Multiple sequence alignment - TraesCS6D01G019700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G019700 chr6D 100.000 2601 0 0 1 2601 7900276 7902876 0.000000e+00 4804.0
1 TraesCS6D01G019700 chr6D 85.077 1233 160 18 1061 2284 7961949 7963166 0.000000e+00 1236.0
2 TraesCS6D01G019700 chr6D 100.000 258 0 0 2901 3158 7903176 7903433 7.920000e-131 477.0
3 TraesCS6D01G019700 chr6D 80.905 199 24 5 2973 3157 7413577 7413379 9.130000e-31 145.0
4 TraesCS6D01G019700 chr6D 96.250 80 2 1 1 80 142858640 142858562 2.560000e-26 130.0
5 TraesCS6D01G019700 chr6A 94.028 1373 60 6 914 2284 8174898 8176250 0.000000e+00 2061.0
6 TraesCS6D01G019700 chr6A 86.279 860 113 3 1127 1985 7300754 7299899 0.000000e+00 929.0
7 TraesCS6D01G019700 chr6A 95.611 319 11 2 2285 2601 8176433 8176750 2.810000e-140 508.0
8 TraesCS6D01G019700 chr6A 84.040 401 20 16 373 763 8174337 8174703 2.330000e-91 346.0
9 TraesCS6D01G019700 chr6A 90.654 214 16 1 2945 3158 8176829 8177038 6.670000e-72 281.0
10 TraesCS6D01G019700 chr6A 88.971 136 9 3 782 911 8174791 8174926 2.520000e-36 163.0
11 TraesCS6D01G019700 chr6B 86.404 1243 145 21 939 2166 13818976 13817743 0.000000e+00 1338.0
12 TraesCS6D01G019700 chr6B 82.866 1319 194 24 964 2264 14340421 14341725 0.000000e+00 1155.0
13 TraesCS6D01G019700 chr6B 88.571 70 5 3 79 146 14386091 14386023 7.260000e-12 82.4
14 TraesCS6D01G019700 chr3B 86.429 1179 145 12 1112 2284 761047628 761046459 0.000000e+00 1277.0
15 TraesCS6D01G019700 chr3B 95.753 259 8 3 2901 3158 761045742 761045486 6.300000e-112 414.0
16 TraesCS6D01G019700 chr3B 90.852 317 14 8 2285 2601 761046284 761045983 8.150000e-111 411.0
17 TraesCS6D01G019700 chr3B 93.750 80 5 0 1 80 76135490 76135569 1.540000e-23 121.0
18 TraesCS6D01G019700 chr3B 90.909 88 6 2 1 88 629778610 629778525 1.990000e-22 117.0
19 TraesCS6D01G019700 chr7A 82.333 1200 196 13 964 2158 657024855 657023667 0.000000e+00 1027.0
20 TraesCS6D01G019700 chr7B 82.098 1201 189 19 964 2158 623951365 623950185 0.000000e+00 1003.0
21 TraesCS6D01G019700 chr7B 82.770 296 45 6 1992 2284 639997597 639997889 3.120000e-65 259.0
22 TraesCS6D01G019700 chr7B 93.902 82 5 0 1 82 665248875 665248956 1.190000e-24 124.0
23 TraesCS6D01G019700 chr7D 82.268 1173 180 26 997 2158 568371547 568370392 0.000000e+00 989.0
24 TraesCS6D01G019700 chr7D 77.609 1188 240 19 987 2165 161390640 161391810 0.000000e+00 697.0
25 TraesCS6D01G019700 chr2B 77.607 1304 255 28 971 2257 709426198 709424915 0.000000e+00 756.0
26 TraesCS6D01G019700 chrUn 93.814 97 5 1 1 96 94922502 94922406 9.130000e-31 145.0
27 TraesCS6D01G019700 chr2D 98.750 80 1 0 1 80 190400347 190400268 3.280000e-30 143.0
28 TraesCS6D01G019700 chr5A 95.000 80 4 0 1 80 180313208 180313129 3.310000e-25 126.0
29 TraesCS6D01G019700 chr3D 93.023 86 6 0 1 86 167404981 167404896 3.310000e-25 126.0
30 TraesCS6D01G019700 chr4A 93.902 82 4 1 1 81 735593801 735593720 4.280000e-24 122.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G019700 chr6D 7900276 7903433 3157 False 2640.500000 4804 100.000000 1 3158 2 chr6D.!!$F2 3157
1 TraesCS6D01G019700 chr6D 7961949 7963166 1217 False 1236.000000 1236 85.077000 1061 2284 1 chr6D.!!$F1 1223
2 TraesCS6D01G019700 chr6A 7299899 7300754 855 True 929.000000 929 86.279000 1127 1985 1 chr6A.!!$R1 858
3 TraesCS6D01G019700 chr6A 8174337 8177038 2701 False 671.800000 2061 90.660800 373 3158 5 chr6A.!!$F1 2785
4 TraesCS6D01G019700 chr6B 13817743 13818976 1233 True 1338.000000 1338 86.404000 939 2166 1 chr6B.!!$R1 1227
5 TraesCS6D01G019700 chr6B 14340421 14341725 1304 False 1155.000000 1155 82.866000 964 2264 1 chr6B.!!$F1 1300
6 TraesCS6D01G019700 chr3B 761045486 761047628 2142 True 700.666667 1277 91.011333 1112 3158 3 chr3B.!!$R2 2046
7 TraesCS6D01G019700 chr7A 657023667 657024855 1188 True 1027.000000 1027 82.333000 964 2158 1 chr7A.!!$R1 1194
8 TraesCS6D01G019700 chr7B 623950185 623951365 1180 True 1003.000000 1003 82.098000 964 2158 1 chr7B.!!$R1 1194
9 TraesCS6D01G019700 chr7D 568370392 568371547 1155 True 989.000000 989 82.268000 997 2158 1 chr7D.!!$R1 1161
10 TraesCS6D01G019700 chr7D 161390640 161391810 1170 False 697.000000 697 77.609000 987 2165 1 chr7D.!!$F1 1178
11 TraesCS6D01G019700 chr2B 709424915 709426198 1283 True 756.000000 756 77.607000 971 2257 1 chr2B.!!$R1 1286

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
212 213 0.031716 TGGCCCTCTGTCTGCTATCT 60.032 55.0 0.0 0.0 0.0 1.98 F
292 293 0.107831 TTGGTTGGCGTACTCTGCTT 59.892 50.0 0.0 0.0 0.0 3.91 F
902 981 0.109723 CTCTCTCTCCTACCCCCTCG 59.890 65.0 0.0 0.0 0.0 4.63 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1445 1544 0.249114 GAAGAGGCGCAGGTAGTAGC 60.249 60.0 10.83 0.0 0.00 3.58 R
1609 1708 1.654954 GCAGTGAGCATCCTTGGCAG 61.655 60.0 0.00 0.0 44.79 4.85 R
2305 2592 0.523072 AAGCAATGTAAGCCAGCACG 59.477 50.0 0.00 0.0 0.00 5.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
53 54 4.120331 GCATCGGTTGTGCCTGGC 62.120 66.667 12.87 12.87 36.61 4.85
54 55 2.672651 CATCGGTTGTGCCTGGCA 60.673 61.111 19.30 19.30 35.60 4.92
63 64 4.806936 TGCCTGGCACTTCTTGAG 57.193 55.556 19.30 0.00 31.71 3.02
64 65 1.073722 TGCCTGGCACTTCTTGAGG 59.926 57.895 19.30 0.00 31.71 3.86
65 66 2.338785 GCCTGGCACTTCTTGAGGC 61.339 63.158 15.17 0.00 42.37 4.70
66 67 1.377994 CCTGGCACTTCTTGAGGCT 59.622 57.895 0.00 0.00 33.29 4.58
67 68 0.251077 CCTGGCACTTCTTGAGGCTT 60.251 55.000 0.00 0.00 33.29 4.35
68 69 1.613836 CTGGCACTTCTTGAGGCTTT 58.386 50.000 0.00 0.00 33.29 3.51
69 70 2.553028 CCTGGCACTTCTTGAGGCTTTA 60.553 50.000 0.00 0.00 33.29 1.85
70 71 3.350833 CTGGCACTTCTTGAGGCTTTAT 58.649 45.455 0.00 0.00 33.29 1.40
71 72 4.517285 CTGGCACTTCTTGAGGCTTTATA 58.483 43.478 0.00 0.00 33.29 0.98
72 73 5.116084 TGGCACTTCTTGAGGCTTTATAT 57.884 39.130 0.00 0.00 33.29 0.86
73 74 4.883585 TGGCACTTCTTGAGGCTTTATATG 59.116 41.667 0.00 0.00 33.29 1.78
74 75 4.884164 GGCACTTCTTGAGGCTTTATATGT 59.116 41.667 0.00 0.00 0.00 2.29
75 76 5.358160 GGCACTTCTTGAGGCTTTATATGTT 59.642 40.000 0.00 0.00 0.00 2.71
76 77 6.542370 GGCACTTCTTGAGGCTTTATATGTTA 59.458 38.462 0.00 0.00 0.00 2.41
77 78 7.254932 GGCACTTCTTGAGGCTTTATATGTTAG 60.255 40.741 0.00 0.00 0.00 2.34
78 79 7.495934 GCACTTCTTGAGGCTTTATATGTTAGA 59.504 37.037 0.00 0.00 0.00 2.10
79 80 9.553064 CACTTCTTGAGGCTTTATATGTTAGAT 57.447 33.333 0.00 0.00 0.00 1.98
83 84 9.342308 TCTTGAGGCTTTATATGTTAGATTTGG 57.658 33.333 0.00 0.00 0.00 3.28
84 85 9.342308 CTTGAGGCTTTATATGTTAGATTTGGA 57.658 33.333 0.00 0.00 0.00 3.53
85 86 9.693739 TTGAGGCTTTATATGTTAGATTTGGAA 57.306 29.630 0.00 0.00 0.00 3.53
86 87 9.693739 TGAGGCTTTATATGTTAGATTTGGAAA 57.306 29.630 0.00 0.00 0.00 3.13
119 120 7.775053 TTTTCTGTTTTCATTGGCTATAGGT 57.225 32.000 1.04 0.00 0.00 3.08
120 121 6.757897 TTCTGTTTTCATTGGCTATAGGTG 57.242 37.500 1.04 0.00 0.00 4.00
121 122 5.192927 TCTGTTTTCATTGGCTATAGGTGG 58.807 41.667 1.04 0.00 0.00 4.61
122 123 4.929479 TGTTTTCATTGGCTATAGGTGGT 58.071 39.130 1.04 0.00 0.00 4.16
123 124 4.704540 TGTTTTCATTGGCTATAGGTGGTG 59.295 41.667 1.04 0.00 0.00 4.17
124 125 3.576078 TTCATTGGCTATAGGTGGTGG 57.424 47.619 1.04 0.00 0.00 4.61
125 126 1.142870 TCATTGGCTATAGGTGGTGGC 59.857 52.381 1.04 0.00 0.00 5.01
126 127 1.133823 CATTGGCTATAGGTGGTGGCA 60.134 52.381 1.04 0.00 0.00 4.92
127 128 0.995803 TTGGCTATAGGTGGTGGCAA 59.004 50.000 1.04 0.00 41.48 4.52
128 129 0.546122 TGGCTATAGGTGGTGGCAAG 59.454 55.000 1.04 0.00 32.14 4.01
129 130 0.546598 GGCTATAGGTGGTGGCAAGT 59.453 55.000 1.04 0.00 0.00 3.16
130 131 1.668419 GCTATAGGTGGTGGCAAGTG 58.332 55.000 1.04 0.00 0.00 3.16
131 132 1.209504 GCTATAGGTGGTGGCAAGTGA 59.790 52.381 1.04 0.00 0.00 3.41
132 133 2.158755 GCTATAGGTGGTGGCAAGTGAT 60.159 50.000 1.04 0.00 0.00 3.06
133 134 2.425143 ATAGGTGGTGGCAAGTGATG 57.575 50.000 0.00 0.00 0.00 3.07
134 135 1.357137 TAGGTGGTGGCAAGTGATGA 58.643 50.000 0.00 0.00 0.00 2.92
135 136 0.700564 AGGTGGTGGCAAGTGATGAT 59.299 50.000 0.00 0.00 0.00 2.45
136 137 0.813184 GGTGGTGGCAAGTGATGATG 59.187 55.000 0.00 0.00 0.00 3.07
137 138 1.538047 GTGGTGGCAAGTGATGATGT 58.462 50.000 0.00 0.00 0.00 3.06
138 139 1.888512 GTGGTGGCAAGTGATGATGTT 59.111 47.619 0.00 0.00 0.00 2.71
139 140 1.887854 TGGTGGCAAGTGATGATGTTG 59.112 47.619 0.00 0.00 0.00 3.33
140 141 1.888512 GGTGGCAAGTGATGATGTTGT 59.111 47.619 0.00 0.00 0.00 3.32
141 142 2.297033 GGTGGCAAGTGATGATGTTGTT 59.703 45.455 0.00 0.00 0.00 2.83
142 143 3.568538 GTGGCAAGTGATGATGTTGTTC 58.431 45.455 0.00 0.00 0.00 3.18
143 144 3.004629 GTGGCAAGTGATGATGTTGTTCA 59.995 43.478 0.00 0.00 0.00 3.18
144 145 3.635836 TGGCAAGTGATGATGTTGTTCAA 59.364 39.130 0.00 0.00 0.00 2.69
145 146 4.232221 GGCAAGTGATGATGTTGTTCAAG 58.768 43.478 0.00 0.00 0.00 3.02
146 147 4.232221 GCAAGTGATGATGTTGTTCAAGG 58.768 43.478 0.00 0.00 0.00 3.61
147 148 4.232221 CAAGTGATGATGTTGTTCAAGGC 58.768 43.478 0.00 0.00 0.00 4.35
148 149 3.759581 AGTGATGATGTTGTTCAAGGCT 58.240 40.909 0.00 0.00 0.00 4.58
149 150 3.504906 AGTGATGATGTTGTTCAAGGCTG 59.495 43.478 0.00 0.00 0.00 4.85
150 151 2.821378 TGATGATGTTGTTCAAGGCTGG 59.179 45.455 0.00 0.00 0.00 4.85
151 152 1.619654 TGATGTTGTTCAAGGCTGGG 58.380 50.000 0.00 0.00 0.00 4.45
152 153 1.144708 TGATGTTGTTCAAGGCTGGGA 59.855 47.619 0.00 0.00 0.00 4.37
153 154 1.541588 GATGTTGTTCAAGGCTGGGAC 59.458 52.381 0.00 0.00 0.00 4.46
154 155 0.817634 TGTTGTTCAAGGCTGGGACG 60.818 55.000 0.00 0.00 0.00 4.79
155 156 0.534203 GTTGTTCAAGGCTGGGACGA 60.534 55.000 0.00 0.00 0.00 4.20
156 157 0.181587 TTGTTCAAGGCTGGGACGAA 59.818 50.000 0.00 0.00 0.00 3.85
157 158 0.534203 TGTTCAAGGCTGGGACGAAC 60.534 55.000 0.00 2.08 37.16 3.95
158 159 1.072505 TTCAAGGCTGGGACGAACC 59.927 57.895 0.00 0.00 38.08 3.62
159 160 1.415672 TTCAAGGCTGGGACGAACCT 61.416 55.000 0.00 0.00 38.98 3.50
160 161 1.376037 CAAGGCTGGGACGAACCTC 60.376 63.158 0.00 0.00 38.98 3.85
161 162 2.943978 AAGGCTGGGACGAACCTCG 61.944 63.158 0.00 0.00 46.93 4.63
162 163 4.452733 GGCTGGGACGAACCTCGG 62.453 72.222 0.67 0.00 45.59 4.63
169 170 4.598257 ACGAACCTCGGCATTCTG 57.402 55.556 0.67 0.00 45.59 3.02
170 171 1.079127 ACGAACCTCGGCATTCTGG 60.079 57.895 0.67 0.00 45.59 3.86
171 172 1.815421 CGAACCTCGGCATTCTGGG 60.815 63.158 0.00 0.00 36.00 4.45
172 173 1.602237 GAACCTCGGCATTCTGGGA 59.398 57.895 0.00 0.00 0.00 4.37
173 174 0.035439 GAACCTCGGCATTCTGGGAA 60.035 55.000 0.00 0.00 0.00 3.97
174 175 0.625849 AACCTCGGCATTCTGGGAAT 59.374 50.000 0.00 0.00 0.00 3.01
175 176 0.107017 ACCTCGGCATTCTGGGAATG 60.107 55.000 13.86 13.86 0.00 2.67
176 177 0.820891 CCTCGGCATTCTGGGAATGG 60.821 60.000 18.08 6.37 0.00 3.16
177 178 1.450531 CTCGGCATTCTGGGAATGGC 61.451 60.000 26.22 26.22 46.06 4.40
178 179 1.454479 CGGCATTCTGGGAATGGCT 60.454 57.895 29.83 0.00 46.96 4.75
179 180 1.731433 CGGCATTCTGGGAATGGCTG 61.731 60.000 29.83 22.95 46.96 4.85
180 181 0.396139 GGCATTCTGGGAATGGCTGA 60.396 55.000 27.69 0.00 46.04 4.26
181 182 1.477553 GCATTCTGGGAATGGCTGAA 58.522 50.000 18.08 0.00 0.00 3.02
182 183 1.407979 GCATTCTGGGAATGGCTGAAG 59.592 52.381 18.08 0.00 0.00 3.02
183 184 2.947243 GCATTCTGGGAATGGCTGAAGA 60.947 50.000 18.08 0.00 0.00 2.87
184 185 3.359033 CATTCTGGGAATGGCTGAAGAA 58.641 45.455 11.18 0.00 0.00 2.52
185 186 2.795231 TCTGGGAATGGCTGAAGAAG 57.205 50.000 0.00 0.00 0.00 2.85
186 187 2.269023 TCTGGGAATGGCTGAAGAAGA 58.731 47.619 0.00 0.00 0.00 2.87
187 188 2.238144 TCTGGGAATGGCTGAAGAAGAG 59.762 50.000 0.00 0.00 0.00 2.85
188 189 1.988107 TGGGAATGGCTGAAGAAGAGT 59.012 47.619 0.00 0.00 0.00 3.24
189 190 2.290514 TGGGAATGGCTGAAGAAGAGTG 60.291 50.000 0.00 0.00 0.00 3.51
190 191 2.026822 GGGAATGGCTGAAGAAGAGTGA 60.027 50.000 0.00 0.00 0.00 3.41
191 192 3.371380 GGGAATGGCTGAAGAAGAGTGAT 60.371 47.826 0.00 0.00 0.00 3.06
192 193 4.268359 GGAATGGCTGAAGAAGAGTGATT 58.732 43.478 0.00 0.00 0.00 2.57
193 194 4.704057 GGAATGGCTGAAGAAGAGTGATTT 59.296 41.667 0.00 0.00 0.00 2.17
194 195 5.392811 GGAATGGCTGAAGAAGAGTGATTTG 60.393 44.000 0.00 0.00 0.00 2.32
195 196 3.415212 TGGCTGAAGAAGAGTGATTTGG 58.585 45.455 0.00 0.00 0.00 3.28
196 197 2.163211 GGCTGAAGAAGAGTGATTTGGC 59.837 50.000 0.00 0.00 0.00 4.52
197 198 2.163211 GCTGAAGAAGAGTGATTTGGCC 59.837 50.000 0.00 0.00 0.00 5.36
198 199 2.751806 CTGAAGAAGAGTGATTTGGCCC 59.248 50.000 0.00 0.00 0.00 5.80
199 200 2.376518 TGAAGAAGAGTGATTTGGCCCT 59.623 45.455 0.00 0.00 0.00 5.19
200 201 2.797177 AGAAGAGTGATTTGGCCCTC 57.203 50.000 0.00 0.00 0.00 4.30
201 202 2.273619 AGAAGAGTGATTTGGCCCTCT 58.726 47.619 0.00 0.00 35.86 3.69
202 203 2.026449 AGAAGAGTGATTTGGCCCTCTG 60.026 50.000 7.61 0.00 34.62 3.35
203 204 1.366319 AGAGTGATTTGGCCCTCTGT 58.634 50.000 0.00 0.00 33.19 3.41
204 205 1.280421 AGAGTGATTTGGCCCTCTGTC 59.720 52.381 0.00 0.00 33.19 3.51
205 206 1.280421 GAGTGATTTGGCCCTCTGTCT 59.720 52.381 0.00 0.00 0.00 3.41
206 207 1.004044 AGTGATTTGGCCCTCTGTCTG 59.996 52.381 0.00 0.00 0.00 3.51
207 208 0.322816 TGATTTGGCCCTCTGTCTGC 60.323 55.000 0.00 0.00 0.00 4.26
208 209 0.034670 GATTTGGCCCTCTGTCTGCT 60.035 55.000 0.00 0.00 0.00 4.24
209 210 1.210478 GATTTGGCCCTCTGTCTGCTA 59.790 52.381 0.00 0.00 0.00 3.49
210 211 1.289160 TTTGGCCCTCTGTCTGCTAT 58.711 50.000 0.00 0.00 0.00 2.97
211 212 0.833287 TTGGCCCTCTGTCTGCTATC 59.167 55.000 0.00 0.00 0.00 2.08
212 213 0.031716 TGGCCCTCTGTCTGCTATCT 60.032 55.000 0.00 0.00 0.00 1.98
213 214 1.217942 TGGCCCTCTGTCTGCTATCTA 59.782 52.381 0.00 0.00 0.00 1.98
214 215 2.158249 TGGCCCTCTGTCTGCTATCTAT 60.158 50.000 0.00 0.00 0.00 1.98
215 216 2.495669 GGCCCTCTGTCTGCTATCTATC 59.504 54.545 0.00 0.00 0.00 2.08
216 217 3.161067 GCCCTCTGTCTGCTATCTATCA 58.839 50.000 0.00 0.00 0.00 2.15
217 218 3.576118 GCCCTCTGTCTGCTATCTATCAA 59.424 47.826 0.00 0.00 0.00 2.57
218 219 4.222588 GCCCTCTGTCTGCTATCTATCAAT 59.777 45.833 0.00 0.00 0.00 2.57
219 220 5.722263 CCCTCTGTCTGCTATCTATCAATG 58.278 45.833 0.00 0.00 0.00 2.82
220 221 5.479724 CCCTCTGTCTGCTATCTATCAATGA 59.520 44.000 0.00 0.00 0.00 2.57
221 222 6.014755 CCCTCTGTCTGCTATCTATCAATGAA 60.015 42.308 0.00 0.00 0.00 2.57
222 223 6.867816 CCTCTGTCTGCTATCTATCAATGAAC 59.132 42.308 0.00 0.00 0.00 3.18
223 224 7.255906 CCTCTGTCTGCTATCTATCAATGAACT 60.256 40.741 0.00 0.00 0.00 3.01
224 225 8.016301 TCTGTCTGCTATCTATCAATGAACTT 57.984 34.615 0.00 0.00 0.00 2.66
225 226 7.924947 TCTGTCTGCTATCTATCAATGAACTTG 59.075 37.037 0.00 0.00 36.09 3.16
226 227 7.559486 TGTCTGCTATCTATCAATGAACTTGT 58.441 34.615 0.00 0.00 36.20 3.16
227 228 8.043113 TGTCTGCTATCTATCAATGAACTTGTT 58.957 33.333 0.00 0.00 36.20 2.83
228 229 8.887717 GTCTGCTATCTATCAATGAACTTGTTT 58.112 33.333 0.00 0.00 36.20 2.83
229 230 8.886719 TCTGCTATCTATCAATGAACTTGTTTG 58.113 33.333 0.00 0.00 36.20 2.93
230 231 7.988737 TGCTATCTATCAATGAACTTGTTTGG 58.011 34.615 0.00 0.00 36.20 3.28
231 232 7.828717 TGCTATCTATCAATGAACTTGTTTGGA 59.171 33.333 0.00 0.00 36.20 3.53
232 233 8.844244 GCTATCTATCAATGAACTTGTTTGGAT 58.156 33.333 0.00 0.00 36.20 3.41
234 235 8.585471 ATCTATCAATGAACTTGTTTGGATGT 57.415 30.769 0.00 0.00 36.20 3.06
235 236 8.044060 TCTATCAATGAACTTGTTTGGATGTC 57.956 34.615 0.00 0.00 36.20 3.06
236 237 5.107109 TCAATGAACTTGTTTGGATGTCG 57.893 39.130 0.00 0.00 36.20 4.35
237 238 4.578516 TCAATGAACTTGTTTGGATGTCGT 59.421 37.500 0.00 0.00 36.20 4.34
238 239 5.067153 TCAATGAACTTGTTTGGATGTCGTT 59.933 36.000 0.00 0.00 36.20 3.85
239 240 4.545823 TGAACTTGTTTGGATGTCGTTC 57.454 40.909 0.00 0.00 0.00 3.95
240 241 3.942115 TGAACTTGTTTGGATGTCGTTCA 59.058 39.130 0.00 0.00 37.51 3.18
241 242 4.035091 TGAACTTGTTTGGATGTCGTTCAG 59.965 41.667 0.00 0.00 35.67 3.02
242 243 3.541632 ACTTGTTTGGATGTCGTTCAGT 58.458 40.909 0.00 0.00 0.00 3.41
243 244 3.945285 ACTTGTTTGGATGTCGTTCAGTT 59.055 39.130 0.00 0.00 0.00 3.16
244 245 4.035208 ACTTGTTTGGATGTCGTTCAGTTC 59.965 41.667 0.00 0.00 0.00 3.01
245 246 2.542178 TGTTTGGATGTCGTTCAGTTCG 59.458 45.455 0.00 0.00 0.00 3.95
246 247 2.798283 GTTTGGATGTCGTTCAGTTCGA 59.202 45.455 0.00 0.00 34.91 3.71
247 248 2.347697 TGGATGTCGTTCAGTTCGAG 57.652 50.000 0.00 0.00 37.99 4.04
248 249 1.067846 TGGATGTCGTTCAGTTCGAGG 60.068 52.381 0.00 0.00 37.99 4.63
249 250 1.201647 GGATGTCGTTCAGTTCGAGGA 59.798 52.381 0.00 0.00 37.99 3.71
250 251 2.520979 GATGTCGTTCAGTTCGAGGAG 58.479 52.381 0.00 0.00 37.99 3.69
251 252 0.596577 TGTCGTTCAGTTCGAGGAGG 59.403 55.000 0.00 0.00 37.99 4.30
252 253 0.879765 GTCGTTCAGTTCGAGGAGGA 59.120 55.000 0.00 0.00 37.99 3.71
253 254 1.473278 GTCGTTCAGTTCGAGGAGGAT 59.527 52.381 0.00 0.00 37.99 3.24
254 255 1.472878 TCGTTCAGTTCGAGGAGGATG 59.527 52.381 0.00 0.00 33.38 3.51
255 256 1.646189 GTTCAGTTCGAGGAGGATGC 58.354 55.000 0.00 0.00 0.00 3.91
256 257 1.066858 GTTCAGTTCGAGGAGGATGCA 60.067 52.381 0.00 0.00 0.00 3.96
257 258 0.820226 TCAGTTCGAGGAGGATGCAG 59.180 55.000 0.00 0.00 0.00 4.41
258 259 0.179089 CAGTTCGAGGAGGATGCAGG 60.179 60.000 0.00 0.00 0.00 4.85
259 260 1.522580 GTTCGAGGAGGATGCAGGC 60.523 63.158 0.00 0.00 0.00 4.85
260 261 1.687146 TTCGAGGAGGATGCAGGCT 60.687 57.895 0.00 0.00 0.00 4.58
261 262 1.267574 TTCGAGGAGGATGCAGGCTT 61.268 55.000 0.00 0.00 0.00 4.35
262 263 1.523258 CGAGGAGGATGCAGGCTTG 60.523 63.158 0.00 0.00 0.00 4.01
263 264 1.153005 GAGGAGGATGCAGGCTTGG 60.153 63.158 0.00 0.00 0.00 3.61
264 265 1.919600 GAGGAGGATGCAGGCTTGGT 61.920 60.000 0.00 0.00 0.00 3.67
265 266 1.452833 GGAGGATGCAGGCTTGGTC 60.453 63.158 0.00 0.00 0.00 4.02
266 267 1.452833 GAGGATGCAGGCTTGGTCC 60.453 63.158 0.00 0.00 0.00 4.46
267 268 2.202236 GAGGATGCAGGCTTGGTCCA 62.202 60.000 10.42 0.00 0.00 4.02
268 269 1.076485 GGATGCAGGCTTGGTCCAT 60.076 57.895 0.00 0.00 0.00 3.41
269 270 0.685458 GGATGCAGGCTTGGTCCATT 60.685 55.000 0.00 0.00 0.00 3.16
270 271 1.188863 GATGCAGGCTTGGTCCATTT 58.811 50.000 0.00 0.00 0.00 2.32
271 272 1.551883 GATGCAGGCTTGGTCCATTTT 59.448 47.619 0.00 0.00 0.00 1.82
272 273 0.680618 TGCAGGCTTGGTCCATTTTG 59.319 50.000 0.00 0.00 0.00 2.44
273 274 0.681175 GCAGGCTTGGTCCATTTTGT 59.319 50.000 0.00 0.00 0.00 2.83
274 275 1.070601 GCAGGCTTGGTCCATTTTGTT 59.929 47.619 0.00 0.00 0.00 2.83
275 276 2.758009 CAGGCTTGGTCCATTTTGTTG 58.242 47.619 0.00 0.00 0.00 3.33
276 277 1.693606 AGGCTTGGTCCATTTTGTTGG 59.306 47.619 0.00 0.00 38.18 3.77
277 278 1.416030 GGCTTGGTCCATTTTGTTGGT 59.584 47.619 0.00 0.00 38.01 3.67
278 279 2.158827 GGCTTGGTCCATTTTGTTGGTT 60.159 45.455 0.00 0.00 38.01 3.67
279 280 2.871633 GCTTGGTCCATTTTGTTGGTTG 59.128 45.455 0.00 0.00 38.01 3.77
280 281 3.465871 CTTGGTCCATTTTGTTGGTTGG 58.534 45.455 0.00 0.00 38.01 3.77
281 282 1.139853 TGGTCCATTTTGTTGGTTGGC 59.860 47.619 0.00 0.00 38.01 4.52
282 283 1.496934 GTCCATTTTGTTGGTTGGCG 58.503 50.000 0.00 0.00 38.01 5.69
283 284 1.115467 TCCATTTTGTTGGTTGGCGT 58.885 45.000 0.00 0.00 38.01 5.68
284 285 2.034812 GTCCATTTTGTTGGTTGGCGTA 59.965 45.455 0.00 0.00 38.01 4.42
285 286 2.034812 TCCATTTTGTTGGTTGGCGTAC 59.965 45.455 0.00 0.00 38.01 3.67
286 287 2.035321 CCATTTTGTTGGTTGGCGTACT 59.965 45.455 0.00 0.00 31.74 2.73
287 288 3.305110 CATTTTGTTGGTTGGCGTACTC 58.695 45.455 0.00 0.00 0.00 2.59
288 289 2.335316 TTTGTTGGTTGGCGTACTCT 57.665 45.000 0.00 0.00 0.00 3.24
289 290 1.588674 TTGTTGGTTGGCGTACTCTG 58.411 50.000 0.00 0.00 0.00 3.35
290 291 0.882927 TGTTGGTTGGCGTACTCTGC 60.883 55.000 0.00 0.00 0.00 4.26
291 292 0.602905 GTTGGTTGGCGTACTCTGCT 60.603 55.000 0.00 0.00 0.00 4.24
292 293 0.107831 TTGGTTGGCGTACTCTGCTT 59.892 50.000 0.00 0.00 0.00 3.91
293 294 0.320421 TGGTTGGCGTACTCTGCTTC 60.320 55.000 0.00 0.00 0.00 3.86
294 295 1.352156 GGTTGGCGTACTCTGCTTCG 61.352 60.000 0.00 0.00 0.00 3.79
295 296 1.736645 TTGGCGTACTCTGCTTCGC 60.737 57.895 0.00 0.00 46.42 4.70
297 298 2.504244 GCGTACTCTGCTTCGCGT 60.504 61.111 5.77 0.00 39.35 6.01
298 299 2.778997 GCGTACTCTGCTTCGCGTG 61.779 63.158 5.77 1.17 39.35 5.34
299 300 1.154282 CGTACTCTGCTTCGCGTGA 60.154 57.895 5.77 0.00 0.00 4.35
300 301 1.128724 CGTACTCTGCTTCGCGTGAG 61.129 60.000 5.77 6.96 37.61 3.51
314 315 1.002366 CGTGAGCTGGAAATCTTCGG 58.998 55.000 0.00 0.00 0.00 4.30
315 316 1.673033 CGTGAGCTGGAAATCTTCGGT 60.673 52.381 0.00 0.00 0.00 4.69
316 317 2.003301 GTGAGCTGGAAATCTTCGGTC 58.997 52.381 0.00 0.00 0.00 4.79
317 318 1.902508 TGAGCTGGAAATCTTCGGTCT 59.097 47.619 0.00 0.00 0.00 3.85
318 319 2.303022 TGAGCTGGAAATCTTCGGTCTT 59.697 45.455 0.00 0.00 0.00 3.01
319 320 3.513912 TGAGCTGGAAATCTTCGGTCTTA 59.486 43.478 0.00 0.00 0.00 2.10
320 321 4.162320 TGAGCTGGAAATCTTCGGTCTTAT 59.838 41.667 0.00 0.00 0.00 1.73
321 322 5.104259 AGCTGGAAATCTTCGGTCTTATT 57.896 39.130 0.00 0.00 0.00 1.40
322 323 4.878397 AGCTGGAAATCTTCGGTCTTATTG 59.122 41.667 0.00 0.00 0.00 1.90
323 324 4.496507 GCTGGAAATCTTCGGTCTTATTGC 60.497 45.833 0.00 0.00 0.00 3.56
324 325 4.843728 TGGAAATCTTCGGTCTTATTGCT 58.156 39.130 0.00 0.00 0.00 3.91
325 326 4.635765 TGGAAATCTTCGGTCTTATTGCTG 59.364 41.667 0.00 0.00 0.00 4.41
326 327 4.876107 GGAAATCTTCGGTCTTATTGCTGA 59.124 41.667 0.00 0.00 0.00 4.26
327 328 5.529060 GGAAATCTTCGGTCTTATTGCTGAT 59.471 40.000 0.00 0.00 0.00 2.90
328 329 6.038714 GGAAATCTTCGGTCTTATTGCTGATT 59.961 38.462 0.00 0.00 0.00 2.57
329 330 5.998454 ATCTTCGGTCTTATTGCTGATTG 57.002 39.130 0.00 0.00 0.00 2.67
330 331 5.084818 TCTTCGGTCTTATTGCTGATTGA 57.915 39.130 0.00 0.00 0.00 2.57
331 332 5.487433 TCTTCGGTCTTATTGCTGATTGAA 58.513 37.500 0.00 0.00 0.00 2.69
332 333 5.351465 TCTTCGGTCTTATTGCTGATTGAAC 59.649 40.000 0.00 0.00 0.00 3.18
333 334 4.832248 TCGGTCTTATTGCTGATTGAACT 58.168 39.130 0.00 0.00 0.00 3.01
334 335 5.245531 TCGGTCTTATTGCTGATTGAACTT 58.754 37.500 0.00 0.00 0.00 2.66
335 336 5.351465 TCGGTCTTATTGCTGATTGAACTTC 59.649 40.000 0.00 0.00 0.00 3.01
336 337 5.122239 CGGTCTTATTGCTGATTGAACTTCA 59.878 40.000 0.00 0.00 0.00 3.02
337 338 6.549952 GGTCTTATTGCTGATTGAACTTCAG 58.450 40.000 0.00 0.00 42.83 3.02
338 339 6.150140 GGTCTTATTGCTGATTGAACTTCAGT 59.850 38.462 2.97 0.00 42.12 3.41
339 340 7.308830 GGTCTTATTGCTGATTGAACTTCAGTT 60.309 37.037 2.97 0.00 42.12 3.16
340 341 8.078596 GTCTTATTGCTGATTGAACTTCAGTTT 58.921 33.333 2.97 0.00 42.12 2.66
341 342 9.283768 TCTTATTGCTGATTGAACTTCAGTTTA 57.716 29.630 2.97 0.00 42.12 2.01
342 343 9.897744 CTTATTGCTGATTGAACTTCAGTTTAA 57.102 29.630 0.00 0.00 42.12 1.52
343 344 9.677567 TTATTGCTGATTGAACTTCAGTTTAAC 57.322 29.630 0.00 0.00 42.12 2.01
344 345 5.747565 TGCTGATTGAACTTCAGTTTAACG 58.252 37.500 0.00 0.00 42.12 3.18
345 346 5.525745 TGCTGATTGAACTTCAGTTTAACGA 59.474 36.000 0.00 0.00 42.12 3.85
346 347 6.074005 GCTGATTGAACTTCAGTTTAACGAG 58.926 40.000 0.00 1.09 42.12 4.18
347 348 6.539649 TGATTGAACTTCAGTTTAACGAGG 57.460 37.500 0.00 0.00 36.55 4.63
348 349 4.806342 TTGAACTTCAGTTTAACGAGGC 57.194 40.909 0.00 0.00 38.56 4.70
349 350 3.135994 TGAACTTCAGTTTAACGAGGCC 58.864 45.455 0.00 0.00 38.56 5.19
350 351 3.181458 TGAACTTCAGTTTAACGAGGCCT 60.181 43.478 3.86 3.86 38.56 5.19
351 352 3.041508 ACTTCAGTTTAACGAGGCCTC 57.958 47.619 23.79 23.79 0.00 4.70
352 353 2.289506 ACTTCAGTTTAACGAGGCCTCC 60.290 50.000 27.20 11.70 0.00 4.30
353 354 1.640917 TCAGTTTAACGAGGCCTCCT 58.359 50.000 27.20 16.60 36.03 3.69
354 355 1.275291 TCAGTTTAACGAGGCCTCCTG 59.725 52.381 27.20 24.07 31.76 3.86
355 356 0.613777 AGTTTAACGAGGCCTCCTGG 59.386 55.000 27.20 15.57 35.43 4.45
356 357 0.323957 GTTTAACGAGGCCTCCTGGT 59.676 55.000 27.20 16.27 44.26 4.00
357 358 0.611714 TTTAACGAGGCCTCCTGGTC 59.388 55.000 27.20 1.77 41.61 4.02
358 359 1.262640 TTAACGAGGCCTCCTGGTCC 61.263 60.000 27.20 0.60 41.61 4.46
359 360 2.449967 TAACGAGGCCTCCTGGTCCA 62.450 60.000 27.20 8.10 41.61 4.02
360 361 3.465403 CGAGGCCTCCTGGTCCAG 61.465 72.222 27.20 12.40 39.18 3.86
361 362 3.791586 GAGGCCTCCTGGTCCAGC 61.792 72.222 23.19 2.58 39.18 4.85
362 363 4.664267 AGGCCTCCTGGTCCAGCA 62.664 66.667 13.99 0.00 39.18 4.41
363 364 3.650950 GGCCTCCTGGTCCAGCAA 61.651 66.667 13.99 2.74 35.27 3.91
364 365 2.679716 GCCTCCTGGTCCAGCAAT 59.320 61.111 13.99 0.00 35.27 3.56
365 366 1.000396 GCCTCCTGGTCCAGCAATT 60.000 57.895 13.99 0.00 35.27 2.32
366 367 1.034292 GCCTCCTGGTCCAGCAATTC 61.034 60.000 13.99 0.00 35.27 2.17
367 368 0.394899 CCTCCTGGTCCAGCAATTCC 60.395 60.000 13.99 0.00 0.00 3.01
368 369 0.329261 CTCCTGGTCCAGCAATTCCA 59.671 55.000 13.99 0.00 0.00 3.53
369 370 0.329261 TCCTGGTCCAGCAATTCCAG 59.671 55.000 13.99 9.89 44.74 3.86
370 371 1.318158 CCTGGTCCAGCAATTCCAGC 61.318 60.000 13.99 0.00 44.06 4.85
371 372 0.323178 CTGGTCCAGCAATTCCAGCT 60.323 55.000 5.79 0.00 44.62 4.24
388 389 3.054878 CAGCTTGTCAAAATTCAGCACC 58.945 45.455 0.00 0.00 0.00 5.01
402 403 3.812262 TCAGCACCTATGGATGACAATG 58.188 45.455 0.00 0.00 0.00 2.82
431 432 7.621426 GCATCTGCTTTGTTCTGAATTGAATTG 60.621 37.037 0.00 0.00 38.21 2.32
434 435 4.445385 GCTTTGTTCTGAATTGAATTGCGT 59.555 37.500 0.00 0.00 0.00 5.24
456 457 6.522761 CGTTTTGGTTTACGTTCTCATCTAG 58.477 40.000 0.00 0.00 33.33 2.43
478 479 5.731591 AGTATGTTGTAGCCTGAACCTTAC 58.268 41.667 0.00 0.00 0.00 2.34
479 480 4.910458 ATGTTGTAGCCTGAACCTTACT 57.090 40.909 0.00 0.00 0.00 2.24
480 481 4.699925 TGTTGTAGCCTGAACCTTACTT 57.300 40.909 0.00 0.00 0.00 2.24
481 482 5.811796 TGTTGTAGCCTGAACCTTACTTA 57.188 39.130 0.00 0.00 0.00 2.24
496 497 5.705905 ACCTTACTTAGTCAAGGCAACATTC 59.294 40.000 15.51 0.00 44.39 2.67
497 498 5.123979 CCTTACTTAGTCAAGGCAACATTCC 59.876 44.000 7.37 0.00 35.24 3.01
521 522 4.056050 AGAGATACAAACTCGCACGTTTT 58.944 39.130 0.00 0.00 39.12 2.43
522 523 4.084537 AGAGATACAAACTCGCACGTTTTG 60.085 41.667 7.86 7.86 39.12 2.44
523 524 2.741122 TACAAACTCGCACGTTTTGG 57.259 45.000 12.78 3.31 35.06 3.28
547 548 1.305549 CAAGCCATTGGGGAAGCCT 60.306 57.895 4.53 0.00 40.01 4.58
548 549 0.906282 CAAGCCATTGGGGAAGCCTT 60.906 55.000 4.53 0.00 40.01 4.35
549 550 0.906282 AAGCCATTGGGGAAGCCTTG 60.906 55.000 4.53 0.00 40.01 3.61
550 551 1.610379 GCCATTGGGGAAGCCTTGT 60.610 57.895 4.53 0.00 40.01 3.16
551 552 1.607801 GCCATTGGGGAAGCCTTGTC 61.608 60.000 4.53 0.00 40.01 3.18
552 553 1.315257 CCATTGGGGAAGCCTTGTCG 61.315 60.000 0.00 0.00 40.01 4.35
553 554 1.678970 ATTGGGGAAGCCTTGTCGC 60.679 57.895 0.00 0.00 0.00 5.19
554 555 2.424842 ATTGGGGAAGCCTTGTCGCA 62.425 55.000 0.00 0.00 0.00 5.10
555 556 3.056328 GGGGAAGCCTTGTCGCAC 61.056 66.667 0.00 0.00 0.00 5.34
556 557 3.423154 GGGAAGCCTTGTCGCACG 61.423 66.667 0.00 0.00 0.00 5.34
557 558 2.357034 GGAAGCCTTGTCGCACGA 60.357 61.111 0.00 0.00 0.00 4.35
558 559 2.383527 GGAAGCCTTGTCGCACGAG 61.384 63.158 0.00 0.00 0.00 4.18
559 560 1.664965 GAAGCCTTGTCGCACGAGT 60.665 57.895 0.00 0.00 0.00 4.18
560 561 1.891060 GAAGCCTTGTCGCACGAGTG 61.891 60.000 0.00 0.00 0.00 3.51
561 562 3.414700 GCCTTGTCGCACGAGTGG 61.415 66.667 5.32 0.00 0.00 4.00
562 563 2.738521 CCTTGTCGCACGAGTGGG 60.739 66.667 13.19 13.19 43.85 4.61
563 564 3.414700 CTTGTCGCACGAGTGGGC 61.415 66.667 14.35 10.44 42.44 5.36
564 565 4.980805 TTGTCGCACGAGTGGGCC 62.981 66.667 14.35 0.00 42.44 5.80
599 600 2.352960 GGGAGCGTGTTGATCAAATCTC 59.647 50.000 10.35 12.93 33.60 2.75
605 606 0.657840 GTTGATCAAATCTCCCCGCG 59.342 55.000 10.35 0.00 0.00 6.46
636 637 1.938577 CGCCCTGATCTTCTGAATGTG 59.061 52.381 0.00 0.00 0.00 3.21
639 640 4.125703 GCCCTGATCTTCTGAATGTGTAG 58.874 47.826 0.00 0.00 0.00 2.74
641 642 5.163405 GCCCTGATCTTCTGAATGTGTAGTA 60.163 44.000 0.00 0.00 0.00 1.82
642 643 6.511416 CCCTGATCTTCTGAATGTGTAGTAG 58.489 44.000 0.00 0.00 0.00 2.57
643 644 5.982516 CCTGATCTTCTGAATGTGTAGTAGC 59.017 44.000 0.00 0.00 0.00 3.58
644 645 5.907207 TGATCTTCTGAATGTGTAGTAGCC 58.093 41.667 0.00 0.00 0.00 3.93
646 647 4.014406 TCTTCTGAATGTGTAGTAGCCGA 58.986 43.478 0.00 0.00 0.00 5.54
647 648 3.777465 TCTGAATGTGTAGTAGCCGAC 57.223 47.619 0.00 0.00 0.00 4.79
649 650 3.699538 TCTGAATGTGTAGTAGCCGACAT 59.300 43.478 0.00 0.00 0.00 3.06
650 651 4.885325 TCTGAATGTGTAGTAGCCGACATA 59.115 41.667 0.00 0.00 0.00 2.29
651 652 5.535030 TCTGAATGTGTAGTAGCCGACATAT 59.465 40.000 0.00 0.00 31.20 1.78
701 705 7.529158 CATAGTGCACACTTGATGAATTTGTA 58.471 34.615 21.04 0.00 42.54 2.41
773 779 9.696917 AAAAGCTATTGTTTTTAGTGAGGAATG 57.303 29.630 0.25 0.00 35.39 2.67
774 780 8.635765 AAGCTATTGTTTTTAGTGAGGAATGA 57.364 30.769 0.00 0.00 0.00 2.57
776 782 8.515414 AGCTATTGTTTTTAGTGAGGAATGAAC 58.485 33.333 0.00 0.00 0.00 3.18
777 783 7.481798 GCTATTGTTTTTAGTGAGGAATGAACG 59.518 37.037 0.00 0.00 0.00 3.95
779 785 4.517453 TGTTTTTAGTGAGGAATGAACGGG 59.483 41.667 0.00 0.00 0.00 5.28
780 786 2.396590 TTAGTGAGGAATGAACGGGC 57.603 50.000 0.00 0.00 0.00 6.13
783 858 1.073923 AGTGAGGAATGAACGGGCTTT 59.926 47.619 0.00 0.00 0.00 3.51
811 886 0.183492 AGCTGGGCTTCACTCACAAA 59.817 50.000 0.00 0.00 33.89 2.83
884 963 0.475906 AGCAAAAGCCTGTGGAGTCT 59.524 50.000 0.00 0.00 0.00 3.24
885 964 0.877743 GCAAAAGCCTGTGGAGTCTC 59.122 55.000 0.00 0.00 0.00 3.36
886 965 1.544314 GCAAAAGCCTGTGGAGTCTCT 60.544 52.381 0.00 0.00 0.00 3.10
887 966 2.421619 CAAAAGCCTGTGGAGTCTCTC 58.578 52.381 0.00 0.00 0.00 3.20
888 967 2.022718 AAAGCCTGTGGAGTCTCTCT 57.977 50.000 0.00 0.00 0.00 3.10
889 968 1.555967 AAGCCTGTGGAGTCTCTCTC 58.444 55.000 0.00 0.00 42.07 3.20
890 969 0.704076 AGCCTGTGGAGTCTCTCTCT 59.296 55.000 0.00 0.00 42.40 3.10
891 970 1.102978 GCCTGTGGAGTCTCTCTCTC 58.897 60.000 0.00 0.00 42.40 3.20
897 976 2.651382 GGAGTCTCTCTCTCCTACCC 57.349 60.000 0.00 0.00 45.56 3.69
898 977 1.144298 GGAGTCTCTCTCTCCTACCCC 59.856 61.905 0.00 0.00 45.56 4.95
899 978 1.144298 GAGTCTCTCTCTCCTACCCCC 59.856 61.905 0.00 0.00 39.86 5.40
900 979 1.228190 GTCTCTCTCTCCTACCCCCT 58.772 60.000 0.00 0.00 0.00 4.79
901 980 1.144298 GTCTCTCTCTCCTACCCCCTC 59.856 61.905 0.00 0.00 0.00 4.30
902 981 0.109723 CTCTCTCTCCTACCCCCTCG 59.890 65.000 0.00 0.00 0.00 4.63
903 982 1.529713 CTCTCTCCTACCCCCTCGC 60.530 68.421 0.00 0.00 0.00 5.03
904 983 2.522193 CTCTCCTACCCCCTCGCC 60.522 72.222 0.00 0.00 0.00 5.54
905 984 4.517934 TCTCCTACCCCCTCGCCG 62.518 72.222 0.00 0.00 0.00 6.46
1445 1544 2.805353 CGTCGTCTCCAAGGTGCG 60.805 66.667 0.00 0.00 0.00 5.34
1494 1593 2.419057 GGAATTCCTCCGGGCATTG 58.581 57.895 17.73 0.00 33.37 2.82
2159 2258 8.677300 GCCAACTAGATTCAGATTTACATGAAA 58.323 33.333 0.00 0.00 38.80 2.69
2265 2369 4.392138 GTGTACTTTGCCTAACTGGATGTC 59.608 45.833 0.00 0.00 38.35 3.06
2305 2592 6.973229 AGTCTGCAATGCATTAAAATTTCC 57.027 33.333 12.53 0.00 38.13 3.13
2327 2614 3.559655 CGTGCTGGCTTACATTGCTTATA 59.440 43.478 0.00 0.00 0.00 0.98
2333 2620 4.137543 GGCTTACATTGCTTATAGCCTGT 58.862 43.478 0.00 8.42 43.67 4.00
2348 2635 4.913335 AGCCTGTCAATGCTTCATTATG 57.087 40.909 0.00 0.00 32.94 1.90
2511 2800 4.311816 AGATGTTGTTCTTTGTGGCAAG 57.688 40.909 0.00 0.00 0.00 4.01
2516 2805 3.921119 TGTTCTTTGTGGCAAGCTATG 57.079 42.857 0.00 0.00 0.00 2.23
2539 2828 2.668279 GCCATGCTAGTTTGTTCGTTGG 60.668 50.000 0.00 0.00 0.00 3.77
2919 3208 1.379527 GGGCTATTTTGGACCTGTCG 58.620 55.000 0.00 0.00 0.00 4.35
2949 3238 9.511272 TTCATAATATGTTGATCAATCTGAGGG 57.489 33.333 12.12 0.00 0.00 4.30
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 37 4.120331 GCCAGGCACAACCGATGC 62.120 66.667 6.55 0.00 46.52 3.91
37 38 2.672651 TGCCAGGCACAACCGATG 60.673 61.111 11.22 0.00 46.52 3.84
46 47 1.073722 CCTCAAGAAGTGCCAGGCA 59.926 57.895 11.22 11.22 35.60 4.75
47 48 2.338785 GCCTCAAGAAGTGCCAGGC 61.339 63.158 3.66 3.66 39.37 4.85
48 49 0.251077 AAGCCTCAAGAAGTGCCAGG 60.251 55.000 0.00 0.00 0.00 4.45
49 50 1.613836 AAAGCCTCAAGAAGTGCCAG 58.386 50.000 0.00 0.00 0.00 4.85
50 51 2.949177 TAAAGCCTCAAGAAGTGCCA 57.051 45.000 0.00 0.00 0.00 4.92
51 52 4.884164 ACATATAAAGCCTCAAGAAGTGCC 59.116 41.667 0.00 0.00 0.00 5.01
52 53 6.442513 AACATATAAAGCCTCAAGAAGTGC 57.557 37.500 0.00 0.00 0.00 4.40
53 54 8.948631 TCTAACATATAAAGCCTCAAGAAGTG 57.051 34.615 0.00 0.00 0.00 3.16
57 58 9.342308 CCAAATCTAACATATAAAGCCTCAAGA 57.658 33.333 0.00 0.00 0.00 3.02
58 59 9.342308 TCCAAATCTAACATATAAAGCCTCAAG 57.658 33.333 0.00 0.00 0.00 3.02
59 60 9.693739 TTCCAAATCTAACATATAAAGCCTCAA 57.306 29.630 0.00 0.00 0.00 3.02
60 61 9.693739 TTTCCAAATCTAACATATAAAGCCTCA 57.306 29.630 0.00 0.00 0.00 3.86
94 95 8.087750 CACCTATAGCCAATGAAAACAGAAAAA 58.912 33.333 0.00 0.00 0.00 1.94
95 96 7.309744 CCACCTATAGCCAATGAAAACAGAAAA 60.310 37.037 0.00 0.00 0.00 2.29
96 97 6.152661 CCACCTATAGCCAATGAAAACAGAAA 59.847 38.462 0.00 0.00 0.00 2.52
97 98 5.652014 CCACCTATAGCCAATGAAAACAGAA 59.348 40.000 0.00 0.00 0.00 3.02
98 99 5.192927 CCACCTATAGCCAATGAAAACAGA 58.807 41.667 0.00 0.00 0.00 3.41
99 100 4.949856 ACCACCTATAGCCAATGAAAACAG 59.050 41.667 0.00 0.00 0.00 3.16
100 101 4.704540 CACCACCTATAGCCAATGAAAACA 59.295 41.667 0.00 0.00 0.00 2.83
101 102 4.097892 CCACCACCTATAGCCAATGAAAAC 59.902 45.833 0.00 0.00 0.00 2.43
102 103 4.277476 CCACCACCTATAGCCAATGAAAA 58.723 43.478 0.00 0.00 0.00 2.29
103 104 3.897239 CCACCACCTATAGCCAATGAAA 58.103 45.455 0.00 0.00 0.00 2.69
104 105 2.422803 GCCACCACCTATAGCCAATGAA 60.423 50.000 0.00 0.00 0.00 2.57
105 106 1.142870 GCCACCACCTATAGCCAATGA 59.857 52.381 0.00 0.00 0.00 2.57
106 107 1.133823 TGCCACCACCTATAGCCAATG 60.134 52.381 0.00 0.00 0.00 2.82
107 108 1.221635 TGCCACCACCTATAGCCAAT 58.778 50.000 0.00 0.00 0.00 3.16
108 109 0.995803 TTGCCACCACCTATAGCCAA 59.004 50.000 0.00 0.00 0.00 4.52
109 110 0.546122 CTTGCCACCACCTATAGCCA 59.454 55.000 0.00 0.00 0.00 4.75
110 111 0.546598 ACTTGCCACCACCTATAGCC 59.453 55.000 0.00 0.00 0.00 3.93
111 112 1.209504 TCACTTGCCACCACCTATAGC 59.790 52.381 0.00 0.00 0.00 2.97
112 113 3.134623 TCATCACTTGCCACCACCTATAG 59.865 47.826 0.00 0.00 0.00 1.31
113 114 3.111484 TCATCACTTGCCACCACCTATA 58.889 45.455 0.00 0.00 0.00 1.31
114 115 1.915489 TCATCACTTGCCACCACCTAT 59.085 47.619 0.00 0.00 0.00 2.57
115 116 1.357137 TCATCACTTGCCACCACCTA 58.643 50.000 0.00 0.00 0.00 3.08
116 117 0.700564 ATCATCACTTGCCACCACCT 59.299 50.000 0.00 0.00 0.00 4.00
117 118 0.813184 CATCATCACTTGCCACCACC 59.187 55.000 0.00 0.00 0.00 4.61
118 119 1.538047 ACATCATCACTTGCCACCAC 58.462 50.000 0.00 0.00 0.00 4.16
119 120 1.887854 CAACATCATCACTTGCCACCA 59.112 47.619 0.00 0.00 0.00 4.17
120 121 1.888512 ACAACATCATCACTTGCCACC 59.111 47.619 0.00 0.00 0.00 4.61
121 122 3.004629 TGAACAACATCATCACTTGCCAC 59.995 43.478 0.00 0.00 0.00 5.01
122 123 3.220940 TGAACAACATCATCACTTGCCA 58.779 40.909 0.00 0.00 0.00 4.92
123 124 3.921119 TGAACAACATCATCACTTGCC 57.079 42.857 0.00 0.00 0.00 4.52
124 125 4.232221 CCTTGAACAACATCATCACTTGC 58.768 43.478 0.00 0.00 0.00 4.01
125 126 4.022589 AGCCTTGAACAACATCATCACTTG 60.023 41.667 0.00 0.00 0.00 3.16
126 127 4.022589 CAGCCTTGAACAACATCATCACTT 60.023 41.667 0.00 0.00 0.00 3.16
127 128 3.504906 CAGCCTTGAACAACATCATCACT 59.495 43.478 0.00 0.00 0.00 3.41
128 129 3.366679 CCAGCCTTGAACAACATCATCAC 60.367 47.826 0.00 0.00 0.00 3.06
129 130 2.821378 CCAGCCTTGAACAACATCATCA 59.179 45.455 0.00 0.00 0.00 3.07
130 131 2.165030 CCCAGCCTTGAACAACATCATC 59.835 50.000 0.00 0.00 0.00 2.92
131 132 2.173519 CCCAGCCTTGAACAACATCAT 58.826 47.619 0.00 0.00 0.00 2.45
132 133 1.144708 TCCCAGCCTTGAACAACATCA 59.855 47.619 0.00 0.00 0.00 3.07
133 134 1.541588 GTCCCAGCCTTGAACAACATC 59.458 52.381 0.00 0.00 0.00 3.06
134 135 1.620822 GTCCCAGCCTTGAACAACAT 58.379 50.000 0.00 0.00 0.00 2.71
135 136 0.817634 CGTCCCAGCCTTGAACAACA 60.818 55.000 0.00 0.00 0.00 3.33
136 137 0.534203 TCGTCCCAGCCTTGAACAAC 60.534 55.000 0.00 0.00 0.00 3.32
137 138 0.181587 TTCGTCCCAGCCTTGAACAA 59.818 50.000 0.00 0.00 0.00 2.83
138 139 0.534203 GTTCGTCCCAGCCTTGAACA 60.534 55.000 0.00 0.00 38.93 3.18
139 140 1.235281 GGTTCGTCCCAGCCTTGAAC 61.235 60.000 0.00 0.00 38.50 3.18
140 141 1.072505 GGTTCGTCCCAGCCTTGAA 59.927 57.895 0.00 0.00 0.00 2.69
141 142 1.827399 GAGGTTCGTCCCAGCCTTGA 61.827 60.000 0.00 0.00 36.75 3.02
142 143 1.376037 GAGGTTCGTCCCAGCCTTG 60.376 63.158 0.00 0.00 36.75 3.61
143 144 2.943978 CGAGGTTCGTCCCAGCCTT 61.944 63.158 0.00 0.00 34.72 4.35
144 145 3.382832 CGAGGTTCGTCCCAGCCT 61.383 66.667 0.00 0.00 34.72 4.58
145 146 4.452733 CCGAGGTTCGTCCCAGCC 62.453 72.222 0.00 0.00 38.40 4.85
147 148 2.521958 AATGCCGAGGTTCGTCCCAG 62.522 60.000 0.00 0.00 38.40 4.45
148 149 2.515996 GAATGCCGAGGTTCGTCCCA 62.516 60.000 0.00 0.00 38.40 4.37
149 150 1.814169 GAATGCCGAGGTTCGTCCC 60.814 63.158 0.00 0.00 38.40 4.46
150 151 1.084370 CAGAATGCCGAGGTTCGTCC 61.084 60.000 0.00 0.00 38.40 4.79
151 152 1.084370 CCAGAATGCCGAGGTTCGTC 61.084 60.000 0.00 0.00 38.40 4.20
152 153 1.079127 CCAGAATGCCGAGGTTCGT 60.079 57.895 0.00 0.00 38.40 3.85
153 154 1.815421 CCCAGAATGCCGAGGTTCG 60.815 63.158 0.00 0.00 40.07 3.95
154 155 0.035439 TTCCCAGAATGCCGAGGTTC 60.035 55.000 0.00 0.00 31.97 3.62
155 156 0.625849 ATTCCCAGAATGCCGAGGTT 59.374 50.000 0.00 0.00 31.97 3.50
156 157 0.107017 CATTCCCAGAATGCCGAGGT 60.107 55.000 4.50 0.00 31.97 3.85
157 158 0.820891 CCATTCCCAGAATGCCGAGG 60.821 60.000 11.07 0.00 31.97 4.63
158 159 1.450531 GCCATTCCCAGAATGCCGAG 61.451 60.000 11.07 0.65 31.97 4.63
159 160 1.453745 GCCATTCCCAGAATGCCGA 60.454 57.895 11.07 0.00 31.97 5.54
160 161 1.454479 AGCCATTCCCAGAATGCCG 60.454 57.895 11.07 1.57 31.97 5.69
161 162 0.396139 TCAGCCATTCCCAGAATGCC 60.396 55.000 11.07 1.40 31.97 4.40
162 163 1.407979 CTTCAGCCATTCCCAGAATGC 59.592 52.381 11.07 7.45 31.97 3.56
163 164 3.008835 TCTTCAGCCATTCCCAGAATG 57.991 47.619 9.82 9.82 0.00 2.67
164 165 3.267812 TCTTCTTCAGCCATTCCCAGAAT 59.732 43.478 0.00 0.00 0.00 2.40
165 166 2.644299 TCTTCTTCAGCCATTCCCAGAA 59.356 45.455 0.00 0.00 0.00 3.02
166 167 2.238144 CTCTTCTTCAGCCATTCCCAGA 59.762 50.000 0.00 0.00 0.00 3.86
167 168 2.026449 ACTCTTCTTCAGCCATTCCCAG 60.026 50.000 0.00 0.00 0.00 4.45
168 169 1.988107 ACTCTTCTTCAGCCATTCCCA 59.012 47.619 0.00 0.00 0.00 4.37
169 170 2.026822 TCACTCTTCTTCAGCCATTCCC 60.027 50.000 0.00 0.00 0.00 3.97
170 171 3.340814 TCACTCTTCTTCAGCCATTCC 57.659 47.619 0.00 0.00 0.00 3.01
171 172 5.392811 CCAAATCACTCTTCTTCAGCCATTC 60.393 44.000 0.00 0.00 0.00 2.67
172 173 4.461781 CCAAATCACTCTTCTTCAGCCATT 59.538 41.667 0.00 0.00 0.00 3.16
173 174 4.015084 CCAAATCACTCTTCTTCAGCCAT 58.985 43.478 0.00 0.00 0.00 4.40
174 175 3.415212 CCAAATCACTCTTCTTCAGCCA 58.585 45.455 0.00 0.00 0.00 4.75
175 176 2.163211 GCCAAATCACTCTTCTTCAGCC 59.837 50.000 0.00 0.00 0.00 4.85
176 177 2.163211 GGCCAAATCACTCTTCTTCAGC 59.837 50.000 0.00 0.00 0.00 4.26
177 178 2.751806 GGGCCAAATCACTCTTCTTCAG 59.248 50.000 4.39 0.00 0.00 3.02
178 179 2.376518 AGGGCCAAATCACTCTTCTTCA 59.623 45.455 6.18 0.00 0.00 3.02
179 180 3.013219 GAGGGCCAAATCACTCTTCTTC 58.987 50.000 6.18 0.00 0.00 2.87
180 181 2.646798 AGAGGGCCAAATCACTCTTCTT 59.353 45.455 6.18 0.00 36.99 2.52
181 182 2.026449 CAGAGGGCCAAATCACTCTTCT 60.026 50.000 6.18 0.00 38.18 2.85
182 183 2.290577 ACAGAGGGCCAAATCACTCTTC 60.291 50.000 6.18 0.00 38.18 2.87
183 184 1.707427 ACAGAGGGCCAAATCACTCTT 59.293 47.619 6.18 0.00 38.18 2.85
184 185 1.280421 GACAGAGGGCCAAATCACTCT 59.720 52.381 6.18 2.61 40.72 3.24
185 186 1.280421 AGACAGAGGGCCAAATCACTC 59.720 52.381 6.18 0.00 0.00 3.51
186 187 1.004044 CAGACAGAGGGCCAAATCACT 59.996 52.381 6.18 0.00 0.00 3.41
187 188 1.457346 CAGACAGAGGGCCAAATCAC 58.543 55.000 6.18 0.00 0.00 3.06
188 189 0.322816 GCAGACAGAGGGCCAAATCA 60.323 55.000 6.18 0.00 0.00 2.57
189 190 0.034670 AGCAGACAGAGGGCCAAATC 60.035 55.000 6.18 0.00 0.00 2.17
190 191 1.289160 TAGCAGACAGAGGGCCAAAT 58.711 50.000 6.18 0.00 0.00 2.32
191 192 1.210478 GATAGCAGACAGAGGGCCAAA 59.790 52.381 6.18 0.00 0.00 3.28
192 193 0.833287 GATAGCAGACAGAGGGCCAA 59.167 55.000 6.18 0.00 0.00 4.52
193 194 0.031716 AGATAGCAGACAGAGGGCCA 60.032 55.000 6.18 0.00 0.00 5.36
194 195 2.002505 TAGATAGCAGACAGAGGGCC 57.997 55.000 0.00 0.00 0.00 5.80
195 196 3.161067 TGATAGATAGCAGACAGAGGGC 58.839 50.000 0.00 0.00 0.00 5.19
196 197 5.479724 TCATTGATAGATAGCAGACAGAGGG 59.520 44.000 0.00 0.00 0.00 4.30
197 198 6.587206 TCATTGATAGATAGCAGACAGAGG 57.413 41.667 0.00 0.00 0.00 3.69
198 199 7.660112 AGTTCATTGATAGATAGCAGACAGAG 58.340 38.462 0.00 0.00 0.00 3.35
199 200 7.594351 AGTTCATTGATAGATAGCAGACAGA 57.406 36.000 0.00 0.00 0.00 3.41
200 201 7.710044 ACAAGTTCATTGATAGATAGCAGACAG 59.290 37.037 0.00 0.00 41.83 3.51
201 202 7.559486 ACAAGTTCATTGATAGATAGCAGACA 58.441 34.615 0.00 0.00 41.83 3.41
202 203 8.430801 AACAAGTTCATTGATAGATAGCAGAC 57.569 34.615 0.00 0.00 41.83 3.51
203 204 8.886719 CAAACAAGTTCATTGATAGATAGCAGA 58.113 33.333 0.00 0.00 41.83 4.26
204 205 8.127327 CCAAACAAGTTCATTGATAGATAGCAG 58.873 37.037 0.00 0.00 41.83 4.24
205 206 7.828717 TCCAAACAAGTTCATTGATAGATAGCA 59.171 33.333 0.00 0.00 41.83 3.49
206 207 8.213518 TCCAAACAAGTTCATTGATAGATAGC 57.786 34.615 0.00 0.00 41.83 2.97
208 209 9.685276 ACATCCAAACAAGTTCATTGATAGATA 57.315 29.630 0.00 0.00 41.83 1.98
209 210 8.585471 ACATCCAAACAAGTTCATTGATAGAT 57.415 30.769 0.00 0.00 41.83 1.98
210 211 7.148423 CGACATCCAAACAAGTTCATTGATAGA 60.148 37.037 0.00 0.00 41.83 1.98
211 212 6.963242 CGACATCCAAACAAGTTCATTGATAG 59.037 38.462 0.00 0.00 41.83 2.08
212 213 6.429692 ACGACATCCAAACAAGTTCATTGATA 59.570 34.615 0.00 0.00 41.83 2.15
213 214 5.241506 ACGACATCCAAACAAGTTCATTGAT 59.758 36.000 0.00 0.00 41.83 2.57
214 215 4.578516 ACGACATCCAAACAAGTTCATTGA 59.421 37.500 0.00 0.00 41.83 2.57
215 216 4.858935 ACGACATCCAAACAAGTTCATTG 58.141 39.130 0.00 0.00 45.01 2.82
216 217 5.067153 TGAACGACATCCAAACAAGTTCATT 59.933 36.000 4.30 0.00 40.68 2.57
217 218 4.578516 TGAACGACATCCAAACAAGTTCAT 59.421 37.500 4.30 0.00 40.68 2.57
218 219 3.942115 TGAACGACATCCAAACAAGTTCA 59.058 39.130 4.30 4.30 42.47 3.18
219 220 4.035208 ACTGAACGACATCCAAACAAGTTC 59.965 41.667 0.00 0.00 37.56 3.01
220 221 3.945285 ACTGAACGACATCCAAACAAGTT 59.055 39.130 0.00 0.00 0.00 2.66
221 222 3.541632 ACTGAACGACATCCAAACAAGT 58.458 40.909 0.00 0.00 0.00 3.16
222 223 4.527564 GAACTGAACGACATCCAAACAAG 58.472 43.478 0.00 0.00 0.00 3.16
223 224 3.001838 CGAACTGAACGACATCCAAACAA 59.998 43.478 0.00 0.00 0.00 2.83
224 225 2.542178 CGAACTGAACGACATCCAAACA 59.458 45.455 0.00 0.00 0.00 2.83
225 226 2.798283 TCGAACTGAACGACATCCAAAC 59.202 45.455 0.00 0.00 34.85 2.93
226 227 3.057019 CTCGAACTGAACGACATCCAAA 58.943 45.455 0.00 0.00 35.88 3.28
227 228 2.609491 CCTCGAACTGAACGACATCCAA 60.609 50.000 0.00 0.00 35.88 3.53
228 229 1.067846 CCTCGAACTGAACGACATCCA 60.068 52.381 0.00 0.00 35.88 3.41
229 230 1.201647 TCCTCGAACTGAACGACATCC 59.798 52.381 0.00 0.00 35.88 3.51
230 231 2.520979 CTCCTCGAACTGAACGACATC 58.479 52.381 0.00 0.00 35.88 3.06
231 232 1.202582 CCTCCTCGAACTGAACGACAT 59.797 52.381 0.00 0.00 35.88 3.06
232 233 0.596577 CCTCCTCGAACTGAACGACA 59.403 55.000 0.00 0.00 35.88 4.35
233 234 0.879765 TCCTCCTCGAACTGAACGAC 59.120 55.000 0.00 0.00 35.88 4.34
234 235 1.472878 CATCCTCCTCGAACTGAACGA 59.527 52.381 0.00 0.00 38.11 3.85
235 236 1.914634 CATCCTCCTCGAACTGAACG 58.085 55.000 0.00 0.00 0.00 3.95
236 237 1.066858 TGCATCCTCCTCGAACTGAAC 60.067 52.381 0.00 0.00 0.00 3.18
237 238 1.205655 CTGCATCCTCCTCGAACTGAA 59.794 52.381 0.00 0.00 0.00 3.02
238 239 0.820226 CTGCATCCTCCTCGAACTGA 59.180 55.000 0.00 0.00 0.00 3.41
239 240 0.179089 CCTGCATCCTCCTCGAACTG 60.179 60.000 0.00 0.00 0.00 3.16
240 241 1.965754 GCCTGCATCCTCCTCGAACT 61.966 60.000 0.00 0.00 0.00 3.01
241 242 1.522580 GCCTGCATCCTCCTCGAAC 60.523 63.158 0.00 0.00 0.00 3.95
242 243 1.267574 AAGCCTGCATCCTCCTCGAA 61.268 55.000 0.00 0.00 0.00 3.71
243 244 1.687146 AAGCCTGCATCCTCCTCGA 60.687 57.895 0.00 0.00 0.00 4.04
244 245 1.523258 CAAGCCTGCATCCTCCTCG 60.523 63.158 0.00 0.00 0.00 4.63
245 246 1.153005 CCAAGCCTGCATCCTCCTC 60.153 63.158 0.00 0.00 0.00 3.71
246 247 1.919600 GACCAAGCCTGCATCCTCCT 61.920 60.000 0.00 0.00 0.00 3.69
247 248 1.452833 GACCAAGCCTGCATCCTCC 60.453 63.158 0.00 0.00 0.00 4.30
248 249 1.452833 GGACCAAGCCTGCATCCTC 60.453 63.158 0.00 0.00 0.00 3.71
249 250 1.578215 ATGGACCAAGCCTGCATCCT 61.578 55.000 0.00 0.00 30.87 3.24
250 251 0.685458 AATGGACCAAGCCTGCATCC 60.685 55.000 0.00 0.00 0.00 3.51
251 252 1.188863 AAATGGACCAAGCCTGCATC 58.811 50.000 0.00 0.00 0.00 3.91
252 253 1.276989 CAAAATGGACCAAGCCTGCAT 59.723 47.619 0.00 0.00 0.00 3.96
253 254 0.680618 CAAAATGGACCAAGCCTGCA 59.319 50.000 0.00 0.00 0.00 4.41
254 255 0.681175 ACAAAATGGACCAAGCCTGC 59.319 50.000 0.00 0.00 0.00 4.85
255 256 2.548493 CCAACAAAATGGACCAAGCCTG 60.548 50.000 0.00 0.00 43.54 4.85
256 257 1.693606 CCAACAAAATGGACCAAGCCT 59.306 47.619 0.00 0.00 43.54 4.58
257 258 1.416030 ACCAACAAAATGGACCAAGCC 59.584 47.619 0.00 0.00 43.54 4.35
258 259 2.871633 CAACCAACAAAATGGACCAAGC 59.128 45.455 0.00 0.00 43.54 4.01
259 260 3.465871 CCAACCAACAAAATGGACCAAG 58.534 45.455 0.00 0.00 43.54 3.61
260 261 2.420687 GCCAACCAACAAAATGGACCAA 60.421 45.455 0.00 0.00 43.54 3.67
261 262 1.139853 GCCAACCAACAAAATGGACCA 59.860 47.619 0.00 0.00 43.54 4.02
262 263 1.871822 CGCCAACCAACAAAATGGACC 60.872 52.381 0.00 0.00 43.54 4.46
263 264 1.202475 ACGCCAACCAACAAAATGGAC 60.202 47.619 0.00 0.00 43.54 4.02
264 265 1.115467 ACGCCAACCAACAAAATGGA 58.885 45.000 0.00 0.00 43.54 3.41
265 266 2.035321 AGTACGCCAACCAACAAAATGG 59.965 45.455 0.00 0.00 46.38 3.16
266 267 3.004315 AGAGTACGCCAACCAACAAAATG 59.996 43.478 0.00 0.00 0.00 2.32
267 268 3.004315 CAGAGTACGCCAACCAACAAAAT 59.996 43.478 0.00 0.00 0.00 1.82
268 269 2.356382 CAGAGTACGCCAACCAACAAAA 59.644 45.455 0.00 0.00 0.00 2.44
269 270 1.944024 CAGAGTACGCCAACCAACAAA 59.056 47.619 0.00 0.00 0.00 2.83
270 271 1.588674 CAGAGTACGCCAACCAACAA 58.411 50.000 0.00 0.00 0.00 2.83
271 272 0.882927 GCAGAGTACGCCAACCAACA 60.883 55.000 0.00 0.00 0.00 3.33
272 273 0.602905 AGCAGAGTACGCCAACCAAC 60.603 55.000 0.00 0.00 0.00 3.77
273 274 0.107831 AAGCAGAGTACGCCAACCAA 59.892 50.000 0.00 0.00 0.00 3.67
274 275 0.320421 GAAGCAGAGTACGCCAACCA 60.320 55.000 0.00 0.00 0.00 3.67
275 276 1.352156 CGAAGCAGAGTACGCCAACC 61.352 60.000 0.00 0.00 0.00 3.77
276 277 2.070861 CGAAGCAGAGTACGCCAAC 58.929 57.895 0.00 0.00 0.00 3.77
277 278 4.571250 CGAAGCAGAGTACGCCAA 57.429 55.556 0.00 0.00 0.00 4.52
290 291 0.371645 GATTTCCAGCTCACGCGAAG 59.628 55.000 15.93 11.31 42.32 3.79
291 292 0.037326 AGATTTCCAGCTCACGCGAA 60.037 50.000 15.93 0.00 42.32 4.70
292 293 0.037326 AAGATTTCCAGCTCACGCGA 60.037 50.000 15.93 0.00 42.32 5.87
293 294 0.371645 GAAGATTTCCAGCTCACGCG 59.628 55.000 3.53 3.53 42.32 6.01
294 295 0.371645 CGAAGATTTCCAGCTCACGC 59.628 55.000 0.00 0.00 0.00 5.34
295 296 1.002366 CCGAAGATTTCCAGCTCACG 58.998 55.000 0.00 0.00 0.00 4.35
296 297 2.003301 GACCGAAGATTTCCAGCTCAC 58.997 52.381 0.00 0.00 0.00 3.51
297 298 1.902508 AGACCGAAGATTTCCAGCTCA 59.097 47.619 0.00 0.00 0.00 4.26
298 299 2.682155 AGACCGAAGATTTCCAGCTC 57.318 50.000 0.00 0.00 0.00 4.09
299 300 4.762289 ATAAGACCGAAGATTTCCAGCT 57.238 40.909 0.00 0.00 0.00 4.24
300 301 4.496507 GCAATAAGACCGAAGATTTCCAGC 60.497 45.833 0.00 0.00 0.00 4.85
301 302 4.878397 AGCAATAAGACCGAAGATTTCCAG 59.122 41.667 0.00 0.00 0.00 3.86
302 303 4.635765 CAGCAATAAGACCGAAGATTTCCA 59.364 41.667 0.00 0.00 0.00 3.53
303 304 4.876107 TCAGCAATAAGACCGAAGATTTCC 59.124 41.667 0.00 0.00 0.00 3.13
304 305 6.610741 ATCAGCAATAAGACCGAAGATTTC 57.389 37.500 0.00 0.00 0.00 2.17
305 306 6.599244 TCAATCAGCAATAAGACCGAAGATTT 59.401 34.615 0.00 0.00 0.00 2.17
306 307 6.115446 TCAATCAGCAATAAGACCGAAGATT 58.885 36.000 0.00 0.00 0.00 2.40
307 308 5.674525 TCAATCAGCAATAAGACCGAAGAT 58.325 37.500 0.00 0.00 0.00 2.40
308 309 5.084818 TCAATCAGCAATAAGACCGAAGA 57.915 39.130 0.00 0.00 0.00 2.87
309 310 5.352569 AGTTCAATCAGCAATAAGACCGAAG 59.647 40.000 0.00 0.00 0.00 3.79
310 311 5.245531 AGTTCAATCAGCAATAAGACCGAA 58.754 37.500 0.00 0.00 0.00 4.30
311 312 4.832248 AGTTCAATCAGCAATAAGACCGA 58.168 39.130 0.00 0.00 0.00 4.69
312 313 5.122239 TGAAGTTCAATCAGCAATAAGACCG 59.878 40.000 2.20 0.00 0.00 4.79
313 314 6.150140 ACTGAAGTTCAATCAGCAATAAGACC 59.850 38.462 7.06 0.00 46.56 3.85
314 315 7.138692 ACTGAAGTTCAATCAGCAATAAGAC 57.861 36.000 7.06 0.00 46.56 3.01
315 316 7.750229 AACTGAAGTTCAATCAGCAATAAGA 57.250 32.000 7.06 0.00 46.56 2.10
316 317 9.897744 TTAAACTGAAGTTCAATCAGCAATAAG 57.102 29.630 7.06 0.00 46.56 1.73
317 318 9.677567 GTTAAACTGAAGTTCAATCAGCAATAA 57.322 29.630 7.06 0.00 46.56 1.40
318 319 8.015087 CGTTAAACTGAAGTTCAATCAGCAATA 58.985 33.333 7.06 0.00 46.56 1.90
319 320 6.857964 CGTTAAACTGAAGTTCAATCAGCAAT 59.142 34.615 7.06 0.00 46.56 3.56
320 321 6.037720 TCGTTAAACTGAAGTTCAATCAGCAA 59.962 34.615 7.06 0.00 46.56 3.91
321 322 5.525745 TCGTTAAACTGAAGTTCAATCAGCA 59.474 36.000 7.06 0.00 46.56 4.41
322 323 5.985781 TCGTTAAACTGAAGTTCAATCAGC 58.014 37.500 7.06 0.00 46.56 4.26
324 325 5.049680 GCCTCGTTAAACTGAAGTTCAATCA 60.050 40.000 7.06 0.00 37.25 2.57
325 326 5.383130 GCCTCGTTAAACTGAAGTTCAATC 58.617 41.667 7.06 0.00 37.25 2.67
326 327 4.215613 GGCCTCGTTAAACTGAAGTTCAAT 59.784 41.667 7.06 0.00 37.25 2.57
327 328 3.562557 GGCCTCGTTAAACTGAAGTTCAA 59.437 43.478 7.06 0.00 37.25 2.69
328 329 3.135994 GGCCTCGTTAAACTGAAGTTCA 58.864 45.455 5.25 5.25 37.25 3.18
329 330 3.400255 AGGCCTCGTTAAACTGAAGTTC 58.600 45.455 0.00 0.00 37.25 3.01
330 331 3.400255 GAGGCCTCGTTAAACTGAAGTT 58.600 45.455 19.06 0.00 40.50 2.66
331 332 2.289506 GGAGGCCTCGTTAAACTGAAGT 60.290 50.000 26.36 0.00 0.00 3.01
332 333 2.028020 AGGAGGCCTCGTTAAACTGAAG 60.028 50.000 26.36 0.00 0.00 3.02
333 334 1.975680 AGGAGGCCTCGTTAAACTGAA 59.024 47.619 26.36 0.00 0.00 3.02
334 335 1.275291 CAGGAGGCCTCGTTAAACTGA 59.725 52.381 25.18 0.00 0.00 3.41
335 336 1.676014 CCAGGAGGCCTCGTTAAACTG 60.676 57.143 25.18 22.87 0.00 3.16
336 337 0.613777 CCAGGAGGCCTCGTTAAACT 59.386 55.000 25.18 12.98 0.00 2.66
337 338 0.323957 ACCAGGAGGCCTCGTTAAAC 59.676 55.000 25.18 10.73 39.06 2.01
338 339 0.611714 GACCAGGAGGCCTCGTTAAA 59.388 55.000 25.18 0.00 39.06 1.52
339 340 1.262640 GGACCAGGAGGCCTCGTTAA 61.263 60.000 25.18 0.00 39.06 2.01
340 341 1.684734 GGACCAGGAGGCCTCGTTA 60.685 63.158 25.18 0.00 39.06 3.18
341 342 3.003763 GGACCAGGAGGCCTCGTT 61.004 66.667 25.18 12.36 39.06 3.85
342 343 4.316823 TGGACCAGGAGGCCTCGT 62.317 66.667 26.36 24.33 39.06 4.18
343 344 3.465403 CTGGACCAGGAGGCCTCG 61.465 72.222 26.36 15.26 39.06 4.63
344 345 3.791586 GCTGGACCAGGAGGCCTC 61.792 72.222 25.59 25.59 39.06 4.70
345 346 4.664267 TGCTGGACCAGGAGGCCT 62.664 66.667 23.09 3.86 39.06 5.19
346 347 2.505364 AATTGCTGGACCAGGAGGCC 62.505 60.000 23.09 6.38 39.06 5.19
347 348 1.000396 AATTGCTGGACCAGGAGGC 60.000 57.895 23.09 10.01 39.06 4.70
348 349 0.394899 GGAATTGCTGGACCAGGAGG 60.395 60.000 23.09 0.00 42.21 4.30
349 350 0.329261 TGGAATTGCTGGACCAGGAG 59.671 55.000 23.09 0.00 32.58 3.69
350 351 0.329261 CTGGAATTGCTGGACCAGGA 59.671 55.000 23.09 18.18 44.04 3.86
351 352 1.318158 GCTGGAATTGCTGGACCAGG 61.318 60.000 23.09 4.77 46.71 4.45
353 354 0.112995 AAGCTGGAATTGCTGGACCA 59.887 50.000 6.01 0.00 41.03 4.02
354 355 0.529378 CAAGCTGGAATTGCTGGACC 59.471 55.000 6.01 0.00 41.03 4.46
355 356 1.200948 GACAAGCTGGAATTGCTGGAC 59.799 52.381 0.00 0.00 41.03 4.02
356 357 1.202915 TGACAAGCTGGAATTGCTGGA 60.203 47.619 0.00 0.00 41.03 3.86
357 358 1.250328 TGACAAGCTGGAATTGCTGG 58.750 50.000 0.00 0.00 41.03 4.85
358 359 3.374220 TTTGACAAGCTGGAATTGCTG 57.626 42.857 0.00 0.00 41.03 4.41
359 360 4.612264 ATTTTGACAAGCTGGAATTGCT 57.388 36.364 0.00 0.00 43.32 3.91
360 361 4.751098 TGAATTTTGACAAGCTGGAATTGC 59.249 37.500 0.00 0.00 0.00 3.56
361 362 5.107220 GCTGAATTTTGACAAGCTGGAATTG 60.107 40.000 0.00 0.00 0.00 2.32
362 363 4.992951 GCTGAATTTTGACAAGCTGGAATT 59.007 37.500 0.00 0.00 0.00 2.17
363 364 4.039488 TGCTGAATTTTGACAAGCTGGAAT 59.961 37.500 0.00 0.00 0.00 3.01
364 365 3.384146 TGCTGAATTTTGACAAGCTGGAA 59.616 39.130 0.00 0.00 0.00 3.53
365 366 2.957680 TGCTGAATTTTGACAAGCTGGA 59.042 40.909 0.00 0.00 0.00 3.86
366 367 3.054878 GTGCTGAATTTTGACAAGCTGG 58.945 45.455 0.00 0.00 0.00 4.85
367 368 3.054878 GGTGCTGAATTTTGACAAGCTG 58.945 45.455 0.00 0.00 0.00 4.24
368 369 2.961062 AGGTGCTGAATTTTGACAAGCT 59.039 40.909 0.00 0.00 0.00 3.74
369 370 3.375782 AGGTGCTGAATTTTGACAAGC 57.624 42.857 0.00 0.00 0.00 4.01
370 371 5.183713 TCCATAGGTGCTGAATTTTGACAAG 59.816 40.000 0.00 0.00 0.00 3.16
371 372 5.076182 TCCATAGGTGCTGAATTTTGACAA 58.924 37.500 0.00 0.00 0.00 3.18
388 389 4.072839 AGATGCAGCATTGTCATCCATAG 58.927 43.478 9.90 0.00 37.98 2.23
402 403 1.538512 TCAGAACAAAGCAGATGCAGC 59.461 47.619 7.68 0.00 45.16 5.25
431 432 3.322230 TGAGAACGTAAACCAAAACGC 57.678 42.857 0.00 0.00 42.74 4.84
434 435 9.146984 CATACTAGATGAGAACGTAAACCAAAA 57.853 33.333 0.00 0.00 0.00 2.44
456 457 5.731591 AGTAAGGTTCAGGCTACAACATAC 58.268 41.667 9.91 10.95 0.00 2.39
478 479 3.334691 TCGGAATGTTGCCTTGACTAAG 58.665 45.455 0.00 0.00 0.00 2.18
479 480 3.007506 TCTCGGAATGTTGCCTTGACTAA 59.992 43.478 0.00 0.00 0.00 2.24
480 481 2.565391 TCTCGGAATGTTGCCTTGACTA 59.435 45.455 0.00 0.00 0.00 2.59
481 482 1.347707 TCTCGGAATGTTGCCTTGACT 59.652 47.619 0.00 0.00 0.00 3.41
513 514 1.489881 CTTGCAAGCCCAAAACGTGC 61.490 55.000 14.65 0.00 41.98 5.34
547 548 4.980805 GGCCCACTCGTGCGACAA 62.981 66.667 0.00 0.00 0.00 3.18
577 578 2.083774 GATTTGATCAACACGCTCCCA 58.916 47.619 7.89 0.00 0.00 4.37
636 637 7.496591 AGCTCTTCTATATATGTCGGCTACTAC 59.503 40.741 0.00 0.00 0.00 2.73
639 640 6.491394 CAGCTCTTCTATATATGTCGGCTAC 58.509 44.000 0.00 0.00 0.00 3.58
641 642 4.142271 GCAGCTCTTCTATATATGTCGGCT 60.142 45.833 0.00 0.00 0.00 5.52
642 643 4.109050 GCAGCTCTTCTATATATGTCGGC 58.891 47.826 0.00 0.00 0.00 5.54
643 644 5.124617 TCAGCAGCTCTTCTATATATGTCGG 59.875 44.000 0.00 0.00 0.00 4.79
644 645 6.027131 GTCAGCAGCTCTTCTATATATGTCG 58.973 44.000 0.00 0.00 0.00 4.35
646 647 6.071447 CCAGTCAGCAGCTCTTCTATATATGT 60.071 42.308 0.00 0.00 0.00 2.29
647 648 6.071447 ACCAGTCAGCAGCTCTTCTATATATG 60.071 42.308 0.00 0.00 0.00 1.78
649 650 5.389520 ACCAGTCAGCAGCTCTTCTATATA 58.610 41.667 0.00 0.00 0.00 0.86
650 651 4.222336 ACCAGTCAGCAGCTCTTCTATAT 58.778 43.478 0.00 0.00 0.00 0.86
651 652 3.636679 ACCAGTCAGCAGCTCTTCTATA 58.363 45.455 0.00 0.00 0.00 1.31
751 757 7.481798 CGTTCATTCCTCACTAAAAACAATAGC 59.518 37.037 0.00 0.00 0.00 2.97
752 758 7.962918 CCGTTCATTCCTCACTAAAAACAATAG 59.037 37.037 0.00 0.00 0.00 1.73
753 759 7.094549 CCCGTTCATTCCTCACTAAAAACAATA 60.095 37.037 0.00 0.00 0.00 1.90
754 760 6.294508 CCCGTTCATTCCTCACTAAAAACAAT 60.295 38.462 0.00 0.00 0.00 2.71
755 761 5.009210 CCCGTTCATTCCTCACTAAAAACAA 59.991 40.000 0.00 0.00 0.00 2.83
757 763 4.615223 GCCCGTTCATTCCTCACTAAAAAC 60.615 45.833 0.00 0.00 0.00 2.43
763 769 0.693049 AAGCCCGTTCATTCCTCACT 59.307 50.000 0.00 0.00 0.00 3.41
764 770 1.200020 CAAAGCCCGTTCATTCCTCAC 59.800 52.381 0.00 0.00 0.00 3.51
765 771 1.533625 CAAAGCCCGTTCATTCCTCA 58.466 50.000 0.00 0.00 0.00 3.86
766 772 0.171231 GCAAAGCCCGTTCATTCCTC 59.829 55.000 0.00 0.00 0.00 3.71
767 773 1.586154 CGCAAAGCCCGTTCATTCCT 61.586 55.000 0.00 0.00 0.00 3.36
768 774 1.154035 CGCAAAGCCCGTTCATTCC 60.154 57.895 0.00 0.00 0.00 3.01
769 775 1.801512 GCGCAAAGCCCGTTCATTC 60.802 57.895 0.30 0.00 40.81 2.67
770 776 2.258286 GCGCAAAGCCCGTTCATT 59.742 55.556 0.30 0.00 40.81 2.57
811 886 1.470996 TTTGCGCTTCCAAGCCCAAT 61.471 50.000 9.73 0.00 45.83 3.16
830 909 2.784347 GCTTTAGCCTTGTCACTCCTT 58.216 47.619 0.00 0.00 34.31 3.36
884 963 1.997256 GCGAGGGGGTAGGAGAGAGA 61.997 65.000 0.00 0.00 0.00 3.10
885 964 1.529713 GCGAGGGGGTAGGAGAGAG 60.530 68.421 0.00 0.00 0.00 3.20
886 965 2.601868 GCGAGGGGGTAGGAGAGA 59.398 66.667 0.00 0.00 0.00 3.10
887 966 2.522193 GGCGAGGGGGTAGGAGAG 60.522 72.222 0.00 0.00 0.00 3.20
888 967 4.517934 CGGCGAGGGGGTAGGAGA 62.518 72.222 0.00 0.00 0.00 3.71
901 980 4.891727 ATAGAACAGGCGCCGGCG 62.892 66.667 43.13 43.13 41.24 6.46
902 981 2.513897 AATAGAACAGGCGCCGGC 60.514 61.111 27.22 19.07 38.90 6.13
903 982 0.876342 GAGAATAGAACAGGCGCCGG 60.876 60.000 25.72 25.72 0.00 6.13
904 983 0.876342 GGAGAATAGAACAGGCGCCG 60.876 60.000 23.20 18.60 0.00 6.46
905 984 0.178068 TGGAGAATAGAACAGGCGCC 59.822 55.000 21.89 21.89 0.00 6.53
906 985 2.024176 TTGGAGAATAGAACAGGCGC 57.976 50.000 0.00 0.00 0.00 6.53
907 986 3.134458 GGATTGGAGAATAGAACAGGCG 58.866 50.000 0.00 0.00 0.00 5.52
908 987 3.481453 GGGATTGGAGAATAGAACAGGC 58.519 50.000 0.00 0.00 0.00 4.85
909 988 3.718956 AGGGGATTGGAGAATAGAACAGG 59.281 47.826 0.00 0.00 0.00 4.00
910 989 4.502259 CGAGGGGATTGGAGAATAGAACAG 60.502 50.000 0.00 0.00 0.00 3.16
911 990 3.388024 CGAGGGGATTGGAGAATAGAACA 59.612 47.826 0.00 0.00 0.00 3.18
912 991 3.804063 GCGAGGGGATTGGAGAATAGAAC 60.804 52.174 0.00 0.00 0.00 3.01
951 1030 1.076727 GTTGGGGTCTTGGGGAAGG 59.923 63.158 0.00 0.00 0.00 3.46
1445 1544 0.249114 GAAGAGGCGCAGGTAGTAGC 60.249 60.000 10.83 0.00 0.00 3.58
1494 1593 4.775236 AGAGGAGATTGTGGTTATGCTTC 58.225 43.478 0.00 0.00 0.00 3.86
1609 1708 1.654954 GCAGTGAGCATCCTTGGCAG 61.655 60.000 0.00 0.00 44.79 4.85
2159 2258 8.877864 TTACCAAATTCATAGACCATTCTTGT 57.122 30.769 0.00 0.00 32.75 3.16
2265 2369 2.820787 AGACTAACAGAGTGGAAGACCG 59.179 50.000 0.00 0.00 39.06 4.79
2305 2592 0.523072 AAGCAATGTAAGCCAGCACG 59.477 50.000 0.00 0.00 0.00 5.34
2327 2614 3.635373 CCATAATGAAGCATTGACAGGCT 59.365 43.478 3.07 0.00 43.46 4.58
2333 2620 2.960384 CCAGGCCATAATGAAGCATTGA 59.040 45.455 5.01 0.00 35.54 2.57
2516 2805 1.535462 ACGAACAAACTAGCATGGCAC 59.465 47.619 0.00 0.00 0.00 5.01
2902 3191 3.270877 ACATCGACAGGTCCAAAATAGC 58.729 45.455 0.00 0.00 0.00 2.97
2908 3197 4.545208 TTATGAACATCGACAGGTCCAA 57.455 40.909 2.62 0.00 0.00 3.53
2949 3238 7.977853 AGAATGGATATTTCATCAAAACTGCAC 59.022 33.333 0.00 0.00 0.00 4.57
2987 3276 9.054922 CACAACATTTAATCCCTTCAAACAAAT 57.945 29.630 0.00 0.00 0.00 2.32
3080 3369 7.234166 AGTTTTGAGATCATTTGTCCCTTCAAT 59.766 33.333 0.00 0.00 0.00 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.