82.3100 1043 2654 1 chr6B.!!$R4 1611
8 TraesCS6D01G022000 chr6B 16255620 16256703 1083 False 1267.0 1267 87.8320 1353 2439 1 chr6B.!!$F1 1086
9 TraesCS6D01G022000 chr6B 15714054 15715321 1267 True 1158.0 1158 83.5020 896 2153 1 chr6B.!!$R2 1257
10 TraesCS6D01G022000 chr6B 16320666 16321584 918 False 968.0 968 85.7450 1074 1989 1 chr6B.!!$F2 915
11 TraesCS6D01G022000 chr6B 255202682 255203413 731 False 878.0 878 89.2330 12 710 1 chr6B.!!$F3 698
12 TraesCS6D01G022000 chr6B 53074504 53075837 1333 True 624.0 747 84.8795 1779 3088 2 chr6B.!!$R5 1309
13 TraesCS6D01G022000 chr6A 30559126 30560615 1489 True 1989.0 1989 90.8910 953 2439 1 chr6A.!!$R2 1486
14 TraesCS6D01G022000 chr6A 9366103 9366853 750 False 484.5 512 90.7500 2305 3081 2 chr6A.!!$F1 776
15 TraesCS6D01G022000 chr6A 8993099 8993701 602 True 416.0 416 79.7430 2469 3072 1 chr6A.!!$R1 603
16 TraesCS6D01G022000 chr2D 588162192 588163435 1243 False 1384.0 1384 86.7040 896 2151 1 chr2D.!!$F1 1255
17 TraesCS6D01G022000 chr3B 778341735 778342845 1110 True 1000.0 1000 83.0360 1043 2153 1 chr3B.!!$R1 1110
18 TraesCS6D01G022000 chr3D 582879902 582880848 946 False 952.0 952 84.9060 1043 1989 1 chr3D.!!$F1 946
19 TraesCS6D01G022000 chr5D 42073883 42075245 1362 False 887.0 887 78.7140 1271 2655 1 chr5D.!!$F1 1384
20 TraesCS6D01G022000 chr5D 499860385 499862087 1702 True 465.0 608 81.9500 1500 2968 2 chr5D.!!$R1 1468
21 TraesCS6D01G022000 chrUn 65789156 65790534 1378 True 870.0 870 78.4850 1219 2588 1 chrUn.!!$R1 1369
22 TraesCS6D01G022000 chr5B 621233775 621235482 1707 True 486.0 641 82.7560 1500 2968 2 chr5B.!!$R1 1468
23 TraesCS6D01G022000 chr2A 475771684 475772426 742 False 592.0 592 82.2750 9 709 1 chr2A.!!$F1 700

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
139 141 0.031994 GGTGCGAGCAAACCAACAAT 59.968 50.0 0.0 0.0 36.41 2.71 F
228 230 0.035630 AAGCAAGCTGAATCTCCGCT 60.036 50.0 0.0 0.0 35.09 5.52 F
1551 1622 0.035458 CCAACGTCTCCTTCCTGCTT 59.965 55.0 0.0 0.0 0.00 3.91 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1430 1498 0.393132 GAAGAGGGGCAAGCAGTACC 60.393 60.000 0.0 0.0 0.00 3.34 R
1822 7255 1.079750 GCAAGTCCTCGGACCTCAC 60.080 63.158 12.3 0.0 45.59 3.51 R
3104 9046 2.114616 GGGACACACCTCAGATCTCAT 58.885 52.381 0.0 0.0 38.98 2.90 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 42 6.973843 GCAAATGATATGTAGATGCCAAGAA 58.026 36.000 0.00 0.00 0.00 2.52
55 56 1.839994 CCAAGAACATGGCTAGAGGGA 59.160 52.381 0.00 0.00 32.78 4.20
84 85 7.979537 CCTTTTTAATTTTACCCCATAGCTGTC 59.020 37.037 0.00 0.00 0.00 3.51
122 124 3.657350 CCACCGGTGGGGAATGGT 61.657 66.667 41.16 0.00 46.81 3.55
123 125 2.361104 CACCGGTGGGGAATGGTG 60.361 66.667 27.57 0.00 45.17 4.17
124 126 4.360405 ACCGGTGGGGAATGGTGC 62.360 66.667 6.12 0.00 39.97 5.01
126 128 4.402528 CGGTGGGGAATGGTGCGA 62.403 66.667 0.00 0.00 0.00 5.10
127 129 2.438434 GGTGGGGAATGGTGCGAG 60.438 66.667 0.00 0.00 0.00 5.03
128 130 3.134127 GTGGGGAATGGTGCGAGC 61.134 66.667 0.00 0.00 0.00 5.03
129 131 3.645660 TGGGGAATGGTGCGAGCA 61.646 61.111 0.00 0.00 0.00 4.26
130 132 2.361104 GGGGAATGGTGCGAGCAA 60.361 61.111 0.00 0.00 0.00 3.91
131 133 1.976474 GGGGAATGGTGCGAGCAAA 60.976 57.895 0.00 0.00 0.00 3.68
132 134 1.212751 GGGAATGGTGCGAGCAAAC 59.787 57.895 0.00 0.00 0.00 2.93
133 135 1.212751 GGAATGGTGCGAGCAAACC 59.787 57.895 0.00 0.00 36.96 3.27
136 138 3.115556 TGGTGCGAGCAAACCAAC 58.884 55.556 0.00 0.00 43.46 3.77
137 139 1.750780 TGGTGCGAGCAAACCAACA 60.751 52.632 0.00 0.00 43.46 3.33
138 140 1.315981 TGGTGCGAGCAAACCAACAA 61.316 50.000 0.00 0.00 43.46 2.83
139 141 0.031994 GGTGCGAGCAAACCAACAAT 59.968 50.000 0.00 0.00 36.41 2.71
140 142 1.268352 GGTGCGAGCAAACCAACAATA 59.732 47.619 0.00 0.00 36.41 1.90
141 143 2.315901 GTGCGAGCAAACCAACAATAC 58.684 47.619 0.00 0.00 0.00 1.89
142 144 1.950216 TGCGAGCAAACCAACAATACA 59.050 42.857 0.00 0.00 0.00 2.29
143 145 2.031245 TGCGAGCAAACCAACAATACAG 60.031 45.455 0.00 0.00 0.00 2.74
144 146 2.668279 GCGAGCAAACCAACAATACAGG 60.668 50.000 0.00 0.00 0.00 4.00
145 147 2.552315 CGAGCAAACCAACAATACAGGT 59.448 45.455 0.00 0.00 37.20 4.00
146 148 3.609175 CGAGCAAACCAACAATACAGGTG 60.609 47.826 0.00 0.00 35.42 4.00
147 149 3.295973 AGCAAACCAACAATACAGGTGT 58.704 40.909 0.00 0.00 35.42 4.16
148 150 3.068024 AGCAAACCAACAATACAGGTGTG 59.932 43.478 0.00 0.00 42.39 3.82
149 151 3.181480 GCAAACCAACAATACAGGTGTGT 60.181 43.478 0.00 0.00 41.69 3.72
150 152 4.606961 CAAACCAACAATACAGGTGTGTC 58.393 43.478 0.00 0.00 36.18 3.67
151 153 3.569194 ACCAACAATACAGGTGTGTCA 57.431 42.857 0.00 0.00 38.19 3.58
152 154 3.892284 ACCAACAATACAGGTGTGTCAA 58.108 40.909 0.00 0.00 38.19 3.18
153 155 3.630312 ACCAACAATACAGGTGTGTCAAC 59.370 43.478 0.00 0.00 38.19 3.18
154 156 3.004315 CCAACAATACAGGTGTGTCAACC 59.996 47.826 0.00 0.00 38.19 3.77
155 157 3.569194 ACAATACAGGTGTGTCAACCA 57.431 42.857 6.87 0.00 43.20 3.67
156 158 3.892284 ACAATACAGGTGTGTCAACCAA 58.108 40.909 6.87 0.00 43.20 3.67
157 159 4.469657 ACAATACAGGTGTGTCAACCAAT 58.530 39.130 6.87 0.00 43.20 3.16
158 160 4.278170 ACAATACAGGTGTGTCAACCAATG 59.722 41.667 6.87 1.55 43.20 2.82
159 161 2.435372 ACAGGTGTGTCAACCAATGT 57.565 45.000 6.87 2.02 43.20 2.71
160 162 2.733956 ACAGGTGTGTCAACCAATGTT 58.266 42.857 6.87 0.00 43.20 2.71
161 163 2.687935 ACAGGTGTGTCAACCAATGTTC 59.312 45.455 6.87 0.00 43.20 3.18
162 164 2.951642 CAGGTGTGTCAACCAATGTTCT 59.048 45.455 6.87 0.00 43.20 3.01
163 165 3.381272 CAGGTGTGTCAACCAATGTTCTT 59.619 43.478 6.87 0.00 43.20 2.52
164 166 3.381272 AGGTGTGTCAACCAATGTTCTTG 59.619 43.478 6.87 0.00 43.20 3.02
165 167 3.380004 GGTGTGTCAACCAATGTTCTTGA 59.620 43.478 0.00 0.00 40.22 3.02
166 168 4.037923 GGTGTGTCAACCAATGTTCTTGAT 59.962 41.667 0.00 0.00 40.22 2.57
167 169 5.240623 GGTGTGTCAACCAATGTTCTTGATA 59.759 40.000 0.00 0.00 40.22 2.15
168 170 6.071952 GGTGTGTCAACCAATGTTCTTGATAT 60.072 38.462 0.00 0.00 40.22 1.63
169 171 6.803320 GTGTGTCAACCAATGTTCTTGATATG 59.197 38.462 0.00 0.00 30.42 1.78
170 172 6.489700 TGTGTCAACCAATGTTCTTGATATGT 59.510 34.615 0.00 0.00 30.42 2.29
171 173 7.663493 TGTGTCAACCAATGTTCTTGATATGTA 59.337 33.333 0.00 0.00 30.42 2.29
172 174 7.962918 GTGTCAACCAATGTTCTTGATATGTAC 59.037 37.037 0.00 0.00 30.42 2.90
173 175 7.663493 TGTCAACCAATGTTCTTGATATGTACA 59.337 33.333 0.00 0.00 30.42 2.90
174 176 8.511321 GTCAACCAATGTTCTTGATATGTACAA 58.489 33.333 0.00 0.00 30.42 2.41
175 177 8.729756 TCAACCAATGTTCTTGATATGTACAAG 58.270 33.333 0.00 0.00 43.92 3.16
176 178 7.088589 ACCAATGTTCTTGATATGTACAAGC 57.911 36.000 0.00 0.00 42.76 4.01
177 179 6.886459 ACCAATGTTCTTGATATGTACAAGCT 59.114 34.615 0.00 0.00 42.76 3.74
178 180 7.148188 ACCAATGTTCTTGATATGTACAAGCTG 60.148 37.037 0.00 0.00 42.76 4.24
179 181 7.066163 CCAATGTTCTTGATATGTACAAGCTGA 59.934 37.037 0.00 0.00 42.76 4.26
180 182 8.453320 CAATGTTCTTGATATGTACAAGCTGAA 58.547 33.333 0.00 0.00 42.76 3.02
181 183 8.743085 ATGTTCTTGATATGTACAAGCTGAAT 57.257 30.769 0.00 0.00 42.76 2.57
182 184 8.565896 TGTTCTTGATATGTACAAGCTGAATT 57.434 30.769 0.00 0.00 42.76 2.17
183 185 9.013229 TGTTCTTGATATGTACAAGCTGAATTT 57.987 29.630 0.00 0.00 42.76 1.82
184 186 9.495754 GTTCTTGATATGTACAAGCTGAATTTC 57.504 33.333 0.00 0.00 42.76 2.17
185 187 7.909267 TCTTGATATGTACAAGCTGAATTTCG 58.091 34.615 0.00 0.00 42.76 3.46
186 188 7.549134 TCTTGATATGTACAAGCTGAATTTCGT 59.451 33.333 0.00 0.00 42.76 3.85
187 189 7.609760 TGATATGTACAAGCTGAATTTCGTT 57.390 32.000 0.00 0.00 0.00 3.85
188 190 8.039603 TGATATGTACAAGCTGAATTTCGTTT 57.960 30.769 0.00 0.00 0.00 3.60
189 191 8.175069 TGATATGTACAAGCTGAATTTCGTTTC 58.825 33.333 0.00 0.00 0.00 2.78
190 192 6.560253 ATGTACAAGCTGAATTTCGTTTCT 57.440 33.333 0.00 0.00 0.00 2.52
191 193 5.985781 TGTACAAGCTGAATTTCGTTTCTC 58.014 37.500 0.00 0.00 0.00 2.87
192 194 4.489679 ACAAGCTGAATTTCGTTTCTCC 57.510 40.909 0.00 0.00 0.00 3.71
193 195 3.253432 ACAAGCTGAATTTCGTTTCTCCC 59.747 43.478 0.00 0.00 0.00 4.30
194 196 3.140325 AGCTGAATTTCGTTTCTCCCA 57.860 42.857 0.00 0.00 0.00 4.37
195 197 3.690460 AGCTGAATTTCGTTTCTCCCAT 58.310 40.909 0.00 0.00 0.00 4.00
196 198 3.441572 AGCTGAATTTCGTTTCTCCCATG 59.558 43.478 0.00 0.00 0.00 3.66
197 199 3.191371 GCTGAATTTCGTTTCTCCCATGT 59.809 43.478 0.00 0.00 0.00 3.21
198 200 4.726416 CTGAATTTCGTTTCTCCCATGTG 58.274 43.478 0.00 0.00 0.00 3.21
199 201 4.141287 TGAATTTCGTTTCTCCCATGTGT 58.859 39.130 0.00 0.00 0.00 3.72
200 202 4.023279 TGAATTTCGTTTCTCCCATGTGTG 60.023 41.667 0.00 0.00 0.00 3.82
201 203 2.631160 TTCGTTTCTCCCATGTGTGT 57.369 45.000 0.00 0.00 0.00 3.72
202 204 2.631160 TCGTTTCTCCCATGTGTGTT 57.369 45.000 0.00 0.00 0.00 3.32
203 205 2.217750 TCGTTTCTCCCATGTGTGTTG 58.782 47.619 0.00 0.00 0.00 3.33
204 206 1.946768 CGTTTCTCCCATGTGTGTTGT 59.053 47.619 0.00 0.00 0.00 3.32
205 207 3.135225 CGTTTCTCCCATGTGTGTTGTA 58.865 45.455 0.00 0.00 0.00 2.41
206 208 3.751175 CGTTTCTCCCATGTGTGTTGTAT 59.249 43.478 0.00 0.00 0.00 2.29
207 209 4.932799 CGTTTCTCCCATGTGTGTTGTATA 59.067 41.667 0.00 0.00 0.00 1.47
208 210 5.063438 CGTTTCTCCCATGTGTGTTGTATAG 59.937 44.000 0.00 0.00 0.00 1.31
209 211 6.170506 GTTTCTCCCATGTGTGTTGTATAGA 58.829 40.000 0.00 0.00 0.00 1.98
210 212 6.367374 TTCTCCCATGTGTGTTGTATAGAA 57.633 37.500 0.00 0.00 0.00 2.10
211 213 5.977635 TCTCCCATGTGTGTTGTATAGAAG 58.022 41.667 0.00 0.00 0.00 2.85
212 214 4.513442 TCCCATGTGTGTTGTATAGAAGC 58.487 43.478 0.00 0.00 0.00 3.86
213 215 4.019771 TCCCATGTGTGTTGTATAGAAGCA 60.020 41.667 0.00 0.00 0.00 3.91
214 216 4.699735 CCCATGTGTGTTGTATAGAAGCAA 59.300 41.667 0.00 0.00 0.00 3.91
215 217 5.163723 CCCATGTGTGTTGTATAGAAGCAAG 60.164 44.000 0.00 0.00 0.00 4.01
216 218 5.327091 CATGTGTGTTGTATAGAAGCAAGC 58.673 41.667 0.00 0.00 0.00 4.01
217 219 4.641396 TGTGTGTTGTATAGAAGCAAGCT 58.359 39.130 0.00 0.00 0.00 3.74
218 220 4.452114 TGTGTGTTGTATAGAAGCAAGCTG 59.548 41.667 0.00 0.00 0.00 4.24
219 221 4.690748 GTGTGTTGTATAGAAGCAAGCTGA 59.309 41.667 0.00 0.00 0.00 4.26
220 222 5.179368 GTGTGTTGTATAGAAGCAAGCTGAA 59.821 40.000 0.00 0.00 0.00 3.02
221 223 5.939883 TGTGTTGTATAGAAGCAAGCTGAAT 59.060 36.000 0.00 0.00 0.00 2.57
222 224 6.092670 TGTGTTGTATAGAAGCAAGCTGAATC 59.907 38.462 0.00 0.00 0.00 2.52
223 225 6.314896 GTGTTGTATAGAAGCAAGCTGAATCT 59.685 38.462 0.00 0.00 0.00 2.40
224 226 6.536582 TGTTGTATAGAAGCAAGCTGAATCTC 59.463 38.462 0.00 0.00 0.00 2.75
225 227 5.605534 TGTATAGAAGCAAGCTGAATCTCC 58.394 41.667 0.00 0.00 0.00 3.71
226 228 2.021355 AGAAGCAAGCTGAATCTCCG 57.979 50.000 0.00 0.00 0.00 4.63
227 229 0.376502 GAAGCAAGCTGAATCTCCGC 59.623 55.000 0.00 0.00 0.00 5.54
228 230 0.035630 AAGCAAGCTGAATCTCCGCT 60.036 50.000 0.00 0.00 35.09 5.52
229 231 0.743701 AGCAAGCTGAATCTCCGCTG 60.744 55.000 0.00 0.00 33.64 5.18
230 232 1.023513 GCAAGCTGAATCTCCGCTGT 61.024 55.000 0.00 0.00 33.64 4.40
231 233 0.725686 CAAGCTGAATCTCCGCTGTG 59.274 55.000 0.00 0.00 33.64 3.66
232 234 0.322975 AAGCTGAATCTCCGCTGTGT 59.677 50.000 0.00 0.00 33.64 3.72
233 235 0.390866 AGCTGAATCTCCGCTGTGTG 60.391 55.000 0.00 0.00 31.82 3.82
234 236 0.390340 GCTGAATCTCCGCTGTGTGA 60.390 55.000 0.00 0.00 0.00 3.58
235 237 1.941209 GCTGAATCTCCGCTGTGTGAA 60.941 52.381 0.00 0.00 0.00 3.18
236 238 1.728971 CTGAATCTCCGCTGTGTGAAC 59.271 52.381 0.00 0.00 0.00 3.18
237 239 1.079503 GAATCTCCGCTGTGTGAACC 58.920 55.000 0.00 0.00 0.00 3.62
238 240 0.687354 AATCTCCGCTGTGTGAACCT 59.313 50.000 0.00 0.00 0.00 3.50
239 241 0.247736 ATCTCCGCTGTGTGAACCTC 59.752 55.000 0.00 0.00 0.00 3.85
240 242 1.112916 TCTCCGCTGTGTGAACCTCA 61.113 55.000 0.00 0.00 0.00 3.86
263 265 8.783660 TCACTAAGAGAATACCTCATATGGTT 57.216 34.615 2.13 0.00 44.40 3.67
264 266 9.877222 TCACTAAGAGAATACCTCATATGGTTA 57.123 33.333 2.13 0.00 44.40 2.85
266 268 9.884814 ACTAAGAGAATACCTCATATGGTTAGT 57.115 33.333 2.13 0.00 44.40 2.24
269 271 7.967908 AGAGAATACCTCATATGGTTAGTTGG 58.032 38.462 2.13 0.00 44.40 3.77
270 272 7.569111 AGAGAATACCTCATATGGTTAGTTGGT 59.431 37.037 2.13 3.52 44.40 3.67
271 273 8.102484 AGAATACCTCATATGGTTAGTTGGTT 57.898 34.615 2.13 0.00 41.22 3.67
272 274 7.993183 AGAATACCTCATATGGTTAGTTGGTTG 59.007 37.037 2.13 0.00 41.22 3.77
273 275 4.270008 ACCTCATATGGTTAGTTGGTTGC 58.730 43.478 2.13 0.00 36.89 4.17
274 276 4.263727 ACCTCATATGGTTAGTTGGTTGCA 60.264 41.667 2.13 0.00 36.89 4.08
275 277 4.889409 CCTCATATGGTTAGTTGGTTGCAT 59.111 41.667 2.13 0.00 0.00 3.96
276 278 5.221106 CCTCATATGGTTAGTTGGTTGCATG 60.221 44.000 2.13 0.00 0.00 4.06
277 279 5.260424 TCATATGGTTAGTTGGTTGCATGT 58.740 37.500 2.13 0.00 0.00 3.21
278 280 3.940209 ATGGTTAGTTGGTTGCATGTG 57.060 42.857 0.00 0.00 0.00 3.21
279 281 1.959985 TGGTTAGTTGGTTGCATGTGG 59.040 47.619 0.00 0.00 0.00 4.17
280 282 1.960689 GGTTAGTTGGTTGCATGTGGT 59.039 47.619 0.00 0.00 0.00 4.16
281 283 2.364002 GGTTAGTTGGTTGCATGTGGTT 59.636 45.455 0.00 0.00 0.00 3.67
282 284 3.380142 GTTAGTTGGTTGCATGTGGTTG 58.620 45.455 0.00 0.00 0.00 3.77
283 285 0.752054 AGTTGGTTGCATGTGGTTGG 59.248 50.000 0.00 0.00 0.00 3.77
284 286 0.879839 GTTGGTTGCATGTGGTTGGC 60.880 55.000 0.00 0.00 0.00 4.52
285 287 2.049248 GGTTGCATGTGGTTGGCG 60.049 61.111 0.00 0.00 0.00 5.69
286 288 2.727544 GTTGCATGTGGTTGGCGT 59.272 55.556 0.00 0.00 0.00 5.68
287 289 1.067250 GTTGCATGTGGTTGGCGTT 59.933 52.632 0.00 0.00 0.00 4.84
288 290 0.529555 GTTGCATGTGGTTGGCGTTT 60.530 50.000 0.00 0.00 0.00 3.60
289 291 0.176680 TTGCATGTGGTTGGCGTTTT 59.823 45.000 0.00 0.00 0.00 2.43
290 292 0.176680 TGCATGTGGTTGGCGTTTTT 59.823 45.000 0.00 0.00 0.00 1.94
291 293 1.409064 TGCATGTGGTTGGCGTTTTTA 59.591 42.857 0.00 0.00 0.00 1.52
292 294 2.159099 TGCATGTGGTTGGCGTTTTTAA 60.159 40.909 0.00 0.00 0.00 1.52
293 295 2.219903 GCATGTGGTTGGCGTTTTTAAC 59.780 45.455 0.00 0.00 0.00 2.01
294 296 3.712187 CATGTGGTTGGCGTTTTTAACT 58.288 40.909 0.00 0.00 0.00 2.24
295 297 4.793353 GCATGTGGTTGGCGTTTTTAACTA 60.793 41.667 0.00 0.00 0.00 2.24
296 298 4.290104 TGTGGTTGGCGTTTTTAACTAC 57.710 40.909 0.00 0.00 36.65 2.73
297 299 3.693085 TGTGGTTGGCGTTTTTAACTACA 59.307 39.130 0.00 0.00 41.42 2.74
298 300 4.338682 TGTGGTTGGCGTTTTTAACTACAT 59.661 37.500 0.00 0.00 39.69 2.29
299 301 4.677832 GTGGTTGGCGTTTTTAACTACATG 59.322 41.667 0.00 0.00 36.29 3.21
300 302 4.231439 GGTTGGCGTTTTTAACTACATGG 58.769 43.478 0.00 0.00 0.00 3.66
301 303 4.023021 GGTTGGCGTTTTTAACTACATGGA 60.023 41.667 0.00 0.00 0.00 3.41
302 304 5.336134 GGTTGGCGTTTTTAACTACATGGAT 60.336 40.000 0.00 0.00 0.00 3.41
303 305 6.127952 GGTTGGCGTTTTTAACTACATGGATA 60.128 38.462 0.00 0.00 0.00 2.59
304 306 7.306953 GTTGGCGTTTTTAACTACATGGATAA 58.693 34.615 0.00 0.00 0.00 1.75
305 307 7.633193 TGGCGTTTTTAACTACATGGATAAT 57.367 32.000 0.00 0.00 0.00 1.28
306 308 8.057536 TGGCGTTTTTAACTACATGGATAATT 57.942 30.769 0.00 0.00 0.00 1.40
307 309 8.524487 TGGCGTTTTTAACTACATGGATAATTT 58.476 29.630 0.00 0.00 0.00 1.82
308 310 8.803799 GGCGTTTTTAACTACATGGATAATTTG 58.196 33.333 0.00 0.00 0.00 2.32
309 311 8.803799 GCGTTTTTAACTACATGGATAATTTGG 58.196 33.333 0.00 0.00 0.00 3.28
333 335 9.899661 TGGATTGTTATTTAGCTATGTGTAAGT 57.100 29.630 0.00 0.00 0.00 2.24
345 347 8.926092 AGCTATGTGTAAGTCTCATACTATCA 57.074 34.615 0.00 0.00 37.50 2.15
346 348 9.527157 AGCTATGTGTAAGTCTCATACTATCAT 57.473 33.333 0.00 0.00 37.50 2.45
347 349 9.781834 GCTATGTGTAAGTCTCATACTATCATC 57.218 37.037 0.00 0.00 37.50 2.92
409 411 9.389755 TGATTTTGTTCTTATGTCGATATTGGA 57.610 29.630 0.00 0.00 0.00 3.53
410 412 9.869844 GATTTTGTTCTTATGTCGATATTGGAG 57.130 33.333 0.00 0.00 0.00 3.86
411 413 6.844696 TTGTTCTTATGTCGATATTGGAGC 57.155 37.500 0.00 2.55 0.00 4.70
412 414 6.161855 TGTTCTTATGTCGATATTGGAGCT 57.838 37.500 0.00 0.00 0.00 4.09
413 415 6.216569 TGTTCTTATGTCGATATTGGAGCTC 58.783 40.000 4.71 4.71 0.00 4.09
414 416 5.392767 TCTTATGTCGATATTGGAGCTCC 57.607 43.478 26.78 26.78 0.00 4.70
415 417 4.832823 TCTTATGTCGATATTGGAGCTCCA 59.167 41.667 32.00 32.00 45.94 3.86
416 418 5.481824 TCTTATGTCGATATTGGAGCTCCAT 59.518 40.000 35.42 25.29 46.97 3.41
417 419 3.667497 TGTCGATATTGGAGCTCCATC 57.333 47.619 35.42 27.13 46.97 3.51
418 420 3.234353 TGTCGATATTGGAGCTCCATCT 58.766 45.455 35.42 26.18 46.97 2.90
419 421 3.256879 TGTCGATATTGGAGCTCCATCTC 59.743 47.826 35.42 26.97 46.97 2.75
420 422 3.509575 GTCGATATTGGAGCTCCATCTCT 59.490 47.826 35.42 21.45 46.97 3.10
421 423 3.761218 TCGATATTGGAGCTCCATCTCTC 59.239 47.826 35.42 25.08 46.97 3.20
422 424 3.427368 CGATATTGGAGCTCCATCTCTCG 60.427 52.174 35.42 30.76 46.97 4.04
423 425 0.392336 ATTGGAGCTCCATCTCTCGC 59.608 55.000 35.42 5.02 46.97 5.03
424 426 1.680522 TTGGAGCTCCATCTCTCGCC 61.681 60.000 35.42 4.92 46.97 5.54
425 427 2.130426 GGAGCTCCATCTCTCGCCA 61.130 63.158 28.43 0.00 35.64 5.69
426 428 1.470996 GGAGCTCCATCTCTCGCCAT 61.471 60.000 28.43 0.00 35.64 4.40
427 429 0.038343 GAGCTCCATCTCTCGCCATC 60.038 60.000 0.87 0.00 0.00 3.51
428 430 0.758310 AGCTCCATCTCTCGCCATCA 60.758 55.000 0.00 0.00 0.00 3.07
429 431 0.105593 GCTCCATCTCTCGCCATCAA 59.894 55.000 0.00 0.00 0.00 2.57
430 432 1.873069 GCTCCATCTCTCGCCATCAAG 60.873 57.143 0.00 0.00 0.00 3.02
431 433 1.411977 CTCCATCTCTCGCCATCAAGT 59.588 52.381 0.00 0.00 0.00 3.16
432 434 1.137675 TCCATCTCTCGCCATCAAGTG 59.862 52.381 0.00 0.00 0.00 3.16
433 435 1.134580 CCATCTCTCGCCATCAAGTGT 60.135 52.381 0.00 0.00 0.00 3.55
434 436 2.101415 CCATCTCTCGCCATCAAGTGTA 59.899 50.000 0.00 0.00 0.00 2.90
435 437 3.379240 CATCTCTCGCCATCAAGTGTAG 58.621 50.000 0.00 0.00 0.00 2.74
436 438 1.135139 TCTCTCGCCATCAAGTGTAGC 59.865 52.381 0.00 0.00 0.00 3.58
437 439 0.894835 TCTCGCCATCAAGTGTAGCA 59.105 50.000 0.00 0.00 0.00 3.49
438 440 1.275010 TCTCGCCATCAAGTGTAGCAA 59.725 47.619 0.00 0.00 0.00 3.91
439 441 1.662629 CTCGCCATCAAGTGTAGCAAG 59.337 52.381 0.00 0.00 0.00 4.01
440 442 0.097674 CGCCATCAAGTGTAGCAAGC 59.902 55.000 0.00 0.00 0.00 4.01
441 443 1.457346 GCCATCAAGTGTAGCAAGCT 58.543 50.000 0.00 0.00 0.00 3.74
442 444 2.632377 GCCATCAAGTGTAGCAAGCTA 58.368 47.619 0.00 0.00 0.00 3.32
443 445 2.352960 GCCATCAAGTGTAGCAAGCTAC 59.647 50.000 21.98 21.98 46.56 3.58
444 446 3.866651 CCATCAAGTGTAGCAAGCTACT 58.133 45.455 26.86 11.82 46.53 2.57
445 447 4.680708 GCCATCAAGTGTAGCAAGCTACTA 60.681 45.833 26.86 14.36 46.53 1.82
446 448 4.806247 CCATCAAGTGTAGCAAGCTACTAC 59.194 45.833 26.86 22.22 46.53 2.73
447 449 4.092771 TCAAGTGTAGCAAGCTACTACG 57.907 45.455 26.86 15.59 46.53 3.51
448 450 3.754850 TCAAGTGTAGCAAGCTACTACGA 59.245 43.478 26.86 17.16 46.53 3.43
449 451 4.398358 TCAAGTGTAGCAAGCTACTACGAT 59.602 41.667 26.86 16.32 46.53 3.73
450 452 4.294416 AGTGTAGCAAGCTACTACGATG 57.706 45.455 26.86 0.00 46.53 3.84
451 453 3.066900 AGTGTAGCAAGCTACTACGATGG 59.933 47.826 26.86 0.00 46.53 3.51
452 454 2.223735 TGTAGCAAGCTACTACGATGGC 60.224 50.000 26.86 4.20 46.53 4.40
453 455 1.115467 AGCAAGCTACTACGATGGCT 58.885 50.000 0.00 0.00 36.53 4.75
454 456 2.307768 AGCAAGCTACTACGATGGCTA 58.692 47.619 0.00 0.00 34.40 3.93
455 457 2.894126 AGCAAGCTACTACGATGGCTAT 59.106 45.455 0.00 0.00 34.40 2.97
456 458 3.057174 AGCAAGCTACTACGATGGCTATC 60.057 47.826 0.00 0.00 34.40 2.08
457 459 3.057174 GCAAGCTACTACGATGGCTATCT 60.057 47.826 8.55 0.00 34.40 1.98
458 460 4.728534 CAAGCTACTACGATGGCTATCTC 58.271 47.826 8.55 0.00 34.40 2.75
459 461 4.295141 AGCTACTACGATGGCTATCTCT 57.705 45.455 8.55 0.00 32.94 3.10
460 462 4.006989 AGCTACTACGATGGCTATCTCTG 58.993 47.826 8.55 0.65 32.94 3.35
461 463 3.127895 GCTACTACGATGGCTATCTCTGG 59.872 52.174 8.55 0.00 0.00 3.86
462 464 3.231207 ACTACGATGGCTATCTCTGGT 57.769 47.619 8.55 1.33 0.00 4.00
463 465 3.567397 ACTACGATGGCTATCTCTGGTT 58.433 45.455 8.55 0.00 0.00 3.67
464 466 3.961408 ACTACGATGGCTATCTCTGGTTT 59.039 43.478 8.55 0.00 0.00 3.27
465 467 3.914426 ACGATGGCTATCTCTGGTTTT 57.086 42.857 8.55 0.00 0.00 2.43
466 468 5.597182 ACTACGATGGCTATCTCTGGTTTTA 59.403 40.000 8.55 0.00 0.00 1.52
467 469 4.950050 ACGATGGCTATCTCTGGTTTTAG 58.050 43.478 8.55 0.00 0.00 1.85
468 470 4.406003 ACGATGGCTATCTCTGGTTTTAGT 59.594 41.667 8.55 0.00 0.00 2.24
469 471 5.104900 ACGATGGCTATCTCTGGTTTTAGTT 60.105 40.000 8.55 0.00 0.00 2.24
470 472 5.817816 CGATGGCTATCTCTGGTTTTAGTTT 59.182 40.000 8.55 0.00 0.00 2.66
471 473 6.316390 CGATGGCTATCTCTGGTTTTAGTTTT 59.684 38.462 8.55 0.00 0.00 2.43
472 474 7.466050 CGATGGCTATCTCTGGTTTTAGTTTTC 60.466 40.741 8.55 0.00 0.00 2.29
473 475 6.539173 TGGCTATCTCTGGTTTTAGTTTTCA 58.461 36.000 0.00 0.00 0.00 2.69
474 476 7.175104 TGGCTATCTCTGGTTTTAGTTTTCAT 58.825 34.615 0.00 0.00 0.00 2.57
475 477 7.669722 TGGCTATCTCTGGTTTTAGTTTTCATT 59.330 33.333 0.00 0.00 0.00 2.57
476 478 8.523658 GGCTATCTCTGGTTTTAGTTTTCATTT 58.476 33.333 0.00 0.00 0.00 2.32
477 479 9.561270 GCTATCTCTGGTTTTAGTTTTCATTTC 57.439 33.333 0.00 0.00 0.00 2.17
480 482 8.519799 TCTCTGGTTTTAGTTTTCATTTCTGT 57.480 30.769 0.00 0.00 0.00 3.41
481 483 8.966868 TCTCTGGTTTTAGTTTTCATTTCTGTT 58.033 29.630 0.00 0.00 0.00 3.16
482 484 8.925161 TCTGGTTTTAGTTTTCATTTCTGTTG 57.075 30.769 0.00 0.00 0.00 3.33
483 485 8.744652 TCTGGTTTTAGTTTTCATTTCTGTTGA 58.255 29.630 0.00 0.00 0.00 3.18
484 486 9.533253 CTGGTTTTAGTTTTCATTTCTGTTGAT 57.467 29.630 0.00 0.00 0.00 2.57
485 487 9.311916 TGGTTTTAGTTTTCATTTCTGTTGATG 57.688 29.630 0.00 0.00 0.00 3.07
486 488 9.313118 GGTTTTAGTTTTCATTTCTGTTGATGT 57.687 29.630 0.00 0.00 0.00 3.06
492 494 9.683069 AGTTTTCATTTCTGTTGATGTCATAAC 57.317 29.630 0.00 0.00 0.00 1.89
493 495 9.462174 GTTTTCATTTCTGTTGATGTCATAACA 57.538 29.630 0.00 0.00 40.38 2.41
495 497 9.462174 TTTCATTTCTGTTGATGTCATAACAAC 57.538 29.630 9.43 9.43 42.51 3.32
496 498 8.394971 TCATTTCTGTTGATGTCATAACAACT 57.605 30.769 14.91 0.00 42.60 3.16
497 499 9.500785 TCATTTCTGTTGATGTCATAACAACTA 57.499 29.630 14.91 4.80 42.60 2.24
500 502 8.846943 TTCTGTTGATGTCATAACAACTATGT 57.153 30.769 14.91 0.00 42.60 2.29
501 503 9.936759 TTCTGTTGATGTCATAACAACTATGTA 57.063 29.630 14.91 0.00 42.60 2.29
502 504 9.586435 TCTGTTGATGTCATAACAACTATGTAG 57.414 33.333 14.91 6.96 42.60 2.74
503 505 9.586435 CTGTTGATGTCATAACAACTATGTAGA 57.414 33.333 14.91 0.00 42.60 2.59
507 509 9.533253 TGATGTCATAACAACTATGTAGATGTG 57.467 33.333 4.06 0.00 38.97 3.21
508 510 8.893219 ATGTCATAACAACTATGTAGATGTGG 57.107 34.615 4.06 0.00 38.97 4.17
509 511 8.073467 TGTCATAACAACTATGTAGATGTGGA 57.927 34.615 4.06 1.41 38.97 4.02
510 512 8.536175 TGTCATAACAACTATGTAGATGTGGAA 58.464 33.333 4.06 0.00 38.97 3.53
511 513 9.378551 GTCATAACAACTATGTAGATGTGGAAA 57.621 33.333 4.06 0.00 38.97 3.13
512 514 9.952030 TCATAACAACTATGTAGATGTGGAAAA 57.048 29.630 4.06 0.00 38.97 2.29
582 584 8.200792 AGTAGAGAACTTAGCACATAATTCAGG 58.799 37.037 0.00 0.00 33.35 3.86
583 585 6.951971 AGAGAACTTAGCACATAATTCAGGT 58.048 36.000 0.00 0.00 0.00 4.00
584 586 7.398024 AGAGAACTTAGCACATAATTCAGGTT 58.602 34.615 0.00 0.00 0.00 3.50
585 587 7.550906 AGAGAACTTAGCACATAATTCAGGTTC 59.449 37.037 0.00 0.00 0.00 3.62
586 588 7.398024 AGAACTTAGCACATAATTCAGGTTCT 58.602 34.615 0.00 0.00 32.89 3.01
587 589 7.885399 AGAACTTAGCACATAATTCAGGTTCTT 59.115 33.333 0.00 0.00 33.46 2.52
588 590 7.383102 ACTTAGCACATAATTCAGGTTCTTG 57.617 36.000 0.00 0.00 0.00 3.02
589 591 4.708726 AGCACATAATTCAGGTTCTTGC 57.291 40.909 0.00 0.00 0.00 4.01
590 592 4.338879 AGCACATAATTCAGGTTCTTGCT 58.661 39.130 0.00 0.00 33.02 3.91
591 593 4.768968 AGCACATAATTCAGGTTCTTGCTT 59.231 37.500 0.00 0.00 34.15 3.91
592 594 5.244626 AGCACATAATTCAGGTTCTTGCTTT 59.755 36.000 0.00 0.00 34.15 3.51
593 595 5.346822 GCACATAATTCAGGTTCTTGCTTTG 59.653 40.000 0.00 0.00 0.00 2.77
594 596 6.680810 CACATAATTCAGGTTCTTGCTTTGA 58.319 36.000 0.00 0.00 0.00 2.69
595 597 7.318141 CACATAATTCAGGTTCTTGCTTTGAT 58.682 34.615 0.00 0.00 0.00 2.57
596 598 7.487189 CACATAATTCAGGTTCTTGCTTTGATC 59.513 37.037 0.00 0.00 0.00 2.92
597 599 7.177216 ACATAATTCAGGTTCTTGCTTTGATCA 59.823 33.333 0.00 0.00 0.00 2.92
598 600 6.600882 AATTCAGGTTCTTGCTTTGATCAT 57.399 33.333 0.00 0.00 0.00 2.45
599 601 7.707624 AATTCAGGTTCTTGCTTTGATCATA 57.292 32.000 0.00 0.00 0.00 2.15
600 602 7.707624 ATTCAGGTTCTTGCTTTGATCATAA 57.292 32.000 0.00 0.00 0.00 1.90
601 603 7.707624 TTCAGGTTCTTGCTTTGATCATAAT 57.292 32.000 0.00 0.00 0.00 1.28
602 604 7.707624 TCAGGTTCTTGCTTTGATCATAATT 57.292 32.000 0.00 0.00 0.00 1.40
603 605 8.806429 TCAGGTTCTTGCTTTGATCATAATTA 57.194 30.769 0.00 0.00 0.00 1.40
604 606 9.412460 TCAGGTTCTTGCTTTGATCATAATTAT 57.588 29.630 0.00 0.00 0.00 1.28
613 615 9.851686 TGCTTTGATCATAATTATAGTCCAAGT 57.148 29.630 16.28 0.00 0.00 3.16
659 661 9.770097 TTCATCTTTAAGGCTATCTCTATTGTG 57.230 33.333 0.00 0.00 0.00 3.33
660 662 7.875041 TCATCTTTAAGGCTATCTCTATTGTGC 59.125 37.037 0.00 0.00 0.00 4.57
661 663 7.124573 TCTTTAAGGCTATCTCTATTGTGCA 57.875 36.000 0.00 0.00 0.00 4.57
662 664 7.564793 TCTTTAAGGCTATCTCTATTGTGCAA 58.435 34.615 0.00 0.00 0.00 4.08
663 665 8.046708 TCTTTAAGGCTATCTCTATTGTGCAAA 58.953 33.333 0.00 0.00 0.00 3.68
664 666 8.574251 TTTAAGGCTATCTCTATTGTGCAAAA 57.426 30.769 0.00 0.00 0.00 2.44
665 667 8.574251 TTAAGGCTATCTCTATTGTGCAAAAA 57.426 30.769 0.00 0.00 0.00 1.94
711 713 9.751542 ATCATATGTGTAGTACTAAGAGTTTGC 57.248 33.333 3.61 0.00 0.00 3.68
712 714 7.913821 TCATATGTGTAGTACTAAGAGTTTGCG 59.086 37.037 3.61 0.00 0.00 4.85
713 715 4.801891 TGTGTAGTACTAAGAGTTTGCGG 58.198 43.478 3.61 0.00 0.00 5.69
714 716 4.171754 GTGTAGTACTAAGAGTTTGCGGG 58.828 47.826 3.61 0.00 0.00 6.13
715 717 4.081406 TGTAGTACTAAGAGTTTGCGGGA 58.919 43.478 3.61 0.00 0.00 5.14
716 718 4.708421 TGTAGTACTAAGAGTTTGCGGGAT 59.292 41.667 3.61 0.00 0.00 3.85
717 719 4.124851 AGTACTAAGAGTTTGCGGGATG 57.875 45.455 0.00 0.00 0.00 3.51
718 720 3.514309 AGTACTAAGAGTTTGCGGGATGT 59.486 43.478 0.00 0.00 0.00 3.06
719 721 2.973945 ACTAAGAGTTTGCGGGATGTC 58.026 47.619 0.00 0.00 0.00 3.06
720 722 2.301870 ACTAAGAGTTTGCGGGATGTCA 59.698 45.455 0.00 0.00 0.00 3.58
721 723 2.496899 AAGAGTTTGCGGGATGTCAT 57.503 45.000 0.00 0.00 0.00 3.06
722 724 2.029838 AGAGTTTGCGGGATGTCATC 57.970 50.000 4.06 4.06 0.00 2.92
723 725 1.556911 AGAGTTTGCGGGATGTCATCT 59.443 47.619 12.54 0.00 0.00 2.90
724 726 2.766263 AGAGTTTGCGGGATGTCATCTA 59.234 45.455 12.54 0.00 0.00 1.98
725 727 3.126831 GAGTTTGCGGGATGTCATCTAG 58.873 50.000 12.54 7.99 0.00 2.43
726 728 2.501723 AGTTTGCGGGATGTCATCTAGT 59.498 45.455 12.54 0.00 0.00 2.57
727 729 3.055094 AGTTTGCGGGATGTCATCTAGTT 60.055 43.478 12.54 0.00 0.00 2.24
728 730 4.161565 AGTTTGCGGGATGTCATCTAGTTA 59.838 41.667 12.54 0.00 0.00 2.24
729 731 4.322080 TTGCGGGATGTCATCTAGTTAG 57.678 45.455 12.54 0.44 0.00 2.34
730 732 3.562182 TGCGGGATGTCATCTAGTTAGA 58.438 45.455 12.54 0.00 36.65 2.10
731 733 4.152647 TGCGGGATGTCATCTAGTTAGAT 58.847 43.478 12.54 0.00 43.51 1.98
732 734 5.321927 TGCGGGATGTCATCTAGTTAGATA 58.678 41.667 12.54 0.00 40.91 1.98
733 735 5.952347 TGCGGGATGTCATCTAGTTAGATAT 59.048 40.000 12.54 0.00 40.91 1.63
734 736 6.127619 TGCGGGATGTCATCTAGTTAGATATG 60.128 42.308 12.54 0.00 40.91 1.78
735 737 6.127591 GCGGGATGTCATCTAGTTAGATATGT 60.128 42.308 12.54 0.00 40.91 2.29
736 738 7.254137 CGGGATGTCATCTAGTTAGATATGTG 58.746 42.308 12.54 0.00 40.91 3.21
737 739 7.038659 GGGATGTCATCTAGTTAGATATGTGC 58.961 42.308 12.54 0.00 40.91 4.57
738 740 7.038659 GGATGTCATCTAGTTAGATATGTGCC 58.961 42.308 12.54 0.00 40.91 5.01
739 741 6.976934 TGTCATCTAGTTAGATATGTGCCA 57.023 37.500 1.52 0.00 40.91 4.92
740 742 6.986250 TGTCATCTAGTTAGATATGTGCCAG 58.014 40.000 1.52 0.00 40.91 4.85
741 743 6.015095 TGTCATCTAGTTAGATATGTGCCAGG 60.015 42.308 1.52 0.00 40.91 4.45
742 744 4.873746 TCTAGTTAGATATGTGCCAGGC 57.126 45.455 3.66 3.66 0.00 4.85
743 745 2.938956 AGTTAGATATGTGCCAGGCC 57.061 50.000 9.64 0.00 0.00 5.19
744 746 2.126882 AGTTAGATATGTGCCAGGCCA 58.873 47.619 9.64 7.05 0.00 5.36
745 747 2.105477 AGTTAGATATGTGCCAGGCCAG 59.895 50.000 9.64 0.00 0.00 4.85
746 748 1.059098 TAGATATGTGCCAGGCCAGG 58.941 55.000 10.48 10.48 0.00 4.45
773 775 2.360600 GGCCGGGCACACATGTTA 60.361 61.111 25.33 0.00 0.00 2.41
774 776 1.974343 GGCCGGGCACACATGTTAA 60.974 57.895 25.33 0.00 0.00 2.01
775 777 1.211709 GCCGGGCACACATGTTAAC 59.788 57.895 15.62 0.00 0.00 2.01
776 778 1.499949 CCGGGCACACATGTTAACG 59.500 57.895 0.00 0.00 0.00 3.18
777 779 1.499949 CGGGCACACATGTTAACGG 59.500 57.895 0.00 0.00 0.00 4.44
778 780 1.880186 GGGCACACATGTTAACGGG 59.120 57.895 0.00 0.00 0.00 5.28
779 781 1.211709 GGCACACATGTTAACGGGC 59.788 57.895 0.00 0.00 0.00 6.13
780 782 1.241315 GGCACACATGTTAACGGGCT 61.241 55.000 7.93 0.00 0.00 5.19
781 783 0.109781 GCACACATGTTAACGGGCTG 60.110 55.000 0.00 0.00 0.00 4.85
782 784 0.521291 CACACATGTTAACGGGCTGG 59.479 55.000 0.00 0.00 0.00 4.85
783 785 1.241315 ACACATGTTAACGGGCTGGC 61.241 55.000 0.00 0.00 0.00 4.85
784 786 1.074072 ACATGTTAACGGGCTGGCA 59.926 52.632 2.88 0.00 0.00 4.92
785 787 0.323360 ACATGTTAACGGGCTGGCAT 60.323 50.000 2.88 0.00 0.00 4.40
786 788 0.101040 CATGTTAACGGGCTGGCATG 59.899 55.000 2.88 3.41 0.00 4.06
787 789 0.323360 ATGTTAACGGGCTGGCATGT 60.323 50.000 2.88 0.00 0.00 3.21
788 790 1.240641 TGTTAACGGGCTGGCATGTG 61.241 55.000 2.88 0.00 0.00 3.21
789 791 0.958382 GTTAACGGGCTGGCATGTGA 60.958 55.000 2.88 0.00 0.00 3.58
790 792 0.958382 TTAACGGGCTGGCATGTGAC 60.958 55.000 2.88 0.00 0.00 3.67
791 793 2.813226 TAACGGGCTGGCATGTGACC 62.813 60.000 2.88 0.00 0.00 4.02
811 813 3.365265 GGGCCAGGTTTGCACGAG 61.365 66.667 4.39 0.00 0.00 4.18
812 814 3.365265 GGCCAGGTTTGCACGAGG 61.365 66.667 0.00 0.00 0.00 4.63
813 815 4.043200 GCCAGGTTTGCACGAGGC 62.043 66.667 0.00 0.00 45.13 4.70
827 829 2.572173 CGAGGCAAGTCGTTGTAAAC 57.428 50.000 0.00 0.00 45.31 2.01
836 838 4.957266 GTTGTAAACGGGCCAAGC 57.043 55.556 4.39 0.00 36.92 4.01
837 839 2.034607 GTTGTAAACGGGCCAAGCA 58.965 52.632 4.39 0.00 36.92 3.91
838 840 0.039527 GTTGTAAACGGGCCAAGCAG 60.040 55.000 4.39 0.00 36.92 4.24
839 841 1.801309 TTGTAAACGGGCCAAGCAGC 61.801 55.000 4.39 0.00 0.00 5.25
840 842 2.114199 TAAACGGGCCAAGCAGCA 59.886 55.556 4.39 0.00 0.00 4.41
841 843 2.265182 TAAACGGGCCAAGCAGCAC 61.265 57.895 4.39 0.00 0.00 4.40
842 844 2.967507 TAAACGGGCCAAGCAGCACA 62.968 55.000 4.39 0.00 35.19 4.57
846 848 3.677648 GGCCAAGCAGCACACTGG 61.678 66.667 0.00 0.00 44.63 4.00
847 849 2.595463 GCCAAGCAGCACACTGGA 60.595 61.111 0.00 0.00 44.63 3.86
848 850 2.912624 GCCAAGCAGCACACTGGAC 61.913 63.158 0.00 0.00 44.63 4.02
849 851 1.228063 CCAAGCAGCACACTGGACT 60.228 57.895 0.00 0.00 44.63 3.85
850 852 1.512996 CCAAGCAGCACACTGGACTG 61.513 60.000 0.00 0.00 44.63 3.51
851 853 1.228063 AAGCAGCACACTGGACTGG 60.228 57.895 0.00 0.00 44.63 4.00
852 854 2.670934 GCAGCACACTGGACTGGG 60.671 66.667 0.00 0.00 44.63 4.45
853 855 2.831770 CAGCACACTGGACTGGGT 59.168 61.111 0.00 0.00 40.48 4.51
854 856 1.149174 CAGCACACTGGACTGGGTT 59.851 57.895 0.00 0.00 40.48 4.11
855 857 1.149174 AGCACACTGGACTGGGTTG 59.851 57.895 0.00 0.00 0.00 3.77
856 858 1.898574 GCACACTGGACTGGGTTGG 60.899 63.158 0.00 0.00 0.00 3.77
857 859 1.836391 CACACTGGACTGGGTTGGA 59.164 57.895 0.00 0.00 0.00 3.53
858 860 0.535102 CACACTGGACTGGGTTGGAC 60.535 60.000 0.00 0.00 0.00 4.02
859 861 1.073199 CACTGGACTGGGTTGGACC 59.927 63.158 0.00 0.00 37.60 4.46
860 862 1.385347 ACTGGACTGGGTTGGACCA 60.385 57.895 0.00 0.00 41.02 4.02
866 868 3.246687 TGGGTTGGACCAGACCAC 58.753 61.111 20.61 13.48 41.02 4.16
867 869 2.434774 GGGTTGGACCAGACCACC 59.565 66.667 20.61 14.06 41.02 4.61
868 870 2.154074 GGGTTGGACCAGACCACCT 61.154 63.158 20.61 0.00 41.02 4.00
869 871 1.073199 GGTTGGACCAGACCACCTG 59.927 63.158 16.52 0.00 39.85 4.00
879 881 3.710209 CAGACCACCTGGAAATCTTCT 57.290 47.619 0.00 0.00 39.23 2.85
880 882 3.604582 CAGACCACCTGGAAATCTTCTC 58.395 50.000 0.00 0.00 39.23 2.87
881 883 2.573915 AGACCACCTGGAAATCTTCTCC 59.426 50.000 0.00 0.00 38.94 3.71
882 884 1.279271 ACCACCTGGAAATCTTCTCCG 59.721 52.381 0.00 0.00 38.94 4.63
883 885 1.555075 CCACCTGGAAATCTTCTCCGA 59.445 52.381 0.00 0.00 35.55 4.55
884 886 2.622436 CACCTGGAAATCTTCTCCGAC 58.378 52.381 0.00 0.00 35.55 4.79
885 887 1.555533 ACCTGGAAATCTTCTCCGACC 59.444 52.381 0.00 0.00 35.55 4.79
886 888 1.134371 CCTGGAAATCTTCTCCGACCC 60.134 57.143 0.00 0.00 35.55 4.46
887 889 0.909623 TGGAAATCTTCTCCGACCCC 59.090 55.000 0.00 0.00 35.55 4.95
888 890 1.205055 GGAAATCTTCTCCGACCCCT 58.795 55.000 0.00 0.00 0.00 4.79
889 891 2.292653 TGGAAATCTTCTCCGACCCCTA 60.293 50.000 0.00 0.00 35.55 3.53
890 892 2.770232 GGAAATCTTCTCCGACCCCTAA 59.230 50.000 0.00 0.00 0.00 2.69
891 893 3.199289 GGAAATCTTCTCCGACCCCTAAA 59.801 47.826 0.00 0.00 0.00 1.85
892 894 4.324022 GGAAATCTTCTCCGACCCCTAAAA 60.324 45.833 0.00 0.00 0.00 1.52
893 895 4.921644 AATCTTCTCCGACCCCTAAAAA 57.078 40.909 0.00 0.00 0.00 1.94
955 980 1.157513 GATCCCCTCTCCCTCTCCC 59.842 68.421 0.00 0.00 0.00 4.30
1206 1268 1.075374 CACCTCAAGTCCCCATCCAAA 59.925 52.381 0.00 0.00 0.00 3.28
1231 1293 2.756283 CCGTCCTCGCCTTCCTCT 60.756 66.667 0.00 0.00 35.54 3.69
1368 1430 0.302890 GCTTCTCGCATTCCGACATG 59.697 55.000 0.00 0.00 41.89 3.21
1410 1478 1.205064 CGTCACTTTCCGCTGCAAG 59.795 57.895 0.00 0.00 0.00 4.01
1472 1540 0.408309 TCCTCCGAGAACCTCCTTCA 59.592 55.000 0.00 0.00 0.00 3.02
1480 1548 2.169561 GAGAACCTCCTTCAAGCCCTAG 59.830 54.545 0.00 0.00 0.00 3.02
1551 1622 0.035458 CCAACGTCTCCTTCCTGCTT 59.965 55.000 0.00 0.00 0.00 3.91
1601 1672 2.351835 CCAAGCTCTACGCATATACGCT 60.352 50.000 0.00 0.00 42.61 5.07
1755 7158 1.903404 CGCCAAAGTGGAGGGCTTT 60.903 57.895 0.00 0.00 45.53 3.51
1763 7166 5.163353 CCAAAGTGGAGGGCTTTAAGAAAAA 60.163 40.000 0.00 0.00 40.96 1.94
1822 7255 0.107703 TAAGGCTCCATCGTTGCTGG 60.108 55.000 0.00 0.00 34.93 4.85
2665 8566 1.605710 CCTGGTATTGCATAGTGCTGC 59.394 52.381 3.41 0.00 45.31 5.25
2926 8865 1.152694 CCGGATGGGATGCCATGTT 60.153 57.895 25.10 0.00 38.47 2.71
2964 8903 7.967854 TGCAGAATTTCAAACATAGGAATTACG 59.032 33.333 0.00 0.00 0.00 3.18
3056 8998 7.388776 TGTGTAAGTTGGAAGAAATGAGATCTG 59.611 37.037 0.00 0.00 0.00 2.90
3063 9005 5.721480 TGGAAGAAATGAGATCTGAGGTGTA 59.279 40.000 0.00 0.00 0.00 2.90
3089 9031 1.394917 GCAGTAAGGCAACGAGATGTG 59.605 52.381 0.00 0.00 46.39 3.21
3101 9043 5.550981 CAACGAGATGTGATTTAAAGACCG 58.449 41.667 0.00 0.00 0.00 4.79
3104 9046 5.929992 ACGAGATGTGATTTAAAGACCGAAA 59.070 36.000 0.00 0.00 0.00 3.46
3113 9055 8.119226 GTGATTTAAAGACCGAAATGAGATCTG 58.881 37.037 0.00 0.00 0.00 2.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.143915 TCATTTGCCTCCTAGTAAGTATCCT 58.856 40.000 0.00 0.00 0.00 3.24
1 2 6.420913 TCATTTGCCTCCTAGTAAGTATCC 57.579 41.667 0.00 0.00 0.00 2.59
2 3 9.593134 CATATCATTTGCCTCCTAGTAAGTATC 57.407 37.037 0.00 0.00 0.00 2.24
3 4 9.105844 ACATATCATTTGCCTCCTAGTAAGTAT 57.894 33.333 0.00 0.00 0.00 2.12
4 5 8.492415 ACATATCATTTGCCTCCTAGTAAGTA 57.508 34.615 0.00 0.00 0.00 2.24
5 6 7.380423 ACATATCATTTGCCTCCTAGTAAGT 57.620 36.000 0.00 0.00 0.00 2.24
6 7 8.807118 TCTACATATCATTTGCCTCCTAGTAAG 58.193 37.037 0.00 0.00 0.00 2.34
7 8 8.721133 TCTACATATCATTTGCCTCCTAGTAA 57.279 34.615 0.00 0.00 0.00 2.24
41 42 0.639392 AGGAGTCCCTCTAGCCATGT 59.361 55.000 5.25 0.00 38.86 3.21
55 56 7.899172 AGCTATGGGGTAAAATTAAAAAGGAGT 59.101 33.333 0.00 0.00 0.00 3.85
64 65 5.430417 TCCTGACAGCTATGGGGTAAAATTA 59.570 40.000 0.00 0.00 0.00 1.40
65 66 4.229582 TCCTGACAGCTATGGGGTAAAATT 59.770 41.667 0.00 0.00 0.00 1.82
66 67 3.785887 TCCTGACAGCTATGGGGTAAAAT 59.214 43.478 0.00 0.00 0.00 1.82
73 74 4.573900 GATTGTATCCTGACAGCTATGGG 58.426 47.826 0.00 0.00 0.00 4.00
84 85 2.732412 AGATCGCCGATTGTATCCTG 57.268 50.000 0.00 0.00 0.00 3.86
115 117 1.212751 GGTTTGCTCGCACCATTCC 59.787 57.895 0.00 0.00 32.74 3.01
116 118 0.313672 TTGGTTTGCTCGCACCATTC 59.686 50.000 2.57 0.00 42.81 2.67
117 119 0.031994 GTTGGTTTGCTCGCACCATT 59.968 50.000 2.57 0.00 42.81 3.16
118 120 1.106351 TGTTGGTTTGCTCGCACCAT 61.106 50.000 2.57 0.00 42.81 3.55
119 121 1.315981 TTGTTGGTTTGCTCGCACCA 61.316 50.000 0.00 0.00 41.55 4.17
120 122 0.031994 ATTGTTGGTTTGCTCGCACC 59.968 50.000 0.00 0.00 0.00 5.01
121 123 2.287308 TGTATTGTTGGTTTGCTCGCAC 60.287 45.455 0.00 0.00 0.00 5.34
122 124 1.950216 TGTATTGTTGGTTTGCTCGCA 59.050 42.857 0.00 0.00 0.00 5.10
123 125 2.584791 CTGTATTGTTGGTTTGCTCGC 58.415 47.619 0.00 0.00 0.00 5.03
124 126 2.552315 ACCTGTATTGTTGGTTTGCTCG 59.448 45.455 0.00 0.00 0.00 5.03
125 127 3.317993 ACACCTGTATTGTTGGTTTGCTC 59.682 43.478 0.00 0.00 30.72 4.26
126 128 3.068024 CACACCTGTATTGTTGGTTTGCT 59.932 43.478 0.00 0.00 30.72 3.91
127 129 3.181480 ACACACCTGTATTGTTGGTTTGC 60.181 43.478 0.00 0.00 35.60 3.68
128 130 4.097135 TGACACACCTGTATTGTTGGTTTG 59.903 41.667 0.00 0.00 37.50 2.93
129 131 4.274147 TGACACACCTGTATTGTTGGTTT 58.726 39.130 0.00 0.00 30.72 3.27
130 132 3.892284 TGACACACCTGTATTGTTGGTT 58.108 40.909 0.00 0.00 30.72 3.67
131 133 3.569194 TGACACACCTGTATTGTTGGT 57.431 42.857 0.00 0.00 33.87 3.67
132 134 3.004315 GGTTGACACACCTGTATTGTTGG 59.996 47.826 1.01 0.00 33.50 3.77
133 135 3.629855 TGGTTGACACACCTGTATTGTTG 59.370 43.478 7.88 0.00 37.75 3.33
134 136 3.892284 TGGTTGACACACCTGTATTGTT 58.108 40.909 7.88 0.00 37.75 2.83
135 137 3.569194 TGGTTGACACACCTGTATTGT 57.431 42.857 7.88 0.00 37.75 2.71
136 138 4.278170 ACATTGGTTGACACACCTGTATTG 59.722 41.667 7.88 0.00 37.75 1.90
137 139 4.469657 ACATTGGTTGACACACCTGTATT 58.530 39.130 7.88 0.00 37.75 1.89
138 140 4.098914 ACATTGGTTGACACACCTGTAT 57.901 40.909 7.88 0.00 37.75 2.29
139 141 3.569194 ACATTGGTTGACACACCTGTA 57.431 42.857 7.88 0.00 37.75 2.74
140 142 2.435372 ACATTGGTTGACACACCTGT 57.565 45.000 7.88 3.48 37.75 4.00
141 143 2.951642 AGAACATTGGTTGACACACCTG 59.048 45.455 7.88 3.01 37.36 4.00
142 144 3.297134 AGAACATTGGTTGACACACCT 57.703 42.857 7.88 0.00 37.36 4.00
143 145 3.380004 TCAAGAACATTGGTTGACACACC 59.620 43.478 0.00 1.21 37.36 4.16
144 146 4.630894 TCAAGAACATTGGTTGACACAC 57.369 40.909 0.00 0.00 37.36 3.82
145 147 6.489700 ACATATCAAGAACATTGGTTGACACA 59.510 34.615 1.78 0.00 37.36 3.72
146 148 6.913170 ACATATCAAGAACATTGGTTGACAC 58.087 36.000 1.78 0.00 37.36 3.67
147 149 7.663493 TGTACATATCAAGAACATTGGTTGACA 59.337 33.333 0.00 0.00 37.36 3.58
148 150 8.039603 TGTACATATCAAGAACATTGGTTGAC 57.960 34.615 0.00 0.00 37.36 3.18
149 151 8.628630 TTGTACATATCAAGAACATTGGTTGA 57.371 30.769 0.00 2.15 37.36 3.18
150 152 7.485913 GCTTGTACATATCAAGAACATTGGTTG 59.514 37.037 9.40 0.00 43.17 3.77
151 153 7.394359 AGCTTGTACATATCAAGAACATTGGTT 59.606 33.333 9.40 0.00 43.17 3.67
152 154 6.886459 AGCTTGTACATATCAAGAACATTGGT 59.114 34.615 9.40 0.00 43.17 3.67
153 155 7.066163 TCAGCTTGTACATATCAAGAACATTGG 59.934 37.037 9.40 0.00 43.17 3.16
154 156 7.977904 TCAGCTTGTACATATCAAGAACATTG 58.022 34.615 9.40 0.00 43.17 2.82
155 157 8.565896 TTCAGCTTGTACATATCAAGAACATT 57.434 30.769 9.40 0.00 43.17 2.71
156 158 8.743085 ATTCAGCTTGTACATATCAAGAACAT 57.257 30.769 9.40 0.00 43.17 2.71
157 159 8.565896 AATTCAGCTTGTACATATCAAGAACA 57.434 30.769 9.40 0.00 43.17 3.18
158 160 9.495754 GAAATTCAGCTTGTACATATCAAGAAC 57.504 33.333 9.40 0.00 43.17 3.01
159 161 8.390354 CGAAATTCAGCTTGTACATATCAAGAA 58.610 33.333 9.40 0.00 43.17 2.52
160 162 7.549134 ACGAAATTCAGCTTGTACATATCAAGA 59.451 33.333 9.40 0.00 43.17 3.02
161 163 7.688372 ACGAAATTCAGCTTGTACATATCAAG 58.312 34.615 0.00 0.00 43.31 3.02
162 164 7.609760 ACGAAATTCAGCTTGTACATATCAA 57.390 32.000 0.00 0.00 0.00 2.57
163 165 7.609760 AACGAAATTCAGCTTGTACATATCA 57.390 32.000 0.00 0.00 0.00 2.15
164 166 8.391106 AGAAACGAAATTCAGCTTGTACATATC 58.609 33.333 0.00 0.00 0.00 1.63
165 167 8.268850 AGAAACGAAATTCAGCTTGTACATAT 57.731 30.769 0.00 0.00 0.00 1.78
166 168 7.148474 GGAGAAACGAAATTCAGCTTGTACATA 60.148 37.037 0.00 0.00 0.00 2.29
167 169 6.348540 GGAGAAACGAAATTCAGCTTGTACAT 60.349 38.462 0.00 0.00 0.00 2.29
168 170 5.049680 GGAGAAACGAAATTCAGCTTGTACA 60.050 40.000 0.00 0.00 0.00 2.90
169 171 5.383130 GGAGAAACGAAATTCAGCTTGTAC 58.617 41.667 0.00 0.00 0.00 2.90
170 172 4.454504 GGGAGAAACGAAATTCAGCTTGTA 59.545 41.667 0.00 0.00 0.00 2.41
171 173 3.253432 GGGAGAAACGAAATTCAGCTTGT 59.747 43.478 0.00 0.00 0.00 3.16
172 174 3.253188 TGGGAGAAACGAAATTCAGCTTG 59.747 43.478 0.00 0.00 0.00 4.01
173 175 3.486383 TGGGAGAAACGAAATTCAGCTT 58.514 40.909 0.00 0.00 0.00 3.74
174 176 3.140325 TGGGAGAAACGAAATTCAGCT 57.860 42.857 0.00 0.00 0.00 4.24
175 177 3.191371 ACATGGGAGAAACGAAATTCAGC 59.809 43.478 0.00 0.00 0.00 4.26
176 178 4.216257 ACACATGGGAGAAACGAAATTCAG 59.784 41.667 0.00 0.00 0.00 3.02
177 179 4.023279 CACACATGGGAGAAACGAAATTCA 60.023 41.667 0.00 0.00 0.00 2.57
178 180 4.023193 ACACACATGGGAGAAACGAAATTC 60.023 41.667 0.00 0.00 0.00 2.17
179 181 3.888930 ACACACATGGGAGAAACGAAATT 59.111 39.130 0.00 0.00 0.00 1.82
180 182 3.486383 ACACACATGGGAGAAACGAAAT 58.514 40.909 0.00 0.00 0.00 2.17
181 183 2.925724 ACACACATGGGAGAAACGAAA 58.074 42.857 0.00 0.00 0.00 3.46
182 184 2.616376 CAACACACATGGGAGAAACGAA 59.384 45.455 0.00 0.00 0.00 3.85
183 185 2.217750 CAACACACATGGGAGAAACGA 58.782 47.619 0.00 0.00 0.00 3.85
184 186 1.946768 ACAACACACATGGGAGAAACG 59.053 47.619 0.00 0.00 0.00 3.60
185 187 6.170506 TCTATACAACACACATGGGAGAAAC 58.829 40.000 0.00 0.00 0.00 2.78
186 188 6.367374 TCTATACAACACACATGGGAGAAA 57.633 37.500 0.00 0.00 0.00 2.52
187 189 6.367374 TTCTATACAACACACATGGGAGAA 57.633 37.500 0.00 0.00 0.00 2.87
188 190 5.626809 GCTTCTATACAACACACATGGGAGA 60.627 44.000 0.00 0.00 0.00 3.71
189 191 4.572389 GCTTCTATACAACACACATGGGAG 59.428 45.833 0.00 0.00 0.00 4.30
190 192 4.019771 TGCTTCTATACAACACACATGGGA 60.020 41.667 0.00 0.00 0.00 4.37
191 193 4.260985 TGCTTCTATACAACACACATGGG 58.739 43.478 0.00 0.00 0.00 4.00
192 194 5.674569 GCTTGCTTCTATACAACACACATGG 60.675 44.000 0.00 0.00 0.00 3.66
193 195 5.122869 AGCTTGCTTCTATACAACACACATG 59.877 40.000 0.00 0.00 0.00 3.21
194 196 5.122869 CAGCTTGCTTCTATACAACACACAT 59.877 40.000 0.00 0.00 0.00 3.21
195 197 4.452114 CAGCTTGCTTCTATACAACACACA 59.548 41.667 0.00 0.00 0.00 3.72
196 198 4.690748 TCAGCTTGCTTCTATACAACACAC 59.309 41.667 0.00 0.00 0.00 3.82
197 199 4.893608 TCAGCTTGCTTCTATACAACACA 58.106 39.130 0.00 0.00 0.00 3.72
198 200 5.862924 TTCAGCTTGCTTCTATACAACAC 57.137 39.130 0.00 0.00 0.00 3.32
199 201 6.409704 AGATTCAGCTTGCTTCTATACAACA 58.590 36.000 0.00 0.00 0.00 3.33
200 202 6.018343 GGAGATTCAGCTTGCTTCTATACAAC 60.018 42.308 0.00 0.00 0.00 3.32
201 203 6.051717 GGAGATTCAGCTTGCTTCTATACAA 58.948 40.000 0.00 0.00 0.00 2.41
202 204 5.605534 GGAGATTCAGCTTGCTTCTATACA 58.394 41.667 0.00 0.00 0.00 2.29
203 205 4.683781 CGGAGATTCAGCTTGCTTCTATAC 59.316 45.833 0.00 0.00 0.00 1.47
204 206 4.797604 GCGGAGATTCAGCTTGCTTCTATA 60.798 45.833 0.00 0.00 34.72 1.31
205 207 3.726607 CGGAGATTCAGCTTGCTTCTAT 58.273 45.455 0.00 0.00 0.00 1.98
206 208 2.739932 GCGGAGATTCAGCTTGCTTCTA 60.740 50.000 0.00 0.00 34.72 2.10
207 209 2.011046 GCGGAGATTCAGCTTGCTTCT 61.011 52.381 0.00 0.00 34.72 2.85
208 210 0.376502 GCGGAGATTCAGCTTGCTTC 59.623 55.000 0.00 0.00 34.72 3.86
209 211 0.035630 AGCGGAGATTCAGCTTGCTT 60.036 50.000 0.00 0.00 45.34 3.91
210 212 0.743701 CAGCGGAGATTCAGCTTGCT 60.744 55.000 0.94 0.00 45.34 3.91
211 213 1.023513 ACAGCGGAGATTCAGCTTGC 61.024 55.000 0.94 0.00 45.34 4.01
212 214 0.725686 CACAGCGGAGATTCAGCTTG 59.274 55.000 0.94 1.38 45.34 4.01
213 215 0.322975 ACACAGCGGAGATTCAGCTT 59.677 50.000 0.94 0.00 45.34 3.74
215 217 0.390340 TCACACAGCGGAGATTCAGC 60.390 55.000 0.00 0.00 37.86 4.26
216 218 1.728971 GTTCACACAGCGGAGATTCAG 59.271 52.381 0.00 0.00 0.00 3.02
217 219 1.608025 GGTTCACACAGCGGAGATTCA 60.608 52.381 0.00 0.00 0.00 2.57
218 220 1.079503 GGTTCACACAGCGGAGATTC 58.920 55.000 0.00 0.00 0.00 2.52
219 221 0.687354 AGGTTCACACAGCGGAGATT 59.313 50.000 0.00 0.00 0.00 2.40
220 222 0.247736 GAGGTTCACACAGCGGAGAT 59.752 55.000 0.00 0.00 0.00 2.75
221 223 1.112916 TGAGGTTCACACAGCGGAGA 61.113 55.000 0.00 0.00 0.00 3.71
222 224 0.946221 GTGAGGTTCACACAGCGGAG 60.946 60.000 4.42 0.00 46.22 4.63
223 225 1.069090 GTGAGGTTCACACAGCGGA 59.931 57.895 4.42 0.00 46.22 5.54
224 226 3.642755 GTGAGGTTCACACAGCGG 58.357 61.111 4.42 0.00 46.22 5.52
229 231 7.842133 GAGGTATTCTCTTAGTGAGGTTCACAC 60.842 44.444 11.38 0.00 43.01 3.82
230 232 6.153000 GAGGTATTCTCTTAGTGAGGTTCACA 59.847 42.308 11.38 0.00 43.01 3.58
231 233 6.153000 TGAGGTATTCTCTTAGTGAGGTTCAC 59.847 42.308 1.02 1.02 43.78 3.18
232 234 6.253758 TGAGGTATTCTCTTAGTGAGGTTCA 58.746 40.000 0.00 0.00 42.86 3.18
233 235 6.777213 TGAGGTATTCTCTTAGTGAGGTTC 57.223 41.667 0.00 0.00 42.86 3.62
234 236 8.865090 CATATGAGGTATTCTCTTAGTGAGGTT 58.135 37.037 0.00 0.00 42.86 3.50
235 237 7.453126 CCATATGAGGTATTCTCTTAGTGAGGT 59.547 40.741 3.65 0.00 42.86 3.85
236 238 7.453126 ACCATATGAGGTATTCTCTTAGTGAGG 59.547 40.741 3.65 0.00 40.98 3.86
237 239 8.415950 ACCATATGAGGTATTCTCTTAGTGAG 57.584 38.462 3.65 0.00 40.98 3.51
238 240 8.783660 AACCATATGAGGTATTCTCTTAGTGA 57.216 34.615 3.65 0.00 42.25 3.41
240 242 9.884814 ACTAACCATATGAGGTATTCTCTTAGT 57.115 33.333 3.65 0.00 42.25 2.24
243 245 8.432805 CCAACTAACCATATGAGGTATTCTCTT 58.567 37.037 3.65 0.00 42.25 2.85
244 246 7.569111 ACCAACTAACCATATGAGGTATTCTCT 59.431 37.037 3.65 0.00 42.25 3.10
245 247 7.736893 ACCAACTAACCATATGAGGTATTCTC 58.263 38.462 3.65 0.00 42.25 2.87
246 248 7.691993 ACCAACTAACCATATGAGGTATTCT 57.308 36.000 3.65 0.00 42.25 2.40
247 249 7.255139 GCAACCAACTAACCATATGAGGTATTC 60.255 40.741 3.65 0.00 42.25 1.75
248 250 6.546034 GCAACCAACTAACCATATGAGGTATT 59.454 38.462 3.65 0.00 42.25 1.89
249 251 6.062095 GCAACCAACTAACCATATGAGGTAT 58.938 40.000 3.65 0.00 42.25 2.73
250 252 5.045505 TGCAACCAACTAACCATATGAGGTA 60.046 40.000 3.65 0.00 42.25 3.08
251 253 4.263727 TGCAACCAACTAACCATATGAGGT 60.264 41.667 3.65 0.00 45.91 3.85
252 254 4.269183 TGCAACCAACTAACCATATGAGG 58.731 43.478 3.65 0.00 0.00 3.86
253 255 5.357878 ACATGCAACCAACTAACCATATGAG 59.642 40.000 3.65 0.00 0.00 2.90
254 256 5.125257 CACATGCAACCAACTAACCATATGA 59.875 40.000 3.65 0.00 0.00 2.15
255 257 5.342433 CACATGCAACCAACTAACCATATG 58.658 41.667 0.00 0.00 0.00 1.78
256 258 4.402155 CCACATGCAACCAACTAACCATAT 59.598 41.667 0.00 0.00 0.00 1.78
257 259 3.761218 CCACATGCAACCAACTAACCATA 59.239 43.478 0.00 0.00 0.00 2.74
258 260 2.562298 CCACATGCAACCAACTAACCAT 59.438 45.455 0.00 0.00 0.00 3.55
259 261 1.959985 CCACATGCAACCAACTAACCA 59.040 47.619 0.00 0.00 0.00 3.67
260 262 1.960689 ACCACATGCAACCAACTAACC 59.039 47.619 0.00 0.00 0.00 2.85
261 263 3.380142 CAACCACATGCAACCAACTAAC 58.620 45.455 0.00 0.00 0.00 2.34
262 264 2.363680 CCAACCACATGCAACCAACTAA 59.636 45.455 0.00 0.00 0.00 2.24
263 265 1.959985 CCAACCACATGCAACCAACTA 59.040 47.619 0.00 0.00 0.00 2.24
264 266 0.752054 CCAACCACATGCAACCAACT 59.248 50.000 0.00 0.00 0.00 3.16
265 267 0.879839 GCCAACCACATGCAACCAAC 60.880 55.000 0.00 0.00 0.00 3.77
266 268 1.445095 GCCAACCACATGCAACCAA 59.555 52.632 0.00 0.00 0.00 3.67
267 269 2.854401 CGCCAACCACATGCAACCA 61.854 57.895 0.00 0.00 0.00 3.67
268 270 2.049248 CGCCAACCACATGCAACC 60.049 61.111 0.00 0.00 0.00 3.77
269 271 0.529555 AAACGCCAACCACATGCAAC 60.530 50.000 0.00 0.00 0.00 4.17
270 272 0.176680 AAAACGCCAACCACATGCAA 59.823 45.000 0.00 0.00 0.00 4.08
271 273 0.176680 AAAAACGCCAACCACATGCA 59.823 45.000 0.00 0.00 0.00 3.96
272 274 2.141535 TAAAAACGCCAACCACATGC 57.858 45.000 0.00 0.00 0.00 4.06
273 275 3.712187 AGTTAAAAACGCCAACCACATG 58.288 40.909 0.00 0.00 36.23 3.21
274 276 4.338682 TGTAGTTAAAAACGCCAACCACAT 59.661 37.500 0.00 0.00 36.23 3.21
275 277 3.693085 TGTAGTTAAAAACGCCAACCACA 59.307 39.130 0.00 0.00 36.23 4.17
276 278 4.290104 TGTAGTTAAAAACGCCAACCAC 57.710 40.909 0.00 0.00 36.23 4.16
277 279 4.261656 CCATGTAGTTAAAAACGCCAACCA 60.262 41.667 0.00 0.00 36.23 3.67
278 280 4.023021 TCCATGTAGTTAAAAACGCCAACC 60.023 41.667 0.00 0.00 36.23 3.77
279 281 5.110940 TCCATGTAGTTAAAAACGCCAAC 57.889 39.130 0.00 0.00 36.23 3.77
280 282 5.968528 ATCCATGTAGTTAAAAACGCCAA 57.031 34.783 0.00 0.00 36.23 4.52
281 283 7.633193 ATTATCCATGTAGTTAAAAACGCCA 57.367 32.000 0.00 0.00 36.23 5.69
282 284 8.803799 CAAATTATCCATGTAGTTAAAAACGCC 58.196 33.333 0.00 0.00 36.23 5.68
283 285 8.803799 CCAAATTATCCATGTAGTTAAAAACGC 58.196 33.333 0.00 0.00 36.23 4.84
307 309 9.899661 ACTTACACATAGCTAAATAACAATCCA 57.100 29.630 0.00 0.00 0.00 3.41
320 322 8.926092 TGATAGTATGAGACTTACACATAGCT 57.074 34.615 0.00 0.00 39.81 3.32
321 323 9.781834 GATGATAGTATGAGACTTACACATAGC 57.218 37.037 0.00 0.00 39.81 2.97
383 385 9.389755 TCCAATATCGACATAAGAACAAAATCA 57.610 29.630 0.00 0.00 0.00 2.57
384 386 9.869844 CTCCAATATCGACATAAGAACAAAATC 57.130 33.333 0.00 0.00 0.00 2.17
385 387 8.345565 GCTCCAATATCGACATAAGAACAAAAT 58.654 33.333 0.00 0.00 0.00 1.82
386 388 7.552687 AGCTCCAATATCGACATAAGAACAAAA 59.447 33.333 0.00 0.00 0.00 2.44
387 389 7.047891 AGCTCCAATATCGACATAAGAACAAA 58.952 34.615 0.00 0.00 0.00 2.83
388 390 6.582636 AGCTCCAATATCGACATAAGAACAA 58.417 36.000 0.00 0.00 0.00 2.83
389 391 6.161855 AGCTCCAATATCGACATAAGAACA 57.838 37.500 0.00 0.00 0.00 3.18
390 392 5.635700 GGAGCTCCAATATCGACATAAGAAC 59.364 44.000 28.43 0.00 35.64 3.01
391 393 5.304357 TGGAGCTCCAATATCGACATAAGAA 59.696 40.000 33.41 2.89 44.35 2.52
392 394 4.832823 TGGAGCTCCAATATCGACATAAGA 59.167 41.667 33.41 3.32 44.35 2.10
393 395 5.139435 TGGAGCTCCAATATCGACATAAG 57.861 43.478 33.41 0.00 44.35 1.73
407 409 1.470996 ATGGCGAGAGATGGAGCTCC 61.471 60.000 26.78 26.78 35.49 4.70
408 410 0.038343 GATGGCGAGAGATGGAGCTC 60.038 60.000 4.71 4.71 35.11 4.09
409 411 0.758310 TGATGGCGAGAGATGGAGCT 60.758 55.000 0.00 0.00 0.00 4.09
410 412 0.105593 TTGATGGCGAGAGATGGAGC 59.894 55.000 0.00 0.00 0.00 4.70
411 413 1.411977 ACTTGATGGCGAGAGATGGAG 59.588 52.381 0.00 0.00 0.00 3.86
412 414 1.137675 CACTTGATGGCGAGAGATGGA 59.862 52.381 0.00 0.00 0.00 3.41
413 415 1.134580 ACACTTGATGGCGAGAGATGG 60.135 52.381 0.00 0.00 0.00 3.51
414 416 2.306341 ACACTTGATGGCGAGAGATG 57.694 50.000 0.00 0.00 0.00 2.90
415 417 2.223923 GCTACACTTGATGGCGAGAGAT 60.224 50.000 0.00 0.00 0.00 2.75
416 418 1.135139 GCTACACTTGATGGCGAGAGA 59.865 52.381 0.00 0.00 0.00 3.10
417 419 1.134995 TGCTACACTTGATGGCGAGAG 60.135 52.381 0.00 0.00 0.00 3.20
418 420 0.894835 TGCTACACTTGATGGCGAGA 59.105 50.000 0.00 0.00 0.00 4.04
419 421 1.662629 CTTGCTACACTTGATGGCGAG 59.337 52.381 0.00 0.00 0.00 5.03
420 422 1.725641 CTTGCTACACTTGATGGCGA 58.274 50.000 0.00 0.00 0.00 5.54
421 423 0.097674 GCTTGCTACACTTGATGGCG 59.902 55.000 0.00 0.00 0.00 5.69
422 424 1.457346 AGCTTGCTACACTTGATGGC 58.543 50.000 0.00 0.00 0.00 4.40
423 425 3.866651 AGTAGCTTGCTACACTTGATGG 58.133 45.455 27.66 0.00 32.56 3.51
424 426 4.500837 CGTAGTAGCTTGCTACACTTGATG 59.499 45.833 27.66 12.90 38.87 3.07
425 427 4.398358 TCGTAGTAGCTTGCTACACTTGAT 59.602 41.667 27.66 13.15 38.87 2.57
426 428 3.754850 TCGTAGTAGCTTGCTACACTTGA 59.245 43.478 27.66 18.50 38.87 3.02
427 429 4.092771 TCGTAGTAGCTTGCTACACTTG 57.907 45.455 27.66 16.98 38.87 3.16
428 430 4.440250 CCATCGTAGTAGCTTGCTACACTT 60.440 45.833 27.66 14.33 38.87 3.16
429 431 3.066900 CCATCGTAGTAGCTTGCTACACT 59.933 47.826 27.66 16.46 38.87 3.55
430 432 3.372954 CCATCGTAGTAGCTTGCTACAC 58.627 50.000 27.66 21.83 38.87 2.90
431 433 2.223735 GCCATCGTAGTAGCTTGCTACA 60.224 50.000 27.66 14.96 38.87 2.74
432 434 2.034812 AGCCATCGTAGTAGCTTGCTAC 59.965 50.000 21.24 21.24 36.41 3.58
433 435 2.307768 AGCCATCGTAGTAGCTTGCTA 58.692 47.619 0.00 0.00 29.27 3.49
434 436 1.115467 AGCCATCGTAGTAGCTTGCT 58.885 50.000 0.00 0.00 29.27 3.91
435 437 2.795175 TAGCCATCGTAGTAGCTTGC 57.205 50.000 0.00 0.00 36.79 4.01
436 438 4.457603 AGAGATAGCCATCGTAGTAGCTTG 59.542 45.833 0.00 0.00 36.79 4.01
437 439 4.457603 CAGAGATAGCCATCGTAGTAGCTT 59.542 45.833 0.00 0.00 36.79 3.74
438 440 4.006989 CAGAGATAGCCATCGTAGTAGCT 58.993 47.826 0.00 0.00 39.37 3.32
439 441 3.127895 CCAGAGATAGCCATCGTAGTAGC 59.872 52.174 0.00 0.00 36.20 3.58
440 442 4.328536 ACCAGAGATAGCCATCGTAGTAG 58.671 47.826 0.00 0.00 36.20 2.57
441 443 4.368565 ACCAGAGATAGCCATCGTAGTA 57.631 45.455 0.00 0.00 36.20 1.82
442 444 3.231207 ACCAGAGATAGCCATCGTAGT 57.769 47.619 0.00 0.00 36.20 2.73
443 445 4.592485 AAACCAGAGATAGCCATCGTAG 57.408 45.455 0.00 0.00 36.20 3.51
444 446 5.597182 ACTAAAACCAGAGATAGCCATCGTA 59.403 40.000 0.00 0.00 36.20 3.43
445 447 3.914426 AAAACCAGAGATAGCCATCGT 57.086 42.857 0.00 0.00 36.20 3.73
446 448 4.950050 ACTAAAACCAGAGATAGCCATCG 58.050 43.478 0.00 0.00 36.20 3.84
447 449 7.336931 TGAAAACTAAAACCAGAGATAGCCATC 59.663 37.037 0.00 0.00 0.00 3.51
448 450 7.175104 TGAAAACTAAAACCAGAGATAGCCAT 58.825 34.615 0.00 0.00 0.00 4.40
449 451 6.539173 TGAAAACTAAAACCAGAGATAGCCA 58.461 36.000 0.00 0.00 0.00 4.75
450 452 7.631717 ATGAAAACTAAAACCAGAGATAGCC 57.368 36.000 0.00 0.00 0.00 3.93
451 453 9.561270 GAAATGAAAACTAAAACCAGAGATAGC 57.439 33.333 0.00 0.00 0.00 2.97
454 456 9.136323 ACAGAAATGAAAACTAAAACCAGAGAT 57.864 29.630 0.00 0.00 0.00 2.75
455 457 8.519799 ACAGAAATGAAAACTAAAACCAGAGA 57.480 30.769 0.00 0.00 0.00 3.10
456 458 9.023967 CAACAGAAATGAAAACTAAAACCAGAG 57.976 33.333 0.00 0.00 0.00 3.35
457 459 8.744652 TCAACAGAAATGAAAACTAAAACCAGA 58.255 29.630 0.00 0.00 0.00 3.86
458 460 8.925161 TCAACAGAAATGAAAACTAAAACCAG 57.075 30.769 0.00 0.00 0.00 4.00
459 461 9.311916 CATCAACAGAAATGAAAACTAAAACCA 57.688 29.630 0.00 0.00 0.00 3.67
460 462 9.313118 ACATCAACAGAAATGAAAACTAAAACC 57.687 29.630 0.00 0.00 0.00 3.27
466 468 9.683069 GTTATGACATCAACAGAAATGAAAACT 57.317 29.630 0.00 0.00 0.00 2.66
467 469 9.462174 TGTTATGACATCAACAGAAATGAAAAC 57.538 29.630 0.00 0.00 31.29 2.43
469 471 9.462174 GTTGTTATGACATCAACAGAAATGAAA 57.538 29.630 12.72 0.00 40.44 2.69
470 472 8.849168 AGTTGTTATGACATCAACAGAAATGAA 58.151 29.630 17.55 0.31 42.33 2.57
471 473 8.394971 AGTTGTTATGACATCAACAGAAATGA 57.605 30.769 17.55 0.00 42.33 2.57
474 476 9.283768 ACATAGTTGTTATGACATCAACAGAAA 57.716 29.630 17.55 5.41 41.45 2.52
475 477 8.846943 ACATAGTTGTTATGACATCAACAGAA 57.153 30.769 17.55 7.19 41.45 3.02
476 478 9.586435 CTACATAGTTGTTATGACATCAACAGA 57.414 33.333 17.55 8.85 41.45 3.41
477 479 9.586435 TCTACATAGTTGTTATGACATCAACAG 57.414 33.333 17.55 11.37 41.45 3.16
481 483 9.533253 CACATCTACATAGTTGTTATGACATCA 57.467 33.333 0.00 0.00 41.45 3.07
482 484 8.982685 CCACATCTACATAGTTGTTATGACATC 58.017 37.037 0.00 0.00 41.45 3.06
483 485 8.704668 TCCACATCTACATAGTTGTTATGACAT 58.295 33.333 0.00 0.00 41.45 3.06
484 486 8.073467 TCCACATCTACATAGTTGTTATGACA 57.927 34.615 1.49 0.00 41.45 3.58
485 487 8.942338 TTCCACATCTACATAGTTGTTATGAC 57.058 34.615 1.49 0.00 41.45 3.06
486 488 9.952030 TTTTCCACATCTACATAGTTGTTATGA 57.048 29.630 1.49 0.00 41.45 2.15
545 547 9.239551 TGCTAAGTTCTCTACTAAATGTAGTGA 57.760 33.333 5.77 1.19 46.50 3.41
546 548 9.291664 GTGCTAAGTTCTCTACTAAATGTAGTG 57.708 37.037 5.77 0.00 46.50 2.74
547 549 9.021807 TGTGCTAAGTTCTCTACTAAATGTAGT 57.978 33.333 0.19 0.19 46.50 2.73
556 558 8.200792 CCTGAATTATGTGCTAAGTTCTCTACT 58.799 37.037 0.00 0.00 39.32 2.57
557 559 7.982354 ACCTGAATTATGTGCTAAGTTCTCTAC 59.018 37.037 0.00 0.00 0.00 2.59
558 560 8.079211 ACCTGAATTATGTGCTAAGTTCTCTA 57.921 34.615 0.00 0.00 0.00 2.43
559 561 6.951971 ACCTGAATTATGTGCTAAGTTCTCT 58.048 36.000 0.00 0.00 0.00 3.10
560 562 7.550906 AGAACCTGAATTATGTGCTAAGTTCTC 59.449 37.037 0.00 0.00 36.41 2.87
561 563 7.398024 AGAACCTGAATTATGTGCTAAGTTCT 58.602 34.615 0.00 0.00 36.35 3.01
562 564 7.617041 AGAACCTGAATTATGTGCTAAGTTC 57.383 36.000 0.00 0.00 0.00 3.01
563 565 7.575720 GCAAGAACCTGAATTATGTGCTAAGTT 60.576 37.037 0.00 0.00 0.00 2.66
564 566 6.127897 GCAAGAACCTGAATTATGTGCTAAGT 60.128 38.462 0.00 0.00 0.00 2.24
565 567 6.094603 AGCAAGAACCTGAATTATGTGCTAAG 59.905 38.462 0.00 0.00 38.00 2.18
566 568 5.945784 AGCAAGAACCTGAATTATGTGCTAA 59.054 36.000 0.00 0.00 38.00 3.09
567 569 5.500234 AGCAAGAACCTGAATTATGTGCTA 58.500 37.500 0.00 0.00 38.00 3.49
568 570 4.338879 AGCAAGAACCTGAATTATGTGCT 58.661 39.130 0.00 0.00 35.09 4.40
569 571 4.708726 AGCAAGAACCTGAATTATGTGC 57.291 40.909 0.00 0.00 0.00 4.57
570 572 6.680810 TCAAAGCAAGAACCTGAATTATGTG 58.319 36.000 0.00 0.00 0.00 3.21
571 573 6.899393 TCAAAGCAAGAACCTGAATTATGT 57.101 33.333 0.00 0.00 0.00 2.29
572 574 7.541162 TGATCAAAGCAAGAACCTGAATTATG 58.459 34.615 0.00 0.00 0.00 1.90
573 575 7.707624 TGATCAAAGCAAGAACCTGAATTAT 57.292 32.000 0.00 0.00 0.00 1.28
574 576 7.707624 ATGATCAAAGCAAGAACCTGAATTA 57.292 32.000 0.00 0.00 0.00 1.40
575 577 6.600882 ATGATCAAAGCAAGAACCTGAATT 57.399 33.333 0.00 0.00 0.00 2.17
576 578 7.707624 TTATGATCAAAGCAAGAACCTGAAT 57.292 32.000 0.00 0.00 0.00 2.57
577 579 7.707624 ATTATGATCAAAGCAAGAACCTGAA 57.292 32.000 0.00 0.00 0.00 3.02
578 580 7.707624 AATTATGATCAAAGCAAGAACCTGA 57.292 32.000 0.00 0.00 0.00 3.86
587 589 9.851686 ACTTGGACTATAATTATGATCAAAGCA 57.148 29.630 18.88 5.98 0.00 3.91
633 635 9.770097 CACAATAGAGATAGCCTTAAAGATGAA 57.230 33.333 0.00 0.00 0.00 2.57
634 636 7.875041 GCACAATAGAGATAGCCTTAAAGATGA 59.125 37.037 0.00 0.00 0.00 2.92
635 637 7.658982 TGCACAATAGAGATAGCCTTAAAGATG 59.341 37.037 0.00 0.00 0.00 2.90
636 638 7.739825 TGCACAATAGAGATAGCCTTAAAGAT 58.260 34.615 0.00 0.00 0.00 2.40
637 639 7.124573 TGCACAATAGAGATAGCCTTAAAGA 57.875 36.000 0.00 0.00 0.00 2.52
638 640 7.792374 TTGCACAATAGAGATAGCCTTAAAG 57.208 36.000 0.00 0.00 0.00 1.85
639 641 8.574251 TTTTGCACAATAGAGATAGCCTTAAA 57.426 30.769 0.00 0.00 0.00 1.52
640 642 8.574251 TTTTTGCACAATAGAGATAGCCTTAA 57.426 30.769 0.00 0.00 0.00 1.85
685 687 9.751542 GCAAACTCTTAGTACTACACATATGAT 57.248 33.333 10.38 0.00 0.00 2.45
686 688 7.913821 CGCAAACTCTTAGTACTACACATATGA 59.086 37.037 10.38 0.00 0.00 2.15
687 689 7.167635 CCGCAAACTCTTAGTACTACACATATG 59.832 40.741 0.91 0.00 0.00 1.78
688 690 7.201145 CCGCAAACTCTTAGTACTACACATAT 58.799 38.462 0.91 0.00 0.00 1.78
689 691 6.405065 CCCGCAAACTCTTAGTACTACACATA 60.405 42.308 0.91 0.00 0.00 2.29
690 692 5.408356 CCGCAAACTCTTAGTACTACACAT 58.592 41.667 0.91 0.00 0.00 3.21
691 693 4.321452 CCCGCAAACTCTTAGTACTACACA 60.321 45.833 0.91 0.00 0.00 3.72
692 694 4.082571 TCCCGCAAACTCTTAGTACTACAC 60.083 45.833 0.91 0.00 0.00 2.90
693 695 4.081406 TCCCGCAAACTCTTAGTACTACA 58.919 43.478 0.91 0.00 0.00 2.74
694 696 4.708726 TCCCGCAAACTCTTAGTACTAC 57.291 45.455 0.91 0.00 0.00 2.73
695 697 4.708421 ACATCCCGCAAACTCTTAGTACTA 59.292 41.667 0.00 0.00 0.00 1.82
696 698 3.514309 ACATCCCGCAAACTCTTAGTACT 59.486 43.478 0.00 0.00 0.00 2.73
697 699 3.858247 ACATCCCGCAAACTCTTAGTAC 58.142 45.455 0.00 0.00 0.00 2.73
698 700 3.512329 TGACATCCCGCAAACTCTTAGTA 59.488 43.478 0.00 0.00 0.00 1.82
699 701 2.301870 TGACATCCCGCAAACTCTTAGT 59.698 45.455 0.00 0.00 0.00 2.24
700 702 2.972625 TGACATCCCGCAAACTCTTAG 58.027 47.619 0.00 0.00 0.00 2.18
701 703 3.197766 AGATGACATCCCGCAAACTCTTA 59.802 43.478 11.92 0.00 0.00 2.10
702 704 2.026822 AGATGACATCCCGCAAACTCTT 60.027 45.455 11.92 0.00 0.00 2.85
703 705 1.556911 AGATGACATCCCGCAAACTCT 59.443 47.619 11.92 0.00 0.00 3.24
704 706 2.029838 AGATGACATCCCGCAAACTC 57.970 50.000 11.92 0.00 0.00 3.01
705 707 2.501723 ACTAGATGACATCCCGCAAACT 59.498 45.455 11.92 0.00 0.00 2.66
706 708 2.906354 ACTAGATGACATCCCGCAAAC 58.094 47.619 11.92 0.00 0.00 2.93
707 709 3.627395 AACTAGATGACATCCCGCAAA 57.373 42.857 11.92 0.00 0.00 3.68
708 710 3.958147 TCTAACTAGATGACATCCCGCAA 59.042 43.478 11.92 0.00 0.00 4.85
709 711 3.562182 TCTAACTAGATGACATCCCGCA 58.438 45.455 11.92 0.00 0.00 5.69
710 712 4.792521 ATCTAACTAGATGACATCCCGC 57.207 45.455 11.92 0.00 41.28 6.13
711 713 7.254137 CACATATCTAACTAGATGACATCCCG 58.746 42.308 11.92 5.99 42.66 5.14
712 714 7.038659 GCACATATCTAACTAGATGACATCCC 58.961 42.308 11.92 0.00 42.66 3.85
713 715 7.038659 GGCACATATCTAACTAGATGACATCC 58.961 42.308 11.92 2.75 42.66 3.51
714 716 7.606349 TGGCACATATCTAACTAGATGACATC 58.394 38.462 7.39 7.39 42.66 3.06
715 717 7.310299 CCTGGCACATATCTAACTAGATGACAT 60.310 40.741 9.13 0.00 42.66 3.06
716 718 6.015095 CCTGGCACATATCTAACTAGATGACA 60.015 42.308 9.13 2.30 42.66 3.58
717 719 6.393990 CCTGGCACATATCTAACTAGATGAC 58.606 44.000 9.13 0.00 42.66 3.06
718 720 5.047021 GCCTGGCACATATCTAACTAGATGA 60.047 44.000 15.17 0.00 42.66 2.92
719 721 5.174395 GCCTGGCACATATCTAACTAGATG 58.826 45.833 15.17 0.00 42.66 2.90
720 722 4.223923 GGCCTGGCACATATCTAACTAGAT 59.776 45.833 22.05 4.70 44.69 1.98
721 723 3.578716 GGCCTGGCACATATCTAACTAGA 59.421 47.826 22.05 0.00 38.20 2.43
722 724 3.324846 TGGCCTGGCACATATCTAACTAG 59.675 47.826 22.05 0.00 38.20 2.57
723 725 3.313791 TGGCCTGGCACATATCTAACTA 58.686 45.455 22.05 0.00 38.20 2.24
724 726 2.105477 CTGGCCTGGCACATATCTAACT 59.895 50.000 22.05 0.00 38.20 2.24
725 727 2.498167 CTGGCCTGGCACATATCTAAC 58.502 52.381 22.05 0.00 38.20 2.34
726 728 1.421268 CCTGGCCTGGCACATATCTAA 59.579 52.381 22.05 0.00 38.20 2.10
727 729 1.059098 CCTGGCCTGGCACATATCTA 58.941 55.000 22.05 0.00 38.20 1.98
728 730 1.842007 CCTGGCCTGGCACATATCT 59.158 57.895 22.05 0.00 38.20 1.98
729 731 4.488790 CCTGGCCTGGCACATATC 57.511 61.111 22.05 1.86 38.20 1.63
755 757 3.929334 TAACATGTGTGCCCGGCCC 62.929 63.158 7.03 0.00 0.00 5.80
756 758 1.974343 TTAACATGTGTGCCCGGCC 60.974 57.895 7.03 0.00 0.00 6.13
757 759 1.211709 GTTAACATGTGTGCCCGGC 59.788 57.895 1.04 1.04 0.00 6.13
758 760 1.499949 CGTTAACATGTGTGCCCGG 59.500 57.895 0.00 0.00 0.00 5.73
759 761 1.499949 CCGTTAACATGTGTGCCCG 59.500 57.895 0.00 0.00 0.00 6.13
760 762 1.880186 CCCGTTAACATGTGTGCCC 59.120 57.895 0.00 0.00 0.00 5.36
761 763 1.211709 GCCCGTTAACATGTGTGCC 59.788 57.895 0.00 0.00 0.00 5.01
762 764 0.109781 CAGCCCGTTAACATGTGTGC 60.110 55.000 0.00 0.00 0.00 4.57
763 765 0.521291 CCAGCCCGTTAACATGTGTG 59.479 55.000 0.00 0.00 0.00 3.82
764 766 1.241315 GCCAGCCCGTTAACATGTGT 61.241 55.000 0.00 0.00 0.00 3.72
765 767 1.240641 TGCCAGCCCGTTAACATGTG 61.241 55.000 0.00 0.00 0.00 3.21
766 768 0.323360 ATGCCAGCCCGTTAACATGT 60.323 50.000 6.39 0.00 0.00 3.21
767 769 0.101040 CATGCCAGCCCGTTAACATG 59.899 55.000 6.39 0.00 0.00 3.21
768 770 0.323360 ACATGCCAGCCCGTTAACAT 60.323 50.000 6.39 0.00 0.00 2.71
769 771 1.074072 ACATGCCAGCCCGTTAACA 59.926 52.632 6.39 0.00 0.00 2.41
770 772 0.958382 TCACATGCCAGCCCGTTAAC 60.958 55.000 0.00 0.00 0.00 2.01
771 773 0.958382 GTCACATGCCAGCCCGTTAA 60.958 55.000 0.00 0.00 0.00 2.01
772 774 1.376683 GTCACATGCCAGCCCGTTA 60.377 57.895 0.00 0.00 0.00 3.18
773 775 2.672996 GTCACATGCCAGCCCGTT 60.673 61.111 0.00 0.00 0.00 4.44
774 776 4.722700 GGTCACATGCCAGCCCGT 62.723 66.667 0.00 0.00 0.00 5.28
794 796 3.365265 CTCGTGCAAACCTGGCCC 61.365 66.667 0.00 0.00 0.00 5.80
795 797 3.365265 CCTCGTGCAAACCTGGCC 61.365 66.667 0.00 0.00 0.00 5.36
796 798 4.043200 GCCTCGTGCAAACCTGGC 62.043 66.667 0.00 0.00 40.77 4.85
805 807 0.942410 TACAACGACTTGCCTCGTGC 60.942 55.000 2.34 0.00 46.13 5.34
806 808 1.493772 TTACAACGACTTGCCTCGTG 58.506 50.000 2.34 1.05 46.13 4.35
808 810 2.572173 GTTTACAACGACTTGCCTCG 57.428 50.000 0.00 0.00 39.68 4.63
819 821 0.039527 CTGCTTGGCCCGTTTACAAC 60.040 55.000 0.00 0.00 0.00 3.32
820 822 1.801309 GCTGCTTGGCCCGTTTACAA 61.801 55.000 0.00 0.00 0.00 2.41
821 823 2.265182 GCTGCTTGGCCCGTTTACA 61.265 57.895 0.00 0.00 0.00 2.41
822 824 2.265182 TGCTGCTTGGCCCGTTTAC 61.265 57.895 0.00 0.00 0.00 2.01
823 825 2.114199 TGCTGCTTGGCCCGTTTA 59.886 55.556 0.00 0.00 0.00 2.01
824 826 3.605664 GTGCTGCTTGGCCCGTTT 61.606 61.111 0.00 0.00 0.00 3.60
825 827 4.892965 TGTGCTGCTTGGCCCGTT 62.893 61.111 0.00 0.00 0.00 4.44
828 830 3.677648 CAGTGTGCTGCTTGGCCC 61.678 66.667 0.00 0.00 35.77 5.80
829 831 3.677648 CCAGTGTGCTGCTTGGCC 61.678 66.667 0.00 0.00 41.26 5.36
830 832 2.595463 TCCAGTGTGCTGCTTGGC 60.595 61.111 0.00 0.00 41.26 4.52
831 833 1.228063 AGTCCAGTGTGCTGCTTGG 60.228 57.895 0.00 4.11 41.26 3.61
832 834 1.512996 CCAGTCCAGTGTGCTGCTTG 61.513 60.000 0.00 0.00 41.26 4.01
833 835 1.228063 CCAGTCCAGTGTGCTGCTT 60.228 57.895 0.00 0.00 41.26 3.91
834 836 2.429058 CCAGTCCAGTGTGCTGCT 59.571 61.111 0.00 0.00 41.26 4.24
835 837 2.670934 CCCAGTCCAGTGTGCTGC 60.671 66.667 0.00 0.00 41.26 5.25
836 838 1.149174 AACCCAGTCCAGTGTGCTG 59.851 57.895 4.69 4.69 42.22 4.41
837 839 1.149174 CAACCCAGTCCAGTGTGCT 59.851 57.895 0.00 0.00 0.00 4.40
838 840 1.898574 CCAACCCAGTCCAGTGTGC 60.899 63.158 0.00 0.00 0.00 4.57
839 841 0.535102 GTCCAACCCAGTCCAGTGTG 60.535 60.000 0.00 0.00 0.00 3.82
840 842 1.705997 GGTCCAACCCAGTCCAGTGT 61.706 60.000 0.00 0.00 30.04 3.55
841 843 1.073199 GGTCCAACCCAGTCCAGTG 59.927 63.158 0.00 0.00 30.04 3.66
842 844 1.385347 TGGTCCAACCCAGTCCAGT 60.385 57.895 0.00 0.00 37.50 4.00
843 845 1.376466 CTGGTCCAACCCAGTCCAG 59.624 63.158 0.00 0.00 45.81 3.86
844 846 3.574952 CTGGTCCAACCCAGTCCA 58.425 61.111 0.00 0.00 45.81 4.02
849 851 2.457323 GGTGGTCTGGTCCAACCCA 61.457 63.158 16.20 11.43 39.10 4.51
850 852 2.154074 AGGTGGTCTGGTCCAACCC 61.154 63.158 16.20 9.34 45.52 4.11
851 853 1.073199 CAGGTGGTCTGGTCCAACC 59.927 63.158 13.45 13.45 45.52 3.77
852 854 4.800554 CAGGTGGTCTGGTCCAAC 57.199 61.111 0.00 0.00 44.80 3.77
859 861 3.604582 GAGAAGATTTCCAGGTGGTCTG 58.395 50.000 0.00 0.00 43.00 3.51
860 862 2.573915 GGAGAAGATTTCCAGGTGGTCT 59.426 50.000 0.00 0.00 34.74 3.85
861 863 2.678190 CGGAGAAGATTTCCAGGTGGTC 60.678 54.545 0.00 0.00 34.24 4.02
862 864 1.279271 CGGAGAAGATTTCCAGGTGGT 59.721 52.381 0.00 0.00 34.24 4.16
863 865 1.555075 TCGGAGAAGATTTCCAGGTGG 59.445 52.381 0.00 0.00 34.24 4.61
864 866 2.622436 GTCGGAGAAGATTTCCAGGTG 58.378 52.381 0.00 0.00 39.69 4.00
865 867 1.555533 GGTCGGAGAAGATTTCCAGGT 59.444 52.381 0.00 0.00 39.69 4.00
866 868 1.134371 GGGTCGGAGAAGATTTCCAGG 60.134 57.143 0.00 0.00 39.69 4.45
867 869 1.134371 GGGGTCGGAGAAGATTTCCAG 60.134 57.143 0.00 0.00 39.69 3.86
868 870 0.909623 GGGGTCGGAGAAGATTTCCA 59.090 55.000 0.00 0.00 39.69 3.53
869 871 1.205055 AGGGGTCGGAGAAGATTTCC 58.795 55.000 0.00 0.00 39.69 3.13
870 872 4.482952 TTTAGGGGTCGGAGAAGATTTC 57.517 45.455 0.00 0.00 39.69 2.17
871 873 4.921644 TTTTAGGGGTCGGAGAAGATTT 57.078 40.909 0.00 0.00 39.69 2.17
872 874 4.921644 TTTTTAGGGGTCGGAGAAGATT 57.078 40.909 0.00 0.00 39.69 2.40
894 896 4.124238 TCGAATGTCGTGGAGAAGTTTTT 58.876 39.130 0.00 0.00 41.35 1.94
898 900 2.159226 GGATCGAATGTCGTGGAGAAGT 60.159 50.000 0.00 0.00 41.35 3.01
1410 1478 4.241555 AGCCCGGCGATGATGGAC 62.242 66.667 9.30 0.00 0.00 4.02
1430 1498 0.393132 GAAGAGGGGCAAGCAGTACC 60.393 60.000 0.00 0.00 0.00 3.34
1551 1622 4.082523 GCACCTAGCCCGCACTCA 62.083 66.667 0.00 0.00 37.23 3.41
1601 1672 3.995219 CTGATGCTGAGCGGCGACA 62.995 63.158 12.98 9.21 34.52 4.35
1750 7153 5.163447 ACCACCTGAACTTTTTCTTAAAGCC 60.163 40.000 0.00 0.00 32.36 4.35
1751 7154 5.902681 ACCACCTGAACTTTTTCTTAAAGC 58.097 37.500 0.00 0.00 32.36 3.51
1755 7158 4.131596 CCGACCACCTGAACTTTTTCTTA 58.868 43.478 0.00 0.00 32.36 2.10
1763 7166 1.296715 GCATCCGACCACCTGAACT 59.703 57.895 0.00 0.00 0.00 3.01
1822 7255 1.079750 GCAAGTCCTCGGACCTCAC 60.080 63.158 12.30 0.00 45.59 3.51
2789 8701 7.686438 AAATATGCCTGCACGATCAATATAA 57.314 32.000 0.00 0.00 0.00 0.98
2926 8865 5.072055 TGAAATTCTGCAAGATTCCAGACA 58.928 37.500 0.00 0.00 46.36 3.41
2964 8903 5.023533 TGGTTCATAGTCTAAGGTGCATC 57.976 43.478 0.00 0.00 0.00 3.91
3056 8998 2.939103 CCTTACTGCAAGCATACACCTC 59.061 50.000 0.00 0.00 37.60 3.85
3089 9031 8.425577 TCAGATCTCATTTCGGTCTTTAAATC 57.574 34.615 0.00 0.00 0.00 2.17
3101 9043 4.187694 GGACACACCTCAGATCTCATTTC 58.812 47.826 0.00 0.00 35.41 2.17
3104 9046 2.114616 GGGACACACCTCAGATCTCAT 58.885 52.381 0.00 0.00 38.98 2.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.