Multiple sequence alignment - TraesCS6D01G020600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G020600 chr6D 100.000 3158 0 0 1 3158 8148184 8145027 0.000000e+00 5832
1 TraesCS6D01G020600 chr6D 90.006 1791 128 25 980 2737 8249768 8251540 0.000000e+00 2268
2 TraesCS6D01G020600 chr6D 81.999 1711 264 30 463 2159 8244958 8246638 0.000000e+00 1413
3 TraesCS6D01G020600 chr6D 79.894 1129 188 24 1071 2183 7423991 7422886 0.000000e+00 791
4 TraesCS6D01G020600 chr6A 89.391 1904 139 21 924 2800 8624572 8622705 0.000000e+00 2338
5 TraesCS6D01G020600 chr6A 90.285 1791 134 19 901 2675 8712165 8713931 0.000000e+00 2307
6 TraesCS6D01G020600 chr6B 89.961 1524 100 22 826 2336 15115841 15114358 0.000000e+00 1917
7 TraesCS6D01G020600 chr6B 91.625 1385 75 9 829 2183 21458524 21459897 0.000000e+00 1877
8 TraesCS6D01G020600 chr6B 76.829 1476 286 36 982 2424 15249521 15248069 0.000000e+00 780
9 TraesCS6D01G020600 chr6B 78.322 1204 234 21 968 2160 52568273 52567086 0.000000e+00 752
10 TraesCS6D01G020600 chr6B 78.747 1101 216 13 1068 2159 14303367 14304458 0.000000e+00 721
11 TraesCS6D01G020600 chr6B 77.606 1228 245 21 977 2183 14455058 14453840 0.000000e+00 717
12 TraesCS6D01G020600 chr6B 89.824 511 34 8 2371 2870 15114362 15113859 9.550000e-180 640
13 TraesCS6D01G020600 chr6B 77.976 1008 199 12 1520 2509 65158559 65157557 7.490000e-171 610
14 TraesCS6D01G020600 chr6B 76.211 1135 246 20 1063 2183 14550142 14549018 2.110000e-161 579
15 TraesCS6D01G020600 chr6B 89.286 308 22 1 2851 3158 15113842 15113546 2.970000e-100 375
16 TraesCS6D01G020600 chr2B 77.096 1467 287 33 994 2424 89494613 89496066 0.000000e+00 802
17 TraesCS6D01G020600 chr4A 78.463 1119 219 15 1043 2150 667425385 667426492 0.000000e+00 712


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G020600 chr6D 8145027 8148184 3157 True 5832.000000 5832 100.000000 1 3158 1 chr6D.!!$R2 3157
1 TraesCS6D01G020600 chr6D 8244958 8251540 6582 False 1840.500000 2268 86.002500 463 2737 2 chr6D.!!$F1 2274
2 TraesCS6D01G020600 chr6D 7422886 7423991 1105 True 791.000000 791 79.894000 1071 2183 1 chr6D.!!$R1 1112
3 TraesCS6D01G020600 chr6A 8622705 8624572 1867 True 2338.000000 2338 89.391000 924 2800 1 chr6A.!!$R1 1876
4 TraesCS6D01G020600 chr6A 8712165 8713931 1766 False 2307.000000 2307 90.285000 901 2675 1 chr6A.!!$F1 1774
5 TraesCS6D01G020600 chr6B 21458524 21459897 1373 False 1877.000000 1877 91.625000 829 2183 1 chr6B.!!$F2 1354
6 TraesCS6D01G020600 chr6B 15113546 15115841 2295 True 977.333333 1917 89.690333 826 3158 3 chr6B.!!$R6 2332
7 TraesCS6D01G020600 chr6B 15248069 15249521 1452 True 780.000000 780 76.829000 982 2424 1 chr6B.!!$R3 1442
8 TraesCS6D01G020600 chr6B 52567086 52568273 1187 True 752.000000 752 78.322000 968 2160 1 chr6B.!!$R4 1192
9 TraesCS6D01G020600 chr6B 14303367 14304458 1091 False 721.000000 721 78.747000 1068 2159 1 chr6B.!!$F1 1091
10 TraesCS6D01G020600 chr6B 14453840 14455058 1218 True 717.000000 717 77.606000 977 2183 1 chr6B.!!$R1 1206
11 TraesCS6D01G020600 chr6B 65157557 65158559 1002 True 610.000000 610 77.976000 1520 2509 1 chr6B.!!$R5 989
12 TraesCS6D01G020600 chr6B 14549018 14550142 1124 True 579.000000 579 76.211000 1063 2183 1 chr6B.!!$R2 1120
13 TraesCS6D01G020600 chr2B 89494613 89496066 1453 False 802.000000 802 77.096000 994 2424 1 chr2B.!!$F1 1430
14 TraesCS6D01G020600 chr4A 667425385 667426492 1107 False 712.000000 712 78.463000 1043 2150 1 chr4A.!!$F1 1107

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
167 168 0.103208 ACGCGTTGGGAAATTTGCAA 59.897 45.0 5.58 0.0 0.00 4.08 F
271 272 0.106868 TCTAGGATCCGCCGTGAAGA 60.107 55.0 5.98 0.0 43.43 2.87 F
277 278 0.179108 ATCCGCCGTGAAGAGTTAGC 60.179 55.0 0.00 0.0 0.00 3.09 F
389 390 0.252284 AGGATCTCACCGTCCACCTT 60.252 55.0 0.00 0.0 36.96 3.50 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1011 1062 1.078848 GGTGAGGATGCAGCTTCGT 60.079 57.895 9.66 3.28 33.68 3.85 R
2036 6430 2.361119 TCCATGAATACCTTCGGAGTCG 59.639 50.000 0.00 0.00 33.86 4.18 R
2135 6529 7.828717 TGTTTCATGTAAATCTGAATCTAGCCA 59.171 33.333 0.00 0.00 31.83 4.75 R
2285 6710 4.373156 ACTGATACTTCAAAGGGCTTGT 57.627 40.909 0.00 0.00 36.34 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 4.778534 CAGATCATGTCCACTGCTTTTT 57.221 40.909 0.00 0.00 0.00 1.94
56 57 8.716646 ACATGCACCTAAATTATTTAAAAGCC 57.283 30.769 0.00 0.00 0.00 4.35
57 58 8.539544 ACATGCACCTAAATTATTTAAAAGCCT 58.460 29.630 0.00 0.00 0.00 4.58
91 92 9.982651 TGTTATAAGCATATAAGACCTCAAGTC 57.017 33.333 1.72 0.00 46.71 3.01
110 111 3.921119 TCAAGTCAATGACACAATGCC 57.079 42.857 16.38 0.00 34.60 4.40
111 112 3.220940 TCAAGTCAATGACACAATGCCA 58.779 40.909 16.38 0.00 34.60 4.92
112 113 3.635836 TCAAGTCAATGACACAATGCCAA 59.364 39.130 16.38 0.00 34.60 4.52
113 114 3.648339 AGTCAATGACACAATGCCAAC 57.352 42.857 16.38 0.00 34.60 3.77
114 115 2.030893 AGTCAATGACACAATGCCAACG 60.031 45.455 16.38 0.00 34.60 4.10
115 116 1.062258 CAATGACACAATGCCAACGC 58.938 50.000 0.00 0.00 0.00 4.84
116 117 5.930262 GTCAATGACACAATGCCAACGCA 62.930 47.826 8.74 0.00 40.02 5.24
128 129 4.792521 TGCCAACGCAAATTAAAGGTAT 57.207 36.364 0.00 0.00 43.74 2.73
129 130 5.899120 TGCCAACGCAAATTAAAGGTATA 57.101 34.783 0.00 0.00 43.74 1.47
130 131 6.268825 TGCCAACGCAAATTAAAGGTATAA 57.731 33.333 0.00 0.00 43.74 0.98
131 132 6.688578 TGCCAACGCAAATTAAAGGTATAAA 58.311 32.000 0.00 0.00 43.74 1.40
132 133 6.809196 TGCCAACGCAAATTAAAGGTATAAAG 59.191 34.615 0.00 0.00 43.74 1.85
133 134 7.030768 GCCAACGCAAATTAAAGGTATAAAGA 58.969 34.615 0.00 0.00 34.03 2.52
134 135 7.008901 GCCAACGCAAATTAAAGGTATAAAGAC 59.991 37.037 0.00 0.00 34.03 3.01
135 136 7.486870 CCAACGCAAATTAAAGGTATAAAGACC 59.513 37.037 0.00 0.00 40.08 3.85
146 147 5.024785 GGTATAAAGACCTTGCTGCTACT 57.975 43.478 0.00 0.00 36.47 2.57
147 148 4.811557 GGTATAAAGACCTTGCTGCTACTG 59.188 45.833 0.00 0.00 36.47 2.74
148 149 4.826274 ATAAAGACCTTGCTGCTACTGA 57.174 40.909 0.00 0.00 0.00 3.41
149 150 2.464157 AAGACCTTGCTGCTACTGAC 57.536 50.000 0.00 0.00 0.00 3.51
150 151 0.244994 AGACCTTGCTGCTACTGACG 59.755 55.000 0.00 0.00 0.00 4.35
151 152 1.355066 GACCTTGCTGCTACTGACGC 61.355 60.000 0.00 0.00 0.00 5.19
152 153 2.447887 CCTTGCTGCTACTGACGCG 61.448 63.158 3.53 3.53 0.00 6.01
153 154 1.734477 CTTGCTGCTACTGACGCGT 60.734 57.895 13.85 13.85 0.00 6.01
154 155 1.284982 CTTGCTGCTACTGACGCGTT 61.285 55.000 15.53 0.00 0.00 4.84
155 156 1.556591 TTGCTGCTACTGACGCGTTG 61.557 55.000 15.53 12.65 0.00 4.10
156 157 2.730672 GCTGCTACTGACGCGTTGG 61.731 63.158 15.53 12.18 0.00 3.77
157 158 2.048597 TGCTACTGACGCGTTGGG 60.049 61.111 15.53 9.40 0.00 4.12
158 159 2.260434 GCTACTGACGCGTTGGGA 59.740 61.111 15.53 5.04 0.00 4.37
159 160 1.373748 GCTACTGACGCGTTGGGAA 60.374 57.895 15.53 0.00 0.00 3.97
160 161 0.947180 GCTACTGACGCGTTGGGAAA 60.947 55.000 15.53 0.00 0.00 3.13
161 162 1.722011 CTACTGACGCGTTGGGAAAT 58.278 50.000 15.53 0.00 0.00 2.17
162 163 2.073816 CTACTGACGCGTTGGGAAATT 58.926 47.619 15.53 0.00 0.00 1.82
163 164 1.314730 ACTGACGCGTTGGGAAATTT 58.685 45.000 15.53 0.00 0.00 1.82
164 165 1.001815 ACTGACGCGTTGGGAAATTTG 60.002 47.619 15.53 0.00 0.00 2.32
165 166 0.318275 TGACGCGTTGGGAAATTTGC 60.318 50.000 15.53 0.22 0.00 3.68
166 167 0.318275 GACGCGTTGGGAAATTTGCA 60.318 50.000 15.53 0.00 0.00 4.08
167 168 0.103208 ACGCGTTGGGAAATTTGCAA 59.897 45.000 5.58 0.00 0.00 4.08
168 169 0.783579 CGCGTTGGGAAATTTGCAAG 59.216 50.000 12.05 0.96 0.00 4.01
169 170 1.601663 CGCGTTGGGAAATTTGCAAGA 60.602 47.619 12.05 0.00 0.00 3.02
170 171 2.478831 GCGTTGGGAAATTTGCAAGAA 58.521 42.857 12.05 0.00 0.00 2.52
171 172 2.869192 GCGTTGGGAAATTTGCAAGAAA 59.131 40.909 12.05 0.00 0.00 2.52
172 173 3.059665 GCGTTGGGAAATTTGCAAGAAAG 60.060 43.478 12.05 4.85 0.00 2.62
173 174 3.494251 CGTTGGGAAATTTGCAAGAAAGG 59.506 43.478 12.05 2.82 0.00 3.11
174 175 4.702831 GTTGGGAAATTTGCAAGAAAGGA 58.297 39.130 12.05 0.00 0.00 3.36
175 176 5.122519 GTTGGGAAATTTGCAAGAAAGGAA 58.877 37.500 12.05 0.00 0.00 3.36
176 177 4.702831 TGGGAAATTTGCAAGAAAGGAAC 58.297 39.130 12.05 0.00 0.00 3.62
178 179 4.751600 GGGAAATTTGCAAGAAAGGAACTG 59.248 41.667 12.05 0.00 40.86 3.16
179 180 5.359756 GGAAATTTGCAAGAAAGGAACTGT 58.640 37.500 4.63 0.00 40.86 3.55
180 181 5.817296 GGAAATTTGCAAGAAAGGAACTGTT 59.183 36.000 4.63 0.00 40.86 3.16
181 182 6.238184 GGAAATTTGCAAGAAAGGAACTGTTG 60.238 38.462 4.63 0.00 40.86 3.33
182 183 4.799564 TTTGCAAGAAAGGAACTGTTGT 57.200 36.364 0.00 0.00 40.86 3.32
183 184 5.906113 TTTGCAAGAAAGGAACTGTTGTA 57.094 34.783 0.00 0.00 40.86 2.41
184 185 4.893424 TGCAAGAAAGGAACTGTTGTAC 57.107 40.909 0.00 0.00 40.86 2.90
185 186 4.523083 TGCAAGAAAGGAACTGTTGTACT 58.477 39.130 0.00 0.00 40.86 2.73
186 187 4.947388 TGCAAGAAAGGAACTGTTGTACTT 59.053 37.500 0.00 0.00 40.86 2.24
187 188 5.417580 TGCAAGAAAGGAACTGTTGTACTTT 59.582 36.000 0.00 6.02 40.86 2.66
188 189 6.071616 TGCAAGAAAGGAACTGTTGTACTTTT 60.072 34.615 0.00 0.00 40.86 2.27
189 190 7.121463 TGCAAGAAAGGAACTGTTGTACTTTTA 59.879 33.333 0.00 0.00 40.86 1.52
190 191 7.644157 GCAAGAAAGGAACTGTTGTACTTTTAG 59.356 37.037 0.00 2.57 40.86 1.85
191 192 8.889717 CAAGAAAGGAACTGTTGTACTTTTAGA 58.110 33.333 0.00 0.00 40.86 2.10
192 193 8.664211 AGAAAGGAACTGTTGTACTTTTAGAG 57.336 34.615 0.00 0.00 40.86 2.43
193 194 7.715686 AGAAAGGAACTGTTGTACTTTTAGAGG 59.284 37.037 0.00 0.00 40.86 3.69
194 195 6.496144 AGGAACTGTTGTACTTTTAGAGGT 57.504 37.500 0.00 0.00 37.18 3.85
195 196 7.607615 AGGAACTGTTGTACTTTTAGAGGTA 57.392 36.000 0.00 0.00 37.18 3.08
196 197 8.026396 AGGAACTGTTGTACTTTTAGAGGTAA 57.974 34.615 0.00 0.00 37.18 2.85
197 198 8.148999 AGGAACTGTTGTACTTTTAGAGGTAAG 58.851 37.037 0.00 0.00 37.18 2.34
198 199 7.095313 GGAACTGTTGTACTTTTAGAGGTAAGC 60.095 40.741 0.00 0.00 0.00 3.09
199 200 5.924825 ACTGTTGTACTTTTAGAGGTAAGCG 59.075 40.000 0.00 0.00 0.00 4.68
200 201 5.232463 TGTTGTACTTTTAGAGGTAAGCGG 58.768 41.667 0.00 0.00 0.00 5.52
201 202 5.221501 TGTTGTACTTTTAGAGGTAAGCGGT 60.222 40.000 0.00 0.00 0.00 5.68
202 203 5.064441 TGTACTTTTAGAGGTAAGCGGTC 57.936 43.478 0.00 0.00 0.00 4.79
203 204 4.523943 TGTACTTTTAGAGGTAAGCGGTCA 59.476 41.667 0.00 0.00 0.00 4.02
204 205 4.820894 ACTTTTAGAGGTAAGCGGTCAT 57.179 40.909 0.00 0.00 0.00 3.06
205 206 4.756502 ACTTTTAGAGGTAAGCGGTCATC 58.243 43.478 0.00 0.00 0.00 2.92
206 207 3.814005 TTTAGAGGTAAGCGGTCATCC 57.186 47.619 0.00 0.00 0.00 3.51
207 208 2.447408 TAGAGGTAAGCGGTCATCCA 57.553 50.000 0.00 0.00 0.00 3.41
208 209 0.824759 AGAGGTAAGCGGTCATCCAC 59.175 55.000 0.00 0.00 0.00 4.02
209 210 0.824759 GAGGTAAGCGGTCATCCACT 59.175 55.000 0.00 0.00 0.00 4.00
210 211 0.824759 AGGTAAGCGGTCATCCACTC 59.175 55.000 0.00 0.00 0.00 3.51
211 212 0.535335 GGTAAGCGGTCATCCACTCA 59.465 55.000 0.00 0.00 0.00 3.41
212 213 1.139058 GGTAAGCGGTCATCCACTCAT 59.861 52.381 0.00 0.00 0.00 2.90
213 214 2.474816 GTAAGCGGTCATCCACTCATC 58.525 52.381 0.00 0.00 0.00 2.92
214 215 0.179000 AAGCGGTCATCCACTCATCC 59.821 55.000 0.00 0.00 0.00 3.51
215 216 0.689080 AGCGGTCATCCACTCATCCT 60.689 55.000 0.00 0.00 0.00 3.24
216 217 1.040646 GCGGTCATCCACTCATCCTA 58.959 55.000 0.00 0.00 0.00 2.94
217 218 1.620819 GCGGTCATCCACTCATCCTAT 59.379 52.381 0.00 0.00 0.00 2.57
218 219 2.353208 GCGGTCATCCACTCATCCTATC 60.353 54.545 0.00 0.00 0.00 2.08
219 220 2.232452 CGGTCATCCACTCATCCTATCC 59.768 54.545 0.00 0.00 0.00 2.59
220 221 3.242867 GGTCATCCACTCATCCTATCCA 58.757 50.000 0.00 0.00 0.00 3.41
221 222 3.260380 GGTCATCCACTCATCCTATCCAG 59.740 52.174 0.00 0.00 0.00 3.86
222 223 4.155709 GTCATCCACTCATCCTATCCAGA 58.844 47.826 0.00 0.00 0.00 3.86
223 224 4.776837 GTCATCCACTCATCCTATCCAGAT 59.223 45.833 0.00 0.00 0.00 2.90
224 225 5.954752 GTCATCCACTCATCCTATCCAGATA 59.045 44.000 0.00 0.00 0.00 1.98
225 226 6.610830 GTCATCCACTCATCCTATCCAGATAT 59.389 42.308 0.00 0.00 0.00 1.63
226 227 6.838090 TCATCCACTCATCCTATCCAGATATC 59.162 42.308 0.00 0.00 0.00 1.63
227 228 5.523588 TCCACTCATCCTATCCAGATATCC 58.476 45.833 0.00 0.00 0.00 2.59
228 229 5.257339 TCCACTCATCCTATCCAGATATCCT 59.743 44.000 0.00 0.00 0.00 3.24
229 230 6.451669 TCCACTCATCCTATCCAGATATCCTA 59.548 42.308 0.00 0.00 0.00 2.94
230 231 7.035838 TCCACTCATCCTATCCAGATATCCTAA 60.036 40.741 0.00 0.00 0.00 2.69
231 232 7.621285 CCACTCATCCTATCCAGATATCCTAAA 59.379 40.741 0.00 0.00 0.00 1.85
232 233 8.474025 CACTCATCCTATCCAGATATCCTAAAC 58.526 40.741 0.00 0.00 0.00 2.01
233 234 7.340743 ACTCATCCTATCCAGATATCCTAAACG 59.659 40.741 0.00 0.00 0.00 3.60
234 235 5.916661 TCCTATCCAGATATCCTAAACGC 57.083 43.478 0.00 0.00 0.00 4.84
235 236 4.710375 TCCTATCCAGATATCCTAAACGCC 59.290 45.833 0.00 0.00 0.00 5.68
236 237 4.466370 CCTATCCAGATATCCTAAACGCCA 59.534 45.833 0.00 0.00 0.00 5.69
237 238 5.129485 CCTATCCAGATATCCTAAACGCCAT 59.871 44.000 0.00 0.00 0.00 4.40
238 239 4.537135 TCCAGATATCCTAAACGCCATC 57.463 45.455 0.00 0.00 0.00 3.51
239 240 4.160329 TCCAGATATCCTAAACGCCATCT 58.840 43.478 0.00 0.00 0.00 2.90
240 241 4.220821 TCCAGATATCCTAAACGCCATCTC 59.779 45.833 0.00 0.00 0.00 2.75
241 242 4.021104 CCAGATATCCTAAACGCCATCTCA 60.021 45.833 0.00 0.00 0.00 3.27
242 243 5.167121 CAGATATCCTAAACGCCATCTCAG 58.833 45.833 0.00 0.00 0.00 3.35
243 244 5.047731 CAGATATCCTAAACGCCATCTCAGA 60.048 44.000 0.00 0.00 0.00 3.27
244 245 3.742433 ATCCTAAACGCCATCTCAGAG 57.258 47.619 0.00 0.00 0.00 3.35
245 246 2.735151 TCCTAAACGCCATCTCAGAGA 58.265 47.619 1.54 1.54 0.00 3.10
246 247 2.690497 TCCTAAACGCCATCTCAGAGAG 59.310 50.000 6.24 0.00 0.00 3.20
247 248 2.690497 CCTAAACGCCATCTCAGAGAGA 59.310 50.000 6.24 1.59 43.20 3.10
248 249 2.663826 AAACGCCATCTCAGAGAGAC 57.336 50.000 6.24 0.00 41.76 3.36
249 250 0.820871 AACGCCATCTCAGAGAGACC 59.179 55.000 6.24 0.00 41.76 3.85
250 251 1.040339 ACGCCATCTCAGAGAGACCC 61.040 60.000 6.24 0.00 41.76 4.46
251 252 0.754957 CGCCATCTCAGAGAGACCCT 60.755 60.000 6.24 0.00 41.76 4.34
252 253 1.494960 GCCATCTCAGAGAGACCCTT 58.505 55.000 6.24 0.00 41.76 3.95
253 254 1.412343 GCCATCTCAGAGAGACCCTTC 59.588 57.143 6.24 0.00 41.76 3.46
254 255 2.954539 GCCATCTCAGAGAGACCCTTCT 60.955 54.545 6.24 0.00 41.76 2.85
255 256 3.689858 GCCATCTCAGAGAGACCCTTCTA 60.690 52.174 6.24 0.00 41.76 2.10
256 257 4.144297 CCATCTCAGAGAGACCCTTCTAG 58.856 52.174 6.24 0.00 41.76 2.43
257 258 3.943671 TCTCAGAGAGACCCTTCTAGG 57.056 52.381 0.00 0.00 33.35 3.02
258 259 3.465832 TCTCAGAGAGACCCTTCTAGGA 58.534 50.000 0.00 0.00 33.47 2.94
259 260 4.051478 TCTCAGAGAGACCCTTCTAGGAT 58.949 47.826 0.00 0.00 33.47 3.24
260 261 4.104102 TCTCAGAGAGACCCTTCTAGGATC 59.896 50.000 0.00 0.00 33.47 3.36
261 262 3.139397 TCAGAGAGACCCTTCTAGGATCC 59.861 52.174 2.48 2.48 37.67 3.36
262 263 2.107552 AGAGAGACCCTTCTAGGATCCG 59.892 54.545 5.98 0.00 37.67 4.18
263 264 0.963225 GAGACCCTTCTAGGATCCGC 59.037 60.000 5.98 0.00 37.67 5.54
264 265 0.470268 AGACCCTTCTAGGATCCGCC 60.470 60.000 5.98 0.00 37.67 6.13
265 266 1.807495 GACCCTTCTAGGATCCGCCG 61.807 65.000 5.98 0.00 43.43 6.46
266 267 1.833049 CCCTTCTAGGATCCGCCGT 60.833 63.158 5.98 0.00 43.43 5.68
267 268 1.364171 CCTTCTAGGATCCGCCGTG 59.636 63.158 5.98 0.00 43.43 4.94
268 269 1.107538 CCTTCTAGGATCCGCCGTGA 61.108 60.000 5.98 0.00 43.43 4.35
269 270 0.744874 CTTCTAGGATCCGCCGTGAA 59.255 55.000 5.98 6.89 43.43 3.18
270 271 0.744874 TTCTAGGATCCGCCGTGAAG 59.255 55.000 5.98 0.00 43.43 3.02
271 272 0.106868 TCTAGGATCCGCCGTGAAGA 60.107 55.000 5.98 0.00 43.43 2.87
272 273 0.312416 CTAGGATCCGCCGTGAAGAG 59.688 60.000 5.98 0.00 43.43 2.85
273 274 0.395311 TAGGATCCGCCGTGAAGAGT 60.395 55.000 5.98 0.00 43.43 3.24
274 275 1.218316 GGATCCGCCGTGAAGAGTT 59.782 57.895 0.00 0.00 0.00 3.01
275 276 0.458669 GGATCCGCCGTGAAGAGTTA 59.541 55.000 0.00 0.00 0.00 2.24
276 277 1.536284 GGATCCGCCGTGAAGAGTTAG 60.536 57.143 0.00 0.00 0.00 2.34
277 278 0.179108 ATCCGCCGTGAAGAGTTAGC 60.179 55.000 0.00 0.00 0.00 3.09
278 279 1.215647 CCGCCGTGAAGAGTTAGCT 59.784 57.895 0.00 0.00 0.00 3.32
279 280 0.454600 CCGCCGTGAAGAGTTAGCTA 59.545 55.000 0.00 0.00 0.00 3.32
280 281 1.067212 CCGCCGTGAAGAGTTAGCTAT 59.933 52.381 0.00 0.00 0.00 2.97
281 282 2.292569 CCGCCGTGAAGAGTTAGCTATA 59.707 50.000 0.00 0.00 0.00 1.31
282 283 3.556513 CGCCGTGAAGAGTTAGCTATAG 58.443 50.000 0.00 0.00 0.00 1.31
283 284 3.003482 CGCCGTGAAGAGTTAGCTATAGT 59.997 47.826 0.84 0.00 0.00 2.12
284 285 4.497674 CGCCGTGAAGAGTTAGCTATAGTT 60.498 45.833 0.84 0.00 0.00 2.24
285 286 4.977347 GCCGTGAAGAGTTAGCTATAGTTC 59.023 45.833 0.84 0.00 0.00 3.01
286 287 5.521544 CCGTGAAGAGTTAGCTATAGTTCC 58.478 45.833 0.84 0.00 0.00 3.62
287 288 5.299782 CCGTGAAGAGTTAGCTATAGTTCCT 59.700 44.000 0.84 0.00 0.00 3.36
288 289 6.183360 CCGTGAAGAGTTAGCTATAGTTCCTT 60.183 42.308 0.84 0.00 0.00 3.36
289 290 7.259161 CGTGAAGAGTTAGCTATAGTTCCTTT 58.741 38.462 0.84 0.00 0.00 3.11
290 291 7.221067 CGTGAAGAGTTAGCTATAGTTCCTTTG 59.779 40.741 0.84 0.00 0.00 2.77
291 292 7.492994 GTGAAGAGTTAGCTATAGTTCCTTTGG 59.507 40.741 0.84 0.00 0.00 3.28
292 293 5.919755 AGAGTTAGCTATAGTTCCTTTGGC 58.080 41.667 0.84 0.00 0.00 4.52
293 294 5.037383 AGTTAGCTATAGTTCCTTTGGCC 57.963 43.478 0.00 0.00 0.00 5.36
294 295 4.473559 AGTTAGCTATAGTTCCTTTGGCCA 59.526 41.667 0.00 0.00 0.00 5.36
295 296 3.567478 AGCTATAGTTCCTTTGGCCAG 57.433 47.619 5.11 0.00 0.00 4.85
296 297 2.173569 AGCTATAGTTCCTTTGGCCAGG 59.826 50.000 5.11 4.81 34.86 4.45
297 298 2.576615 CTATAGTTCCTTTGGCCAGGC 58.423 52.381 5.11 1.26 33.35 4.85
298 299 0.394352 ATAGTTCCTTTGGCCAGGCG 60.394 55.000 5.11 0.00 33.35 5.52
299 300 1.485294 TAGTTCCTTTGGCCAGGCGA 61.485 55.000 5.11 0.00 33.35 5.54
300 301 2.034066 TTCCTTTGGCCAGGCGAG 59.966 61.111 5.11 3.17 33.35 5.03
301 302 2.829384 TTCCTTTGGCCAGGCGAGT 61.829 57.895 5.11 0.00 33.35 4.18
302 303 2.282462 CCTTTGGCCAGGCGAGTT 60.282 61.111 5.11 0.00 0.00 3.01
303 304 2.629656 CCTTTGGCCAGGCGAGTTG 61.630 63.158 5.11 0.00 0.00 3.16
304 305 1.600636 CTTTGGCCAGGCGAGTTGA 60.601 57.895 5.11 0.00 0.00 3.18
305 306 0.962356 CTTTGGCCAGGCGAGTTGAT 60.962 55.000 5.11 0.00 0.00 2.57
306 307 0.960364 TTTGGCCAGGCGAGTTGATC 60.960 55.000 5.11 0.00 0.00 2.92
315 316 4.467084 GAGTTGATCGGCCGGCCA 62.467 66.667 42.78 30.05 35.37 5.36
316 317 3.757248 GAGTTGATCGGCCGGCCAT 62.757 63.158 42.78 33.00 35.37 4.40
317 318 3.279875 GTTGATCGGCCGGCCATC 61.280 66.667 42.78 37.17 35.37 3.51
318 319 3.791586 TTGATCGGCCGGCCATCA 61.792 61.111 42.78 38.92 34.37 3.07
319 320 3.118768 TTGATCGGCCGGCCATCAT 62.119 57.895 38.29 30.55 35.34 2.45
320 321 2.281761 GATCGGCCGGCCATCATT 60.282 61.111 42.78 22.92 35.37 2.57
321 322 1.898574 GATCGGCCGGCCATCATTT 60.899 57.895 42.78 21.07 35.37 2.32
322 323 1.455383 GATCGGCCGGCCATCATTTT 61.455 55.000 42.78 19.61 35.37 1.82
323 324 1.455383 ATCGGCCGGCCATCATTTTC 61.455 55.000 42.78 14.89 35.37 2.29
324 325 2.120909 CGGCCGGCCATCATTTTCT 61.121 57.895 42.78 0.00 35.37 2.52
325 326 1.438814 GGCCGGCCATCATTTTCTG 59.561 57.895 40.73 0.00 35.81 3.02
326 327 1.322538 GGCCGGCCATCATTTTCTGT 61.323 55.000 40.73 0.00 35.81 3.41
327 328 0.532115 GCCGGCCATCATTTTCTGTT 59.468 50.000 18.11 0.00 0.00 3.16
328 329 1.066929 GCCGGCCATCATTTTCTGTTT 60.067 47.619 18.11 0.00 0.00 2.83
329 330 2.879826 CCGGCCATCATTTTCTGTTTC 58.120 47.619 2.24 0.00 0.00 2.78
330 331 2.493278 CCGGCCATCATTTTCTGTTTCT 59.507 45.455 2.24 0.00 0.00 2.52
331 332 3.428045 CCGGCCATCATTTTCTGTTTCTC 60.428 47.826 2.24 0.00 0.00 2.87
332 333 3.441572 CGGCCATCATTTTCTGTTTCTCT 59.558 43.478 2.24 0.00 0.00 3.10
333 334 4.082571 CGGCCATCATTTTCTGTTTCTCTT 60.083 41.667 2.24 0.00 0.00 2.85
334 335 5.405797 GGCCATCATTTTCTGTTTCTCTTC 58.594 41.667 0.00 0.00 0.00 2.87
335 336 5.184671 GGCCATCATTTTCTGTTTCTCTTCT 59.815 40.000 0.00 0.00 0.00 2.85
336 337 6.294955 GGCCATCATTTTCTGTTTCTCTTCTT 60.295 38.462 0.00 0.00 0.00 2.52
337 338 7.150640 GCCATCATTTTCTGTTTCTCTTCTTT 58.849 34.615 0.00 0.00 0.00 2.52
338 339 7.654923 GCCATCATTTTCTGTTTCTCTTCTTTT 59.345 33.333 0.00 0.00 0.00 2.27
339 340 9.538508 CCATCATTTTCTGTTTCTCTTCTTTTT 57.461 29.630 0.00 0.00 0.00 1.94
349 350 9.508567 CTGTTTCTCTTCTTTTTAGTCTTTTGG 57.491 33.333 0.00 0.00 0.00 3.28
350 351 9.020731 TGTTTCTCTTCTTTTTAGTCTTTTGGT 57.979 29.630 0.00 0.00 0.00 3.67
351 352 9.290483 GTTTCTCTTCTTTTTAGTCTTTTGGTG 57.710 33.333 0.00 0.00 0.00 4.17
352 353 8.575649 TTCTCTTCTTTTTAGTCTTTTGGTGT 57.424 30.769 0.00 0.00 0.00 4.16
353 354 8.575649 TCTCTTCTTTTTAGTCTTTTGGTGTT 57.424 30.769 0.00 0.00 0.00 3.32
354 355 8.674607 TCTCTTCTTTTTAGTCTTTTGGTGTTC 58.325 33.333 0.00 0.00 0.00 3.18
355 356 7.768240 TCTTCTTTTTAGTCTTTTGGTGTTCC 58.232 34.615 0.00 0.00 0.00 3.62
356 357 7.614192 TCTTCTTTTTAGTCTTTTGGTGTTCCT 59.386 33.333 0.00 0.00 34.23 3.36
357 358 7.329588 TCTTTTTAGTCTTTTGGTGTTCCTC 57.670 36.000 0.00 0.00 34.23 3.71
358 359 7.116736 TCTTTTTAGTCTTTTGGTGTTCCTCT 58.883 34.615 0.00 0.00 34.23 3.69
359 360 6.693315 TTTTAGTCTTTTGGTGTTCCTCTG 57.307 37.500 0.00 0.00 34.23 3.35
360 361 5.623956 TTAGTCTTTTGGTGTTCCTCTGA 57.376 39.130 0.00 0.00 34.23 3.27
361 362 4.503714 AGTCTTTTGGTGTTCCTCTGAA 57.496 40.909 0.00 0.00 34.23 3.02
372 373 4.048241 GTTCCTCTGAACCGATCTTAGG 57.952 50.000 0.00 0.00 44.20 2.69
373 374 3.664551 TCCTCTGAACCGATCTTAGGA 57.335 47.619 0.00 0.00 37.34 2.94
374 375 4.186077 TCCTCTGAACCGATCTTAGGAT 57.814 45.455 0.00 0.00 35.81 3.24
375 376 4.145807 TCCTCTGAACCGATCTTAGGATC 58.854 47.826 4.78 4.78 43.48 3.36
376 377 4.141135 TCCTCTGAACCGATCTTAGGATCT 60.141 45.833 12.51 0.00 44.42 2.75
377 378 4.217550 CCTCTGAACCGATCTTAGGATCTC 59.782 50.000 12.51 4.79 44.42 2.75
378 379 4.793201 TCTGAACCGATCTTAGGATCTCA 58.207 43.478 12.51 8.66 44.42 3.27
379 380 4.580995 TCTGAACCGATCTTAGGATCTCAC 59.419 45.833 12.51 3.22 44.42 3.51
380 381 3.637229 TGAACCGATCTTAGGATCTCACC 59.363 47.826 12.51 1.50 44.42 4.02
381 382 2.231529 ACCGATCTTAGGATCTCACCG 58.768 52.381 12.51 0.28 44.42 4.94
382 383 2.231529 CCGATCTTAGGATCTCACCGT 58.768 52.381 12.51 0.00 44.42 4.83
383 384 2.226912 CCGATCTTAGGATCTCACCGTC 59.773 54.545 12.51 0.00 44.42 4.79
384 385 2.226912 CGATCTTAGGATCTCACCGTCC 59.773 54.545 12.51 0.00 44.42 4.79
385 386 2.820728 TCTTAGGATCTCACCGTCCA 57.179 50.000 0.00 0.00 36.96 4.02
386 387 2.376109 TCTTAGGATCTCACCGTCCAC 58.624 52.381 0.00 0.00 36.96 4.02
387 388 1.409427 CTTAGGATCTCACCGTCCACC 59.591 57.143 0.00 0.00 36.96 4.61
388 389 0.629596 TAGGATCTCACCGTCCACCT 59.370 55.000 0.00 0.00 36.96 4.00
389 390 0.252284 AGGATCTCACCGTCCACCTT 60.252 55.000 0.00 0.00 36.96 3.50
390 391 0.613777 GGATCTCACCGTCCACCTTT 59.386 55.000 0.00 0.00 34.57 3.11
391 392 1.003233 GGATCTCACCGTCCACCTTTT 59.997 52.381 0.00 0.00 34.57 2.27
392 393 2.076863 GATCTCACCGTCCACCTTTTG 58.923 52.381 0.00 0.00 0.00 2.44
393 394 0.834612 TCTCACCGTCCACCTTTTGT 59.165 50.000 0.00 0.00 0.00 2.83
394 395 2.040939 TCTCACCGTCCACCTTTTGTA 58.959 47.619 0.00 0.00 0.00 2.41
395 396 2.635915 TCTCACCGTCCACCTTTTGTAT 59.364 45.455 0.00 0.00 0.00 2.29
396 397 3.071892 TCTCACCGTCCACCTTTTGTATT 59.928 43.478 0.00 0.00 0.00 1.89
397 398 3.404899 TCACCGTCCACCTTTTGTATTC 58.595 45.455 0.00 0.00 0.00 1.75
398 399 3.071892 TCACCGTCCACCTTTTGTATTCT 59.928 43.478 0.00 0.00 0.00 2.40
399 400 3.435671 CACCGTCCACCTTTTGTATTCTC 59.564 47.826 0.00 0.00 0.00 2.87
400 401 2.671396 CCGTCCACCTTTTGTATTCTCG 59.329 50.000 0.00 0.00 0.00 4.04
401 402 2.093783 CGTCCACCTTTTGTATTCTCGC 59.906 50.000 0.00 0.00 0.00 5.03
402 403 3.335579 GTCCACCTTTTGTATTCTCGCT 58.664 45.455 0.00 0.00 0.00 4.93
403 404 3.125316 GTCCACCTTTTGTATTCTCGCTG 59.875 47.826 0.00 0.00 0.00 5.18
404 405 2.159517 CCACCTTTTGTATTCTCGCTGC 60.160 50.000 0.00 0.00 0.00 5.25
405 406 2.744202 CACCTTTTGTATTCTCGCTGCT 59.256 45.455 0.00 0.00 0.00 4.24
406 407 3.189287 CACCTTTTGTATTCTCGCTGCTT 59.811 43.478 0.00 0.00 0.00 3.91
407 408 3.189287 ACCTTTTGTATTCTCGCTGCTTG 59.811 43.478 0.00 0.00 0.00 4.01
408 409 2.900122 TTTGTATTCTCGCTGCTTGC 57.100 45.000 0.00 0.00 38.57 4.01
409 410 2.099141 TTGTATTCTCGCTGCTTGCT 57.901 45.000 0.00 0.00 40.11 3.91
410 411 2.959507 TGTATTCTCGCTGCTTGCTA 57.040 45.000 0.00 0.00 40.11 3.49
411 412 2.540515 TGTATTCTCGCTGCTTGCTAC 58.459 47.619 0.00 0.00 40.11 3.58
412 413 2.166459 TGTATTCTCGCTGCTTGCTACT 59.834 45.455 0.00 0.00 40.11 2.57
413 414 3.380320 TGTATTCTCGCTGCTTGCTACTA 59.620 43.478 0.00 0.00 40.11 1.82
414 415 3.526931 ATTCTCGCTGCTTGCTACTAA 57.473 42.857 0.00 0.00 40.11 2.24
415 416 3.526931 TTCTCGCTGCTTGCTACTAAT 57.473 42.857 0.00 0.00 40.11 1.73
416 417 2.814269 TCTCGCTGCTTGCTACTAATG 58.186 47.619 0.00 0.00 40.11 1.90
417 418 2.427095 TCTCGCTGCTTGCTACTAATGA 59.573 45.455 0.00 0.00 40.11 2.57
418 419 3.068732 TCTCGCTGCTTGCTACTAATGAT 59.931 43.478 0.00 0.00 40.11 2.45
419 420 4.278419 TCTCGCTGCTTGCTACTAATGATA 59.722 41.667 0.00 0.00 40.11 2.15
420 421 5.047731 TCTCGCTGCTTGCTACTAATGATAT 60.048 40.000 0.00 0.00 40.11 1.63
421 422 5.164233 TCGCTGCTTGCTACTAATGATATC 58.836 41.667 0.00 0.00 40.11 1.63
422 423 4.031089 CGCTGCTTGCTACTAATGATATCG 59.969 45.833 0.00 0.00 40.11 2.92
423 424 5.164233 GCTGCTTGCTACTAATGATATCGA 58.836 41.667 0.00 0.00 38.95 3.59
424 425 5.061560 GCTGCTTGCTACTAATGATATCGAC 59.938 44.000 0.00 0.00 38.95 4.20
425 426 6.084326 TGCTTGCTACTAATGATATCGACA 57.916 37.500 0.00 0.00 0.00 4.35
426 427 6.512297 TGCTTGCTACTAATGATATCGACAA 58.488 36.000 0.00 0.00 0.00 3.18
427 428 6.642540 TGCTTGCTACTAATGATATCGACAAG 59.357 38.462 0.00 0.00 35.17 3.16
428 429 6.090088 GCTTGCTACTAATGATATCGACAAGG 59.910 42.308 0.00 0.00 33.23 3.61
429 430 5.470368 TGCTACTAATGATATCGACAAGGC 58.530 41.667 0.00 0.00 0.00 4.35
430 431 4.865365 GCTACTAATGATATCGACAAGGCC 59.135 45.833 0.00 0.00 0.00 5.19
431 432 4.955811 ACTAATGATATCGACAAGGCCA 57.044 40.909 5.01 0.00 0.00 5.36
432 433 5.290493 ACTAATGATATCGACAAGGCCAA 57.710 39.130 5.01 0.00 0.00 4.52
433 434 5.057149 ACTAATGATATCGACAAGGCCAAC 58.943 41.667 5.01 0.00 0.00 3.77
434 435 3.558931 ATGATATCGACAAGGCCAACA 57.441 42.857 5.01 0.00 0.00 3.33
435 436 3.342377 TGATATCGACAAGGCCAACAA 57.658 42.857 5.01 0.00 0.00 2.83
436 437 3.884895 TGATATCGACAAGGCCAACAAT 58.115 40.909 5.01 0.00 0.00 2.71
437 438 4.269183 TGATATCGACAAGGCCAACAATT 58.731 39.130 5.01 0.00 0.00 2.32
438 439 4.096231 TGATATCGACAAGGCCAACAATTG 59.904 41.667 5.01 3.24 0.00 2.32
439 440 0.313672 TCGACAAGGCCAACAATTGC 59.686 50.000 5.01 0.00 0.00 3.56
440 441 0.314935 CGACAAGGCCAACAATTGCT 59.685 50.000 5.01 0.00 0.00 3.91
441 442 1.787012 GACAAGGCCAACAATTGCTG 58.213 50.000 5.01 3.21 0.00 4.41
442 443 0.393820 ACAAGGCCAACAATTGCTGG 59.606 50.000 21.33 21.33 34.50 4.85
443 444 0.680618 CAAGGCCAACAATTGCTGGA 59.319 50.000 28.16 0.00 33.20 3.86
444 445 1.276989 CAAGGCCAACAATTGCTGGAT 59.723 47.619 28.16 14.56 33.20 3.41
445 446 1.188863 AGGCCAACAATTGCTGGATC 58.811 50.000 28.16 18.95 33.20 3.36
446 447 1.188863 GGCCAACAATTGCTGGATCT 58.811 50.000 28.16 0.00 33.20 2.75
447 448 1.551883 GGCCAACAATTGCTGGATCTT 59.448 47.619 28.16 0.79 33.20 2.40
448 449 2.027837 GGCCAACAATTGCTGGATCTTT 60.028 45.455 28.16 0.05 33.20 2.52
449 450 3.256558 GCCAACAATTGCTGGATCTTTC 58.743 45.455 28.16 8.34 33.20 2.62
450 451 3.306225 GCCAACAATTGCTGGATCTTTCA 60.306 43.478 28.16 0.00 33.20 2.69
451 452 4.800249 GCCAACAATTGCTGGATCTTTCAA 60.800 41.667 28.16 0.00 33.20 2.69
452 453 5.299148 CCAACAATTGCTGGATCTTTCAAA 58.701 37.500 21.13 0.00 33.20 2.69
453 454 5.759273 CCAACAATTGCTGGATCTTTCAAAA 59.241 36.000 21.13 0.00 33.20 2.44
454 455 6.260493 CCAACAATTGCTGGATCTTTCAAAAA 59.740 34.615 21.13 0.00 33.20 1.94
483 484 2.093306 TAAGATGACACAAGGCGGTG 57.907 50.000 10.20 10.20 44.35 4.94
491 492 0.872388 CACAAGGCGGTGAAAGTACC 59.128 55.000 6.51 0.00 41.32 3.34
498 499 2.741930 GGTGAAAGTACCGTACGCC 58.258 57.895 10.49 0.00 0.00 5.68
499 500 1.072666 GGTGAAAGTACCGTACGCCG 61.073 60.000 10.49 0.00 0.00 6.46
500 501 0.387239 GTGAAAGTACCGTACGCCGT 60.387 55.000 10.49 6.05 33.66 5.68
505 506 0.598065 AGTACCGTACGCCGTTCTTT 59.402 50.000 10.49 0.00 33.66 2.52
520 521 4.844267 CGTTCTTTCGGAAAATTCACAGT 58.156 39.130 4.53 0.00 35.51 3.55
521 522 4.904154 CGTTCTTTCGGAAAATTCACAGTC 59.096 41.667 4.53 0.00 35.51 3.51
522 523 5.212934 GTTCTTTCGGAAAATTCACAGTCC 58.787 41.667 4.53 0.00 35.51 3.85
523 524 4.456535 TCTTTCGGAAAATTCACAGTCCA 58.543 39.130 4.53 0.00 0.00 4.02
524 525 4.274950 TCTTTCGGAAAATTCACAGTCCAC 59.725 41.667 4.53 0.00 0.00 4.02
530 531 6.319152 TCGGAAAATTCACAGTCCACTTAAAA 59.681 34.615 0.00 0.00 0.00 1.52
536 537 4.211125 TCACAGTCCACTTAAAATTGCCA 58.789 39.130 0.00 0.00 0.00 4.92
540 541 5.539955 ACAGTCCACTTAAAATTGCCAGAAT 59.460 36.000 0.00 0.00 0.00 2.40
542 543 7.397192 ACAGTCCACTTAAAATTGCCAGAATAT 59.603 33.333 0.00 0.00 0.00 1.28
544 545 6.476706 GTCCACTTAAAATTGCCAGAATATGC 59.523 38.462 0.00 0.00 0.00 3.14
545 546 5.459762 CCACTTAAAATTGCCAGAATATGCG 59.540 40.000 0.00 0.00 0.00 4.73
548 549 7.113965 CACTTAAAATTGCCAGAATATGCGATC 59.886 37.037 0.00 0.00 31.20 3.69
561 562 8.337532 CAGAATATGCGATCTAAAAACATGACA 58.662 33.333 0.00 0.00 0.00 3.58
562 563 8.554528 AGAATATGCGATCTAAAAACATGACAG 58.445 33.333 0.00 0.00 0.00 3.51
563 564 4.944962 TGCGATCTAAAAACATGACAGG 57.055 40.909 0.00 0.00 0.00 4.00
567 568 5.126067 CGATCTAAAAACATGACAGGGGAT 58.874 41.667 0.00 0.00 0.00 3.85
569 570 5.779241 TCTAAAAACATGACAGGGGATCT 57.221 39.130 0.00 0.00 0.00 2.75
583 584 4.535294 CAGGGGATCTGACATATGGAAGAT 59.465 45.833 17.62 17.62 46.18 2.40
584 585 5.013913 CAGGGGATCTGACATATGGAAGATT 59.986 44.000 18.29 5.43 46.18 2.40
586 587 5.013495 GGGGATCTGACATATGGAAGATTGA 59.987 44.000 18.29 4.38 29.59 2.57
587 588 6.296894 GGGGATCTGACATATGGAAGATTGAT 60.297 42.308 18.29 7.99 29.59 2.57
589 590 6.093771 GGATCTGACATATGGAAGATTGATGC 59.906 42.308 18.29 9.10 29.59 3.91
598 599 8.978539 CATATGGAAGATTGATGCTTCAAAATG 58.021 33.333 17.82 8.60 44.70 2.32
600 601 4.569564 GGAAGATTGATGCTTCAAAATGGC 59.430 41.667 17.82 7.73 44.70 4.40
601 602 4.133013 AGATTGATGCTTCAAAATGGCC 57.867 40.909 17.82 0.00 44.70 5.36
607 608 1.010419 GCTTCAAAATGGCCGCACAG 61.010 55.000 0.00 0.00 0.00 3.66
617 618 0.963355 GGCCGCACAGGGAAATGTAA 60.963 55.000 0.00 0.00 41.48 2.41
619 620 1.094785 CCGCACAGGGAAATGTAAGG 58.905 55.000 0.00 0.00 35.97 2.69
622 623 1.948611 GCACAGGGAAATGTAAGGCGA 60.949 52.381 0.00 0.00 0.00 5.54
623 624 2.009774 CACAGGGAAATGTAAGGCGAG 58.990 52.381 0.00 0.00 0.00 5.03
634 635 3.390135 TGTAAGGCGAGCACATAATAGC 58.610 45.455 0.00 0.00 0.00 2.97
642 643 5.389935 GGCGAGCACATAATAGCAAGTAATC 60.390 44.000 0.00 0.00 0.00 1.75
648 649 9.046296 AGCACATAATAGCAAGTAATCAAGTAC 57.954 33.333 0.00 0.00 0.00 2.73
650 651 9.325198 CACATAATAGCAAGTAATCAAGTACCA 57.675 33.333 0.00 0.00 0.00 3.25
655 656 5.186198 AGCAAGTAATCAAGTACCACCATC 58.814 41.667 0.00 0.00 0.00 3.51
660 661 7.923414 AGTAATCAAGTACCACCATCTTTTC 57.077 36.000 0.00 0.00 0.00 2.29
676 677 4.922719 TCTTTTCGTGGTAATTTTGCGTT 58.077 34.783 0.00 0.00 0.00 4.84
681 682 4.056740 TCGTGGTAATTTTGCGTTACTCA 58.943 39.130 0.00 0.00 33.60 3.41
683 684 4.668177 CGTGGTAATTTTGCGTTACTCAGG 60.668 45.833 0.00 0.00 33.60 3.86
684 685 4.453136 GTGGTAATTTTGCGTTACTCAGGA 59.547 41.667 0.00 0.00 33.60 3.86
685 686 4.453136 TGGTAATTTTGCGTTACTCAGGAC 59.547 41.667 0.00 0.00 33.60 3.85
690 691 5.508200 TTTTGCGTTACTCAGGACAAAAT 57.492 34.783 0.00 0.00 33.46 1.82
691 692 4.481930 TTGCGTTACTCAGGACAAAATG 57.518 40.909 0.00 0.00 0.00 2.32
697 698 6.307155 CGTTACTCAGGACAAAATGATTGAC 58.693 40.000 0.00 0.00 0.00 3.18
698 699 6.073276 CGTTACTCAGGACAAAATGATTGACA 60.073 38.462 0.00 0.00 0.00 3.58
699 700 7.361201 CGTTACTCAGGACAAAATGATTGACAT 60.361 37.037 0.00 0.00 41.45 3.06
701 702 9.513906 TTACTCAGGACAAAATGATTGACATTA 57.486 29.630 0.00 0.00 46.90 1.90
702 703 7.820648 ACTCAGGACAAAATGATTGACATTAC 58.179 34.615 0.00 0.00 46.90 1.89
711 715 5.598416 ATGATTGACATTACTCCACTCGA 57.402 39.130 0.00 0.00 35.45 4.04
716 720 5.598416 TGACATTACTCCACTCGATGAAT 57.402 39.130 0.00 0.00 0.00 2.57
717 721 5.977635 TGACATTACTCCACTCGATGAATT 58.022 37.500 0.00 0.00 0.00 2.17
718 722 6.406370 TGACATTACTCCACTCGATGAATTT 58.594 36.000 0.00 0.00 0.00 1.82
720 724 6.173339 ACATTACTCCACTCGATGAATTTGT 58.827 36.000 0.00 0.00 0.00 2.83
721 725 6.313905 ACATTACTCCACTCGATGAATTTGTC 59.686 38.462 0.00 0.00 0.00 3.18
723 727 2.604914 CTCCACTCGATGAATTTGTCCG 59.395 50.000 0.00 0.00 0.00 4.79
724 728 1.665679 CCACTCGATGAATTTGTCCGG 59.334 52.381 0.00 0.00 0.00 5.14
725 729 2.616960 CACTCGATGAATTTGTCCGGA 58.383 47.619 0.00 0.00 0.00 5.14
726 730 3.198068 CACTCGATGAATTTGTCCGGAT 58.802 45.455 7.81 0.00 0.00 4.18
727 731 4.368315 CACTCGATGAATTTGTCCGGATA 58.632 43.478 7.81 0.10 0.00 2.59
728 732 4.209288 CACTCGATGAATTTGTCCGGATAC 59.791 45.833 7.81 0.00 0.00 2.24
741 745 3.780624 GGATACGGGTGCTCATGTT 57.219 52.632 0.00 0.00 0.00 2.71
742 746 2.902705 GGATACGGGTGCTCATGTTA 57.097 50.000 0.00 0.00 0.00 2.41
743 747 2.755650 GGATACGGGTGCTCATGTTAG 58.244 52.381 0.00 0.00 0.00 2.34
744 748 2.102588 GGATACGGGTGCTCATGTTAGT 59.897 50.000 0.00 0.00 0.00 2.24
745 749 3.431766 GGATACGGGTGCTCATGTTAGTT 60.432 47.826 0.00 0.00 0.00 2.24
746 750 2.561478 ACGGGTGCTCATGTTAGTTT 57.439 45.000 0.00 0.00 0.00 2.66
747 751 2.858745 ACGGGTGCTCATGTTAGTTTT 58.141 42.857 0.00 0.00 0.00 2.43
748 752 3.219281 ACGGGTGCTCATGTTAGTTTTT 58.781 40.909 0.00 0.00 0.00 1.94
775 779 5.705609 TCTTAAGTTGGCTCATGTTTTCC 57.294 39.130 1.63 0.00 0.00 3.13
777 781 5.596361 TCTTAAGTTGGCTCATGTTTTCCAA 59.404 36.000 1.63 0.00 36.35 3.53
778 782 4.751767 AAGTTGGCTCATGTTTTCCAAA 57.248 36.364 10.54 0.00 39.93 3.28
779 783 4.751767 AGTTGGCTCATGTTTTCCAAAA 57.248 36.364 10.54 0.00 39.93 2.44
780 784 4.696455 AGTTGGCTCATGTTTTCCAAAAG 58.304 39.130 10.54 0.00 39.93 2.27
782 786 2.368221 TGGCTCATGTTTTCCAAAAGGG 59.632 45.455 0.00 0.00 38.37 3.95
784 788 3.554960 GGCTCATGTTTTCCAAAAGGGTC 60.555 47.826 0.00 0.00 38.11 4.46
793 820 0.961753 CCAAAAGGGTCTGCCTTGAC 59.038 55.000 0.00 0.00 36.31 3.18
824 852 5.940192 TTGAGATTACAGTGCGTTGAATT 57.060 34.783 0.00 0.00 0.00 2.17
892 920 1.794003 CAGACTCACGACGCACGAG 60.794 63.158 9.43 7.71 45.77 4.18
893 921 2.251667 GACTCACGACGCACGAGT 59.748 61.111 13.19 13.19 45.77 4.18
894 922 1.792834 GACTCACGACGCACGAGTC 60.793 63.158 20.18 20.18 45.77 3.36
895 923 2.502080 CTCACGACGCACGAGTCC 60.502 66.667 9.43 0.00 45.77 3.85
896 924 3.249973 CTCACGACGCACGAGTCCA 62.250 63.158 9.43 0.00 45.77 4.02
897 925 2.801162 CACGACGCACGAGTCCAG 60.801 66.667 9.43 0.00 45.77 3.86
898 926 4.702081 ACGACGCACGAGTCCAGC 62.702 66.667 9.43 0.00 45.77 4.85
1197 5578 2.037136 CAAGGTCTCCGCCAAGCTG 61.037 63.158 0.00 0.00 0.00 4.24
1245 5627 4.516195 GCCGTCCTCGCCTTCCTC 62.516 72.222 0.00 0.00 35.54 3.71
1246 5628 4.194720 CCGTCCTCGCCTTCCTCG 62.195 72.222 0.00 0.00 35.54 4.63
2036 6430 2.060326 TACTATTATGCAGTCGCGGC 57.940 50.000 0.21 0.21 42.97 6.53
2135 6529 1.377994 CTTGCAGAGGGGAAGTGCT 59.622 57.895 0.00 0.00 39.84 4.40
2169 6565 5.353956 CAGATTTACATGAAACATGACCGGA 59.646 40.000 9.46 0.00 0.00 5.14
2187 6583 6.015010 TGACCGGAATGAAAATTGGTATGTTT 60.015 34.615 9.46 0.00 0.00 2.83
2246 6642 4.937620 TGCTATCAACTTGTCCTTCATCAC 59.062 41.667 0.00 0.00 0.00 3.06
2285 6710 2.178764 AGTGAGAGATCAGGGCATCCTA 59.821 50.000 0.00 0.00 42.67 2.94
2394 6822 7.872113 ATCTTCAACCTATCTTTCCATGAAC 57.128 36.000 0.00 0.00 0.00 3.18
2429 6857 3.208594 TCGGCCATGAAGATGATTTGAG 58.791 45.455 2.24 0.00 0.00 3.02
2434 6870 5.824624 GGCCATGAAGATGATTTGAGACTTA 59.175 40.000 0.00 0.00 0.00 2.24
2488 6924 2.093394 CCGGGAAACAGTTTTGGGTTTT 60.093 45.455 0.00 0.00 37.35 2.43
2554 6990 8.157476 CACTATGTAGATATTTTAGGTGCCCTT 58.843 37.037 0.00 0.00 34.61 3.95
2591 7027 2.806288 GCAAATCGATGCTTGTACGT 57.194 45.000 10.65 0.00 43.06 3.57
2767 7206 6.039717 GCATCTTTGTCCCTCAGCATATTTTA 59.960 38.462 0.00 0.00 0.00 1.52
2777 7216 9.739276 TCCCTCAGCATATTTTATTAACATAGG 57.261 33.333 0.00 0.00 0.00 2.57
2800 7239 5.104735 GGAAAGTGGTCTTCTGTATCATCCT 60.105 44.000 0.00 0.00 32.90 3.24
2804 7243 5.128499 AGTGGTCTTCTGTATCATCCTTCTG 59.872 44.000 0.00 0.00 0.00 3.02
2805 7244 5.127845 GTGGTCTTCTGTATCATCCTTCTGA 59.872 44.000 0.00 0.00 0.00 3.27
2829 7271 7.173907 TGAAAATTTCTAGCTGGAAAGTCAGAG 59.826 37.037 26.39 0.00 38.38 3.35
2837 7279 4.042684 AGCTGGAAAGTCAGAGAAGGAAAT 59.957 41.667 0.00 0.00 36.93 2.17
2838 7280 5.249393 AGCTGGAAAGTCAGAGAAGGAAATA 59.751 40.000 0.00 0.00 36.93 1.40
2845 7287 7.680442 AAGTCAGAGAAGGAAATAGAAAAGC 57.320 36.000 0.00 0.00 0.00 3.51
2846 7288 6.176896 AGTCAGAGAAGGAAATAGAAAAGCC 58.823 40.000 0.00 0.00 0.00 4.35
2848 7290 6.601217 GTCAGAGAAGGAAATAGAAAAGCCAT 59.399 38.462 0.00 0.00 0.00 4.40
2849 7291 6.600822 TCAGAGAAGGAAATAGAAAAGCCATG 59.399 38.462 0.00 0.00 0.00 3.66
2861 7335 8.930846 ATAGAAAAGCCATGTAGCATAGAATT 57.069 30.769 0.00 0.00 34.23 2.17
2896 7370 7.004555 TCAAATGTAGGAACAGTAGACATGT 57.995 36.000 0.00 0.00 39.49 3.21
2908 7382 7.101652 ACAGTAGACATGTTATGTACCTCAG 57.898 40.000 0.00 0.00 45.03 3.35
2926 7400 5.003804 CCTCAGTTTATAACCAAGCTGTGT 58.996 41.667 0.00 0.00 37.81 3.72
2938 7412 0.174389 AGCTGTGTGAGGATAGTGCG 59.826 55.000 0.00 0.00 0.00 5.34
2945 7419 4.081917 TGTGTGAGGATAGTGCGACATTTA 60.082 41.667 0.00 0.00 0.00 1.40
2957 7431 4.851558 GTGCGACATTTATTTGTTCCTGAC 59.148 41.667 0.00 0.00 0.00 3.51
2973 7447 6.874134 TGTTCCTGACTTGAAGTTATAGAAGC 59.126 38.462 0.00 0.00 0.00 3.86
2978 7452 7.187824 TGACTTGAAGTTATAGAAGCTGGAT 57.812 36.000 0.00 0.00 0.00 3.41
2984 7458 8.668510 TGAAGTTATAGAAGCTGGATGAAATC 57.331 34.615 0.00 0.00 44.55 2.17
3000 7474 7.655236 GATGAAATCATATCTCAGGTGTGAG 57.345 40.000 0.00 0.00 46.62 3.51
3001 7475 5.996513 ATGAAATCATATCTCAGGTGTGAGC 59.003 40.000 0.00 0.00 41.46 4.26
3021 7495 1.076549 TGCAGTAAGGCAAAGGGGG 59.923 57.895 0.00 0.00 41.65 5.40
3032 7506 3.238197 AAAGGGGGTGGTCCATGCC 62.238 63.158 0.00 0.00 37.22 4.40
3069 7543 9.458727 AGATATGTGATTTGAAGATCAGTTGTT 57.541 29.630 0.00 0.00 36.76 2.83
3073 7547 6.152379 GTGATTTGAAGATCAGTTGTTTCCC 58.848 40.000 0.00 0.00 36.76 3.97
3090 7564 1.214175 TCCCTTTTCTGGTGCTTGTGA 59.786 47.619 0.00 0.00 0.00 3.58
3123 7597 6.815142 AGAAACAAGATTATTTCAATGCAGGC 59.185 34.615 0.00 0.00 37.30 4.85
3125 7599 4.398988 ACAAGATTATTTCAATGCAGGCGA 59.601 37.500 0.00 0.00 0.00 5.54
3133 7607 0.597568 CAATGCAGGCGAAGGAAACA 59.402 50.000 0.00 0.00 0.00 2.83
3134 7608 1.203052 CAATGCAGGCGAAGGAAACAT 59.797 47.619 0.00 0.00 0.00 2.71
3138 7612 2.288666 GCAGGCGAAGGAAACATATCA 58.711 47.619 0.00 0.00 0.00 2.15
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 9.810545 GGCTTTTAAATAATTTAGGTGCATGTA 57.189 29.630 0.00 0.00 0.00 2.29
31 32 8.539544 AGGCTTTTAAATAATTTAGGTGCATGT 58.460 29.630 0.00 0.00 0.00 3.21
32 33 8.947055 AGGCTTTTAAATAATTTAGGTGCATG 57.053 30.769 0.00 0.00 0.00 4.06
65 66 9.982651 GACTTGAGGTCTTATATGCTTATAACA 57.017 33.333 7.74 2.92 41.46 2.41
66 67 9.982651 TGACTTGAGGTCTTATATGCTTATAAC 57.017 33.333 7.74 1.72 44.74 1.89
69 70 8.709308 ACTTGACTTGAGGTCTTATATGCTTAT 58.291 33.333 0.00 0.00 44.74 1.73
70 71 8.079211 ACTTGACTTGAGGTCTTATATGCTTA 57.921 34.615 0.00 0.00 44.74 3.09
71 72 6.951971 ACTTGACTTGAGGTCTTATATGCTT 58.048 36.000 0.00 0.00 44.74 3.91
72 73 6.155221 TGACTTGACTTGAGGTCTTATATGCT 59.845 38.462 0.00 0.00 44.74 3.79
73 74 6.341316 TGACTTGACTTGAGGTCTTATATGC 58.659 40.000 0.00 0.00 44.74 3.14
74 75 8.824781 CATTGACTTGACTTGAGGTCTTATATG 58.175 37.037 0.00 0.00 44.74 1.78
75 76 8.762645 TCATTGACTTGACTTGAGGTCTTATAT 58.237 33.333 0.00 0.00 44.74 0.86
76 77 8.035394 GTCATTGACTTGACTTGAGGTCTTATA 58.965 37.037 9.59 0.00 44.74 0.98
77 78 6.876257 GTCATTGACTTGACTTGAGGTCTTAT 59.124 38.462 9.59 0.00 44.74 1.73
78 79 6.183360 TGTCATTGACTTGACTTGAGGTCTTA 60.183 38.462 17.26 0.00 45.07 2.10
79 80 5.059833 GTCATTGACTTGACTTGAGGTCTT 58.940 41.667 9.59 0.00 44.74 3.01
80 81 4.101585 TGTCATTGACTTGACTTGAGGTCT 59.898 41.667 17.26 0.00 45.07 3.85
81 82 4.212214 GTGTCATTGACTTGACTTGAGGTC 59.788 45.833 17.26 0.00 45.07 3.85
82 83 4.130118 GTGTCATTGACTTGACTTGAGGT 58.870 43.478 17.26 0.00 45.07 3.85
83 84 4.129380 TGTGTCATTGACTTGACTTGAGG 58.871 43.478 17.26 0.00 45.07 3.86
84 85 5.739752 TTGTGTCATTGACTTGACTTGAG 57.260 39.130 17.26 0.00 45.07 3.02
85 86 5.506151 GCATTGTGTCATTGACTTGACTTGA 60.506 40.000 17.26 0.57 45.07 3.02
86 87 4.678287 GCATTGTGTCATTGACTTGACTTG 59.322 41.667 17.26 10.19 45.07 3.16
87 88 4.261741 GGCATTGTGTCATTGACTTGACTT 60.262 41.667 17.26 0.00 45.07 3.01
88 89 3.254166 GGCATTGTGTCATTGACTTGACT 59.746 43.478 17.26 0.00 45.07 3.41
89 90 3.004629 TGGCATTGTGTCATTGACTTGAC 59.995 43.478 17.26 11.86 45.05 3.18
90 91 3.220940 TGGCATTGTGTCATTGACTTGA 58.779 40.909 17.26 4.09 33.15 3.02
91 92 3.646611 TGGCATTGTGTCATTGACTTG 57.353 42.857 17.26 10.58 33.15 3.16
92 93 3.550639 CGTTGGCATTGTGTCATTGACTT 60.551 43.478 17.26 0.00 29.04 3.01
93 94 2.030893 CGTTGGCATTGTGTCATTGACT 60.031 45.455 17.26 0.00 29.04 3.41
94 95 2.318578 CGTTGGCATTGTGTCATTGAC 58.681 47.619 9.93 9.93 29.04 3.18
95 96 1.335780 GCGTTGGCATTGTGTCATTGA 60.336 47.619 0.00 0.00 39.62 2.57
96 97 1.062258 GCGTTGGCATTGTGTCATTG 58.938 50.000 0.00 0.00 39.62 2.82
97 98 0.672889 TGCGTTGGCATTGTGTCATT 59.327 45.000 0.00 0.00 46.21 2.57
98 99 2.339403 TGCGTTGGCATTGTGTCAT 58.661 47.368 0.00 0.00 46.21 3.06
99 100 3.833304 TGCGTTGGCATTGTGTCA 58.167 50.000 0.00 0.00 46.21 3.58
108 109 7.008901 GTCTTTATACCTTTAATTTGCGTTGGC 59.991 37.037 0.00 0.00 40.52 4.52
109 110 7.486870 GGTCTTTATACCTTTAATTTGCGTTGG 59.513 37.037 0.00 0.00 36.53 3.77
110 111 8.389586 GGTCTTTATACCTTTAATTTGCGTTG 57.610 34.615 0.00 0.00 36.53 4.10
124 125 4.811557 CAGTAGCAGCAAGGTCTTTATACC 59.188 45.833 0.00 0.00 40.06 2.73
125 126 5.520649 GTCAGTAGCAGCAAGGTCTTTATAC 59.479 44.000 0.00 0.00 0.00 1.47
126 127 5.661458 GTCAGTAGCAGCAAGGTCTTTATA 58.339 41.667 0.00 0.00 0.00 0.98
127 128 4.508662 GTCAGTAGCAGCAAGGTCTTTAT 58.491 43.478 0.00 0.00 0.00 1.40
128 129 3.614150 CGTCAGTAGCAGCAAGGTCTTTA 60.614 47.826 0.00 0.00 0.00 1.85
129 130 2.772287 GTCAGTAGCAGCAAGGTCTTT 58.228 47.619 0.00 0.00 0.00 2.52
130 131 1.337260 CGTCAGTAGCAGCAAGGTCTT 60.337 52.381 0.00 0.00 0.00 3.01
131 132 0.244994 CGTCAGTAGCAGCAAGGTCT 59.755 55.000 0.00 0.00 0.00 3.85
132 133 1.355066 GCGTCAGTAGCAGCAAGGTC 61.355 60.000 0.00 0.00 34.19 3.85
133 134 1.374758 GCGTCAGTAGCAGCAAGGT 60.375 57.895 0.00 0.00 34.19 3.50
134 135 2.447887 CGCGTCAGTAGCAGCAAGG 61.448 63.158 0.00 0.00 34.19 3.61
135 136 1.284982 AACGCGTCAGTAGCAGCAAG 61.285 55.000 14.44 0.00 34.19 4.01
136 137 1.300620 AACGCGTCAGTAGCAGCAA 60.301 52.632 14.44 0.00 34.19 3.91
137 138 2.021584 CAACGCGTCAGTAGCAGCA 61.022 57.895 14.44 0.00 34.19 4.41
138 139 2.730672 CCAACGCGTCAGTAGCAGC 61.731 63.158 14.44 0.00 34.19 5.25
139 140 2.094659 CCCAACGCGTCAGTAGCAG 61.095 63.158 14.44 0.00 34.19 4.24
140 141 2.048597 CCCAACGCGTCAGTAGCA 60.049 61.111 14.44 0.00 34.19 3.49
141 142 0.947180 TTTCCCAACGCGTCAGTAGC 60.947 55.000 14.44 0.00 0.00 3.58
142 143 1.722011 ATTTCCCAACGCGTCAGTAG 58.278 50.000 14.44 0.00 0.00 2.57
143 144 2.172851 AATTTCCCAACGCGTCAGTA 57.827 45.000 14.44 0.00 0.00 2.74
144 145 1.001815 CAAATTTCCCAACGCGTCAGT 60.002 47.619 14.44 0.00 0.00 3.41
145 146 1.685302 CAAATTTCCCAACGCGTCAG 58.315 50.000 14.44 8.66 0.00 3.51
146 147 0.318275 GCAAATTTCCCAACGCGTCA 60.318 50.000 14.44 0.00 0.00 4.35
147 148 0.318275 TGCAAATTTCCCAACGCGTC 60.318 50.000 14.44 0.00 0.00 5.19
148 149 0.103208 TTGCAAATTTCCCAACGCGT 59.897 45.000 5.58 5.58 0.00 6.01
149 150 0.783579 CTTGCAAATTTCCCAACGCG 59.216 50.000 3.53 3.53 0.00 6.01
150 151 2.147436 TCTTGCAAATTTCCCAACGC 57.853 45.000 0.00 0.00 0.00 4.84
151 152 3.494251 CCTTTCTTGCAAATTTCCCAACG 59.506 43.478 0.00 0.00 0.00 4.10
152 153 4.702831 TCCTTTCTTGCAAATTTCCCAAC 58.297 39.130 0.00 0.00 0.00 3.77
153 154 5.104569 AGTTCCTTTCTTGCAAATTTCCCAA 60.105 36.000 0.00 0.00 0.00 4.12
154 155 4.408596 AGTTCCTTTCTTGCAAATTTCCCA 59.591 37.500 0.00 0.00 0.00 4.37
155 156 4.751600 CAGTTCCTTTCTTGCAAATTTCCC 59.248 41.667 0.00 0.00 0.00 3.97
156 157 5.359756 ACAGTTCCTTTCTTGCAAATTTCC 58.640 37.500 0.00 0.00 0.00 3.13
157 158 6.313658 ACAACAGTTCCTTTCTTGCAAATTTC 59.686 34.615 0.00 0.00 0.00 2.17
158 159 6.172630 ACAACAGTTCCTTTCTTGCAAATTT 58.827 32.000 0.00 0.00 0.00 1.82
159 160 5.733676 ACAACAGTTCCTTTCTTGCAAATT 58.266 33.333 0.00 0.00 0.00 1.82
160 161 5.343307 ACAACAGTTCCTTTCTTGCAAAT 57.657 34.783 0.00 0.00 0.00 2.32
161 162 4.799564 ACAACAGTTCCTTTCTTGCAAA 57.200 36.364 0.00 0.00 0.00 3.68
162 163 4.947388 AGTACAACAGTTCCTTTCTTGCAA 59.053 37.500 0.00 0.00 0.00 4.08
163 164 4.523083 AGTACAACAGTTCCTTTCTTGCA 58.477 39.130 0.00 0.00 0.00 4.08
164 165 5.500645 AAGTACAACAGTTCCTTTCTTGC 57.499 39.130 0.00 0.00 0.00 4.01
165 166 8.889717 TCTAAAAGTACAACAGTTCCTTTCTTG 58.110 33.333 0.00 0.00 0.00 3.02
166 167 9.110502 CTCTAAAAGTACAACAGTTCCTTTCTT 57.889 33.333 0.00 0.00 0.00 2.52
167 168 7.715686 CCTCTAAAAGTACAACAGTTCCTTTCT 59.284 37.037 0.00 0.00 0.00 2.52
168 169 7.498239 ACCTCTAAAAGTACAACAGTTCCTTTC 59.502 37.037 0.00 0.00 0.00 2.62
169 170 7.344134 ACCTCTAAAAGTACAACAGTTCCTTT 58.656 34.615 0.00 0.00 0.00 3.11
170 171 6.896883 ACCTCTAAAAGTACAACAGTTCCTT 58.103 36.000 0.00 0.00 0.00 3.36
171 172 6.496144 ACCTCTAAAAGTACAACAGTTCCT 57.504 37.500 0.00 0.00 0.00 3.36
172 173 7.095313 GCTTACCTCTAAAAGTACAACAGTTCC 60.095 40.741 0.00 0.00 0.00 3.62
173 174 7.359014 CGCTTACCTCTAAAAGTACAACAGTTC 60.359 40.741 0.00 0.00 0.00 3.01
174 175 6.423001 CGCTTACCTCTAAAAGTACAACAGTT 59.577 38.462 0.00 0.00 0.00 3.16
175 176 5.924825 CGCTTACCTCTAAAAGTACAACAGT 59.075 40.000 0.00 0.00 0.00 3.55
176 177 5.347907 CCGCTTACCTCTAAAAGTACAACAG 59.652 44.000 0.00 0.00 0.00 3.16
177 178 5.221501 ACCGCTTACCTCTAAAAGTACAACA 60.222 40.000 0.00 0.00 0.00 3.33
178 179 5.233225 ACCGCTTACCTCTAAAAGTACAAC 58.767 41.667 0.00 0.00 0.00 3.32
179 180 5.010922 TGACCGCTTACCTCTAAAAGTACAA 59.989 40.000 0.00 0.00 0.00 2.41
180 181 4.523943 TGACCGCTTACCTCTAAAAGTACA 59.476 41.667 0.00 0.00 0.00 2.90
181 182 5.064441 TGACCGCTTACCTCTAAAAGTAC 57.936 43.478 0.00 0.00 0.00 2.73
182 183 5.163478 GGATGACCGCTTACCTCTAAAAGTA 60.163 44.000 0.00 0.00 0.00 2.24
183 184 4.382793 GGATGACCGCTTACCTCTAAAAGT 60.383 45.833 0.00 0.00 0.00 2.66
184 185 4.120589 GGATGACCGCTTACCTCTAAAAG 58.879 47.826 0.00 0.00 0.00 2.27
185 186 3.516300 TGGATGACCGCTTACCTCTAAAA 59.484 43.478 0.00 0.00 39.42 1.52
186 187 3.101437 TGGATGACCGCTTACCTCTAAA 58.899 45.455 0.00 0.00 39.42 1.85
187 188 2.429610 GTGGATGACCGCTTACCTCTAA 59.570 50.000 0.00 0.00 42.77 2.10
188 189 2.029623 GTGGATGACCGCTTACCTCTA 58.970 52.381 0.00 0.00 42.77 2.43
189 190 0.824759 GTGGATGACCGCTTACCTCT 59.175 55.000 0.00 0.00 42.77 3.69
190 191 3.364277 GTGGATGACCGCTTACCTC 57.636 57.895 0.00 0.00 42.77 3.85
197 198 1.040646 TAGGATGAGTGGATGACCGC 58.959 55.000 0.00 0.00 46.05 5.68
198 199 2.232452 GGATAGGATGAGTGGATGACCG 59.768 54.545 0.00 0.00 39.42 4.79
199 200 3.242867 TGGATAGGATGAGTGGATGACC 58.757 50.000 0.00 0.00 0.00 4.02
200 201 4.155709 TCTGGATAGGATGAGTGGATGAC 58.844 47.826 0.00 0.00 0.00 3.06
201 202 4.475919 TCTGGATAGGATGAGTGGATGA 57.524 45.455 0.00 0.00 0.00 2.92
202 203 6.041865 GGATATCTGGATAGGATGAGTGGATG 59.958 46.154 2.05 0.00 0.00 3.51
203 204 6.067721 AGGATATCTGGATAGGATGAGTGGAT 60.068 42.308 2.05 0.00 0.00 3.41
204 205 5.257339 AGGATATCTGGATAGGATGAGTGGA 59.743 44.000 2.05 0.00 0.00 4.02
205 206 5.527385 AGGATATCTGGATAGGATGAGTGG 58.473 45.833 2.05 0.00 0.00 4.00
206 207 8.474025 GTTTAGGATATCTGGATAGGATGAGTG 58.526 40.741 2.05 0.00 0.00 3.51
207 208 7.340743 CGTTTAGGATATCTGGATAGGATGAGT 59.659 40.741 2.05 0.00 0.00 3.41
208 209 7.683222 GCGTTTAGGATATCTGGATAGGATGAG 60.683 44.444 2.05 0.00 0.00 2.90
209 210 6.096987 GCGTTTAGGATATCTGGATAGGATGA 59.903 42.308 2.05 0.00 0.00 2.92
210 211 6.276847 GCGTTTAGGATATCTGGATAGGATG 58.723 44.000 2.05 0.00 0.00 3.51
211 212 5.364157 GGCGTTTAGGATATCTGGATAGGAT 59.636 44.000 2.05 0.00 0.00 3.24
212 213 4.710375 GGCGTTTAGGATATCTGGATAGGA 59.290 45.833 2.05 0.00 0.00 2.94
213 214 4.466370 TGGCGTTTAGGATATCTGGATAGG 59.534 45.833 2.05 0.00 0.00 2.57
214 215 5.661056 TGGCGTTTAGGATATCTGGATAG 57.339 43.478 2.05 0.00 0.00 2.08
215 216 5.958380 AGATGGCGTTTAGGATATCTGGATA 59.042 40.000 2.05 0.00 0.00 2.59
216 217 4.780021 AGATGGCGTTTAGGATATCTGGAT 59.220 41.667 2.05 0.00 0.00 3.41
217 218 4.160329 AGATGGCGTTTAGGATATCTGGA 58.840 43.478 2.05 0.00 0.00 3.86
218 219 4.021104 TGAGATGGCGTTTAGGATATCTGG 60.021 45.833 2.05 0.00 0.00 3.86
219 220 5.047731 TCTGAGATGGCGTTTAGGATATCTG 60.048 44.000 2.05 0.00 0.00 2.90
220 221 5.080337 TCTGAGATGGCGTTTAGGATATCT 58.920 41.667 2.05 0.00 0.00 1.98
221 222 5.184096 TCTCTGAGATGGCGTTTAGGATATC 59.816 44.000 2.58 0.00 0.00 1.63
222 223 5.080337 TCTCTGAGATGGCGTTTAGGATAT 58.920 41.667 2.58 0.00 0.00 1.63
223 224 4.470602 TCTCTGAGATGGCGTTTAGGATA 58.529 43.478 2.58 0.00 0.00 2.59
224 225 3.300388 TCTCTGAGATGGCGTTTAGGAT 58.700 45.455 2.58 0.00 0.00 3.24
225 226 2.690497 CTCTCTGAGATGGCGTTTAGGA 59.310 50.000 8.00 0.00 0.00 2.94
226 227 2.690497 TCTCTCTGAGATGGCGTTTAGG 59.310 50.000 8.00 0.00 33.35 2.69
227 228 3.490078 GGTCTCTCTGAGATGGCGTTTAG 60.490 52.174 8.00 0.00 40.98 1.85
228 229 2.427453 GGTCTCTCTGAGATGGCGTTTA 59.573 50.000 8.00 0.00 40.98 2.01
229 230 1.205893 GGTCTCTCTGAGATGGCGTTT 59.794 52.381 8.00 0.00 40.98 3.60
230 231 0.820871 GGTCTCTCTGAGATGGCGTT 59.179 55.000 8.00 0.00 40.98 4.84
231 232 1.040339 GGGTCTCTCTGAGATGGCGT 61.040 60.000 8.00 0.00 40.98 5.68
232 233 0.754957 AGGGTCTCTCTGAGATGGCG 60.755 60.000 8.00 0.00 40.98 5.69
233 234 1.412343 GAAGGGTCTCTCTGAGATGGC 59.588 57.143 8.00 4.21 40.98 4.40
234 235 3.030873 AGAAGGGTCTCTCTGAGATGG 57.969 52.381 8.00 0.00 40.98 3.51
235 236 4.141274 TCCTAGAAGGGTCTCTCTGAGATG 60.141 50.000 8.00 3.08 36.13 2.90
236 237 4.051478 TCCTAGAAGGGTCTCTCTGAGAT 58.949 47.826 8.00 0.00 36.13 2.75
237 238 3.465832 TCCTAGAAGGGTCTCTCTGAGA 58.534 50.000 7.24 7.24 35.59 3.27
238 239 3.943671 TCCTAGAAGGGTCTCTCTGAG 57.056 52.381 0.00 0.00 35.59 3.35
239 240 3.139397 GGATCCTAGAAGGGTCTCTCTGA 59.861 52.174 3.84 0.00 45.03 3.27
240 241 3.496331 GGATCCTAGAAGGGTCTCTCTG 58.504 54.545 3.84 0.00 45.03 3.35
241 242 2.107552 CGGATCCTAGAAGGGTCTCTCT 59.892 54.545 10.75 0.00 45.03 3.10
242 243 2.510613 CGGATCCTAGAAGGGTCTCTC 58.489 57.143 10.75 0.00 45.03 3.20
243 244 1.479757 GCGGATCCTAGAAGGGTCTCT 60.480 57.143 10.75 0.00 45.03 3.10
244 245 0.963225 GCGGATCCTAGAAGGGTCTC 59.037 60.000 10.75 0.00 45.03 3.36
245 246 0.470268 GGCGGATCCTAGAAGGGTCT 60.470 60.000 10.75 0.00 45.03 3.85
246 247 1.807495 CGGCGGATCCTAGAAGGGTC 61.807 65.000 10.75 0.00 44.95 4.46
247 248 1.833049 CGGCGGATCCTAGAAGGGT 60.833 63.158 10.75 0.00 35.59 4.34
248 249 1.833049 ACGGCGGATCCTAGAAGGG 60.833 63.158 13.24 0.00 35.59 3.95
249 250 1.107538 TCACGGCGGATCCTAGAAGG 61.108 60.000 13.24 0.00 36.46 3.46
250 251 0.744874 TTCACGGCGGATCCTAGAAG 59.255 55.000 13.24 0.00 0.00 2.85
251 252 0.744874 CTTCACGGCGGATCCTAGAA 59.255 55.000 13.24 5.73 0.00 2.10
252 253 0.106868 TCTTCACGGCGGATCCTAGA 60.107 55.000 13.24 2.84 0.00 2.43
253 254 0.312416 CTCTTCACGGCGGATCCTAG 59.688 60.000 13.24 3.28 0.00 3.02
254 255 0.395311 ACTCTTCACGGCGGATCCTA 60.395 55.000 13.24 0.00 0.00 2.94
255 256 1.258445 AACTCTTCACGGCGGATCCT 61.258 55.000 13.24 0.00 0.00 3.24
256 257 0.458669 TAACTCTTCACGGCGGATCC 59.541 55.000 13.24 0.00 0.00 3.36
257 258 1.841450 CTAACTCTTCACGGCGGATC 58.159 55.000 13.24 0.00 0.00 3.36
258 259 0.179108 GCTAACTCTTCACGGCGGAT 60.179 55.000 13.24 0.00 0.00 4.18
259 260 1.214589 GCTAACTCTTCACGGCGGA 59.785 57.895 13.24 2.41 0.00 5.54
260 261 0.454600 TAGCTAACTCTTCACGGCGG 59.545 55.000 13.24 0.00 0.00 6.13
261 262 2.493713 ATAGCTAACTCTTCACGGCG 57.506 50.000 4.80 4.80 0.00 6.46
262 263 4.571372 ACTATAGCTAACTCTTCACGGC 57.429 45.455 0.00 0.00 0.00 5.68
263 264 5.299782 AGGAACTATAGCTAACTCTTCACGG 59.700 44.000 0.00 0.00 36.02 4.94
264 265 6.380095 AGGAACTATAGCTAACTCTTCACG 57.620 41.667 0.00 0.00 36.02 4.35
265 266 7.492994 CCAAAGGAACTATAGCTAACTCTTCAC 59.507 40.741 0.00 0.00 38.49 3.18
266 267 7.556844 CCAAAGGAACTATAGCTAACTCTTCA 58.443 38.462 0.00 0.00 38.49 3.02
267 268 6.480651 GCCAAAGGAACTATAGCTAACTCTTC 59.519 42.308 0.00 0.00 38.49 2.87
268 269 6.350103 GCCAAAGGAACTATAGCTAACTCTT 58.650 40.000 0.00 0.00 38.49 2.85
269 270 5.163290 GGCCAAAGGAACTATAGCTAACTCT 60.163 44.000 0.00 0.00 38.49 3.24
270 271 5.057819 GGCCAAAGGAACTATAGCTAACTC 58.942 45.833 0.00 0.00 38.49 3.01
271 272 4.473559 TGGCCAAAGGAACTATAGCTAACT 59.526 41.667 0.61 0.00 38.49 2.24
272 273 4.777463 TGGCCAAAGGAACTATAGCTAAC 58.223 43.478 0.61 0.00 38.49 2.34
273 274 4.141482 CCTGGCCAAAGGAACTATAGCTAA 60.141 45.833 7.01 0.00 38.49 3.09
274 275 3.391296 CCTGGCCAAAGGAACTATAGCTA 59.609 47.826 7.01 0.00 38.49 3.32
275 276 2.173569 CCTGGCCAAAGGAACTATAGCT 59.826 50.000 7.01 0.00 38.49 3.32
276 277 2.576615 CCTGGCCAAAGGAACTATAGC 58.423 52.381 7.01 0.00 38.49 2.97
277 278 2.576615 GCCTGGCCAAAGGAACTATAG 58.423 52.381 15.14 0.00 38.49 1.31
278 279 1.134220 CGCCTGGCCAAAGGAACTATA 60.134 52.381 15.14 0.00 38.49 1.31
279 280 0.394352 CGCCTGGCCAAAGGAACTAT 60.394 55.000 15.14 0.00 38.49 2.12
280 281 1.002624 CGCCTGGCCAAAGGAACTA 60.003 57.895 15.14 0.00 38.49 2.24
282 283 2.282180 TCGCCTGGCCAAAGGAAC 60.282 61.111 15.14 0.00 40.02 3.62
283 284 2.034066 CTCGCCTGGCCAAAGGAA 59.966 61.111 15.14 1.25 40.02 3.36
284 285 2.829384 AACTCGCCTGGCCAAAGGA 61.829 57.895 15.14 7.12 40.02 3.36
285 286 2.282462 AACTCGCCTGGCCAAAGG 60.282 61.111 14.12 6.81 40.63 3.11
286 287 0.962356 ATCAACTCGCCTGGCCAAAG 60.962 55.000 14.12 10.73 0.00 2.77
287 288 0.960364 GATCAACTCGCCTGGCCAAA 60.960 55.000 14.12 0.00 0.00 3.28
288 289 1.377202 GATCAACTCGCCTGGCCAA 60.377 57.895 14.12 0.09 0.00 4.52
289 290 2.268920 GATCAACTCGCCTGGCCA 59.731 61.111 14.12 4.71 0.00 5.36
290 291 2.892425 CGATCAACTCGCCTGGCC 60.892 66.667 14.12 0.00 41.14 5.36
291 292 2.892425 CCGATCAACTCGCCTGGC 60.892 66.667 9.11 9.11 46.25 4.85
292 293 2.892425 GCCGATCAACTCGCCTGG 60.892 66.667 0.00 0.00 46.25 4.45
293 294 2.892425 GGCCGATCAACTCGCCTG 60.892 66.667 0.00 0.00 46.25 4.85
294 295 4.514577 CGGCCGATCAACTCGCCT 62.515 66.667 24.07 0.00 46.25 5.52
298 299 3.757248 ATGGCCGGCCGATCAACTC 62.757 63.158 39.00 13.87 39.42 3.01
299 300 3.757248 GATGGCCGGCCGATCAACT 62.757 63.158 39.00 17.64 39.42 3.16
300 301 3.279875 GATGGCCGGCCGATCAAC 61.280 66.667 39.00 21.64 39.42 3.18
301 302 2.623094 AATGATGGCCGGCCGATCAA 62.623 55.000 39.81 29.95 37.26 2.57
302 303 2.623094 AAATGATGGCCGGCCGATCA 62.623 55.000 39.06 39.06 37.71 2.92
303 304 1.455383 AAAATGATGGCCGGCCGATC 61.455 55.000 39.00 35.61 39.42 3.69
304 305 1.455383 GAAAATGATGGCCGGCCGAT 61.455 55.000 39.00 31.15 39.42 4.18
305 306 2.044451 AAAATGATGGCCGGCCGA 60.044 55.556 39.00 28.05 39.42 5.54
306 307 2.120909 AGAAAATGATGGCCGGCCG 61.121 57.895 39.00 21.04 39.42 6.13
307 308 1.322538 ACAGAAAATGATGGCCGGCC 61.323 55.000 39.40 39.40 0.00 6.13
308 309 0.532115 AACAGAAAATGATGGCCGGC 59.468 50.000 21.18 21.18 0.00 6.13
309 310 2.493278 AGAAACAGAAAATGATGGCCGG 59.507 45.455 0.00 0.00 0.00 6.13
310 311 3.441572 AGAGAAACAGAAAATGATGGCCG 59.558 43.478 0.00 0.00 0.00 6.13
311 312 5.184671 AGAAGAGAAACAGAAAATGATGGCC 59.815 40.000 0.00 0.00 0.00 5.36
312 313 6.264841 AGAAGAGAAACAGAAAATGATGGC 57.735 37.500 0.00 0.00 0.00 4.40
313 314 9.538508 AAAAAGAAGAGAAACAGAAAATGATGG 57.461 29.630 0.00 0.00 0.00 3.51
323 324 9.508567 CCAAAAGACTAAAAAGAAGAGAAACAG 57.491 33.333 0.00 0.00 0.00 3.16
324 325 9.020731 ACCAAAAGACTAAAAAGAAGAGAAACA 57.979 29.630 0.00 0.00 0.00 2.83
325 326 9.290483 CACCAAAAGACTAAAAAGAAGAGAAAC 57.710 33.333 0.00 0.00 0.00 2.78
326 327 9.020731 ACACCAAAAGACTAAAAAGAAGAGAAA 57.979 29.630 0.00 0.00 0.00 2.52
327 328 8.575649 ACACCAAAAGACTAAAAAGAAGAGAA 57.424 30.769 0.00 0.00 0.00 2.87
328 329 8.575649 AACACCAAAAGACTAAAAAGAAGAGA 57.424 30.769 0.00 0.00 0.00 3.10
329 330 7.915923 GGAACACCAAAAGACTAAAAAGAAGAG 59.084 37.037 0.00 0.00 0.00 2.85
330 331 7.614192 AGGAACACCAAAAGACTAAAAAGAAGA 59.386 33.333 0.00 0.00 0.00 2.87
331 332 7.772166 AGGAACACCAAAAGACTAAAAAGAAG 58.228 34.615 0.00 0.00 0.00 2.85
332 333 7.614192 AGAGGAACACCAAAAGACTAAAAAGAA 59.386 33.333 0.00 0.00 0.00 2.52
333 334 7.067008 CAGAGGAACACCAAAAGACTAAAAAGA 59.933 37.037 0.00 0.00 0.00 2.52
334 335 7.067008 TCAGAGGAACACCAAAAGACTAAAAAG 59.933 37.037 0.00 0.00 0.00 2.27
335 336 6.887545 TCAGAGGAACACCAAAAGACTAAAAA 59.112 34.615 0.00 0.00 0.00 1.94
336 337 6.419791 TCAGAGGAACACCAAAAGACTAAAA 58.580 36.000 0.00 0.00 0.00 1.52
337 338 5.996644 TCAGAGGAACACCAAAAGACTAAA 58.003 37.500 0.00 0.00 0.00 1.85
338 339 5.623956 TCAGAGGAACACCAAAAGACTAA 57.376 39.130 0.00 0.00 0.00 2.24
339 340 5.623956 TTCAGAGGAACACCAAAAGACTA 57.376 39.130 0.00 0.00 0.00 2.59
340 341 4.503714 TTCAGAGGAACACCAAAAGACT 57.496 40.909 0.00 0.00 0.00 3.24
349 350 9.754822 GATCCTAAGATCGGTTCAGAGGAACAC 62.755 48.148 9.50 0.00 45.29 3.32
350 351 7.859244 GATCCTAAGATCGGTTCAGAGGAACA 61.859 46.154 9.50 0.00 45.29 3.18
351 352 5.508320 GATCCTAAGATCGGTTCAGAGGAAC 60.508 48.000 10.99 0.00 44.20 3.62
352 353 3.977312 TCCTAAGATCGGTTCAGAGGAA 58.023 45.455 6.54 0.00 35.59 3.36
353 354 3.664551 TCCTAAGATCGGTTCAGAGGA 57.335 47.619 5.37 5.37 35.95 3.71
354 355 4.513198 GATCCTAAGATCGGTTCAGAGG 57.487 50.000 0.00 0.00 39.66 3.69
365 366 2.959707 GTGGACGGTGAGATCCTAAGAT 59.040 50.000 0.00 0.00 35.86 2.40
366 367 2.376109 GTGGACGGTGAGATCCTAAGA 58.624 52.381 0.00 0.00 35.86 2.10
367 368 1.409427 GGTGGACGGTGAGATCCTAAG 59.591 57.143 0.00 0.00 35.86 2.18
368 369 1.006758 AGGTGGACGGTGAGATCCTAA 59.993 52.381 0.00 0.00 35.86 2.69
369 370 0.629596 AGGTGGACGGTGAGATCCTA 59.370 55.000 0.00 0.00 35.86 2.94
370 371 0.252284 AAGGTGGACGGTGAGATCCT 60.252 55.000 0.00 0.00 35.86 3.24
371 372 0.613777 AAAGGTGGACGGTGAGATCC 59.386 55.000 0.00 0.00 35.37 3.36
372 373 2.076863 CAAAAGGTGGACGGTGAGATC 58.923 52.381 0.00 0.00 0.00 2.75
373 374 1.420138 ACAAAAGGTGGACGGTGAGAT 59.580 47.619 0.00 0.00 0.00 2.75
374 375 0.834612 ACAAAAGGTGGACGGTGAGA 59.165 50.000 0.00 0.00 0.00 3.27
375 376 2.536761 TACAAAAGGTGGACGGTGAG 57.463 50.000 0.00 0.00 0.00 3.51
376 377 3.071892 AGAATACAAAAGGTGGACGGTGA 59.928 43.478 0.00 0.00 0.00 4.02
377 378 3.408634 AGAATACAAAAGGTGGACGGTG 58.591 45.455 0.00 0.00 0.00 4.94
378 379 3.671716 GAGAATACAAAAGGTGGACGGT 58.328 45.455 0.00 0.00 0.00 4.83
379 380 2.671396 CGAGAATACAAAAGGTGGACGG 59.329 50.000 0.00 0.00 0.00 4.79
380 381 2.093783 GCGAGAATACAAAAGGTGGACG 59.906 50.000 0.00 0.00 0.00 4.79
381 382 3.125316 CAGCGAGAATACAAAAGGTGGAC 59.875 47.826 0.00 0.00 0.00 4.02
382 383 3.334691 CAGCGAGAATACAAAAGGTGGA 58.665 45.455 0.00 0.00 0.00 4.02
383 384 2.159517 GCAGCGAGAATACAAAAGGTGG 60.160 50.000 0.00 0.00 0.00 4.61
384 385 2.744202 AGCAGCGAGAATACAAAAGGTG 59.256 45.455 0.00 0.00 0.00 4.00
385 386 3.059352 AGCAGCGAGAATACAAAAGGT 57.941 42.857 0.00 0.00 0.00 3.50
386 387 3.751621 CAAGCAGCGAGAATACAAAAGG 58.248 45.455 0.00 0.00 0.00 3.11
387 388 3.166657 GCAAGCAGCGAGAATACAAAAG 58.833 45.455 0.00 0.00 0.00 2.27
388 389 3.201726 GCAAGCAGCGAGAATACAAAA 57.798 42.857 0.00 0.00 0.00 2.44
389 390 2.900122 GCAAGCAGCGAGAATACAAA 57.100 45.000 0.00 0.00 0.00 2.83
400 401 5.061560 GTCGATATCATTAGTAGCAAGCAGC 59.938 44.000 3.12 0.00 46.19 5.25
401 402 6.152379 TGTCGATATCATTAGTAGCAAGCAG 58.848 40.000 3.12 0.00 0.00 4.24
402 403 6.084326 TGTCGATATCATTAGTAGCAAGCA 57.916 37.500 3.12 0.00 0.00 3.91
403 404 6.090088 CCTTGTCGATATCATTAGTAGCAAGC 59.910 42.308 3.12 0.00 0.00 4.01
404 405 6.090088 GCCTTGTCGATATCATTAGTAGCAAG 59.910 42.308 3.12 0.00 0.00 4.01
405 406 5.926542 GCCTTGTCGATATCATTAGTAGCAA 59.073 40.000 3.12 0.00 0.00 3.91
406 407 5.470368 GCCTTGTCGATATCATTAGTAGCA 58.530 41.667 3.12 0.00 0.00 3.49
407 408 4.865365 GGCCTTGTCGATATCATTAGTAGC 59.135 45.833 3.12 0.00 0.00 3.58
408 409 6.025749 TGGCCTTGTCGATATCATTAGTAG 57.974 41.667 3.32 0.00 0.00 2.57
409 410 6.183360 TGTTGGCCTTGTCGATATCATTAGTA 60.183 38.462 3.32 0.00 0.00 1.82
410 411 4.955811 TGGCCTTGTCGATATCATTAGT 57.044 40.909 3.32 0.00 0.00 2.24
411 412 5.056480 TGTTGGCCTTGTCGATATCATTAG 58.944 41.667 3.32 0.00 0.00 1.73
412 413 5.029807 TGTTGGCCTTGTCGATATCATTA 57.970 39.130 3.32 0.00 0.00 1.90
413 414 3.884895 TGTTGGCCTTGTCGATATCATT 58.115 40.909 3.32 0.00 0.00 2.57
414 415 3.558931 TGTTGGCCTTGTCGATATCAT 57.441 42.857 3.32 0.00 0.00 2.45
415 416 3.342377 TTGTTGGCCTTGTCGATATCA 57.658 42.857 3.32 0.00 0.00 2.15
416 417 4.601019 CAATTGTTGGCCTTGTCGATATC 58.399 43.478 3.32 0.00 0.00 1.63
417 418 3.181487 GCAATTGTTGGCCTTGTCGATAT 60.181 43.478 3.32 0.00 0.00 1.63
418 419 2.163412 GCAATTGTTGGCCTTGTCGATA 59.837 45.455 3.32 0.00 0.00 2.92
419 420 1.067635 GCAATTGTTGGCCTTGTCGAT 60.068 47.619 3.32 0.00 0.00 3.59
420 421 0.313672 GCAATTGTTGGCCTTGTCGA 59.686 50.000 3.32 0.00 0.00 4.20
421 422 0.314935 AGCAATTGTTGGCCTTGTCG 59.685 50.000 3.32 0.00 0.00 4.35
422 423 1.606224 CCAGCAATTGTTGGCCTTGTC 60.606 52.381 25.82 0.00 39.51 3.18
423 424 0.393820 CCAGCAATTGTTGGCCTTGT 59.606 50.000 25.82 0.00 39.51 3.16
424 425 0.680618 TCCAGCAATTGTTGGCCTTG 59.319 50.000 30.53 11.78 44.78 3.61
425 426 1.551883 GATCCAGCAATTGTTGGCCTT 59.448 47.619 30.53 19.63 44.78 4.35
426 427 1.188863 GATCCAGCAATTGTTGGCCT 58.811 50.000 30.53 21.65 44.78 5.19
427 428 1.188863 AGATCCAGCAATTGTTGGCC 58.811 50.000 30.53 24.01 44.78 5.36
428 429 3.256558 GAAAGATCCAGCAATTGTTGGC 58.743 45.455 30.53 19.97 44.78 4.52
429 430 4.524316 TGAAAGATCCAGCAATTGTTGG 57.476 40.909 29.77 29.77 46.26 3.77
430 431 6.847956 TTTTGAAAGATCCAGCAATTGTTG 57.152 33.333 14.78 14.78 0.00 3.33
455 456 6.128007 CGCCTTGTGTCATCTTATAGGTTTTT 60.128 38.462 0.00 0.00 0.00 1.94
456 457 5.354234 CGCCTTGTGTCATCTTATAGGTTTT 59.646 40.000 0.00 0.00 0.00 2.43
457 458 4.876107 CGCCTTGTGTCATCTTATAGGTTT 59.124 41.667 0.00 0.00 0.00 3.27
458 459 4.442706 CGCCTTGTGTCATCTTATAGGTT 58.557 43.478 0.00 0.00 0.00 3.50
459 460 3.181465 CCGCCTTGTGTCATCTTATAGGT 60.181 47.826 0.00 0.00 0.00 3.08
460 461 3.181465 ACCGCCTTGTGTCATCTTATAGG 60.181 47.826 0.00 0.00 0.00 2.57
461 462 3.804325 CACCGCCTTGTGTCATCTTATAG 59.196 47.826 0.00 0.00 0.00 1.31
471 472 1.589803 GTACTTTCACCGCCTTGTGT 58.410 50.000 0.00 0.00 37.51 3.72
483 484 0.984829 GAACGGCGTACGGTACTTTC 59.015 55.000 15.20 0.00 46.88 2.62
491 492 3.066692 CCGAAAGAACGGCGTACG 58.933 61.111 15.20 11.84 46.20 3.67
498 499 4.844267 ACTGTGAATTTTCCGAAAGAACG 58.156 39.130 0.00 0.00 32.95 3.95
499 500 5.212934 GGACTGTGAATTTTCCGAAAGAAC 58.787 41.667 0.00 0.00 32.95 3.01
500 501 4.884744 TGGACTGTGAATTTTCCGAAAGAA 59.115 37.500 0.00 0.00 0.00 2.52
505 506 3.485463 AGTGGACTGTGAATTTTCCGA 57.515 42.857 0.00 0.00 0.00 4.55
508 509 8.275632 GCAATTTTAAGTGGACTGTGAATTTTC 58.724 33.333 0.00 0.00 0.00 2.29
509 510 7.226523 GGCAATTTTAAGTGGACTGTGAATTTT 59.773 33.333 0.00 0.00 0.00 1.82
514 515 4.211125 TGGCAATTTTAAGTGGACTGTGA 58.789 39.130 0.00 0.00 0.00 3.58
515 516 4.278170 TCTGGCAATTTTAAGTGGACTGTG 59.722 41.667 0.00 0.00 0.00 3.66
517 518 5.452078 TTCTGGCAATTTTAAGTGGACTG 57.548 39.130 0.00 0.00 0.00 3.51
518 519 7.631377 GCATATTCTGGCAATTTTAAGTGGACT 60.631 37.037 0.00 0.00 0.00 3.85
519 520 6.476706 GCATATTCTGGCAATTTTAAGTGGAC 59.523 38.462 0.00 0.00 0.00 4.02
520 521 6.572519 GCATATTCTGGCAATTTTAAGTGGA 58.427 36.000 0.00 0.00 0.00 4.02
521 522 5.459762 CGCATATTCTGGCAATTTTAAGTGG 59.540 40.000 0.00 0.00 0.00 4.00
522 523 6.264832 TCGCATATTCTGGCAATTTTAAGTG 58.735 36.000 0.00 0.00 0.00 3.16
523 524 6.449635 TCGCATATTCTGGCAATTTTAAGT 57.550 33.333 0.00 0.00 0.00 2.24
524 525 7.365741 AGATCGCATATTCTGGCAATTTTAAG 58.634 34.615 0.00 0.00 0.00 1.85
530 531 6.882610 TTTTAGATCGCATATTCTGGCAAT 57.117 33.333 0.00 0.00 0.00 3.56
536 537 8.437360 TGTCATGTTTTTAGATCGCATATTCT 57.563 30.769 0.00 0.00 0.00 2.40
540 541 5.527214 CCCTGTCATGTTTTTAGATCGCATA 59.473 40.000 0.00 0.00 0.00 3.14
542 543 3.689161 CCCTGTCATGTTTTTAGATCGCA 59.311 43.478 0.00 0.00 0.00 5.10
544 545 4.513442 TCCCCTGTCATGTTTTTAGATCG 58.487 43.478 0.00 0.00 0.00 3.69
545 546 6.261826 CAGATCCCCTGTCATGTTTTTAGATC 59.738 42.308 0.00 0.49 38.10 2.75
548 549 5.355350 GTCAGATCCCCTGTCATGTTTTTAG 59.645 44.000 0.00 0.00 43.38 1.85
561 562 4.219392 TCTTCCATATGTCAGATCCCCT 57.781 45.455 1.24 0.00 0.00 4.79
562 563 5.013495 TCAATCTTCCATATGTCAGATCCCC 59.987 44.000 12.20 0.00 0.00 4.81
563 564 6.119240 TCAATCTTCCATATGTCAGATCCC 57.881 41.667 12.20 0.00 0.00 3.85
567 568 6.183810 AGCATCAATCTTCCATATGTCAGA 57.816 37.500 1.24 2.90 0.00 3.27
569 570 6.358991 TGAAGCATCAATCTTCCATATGTCA 58.641 36.000 1.24 0.00 39.24 3.58
574 575 7.494211 CCATTTTGAAGCATCAATCTTCCATA 58.506 34.615 5.03 0.00 44.70 2.74
577 578 4.569564 GCCATTTTGAAGCATCAATCTTCC 59.430 41.667 5.03 0.00 44.70 3.46
583 584 1.672441 GCGGCCATTTTGAAGCATCAA 60.672 47.619 2.24 0.00 43.70 2.57
584 585 0.108709 GCGGCCATTTTGAAGCATCA 60.109 50.000 2.24 0.00 0.00 3.07
586 587 0.390209 GTGCGGCCATTTTGAAGCAT 60.390 50.000 2.24 0.00 36.96 3.79
587 588 1.006337 GTGCGGCCATTTTGAAGCA 60.006 52.632 2.24 0.00 0.00 3.91
589 590 0.388907 CCTGTGCGGCCATTTTGAAG 60.389 55.000 2.24 0.00 0.00 3.02
598 599 0.963355 TTACATTTCCCTGTGCGGCC 60.963 55.000 0.00 0.00 0.00 6.13
600 601 1.094785 CCTTACATTTCCCTGTGCGG 58.905 55.000 0.00 0.00 0.00 5.69
601 602 0.451783 GCCTTACATTTCCCTGTGCG 59.548 55.000 0.00 0.00 0.00 5.34
607 608 0.733150 GTGCTCGCCTTACATTTCCC 59.267 55.000 0.00 0.00 0.00 3.97
617 618 2.158900 ACTTGCTATTATGTGCTCGCCT 60.159 45.455 0.00 0.00 0.00 5.52
619 620 5.177511 TGATTACTTGCTATTATGTGCTCGC 59.822 40.000 0.00 0.00 0.00 5.03
622 623 9.046296 GTACTTGATTACTTGCTATTATGTGCT 57.954 33.333 0.00 0.00 0.00 4.40
623 624 8.283291 GGTACTTGATTACTTGCTATTATGTGC 58.717 37.037 0.00 0.00 0.00 4.57
634 635 7.687941 AAAGATGGTGGTACTTGATTACTTG 57.312 36.000 0.00 0.00 0.00 3.16
642 643 4.404507 CACGAAAAGATGGTGGTACTTG 57.595 45.455 0.00 0.00 34.41 3.16
655 656 5.910723 AGTAACGCAAAATTACCACGAAAAG 59.089 36.000 0.00 0.00 33.74 2.27
660 661 4.391358 CTGAGTAACGCAAAATTACCACG 58.609 43.478 0.00 0.00 33.74 4.94
664 665 5.600908 TGTCCTGAGTAACGCAAAATTAC 57.399 39.130 0.00 0.00 33.50 1.89
666 667 5.508200 TTTGTCCTGAGTAACGCAAAATT 57.492 34.783 0.00 0.00 0.00 1.82
676 677 8.946085 GTAATGTCAATCATTTTGTCCTGAGTA 58.054 33.333 0.00 0.00 43.33 2.59
681 682 6.947733 TGGAGTAATGTCAATCATTTTGTCCT 59.052 34.615 0.00 0.00 43.33 3.85
683 684 7.820648 AGTGGAGTAATGTCAATCATTTTGTC 58.179 34.615 0.00 0.00 43.33 3.18
684 685 7.361201 CGAGTGGAGTAATGTCAATCATTTTGT 60.361 37.037 0.00 0.00 43.33 2.83
685 686 6.963242 CGAGTGGAGTAATGTCAATCATTTTG 59.037 38.462 0.00 0.00 43.33 2.44
690 691 5.127031 TCATCGAGTGGAGTAATGTCAATCA 59.873 40.000 0.00 0.00 0.00 2.57
691 692 5.592054 TCATCGAGTGGAGTAATGTCAATC 58.408 41.667 0.00 0.00 0.00 2.67
697 698 6.238211 GGACAAATTCATCGAGTGGAGTAATG 60.238 42.308 0.00 0.00 0.00 1.90
698 699 5.817816 GGACAAATTCATCGAGTGGAGTAAT 59.182 40.000 0.00 0.00 0.00 1.89
699 700 5.175859 GGACAAATTCATCGAGTGGAGTAA 58.824 41.667 0.00 0.00 0.00 2.24
700 701 4.676986 CGGACAAATTCATCGAGTGGAGTA 60.677 45.833 0.00 0.00 0.00 2.59
701 702 3.600388 GGACAAATTCATCGAGTGGAGT 58.400 45.455 0.00 0.00 0.00 3.85
702 703 2.604914 CGGACAAATTCATCGAGTGGAG 59.395 50.000 0.00 0.00 0.00 3.86
723 727 2.102588 ACTAACATGAGCACCCGTATCC 59.897 50.000 0.00 0.00 0.00 2.59
724 728 3.454371 ACTAACATGAGCACCCGTATC 57.546 47.619 0.00 0.00 0.00 2.24
725 729 3.906720 AACTAACATGAGCACCCGTAT 57.093 42.857 0.00 0.00 0.00 3.06
726 730 3.688694 AAACTAACATGAGCACCCGTA 57.311 42.857 0.00 0.00 0.00 4.02
727 731 2.561478 AAACTAACATGAGCACCCGT 57.439 45.000 0.00 0.00 0.00 5.28
728 732 3.915437 AAAAACTAACATGAGCACCCG 57.085 42.857 0.00 0.00 0.00 5.28
749 753 7.494298 GGAAAACATGAGCCAACTTAAGAAAAA 59.506 33.333 10.09 0.00 0.00 1.94
750 754 6.983890 GGAAAACATGAGCCAACTTAAGAAAA 59.016 34.615 10.09 0.00 0.00 2.29
754 758 5.452078 TGGAAAACATGAGCCAACTTAAG 57.548 39.130 0.00 0.00 0.00 1.85
757 761 4.751767 TTTGGAAAACATGAGCCAACTT 57.248 36.364 0.00 0.00 39.90 2.66
760 764 3.181456 CCCTTTTGGAAAACATGAGCCAA 60.181 43.478 0.00 4.52 44.07 4.52
780 784 2.789409 ACAATAGTCAAGGCAGACCC 57.211 50.000 6.50 0.00 39.34 4.46
782 786 6.017109 TCTCAAAAACAATAGTCAAGGCAGAC 60.017 38.462 2.30 2.30 38.81 3.51
784 788 6.317789 TCTCAAAAACAATAGTCAAGGCAG 57.682 37.500 0.00 0.00 0.00 4.85
793 820 7.298122 ACGCACTGTAATCTCAAAAACAATAG 58.702 34.615 0.00 0.00 0.00 1.73
824 852 1.288037 TGGGCTTGAGCTAGACTAGGA 59.712 52.381 11.48 0.00 41.70 2.94
899 927 3.585525 GAGGGTTTGGGGCTGGACC 62.586 68.421 0.00 0.00 37.93 4.46
1011 1062 1.078848 GGTGAGGATGCAGCTTCGT 60.079 57.895 9.66 3.28 33.68 3.85
1184 1259 3.706373 GGGACAGCTTGGCGGAGA 61.706 66.667 0.00 0.00 0.00 3.71
1197 5578 2.603652 GGGGGACTTGAGGTGGGAC 61.604 68.421 0.00 0.00 0.00 4.46
1692 6086 2.398554 CGCTTGTCCCAACATCCCG 61.399 63.158 0.00 0.00 34.73 5.14
2036 6430 2.361119 TCCATGAATACCTTCGGAGTCG 59.639 50.000 0.00 0.00 33.86 4.18
2135 6529 7.828717 TGTTTCATGTAAATCTGAATCTAGCCA 59.171 33.333 0.00 0.00 31.83 4.75
2246 6642 8.613482 TCTCTCACTCTTAGTTACAATATGACG 58.387 37.037 0.00 0.00 0.00 4.35
2285 6710 4.373156 ACTGATACTTCAAAGGGCTTGT 57.627 40.909 0.00 0.00 36.34 3.16
2429 6857 8.932791 TCCACGATTTTCATCTAAAGTTAAGTC 58.067 33.333 0.00 0.00 0.00 3.01
2434 6870 7.661847 AGAAGTCCACGATTTTCATCTAAAGTT 59.338 33.333 0.00 0.00 0.00 2.66
2554 6990 3.965379 TGCTTCTCCCGTACAAATACA 57.035 42.857 0.00 0.00 0.00 2.29
2591 7027 5.648960 TGCACTCTGCTTTTCATCATCATAA 59.351 36.000 0.00 0.00 45.31 1.90
2732 7171 3.571401 GGGACAAAGATGCCCTCATTATG 59.429 47.826 0.00 0.00 38.86 1.90
2767 7206 7.690256 ACAGAAGACCACTTTCCTATGTTAAT 58.310 34.615 0.00 0.00 36.39 1.40
2777 7216 5.983540 AGGATGATACAGAAGACCACTTTC 58.016 41.667 0.00 0.00 36.39 2.62
2800 7239 7.502226 TGACTTTCCAGCTAGAAATTTTCAGAA 59.498 33.333 7.80 2.46 35.30 3.02
2804 7243 7.389053 TCTCTGACTTTCCAGCTAGAAATTTTC 59.611 37.037 7.80 6.06 35.30 2.29
2805 7244 7.227156 TCTCTGACTTTCCAGCTAGAAATTTT 58.773 34.615 7.80 0.00 35.30 1.82
2829 7271 6.095440 TGCTACATGGCTTTTCTATTTCCTTC 59.905 38.462 0.00 0.00 0.00 3.46
2837 7279 8.752005 AAATTCTATGCTACATGGCTTTTCTA 57.248 30.769 0.00 0.00 0.00 2.10
2838 7280 7.651027 AAATTCTATGCTACATGGCTTTTCT 57.349 32.000 0.00 0.00 0.00 2.52
2845 7287 6.698008 TCCACAAAATTCTATGCTACATGG 57.302 37.500 0.00 0.00 0.00 3.66
2846 7288 9.590451 AAATTCCACAAAATTCTATGCTACATG 57.410 29.630 0.00 0.00 0.00 3.21
2848 7290 8.801299 TGAAATTCCACAAAATTCTATGCTACA 58.199 29.630 0.00 0.00 0.00 2.74
2849 7291 9.638239 TTGAAATTCCACAAAATTCTATGCTAC 57.362 29.630 0.00 0.00 0.00 3.58
2861 7335 7.786030 TGTTCCTACATTTGAAATTCCACAAA 58.214 30.769 0.00 0.00 39.67 2.83
2896 7370 8.545472 AGCTTGGTTATAAACTGAGGTACATAA 58.455 33.333 1.50 0.00 0.00 1.90
2908 7382 5.001232 TCCTCACACAGCTTGGTTATAAAC 58.999 41.667 0.00 0.00 0.00 2.01
2913 7387 3.838317 ACTATCCTCACACAGCTTGGTTA 59.162 43.478 0.00 0.00 0.00 2.85
2926 7400 6.112734 ACAAATAAATGTCGCACTATCCTCA 58.887 36.000 0.00 0.00 0.00 3.86
2938 7412 8.352942 ACTTCAAGTCAGGAACAAATAAATGTC 58.647 33.333 0.00 0.00 31.81 3.06
2945 7419 9.793259 TTCTATAACTTCAAGTCAGGAACAAAT 57.207 29.630 0.00 0.00 0.00 2.32
2957 7431 8.498054 TTTCATCCAGCTTCTATAACTTCAAG 57.502 34.615 0.00 0.00 0.00 3.02
2973 7447 6.427242 CACACCTGAGATATGATTTCATCCAG 59.573 42.308 0.00 1.92 37.76 3.86
2978 7452 5.129980 AGCTCACACCTGAGATATGATTTCA 59.870 40.000 1.79 0.00 46.32 2.69
2984 7458 2.871022 GCAAGCTCACACCTGAGATATG 59.129 50.000 1.79 0.00 42.53 1.78
2986 7460 1.901833 TGCAAGCTCACACCTGAGATA 59.098 47.619 1.79 0.00 42.53 1.98
2991 7465 1.802960 CTTACTGCAAGCTCACACCTG 59.197 52.381 0.00 0.00 37.60 4.00
2992 7466 1.271054 CCTTACTGCAAGCTCACACCT 60.271 52.381 0.00 0.00 37.60 4.00
2993 7467 1.160137 CCTTACTGCAAGCTCACACC 58.840 55.000 0.00 0.00 37.60 4.16
2994 7468 0.519077 GCCTTACTGCAAGCTCACAC 59.481 55.000 0.00 0.00 37.60 3.82
2995 7469 0.108396 TGCCTTACTGCAAGCTCACA 59.892 50.000 0.00 0.00 38.56 3.58
2996 7470 1.238439 TTGCCTTACTGCAAGCTCAC 58.762 50.000 0.00 0.00 45.77 3.51
2997 7471 3.723772 TTGCCTTACTGCAAGCTCA 57.276 47.368 0.00 0.00 45.77 4.26
3032 7506 8.667076 TCAAATCACATATCTTCACCAGTATG 57.333 34.615 0.00 0.00 0.00 2.39
3069 7543 2.031120 CACAAGCACCAGAAAAGGGAA 58.969 47.619 0.00 0.00 0.00 3.97
3073 7547 9.941664 CTATAATTATCACAAGCACCAGAAAAG 57.058 33.333 0.00 0.00 0.00 2.27
3123 7597 8.400947 ACTTCATCAATTGATATGTTTCCTTCG 58.599 33.333 20.32 4.37 33.34 3.79
3125 7599 9.246670 TGACTTCATCAATTGATATGTTTCCTT 57.753 29.630 20.32 0.00 33.02 3.36


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.