Multiple sequence alignment - TraesCS6D01G019100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G019100 chr6D 100.000 3304 0 0 1 3304 7727471 7730774 0.000000e+00 6102.0
1 TraesCS6D01G019100 chr6D 83.288 736 100 17 968 1680 7901239 7901974 0.000000e+00 656.0
2 TraesCS6D01G019100 chr6D 80.940 745 133 7 1672 2414 7901801 7902538 6.150000e-162 580.0
3 TraesCS6D01G019100 chr6D 91.971 411 32 1 1 410 312144935 312145345 2.860000e-160 575.0
4 TraesCS6D01G019100 chr6D 82.198 646 97 12 1672 2308 7404451 7403815 1.040000e-149 540.0
5 TraesCS6D01G019100 chr6D 80.789 583 85 7 1100 1680 7404835 7404278 6.550000e-117 431.0
6 TraesCS6D01G019100 chr6D 76.289 679 126 23 1672 2336 25018222 25017565 2.460000e-86 329.0
7 TraesCS6D01G019100 chr6D 91.447 152 13 0 671 822 312145347 312145498 3.340000e-50 209.0
8 TraesCS6D01G019100 chr6D 85.632 174 24 1 1672 1845 7728978 7729150 7.280000e-42 182.0
9 TraesCS6D01G019100 chr6D 85.632 174 24 1 1508 1680 7729142 7729315 7.280000e-42 182.0
10 TraesCS6D01G019100 chr6B 90.937 1655 89 16 1672 3304 14340982 14342597 0.000000e+00 2169.0
11 TraesCS6D01G019100 chr6B 90.577 849 52 11 859 1680 14340308 14341155 0.000000e+00 1099.0
12 TraesCS6D01G019100 chr6B 81.729 717 100 16 992 1680 13818923 13818210 1.330000e-158 569.0
13 TraesCS6D01G019100 chr6B 81.211 644 115 5 1672 2312 13818383 13817743 6.320000e-142 514.0
14 TraesCS6D01G019100 chr6B 76.565 751 156 19 1672 2414 14399343 14398605 8.590000e-106 394.0
15 TraesCS6D01G019100 chr6B 74.863 728 163 19 1705 2424 41228581 41227866 2.480000e-81 313.0
16 TraesCS6D01G019100 chr6B 74.177 759 160 21 1672 2424 40657962 40657234 1.940000e-72 283.0
17 TraesCS6D01G019100 chr6B 82.895 228 36 2 2187 2414 40791277 40791053 5.590000e-48 202.0
18 TraesCS6D01G019100 chr6B 83.902 205 30 2 2187 2391 40715840 40715639 3.360000e-45 193.0
19 TraesCS6D01G019100 chr6B 80.000 110 19 3 2638 2745 27057439 27057331 9.830000e-11 78.7
20 TraesCS6D01G019100 chr6B 80.000 110 19 3 2638 2745 178881306 178881198 9.830000e-11 78.7
21 TraesCS6D01G019100 chr2D 98.058 412 8 0 1 412 301750938 301751349 0.000000e+00 717.0
22 TraesCS6D01G019100 chr2D 97.816 412 9 0 1 412 37908884 37908473 0.000000e+00 712.0
23 TraesCS6D01G019100 chr2D 97.386 153 4 0 670 822 37908474 37908322 9.090000e-66 261.0
24 TraesCS6D01G019100 chr2D 95.425 153 7 0 670 822 301751348 301751500 9.160000e-61 244.0
25 TraesCS6D01G019100 chr2D 89.542 153 16 0 671 823 407955833 407955985 9.350000e-46 195.0
26 TraesCS6D01G019100 chr2A 94.903 412 21 0 1 412 3952055 3951644 0.000000e+00 645.0
27 TraesCS6D01G019100 chr2A 92.683 410 29 1 1 410 551710643 551710235 1.020000e-164 590.0
28 TraesCS6D01G019100 chr2A 92.810 153 11 0 670 822 3951645 3951493 4.290000e-54 222.0
29 TraesCS6D01G019100 chr2A 90.972 144 13 0 671 814 551710233 551710090 9.350000e-46 195.0
30 TraesCS6D01G019100 chr7B 92.927 410 29 0 1 410 180690702 180691111 6.100000e-167 597.0
31 TraesCS6D01G019100 chr7B 82.081 692 100 15 963 1638 623951370 623950687 1.330000e-158 569.0
32 TraesCS6D01G019100 chr7B 80.035 571 93 10 965 1526 32348094 32347536 1.430000e-108 403.0
33 TraesCS6D01G019100 chr7B 78.357 633 125 7 1672 2298 623950817 623950191 1.850000e-107 399.0
34 TraesCS6D01G019100 chr7B 90.278 144 14 0 671 814 180691113 180691256 4.350000e-44 189.0
35 TraesCS6D01G019100 chr3D 91.932 409 33 0 2 410 412114992 412115400 1.030000e-159 573.0
36 TraesCS6D01G019100 chr3D 92.000 150 11 1 671 819 412115402 412115551 3.340000e-50 209.0
37 TraesCS6D01G019100 chr5B 91.707 410 34 0 1 410 445510056 445510465 1.330000e-158 569.0
38 TraesCS6D01G019100 chr5B 78.273 695 124 17 996 1672 556795753 556795068 3.940000e-114 422.0
39 TraesCS6D01G019100 chr5B 95.019 261 13 0 411 671 596287579 596287839 8.530000e-111 411.0
40 TraesCS6D01G019100 chr5B 91.946 149 12 0 671 819 445510467 445510615 3.340000e-50 209.0
41 TraesCS6D01G019100 chr7A 81.727 695 105 10 963 1638 657024860 657024169 8.010000e-156 560.0
42 TraesCS6D01G019100 chr7A 93.657 268 16 1 411 678 646560446 646560180 1.850000e-107 399.0
43 TraesCS6D01G019100 chr7A 77.638 635 128 11 1672 2299 657024299 657023672 1.120000e-99 374.0
44 TraesCS6D01G019100 chr6A 80.242 744 140 5 1672 2414 8175492 8176229 1.340000e-153 553.0
45 TraesCS6D01G019100 chr6A 80.932 687 97 17 992 1649 7224722 7224041 2.270000e-141 512.0
46 TraesCS6D01G019100 chr6A 79.891 736 107 23 968 1680 8174948 8175665 4.920000e-138 501.0
47 TraesCS6D01G019100 chr6A 75.549 728 143 28 974 1680 8261997 8261284 3.180000e-85 326.0
48 TraesCS6D01G019100 chr6A 80.909 110 18 3 2638 2745 15912469 15912361 2.110000e-12 84.2
49 TraesCS6D01G019100 chr7D 81.503 692 106 13 963 1638 568371579 568370894 1.730000e-152 549.0
50 TraesCS6D01G019100 chr7D 94.030 268 16 0 413 680 164087469 164087202 1.100000e-109 407.0
51 TraesCS6D01G019100 chr7D 77.551 637 125 13 1672 2299 568371024 568370397 5.210000e-98 368.0
52 TraesCS6D01G019100 chr2B 90.594 404 38 0 1 404 151464494 151464897 1.350000e-148 536.0
53 TraesCS6D01G019100 chr2B 94.677 263 14 0 410 672 247919837 247919575 3.070000e-110 409.0
54 TraesCS6D01G019100 chr2B 94.340 265 14 1 411 675 94326702 94326965 3.970000e-109 405.0
55 TraesCS6D01G019100 chr2B 79.646 113 20 3 2635 2745 315682386 315682497 9.830000e-11 78.7
56 TraesCS6D01G019100 chr1B 82.927 615 39 16 2714 3304 27364066 27363494 8.240000e-136 494.0
57 TraesCS6D01G019100 chr1B 93.680 269 16 1 411 679 4324479 4324746 5.140000e-108 401.0
58 TraesCS6D01G019100 chr1B 78.631 599 109 15 1719 2308 664762181 664762769 2.410000e-101 379.0
59 TraesCS6D01G019100 chr1A 88.064 377 45 0 34 410 20809666 20810042 6.500000e-122 448.0
60 TraesCS6D01G019100 chr1A 87.003 377 49 0 34 410 20792408 20792784 3.050000e-115 425.0
61 TraesCS6D01G019100 chr1A 78.793 646 119 14 1672 2308 573206649 573207285 5.100000e-113 418.0
62 TraesCS6D01G019100 chr1D 78.605 645 122 12 1672 2308 477166209 477166845 2.370000e-111 412.0
63 TraesCS6D01G019100 chr1D 73.430 621 133 18 1043 1653 490008487 490007889 1.550000e-48 204.0
64 TraesCS6D01G019100 chrUn 93.633 267 17 0 406 672 199053241 199052975 1.850000e-107 399.0
65 TraesCS6D01G019100 chrUn 93.633 267 17 0 406 672 381236039 381236305 1.850000e-107 399.0
66 TraesCS6D01G019100 chrUn 79.091 110 20 3 2638 2745 62724743 62724635 4.570000e-09 73.1
67 TraesCS6D01G019100 chr4B 92.226 283 20 2 411 692 566979181 566978900 1.850000e-107 399.0
68 TraesCS6D01G019100 chr4B 78.814 118 21 4 2631 2745 666952170 666952286 3.540000e-10 76.8
69 TraesCS6D01G019100 chr4A 80.000 110 19 3 2638 2745 615609013 615608905 9.830000e-11 78.7
70 TraesCS6D01G019100 chr3A 79.091 110 20 3 2638 2745 84998428 84998320 4.570000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G019100 chr6D 7727471 7730774 3303 False 2155.333333 6102 90.421333 1 3304 3 chr6D.!!$F1 3303
1 TraesCS6D01G019100 chr6D 7901239 7902538 1299 False 618.000000 656 82.114000 968 2414 2 chr6D.!!$F2 1446
2 TraesCS6D01G019100 chr6D 7403815 7404835 1020 True 485.500000 540 81.493500 1100 2308 2 chr6D.!!$R2 1208
3 TraesCS6D01G019100 chr6D 312144935 312145498 563 False 392.000000 575 91.709000 1 822 2 chr6D.!!$F3 821
4 TraesCS6D01G019100 chr6D 25017565 25018222 657 True 329.000000 329 76.289000 1672 2336 1 chr6D.!!$R1 664
5 TraesCS6D01G019100 chr6B 14340308 14342597 2289 False 1634.000000 2169 90.757000 859 3304 2 chr6B.!!$F1 2445
6 TraesCS6D01G019100 chr6B 13817743 13818923 1180 True 541.500000 569 81.470000 992 2312 2 chr6B.!!$R8 1320
7 TraesCS6D01G019100 chr6B 14398605 14399343 738 True 394.000000 394 76.565000 1672 2414 1 chr6B.!!$R1 742
8 TraesCS6D01G019100 chr6B 41227866 41228581 715 True 313.000000 313 74.863000 1705 2424 1 chr6B.!!$R6 719
9 TraesCS6D01G019100 chr6B 40657234 40657962 728 True 283.000000 283 74.177000 1672 2424 1 chr6B.!!$R3 752
10 TraesCS6D01G019100 chr2D 37908322 37908884 562 True 486.500000 712 97.601000 1 822 2 chr2D.!!$R1 821
11 TraesCS6D01G019100 chr2D 301750938 301751500 562 False 480.500000 717 96.741500 1 822 2 chr2D.!!$F2 821
12 TraesCS6D01G019100 chr2A 3951493 3952055 562 True 433.500000 645 93.856500 1 822 2 chr2A.!!$R1 821
13 TraesCS6D01G019100 chr2A 551710090 551710643 553 True 392.500000 590 91.827500 1 814 2 chr2A.!!$R2 813
14 TraesCS6D01G019100 chr7B 623950191 623951370 1179 True 484.000000 569 80.219000 963 2298 2 chr7B.!!$R2 1335
15 TraesCS6D01G019100 chr7B 32347536 32348094 558 True 403.000000 403 80.035000 965 1526 1 chr7B.!!$R1 561
16 TraesCS6D01G019100 chr7B 180690702 180691256 554 False 393.000000 597 91.602500 1 814 2 chr7B.!!$F1 813
17 TraesCS6D01G019100 chr3D 412114992 412115551 559 False 391.000000 573 91.966000 2 819 2 chr3D.!!$F1 817
18 TraesCS6D01G019100 chr5B 556795068 556795753 685 True 422.000000 422 78.273000 996 1672 1 chr5B.!!$R1 676
19 TraesCS6D01G019100 chr5B 445510056 445510615 559 False 389.000000 569 91.826500 1 819 2 chr5B.!!$F2 818
20 TraesCS6D01G019100 chr7A 657023672 657024860 1188 True 467.000000 560 79.682500 963 2299 2 chr7A.!!$R2 1336
21 TraesCS6D01G019100 chr6A 8174948 8176229 1281 False 527.000000 553 80.066500 968 2414 2 chr6A.!!$F1 1446
22 TraesCS6D01G019100 chr6A 7224041 7224722 681 True 512.000000 512 80.932000 992 1649 1 chr6A.!!$R1 657
23 TraesCS6D01G019100 chr6A 8261284 8261997 713 True 326.000000 326 75.549000 974 1680 1 chr6A.!!$R2 706
24 TraesCS6D01G019100 chr7D 568370397 568371579 1182 True 458.500000 549 79.527000 963 2299 2 chr7D.!!$R2 1336
25 TraesCS6D01G019100 chr1B 27363494 27364066 572 True 494.000000 494 82.927000 2714 3304 1 chr1B.!!$R1 590
26 TraesCS6D01G019100 chr1B 664762181 664762769 588 False 379.000000 379 78.631000 1719 2308 1 chr1B.!!$F2 589
27 TraesCS6D01G019100 chr1A 573206649 573207285 636 False 418.000000 418 78.793000 1672 2308 1 chr1A.!!$F3 636
28 TraesCS6D01G019100 chr1D 477166209 477166845 636 False 412.000000 412 78.605000 1672 2308 1 chr1D.!!$F1 636
29 TraesCS6D01G019100 chr1D 490007889 490008487 598 True 204.000000 204 73.430000 1043 1653 1 chr1D.!!$R1 610

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
935 943 0.029567 CGCGTTTGTACCAGGCAAAA 59.97 50.0 0.0 0.0 37.54 2.44 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2621 2673 0.25077 GAAACCAGGACAGGGTGGTC 60.251 60.0 0.0 0.0 46.82 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
52 53 1.122632 TTAACAGGTGGTGCCGAGGA 61.123 55.000 0.00 0.00 43.70 3.71
85 86 1.352352 CCCACCCAGTTGAGATGACTT 59.648 52.381 0.00 0.00 0.00 3.01
410 412 2.739943 TGCAGACACTCATAGGCTACT 58.260 47.619 0.00 0.00 0.00 2.57
411 413 3.898482 TGCAGACACTCATAGGCTACTA 58.102 45.455 0.00 0.00 0.00 1.82
412 414 3.632604 TGCAGACACTCATAGGCTACTAC 59.367 47.826 0.00 0.00 30.59 2.73
413 415 3.886505 GCAGACACTCATAGGCTACTACT 59.113 47.826 0.00 0.00 30.59 2.57
414 416 4.023536 GCAGACACTCATAGGCTACTACTC 60.024 50.000 0.00 0.00 30.59 2.59
415 417 4.517453 CAGACACTCATAGGCTACTACTCC 59.483 50.000 0.00 0.00 30.59 3.85
416 418 3.822167 GACACTCATAGGCTACTACTCCC 59.178 52.174 0.00 0.00 30.59 4.30
417 419 3.464080 ACACTCATAGGCTACTACTCCCT 59.536 47.826 0.00 0.00 30.59 4.20
418 420 4.076394 CACTCATAGGCTACTACTCCCTC 58.924 52.174 0.00 0.00 30.59 4.30
419 421 3.074836 ACTCATAGGCTACTACTCCCTCC 59.925 52.174 0.00 0.00 30.59 4.30
420 422 3.061369 TCATAGGCTACTACTCCCTCCA 58.939 50.000 0.00 0.00 30.59 3.86
421 423 3.663136 TCATAGGCTACTACTCCCTCCAT 59.337 47.826 0.00 0.00 30.59 3.41
422 424 4.108124 TCATAGGCTACTACTCCCTCCATT 59.892 45.833 0.00 0.00 30.59 3.16
423 425 3.423058 AGGCTACTACTCCCTCCATTT 57.577 47.619 0.00 0.00 0.00 2.32
424 426 3.310193 AGGCTACTACTCCCTCCATTTC 58.690 50.000 0.00 0.00 0.00 2.17
425 427 3.039011 GGCTACTACTCCCTCCATTTCA 58.961 50.000 0.00 0.00 0.00 2.69
426 428 3.070302 GGCTACTACTCCCTCCATTTCAG 59.930 52.174 0.00 0.00 0.00 3.02
427 429 3.961408 GCTACTACTCCCTCCATTTCAGA 59.039 47.826 0.00 0.00 0.00 3.27
428 430 4.406003 GCTACTACTCCCTCCATTTCAGAA 59.594 45.833 0.00 0.00 0.00 3.02
429 431 5.071115 GCTACTACTCCCTCCATTTCAGAAT 59.929 44.000 0.00 0.00 0.00 2.40
430 432 6.267928 GCTACTACTCCCTCCATTTCAGAATA 59.732 42.308 0.00 0.00 0.00 1.75
431 433 7.038658 GCTACTACTCCCTCCATTTCAGAATAT 60.039 40.741 0.00 0.00 0.00 1.28
432 434 9.535170 CTACTACTCCCTCCATTTCAGAATATA 57.465 37.037 0.00 0.00 0.00 0.86
433 435 8.798975 ACTACTCCCTCCATTTCAGAATATAA 57.201 34.615 0.00 0.00 0.00 0.98
434 436 8.652290 ACTACTCCCTCCATTTCAGAATATAAC 58.348 37.037 0.00 0.00 0.00 1.89
435 437 6.525629 ACTCCCTCCATTTCAGAATATAACG 58.474 40.000 0.00 0.00 0.00 3.18
436 438 6.099845 ACTCCCTCCATTTCAGAATATAACGT 59.900 38.462 0.00 0.00 0.00 3.99
437 439 6.288294 TCCCTCCATTTCAGAATATAACGTG 58.712 40.000 0.00 0.00 0.00 4.49
438 440 6.055588 CCCTCCATTTCAGAATATAACGTGT 58.944 40.000 0.00 0.00 0.00 4.49
439 441 7.070198 TCCCTCCATTTCAGAATATAACGTGTA 59.930 37.037 0.00 0.00 0.00 2.90
440 442 7.878127 CCCTCCATTTCAGAATATAACGTGTAT 59.122 37.037 0.00 0.00 0.00 2.29
441 443 9.273016 CCTCCATTTCAGAATATAACGTGTATT 57.727 33.333 6.25 6.25 0.00 1.89
443 445 9.051679 TCCATTTCAGAATATAACGTGTATTGG 57.948 33.333 10.23 5.71 0.00 3.16
444 446 8.836413 CCATTTCAGAATATAACGTGTATTGGT 58.164 33.333 10.23 0.00 0.00 3.67
448 450 8.428186 TCAGAATATAACGTGTATTGGTTTCC 57.572 34.615 10.23 0.00 0.00 3.13
449 451 8.041919 TCAGAATATAACGTGTATTGGTTTCCA 58.958 33.333 10.23 0.00 0.00 3.53
450 452 8.836413 CAGAATATAACGTGTATTGGTTTCCAT 58.164 33.333 10.23 0.00 31.53 3.41
451 453 8.836413 AGAATATAACGTGTATTGGTTTCCATG 58.164 33.333 10.23 0.00 31.53 3.66
452 454 3.569250 AACGTGTATTGGTTTCCATGC 57.431 42.857 0.00 0.00 31.53 4.06
453 455 2.509569 ACGTGTATTGGTTTCCATGCA 58.490 42.857 0.00 0.00 31.53 3.96
454 456 2.887783 ACGTGTATTGGTTTCCATGCAA 59.112 40.909 0.00 0.00 31.53 4.08
455 457 3.057596 ACGTGTATTGGTTTCCATGCAAG 60.058 43.478 0.00 0.00 31.53 4.01
456 458 3.057596 CGTGTATTGGTTTCCATGCAAGT 60.058 43.478 0.00 0.00 31.53 3.16
457 459 4.485163 GTGTATTGGTTTCCATGCAAGTC 58.515 43.478 0.00 0.00 31.53 3.01
458 460 4.022416 GTGTATTGGTTTCCATGCAAGTCA 60.022 41.667 0.00 0.00 31.53 3.41
459 461 4.586421 TGTATTGGTTTCCATGCAAGTCAA 59.414 37.500 0.00 0.00 31.53 3.18
460 462 3.451141 TTGGTTTCCATGCAAGTCAAC 57.549 42.857 0.00 0.00 31.53 3.18
461 463 1.686052 TGGTTTCCATGCAAGTCAACC 59.314 47.619 10.96 10.96 35.25 3.77
462 464 1.686052 GGTTTCCATGCAAGTCAACCA 59.314 47.619 12.38 0.00 34.87 3.67
463 465 2.299867 GGTTTCCATGCAAGTCAACCAT 59.700 45.455 12.38 0.00 34.87 3.55
464 466 3.244181 GGTTTCCATGCAAGTCAACCATT 60.244 43.478 12.38 0.00 34.87 3.16
465 467 4.379652 GTTTCCATGCAAGTCAACCATTT 58.620 39.130 0.00 0.00 0.00 2.32
466 468 3.663995 TCCATGCAAGTCAACCATTTG 57.336 42.857 0.00 0.00 0.00 2.32
467 469 3.229293 TCCATGCAAGTCAACCATTTGA 58.771 40.909 0.00 0.00 39.55 2.69
468 470 3.640498 TCCATGCAAGTCAACCATTTGAA 59.360 39.130 0.00 0.00 43.52 2.69
469 471 4.100653 TCCATGCAAGTCAACCATTTGAAA 59.899 37.500 0.00 0.00 43.52 2.69
470 472 4.449743 CCATGCAAGTCAACCATTTGAAAG 59.550 41.667 0.00 0.00 43.52 2.62
471 473 4.734398 TGCAAGTCAACCATTTGAAAGT 57.266 36.364 0.00 0.00 43.52 2.66
472 474 5.083533 TGCAAGTCAACCATTTGAAAGTT 57.916 34.783 0.00 0.00 43.52 2.66
473 475 5.486526 TGCAAGTCAACCATTTGAAAGTTT 58.513 33.333 0.00 0.00 43.52 2.66
474 476 5.350914 TGCAAGTCAACCATTTGAAAGTTTG 59.649 36.000 0.00 0.00 43.52 2.93
475 477 5.580297 GCAAGTCAACCATTTGAAAGTTTGA 59.420 36.000 0.00 0.00 43.52 2.69
476 478 6.455513 GCAAGTCAACCATTTGAAAGTTTGAC 60.456 38.462 15.64 15.64 43.52 3.18
477 479 5.660460 AGTCAACCATTTGAAAGTTTGACC 58.340 37.500 18.01 7.40 43.52 4.02
478 480 5.186797 AGTCAACCATTTGAAAGTTTGACCA 59.813 36.000 18.01 0.00 43.52 4.02
479 481 5.872070 GTCAACCATTTGAAAGTTTGACCAA 59.128 36.000 13.75 0.00 43.52 3.67
480 482 6.035975 GTCAACCATTTGAAAGTTTGACCAAG 59.964 38.462 13.75 0.00 43.52 3.61
481 483 5.930837 ACCATTTGAAAGTTTGACCAAGA 57.069 34.783 0.00 0.00 0.00 3.02
482 484 6.484364 ACCATTTGAAAGTTTGACCAAGAT 57.516 33.333 0.00 0.00 0.00 2.40
483 485 6.888105 ACCATTTGAAAGTTTGACCAAGATT 58.112 32.000 0.00 0.00 0.00 2.40
484 486 8.017418 ACCATTTGAAAGTTTGACCAAGATTA 57.983 30.769 0.00 0.00 0.00 1.75
485 487 8.650490 ACCATTTGAAAGTTTGACCAAGATTAT 58.350 29.630 0.00 0.00 0.00 1.28
486 488 9.492973 CCATTTGAAAGTTTGACCAAGATTATT 57.507 29.630 0.00 0.00 0.00 1.40
490 492 9.528018 TTGAAAGTTTGACCAAGATTATTGAAC 57.472 29.630 0.00 0.00 0.00 3.18
491 493 7.860373 TGAAAGTTTGACCAAGATTATTGAACG 59.140 33.333 0.00 0.00 0.00 3.95
492 494 7.504924 AAGTTTGACCAAGATTATTGAACGA 57.495 32.000 0.00 0.00 0.00 3.85
493 495 7.504924 AGTTTGACCAAGATTATTGAACGAA 57.495 32.000 0.00 0.00 0.00 3.85
494 496 7.936584 AGTTTGACCAAGATTATTGAACGAAA 58.063 30.769 0.00 0.00 0.00 3.46
495 497 8.576442 AGTTTGACCAAGATTATTGAACGAAAT 58.424 29.630 0.00 0.00 0.00 2.17
496 498 9.834628 GTTTGACCAAGATTATTGAACGAAATA 57.165 29.630 0.00 0.00 0.00 1.40
498 500 9.443323 TTGACCAAGATTATTGAACGAAATAGA 57.557 29.630 0.00 0.00 0.00 1.98
499 501 9.443323 TGACCAAGATTATTGAACGAAATAGAA 57.557 29.630 0.00 0.00 0.00 2.10
507 509 9.722056 ATTATTGAACGAAATAGAAACATCTGC 57.278 29.630 0.00 0.00 0.00 4.26
508 510 6.552859 TTGAACGAAATAGAAACATCTGCA 57.447 33.333 0.00 0.00 0.00 4.41
509 511 6.552859 TGAACGAAATAGAAACATCTGCAA 57.447 33.333 0.00 0.00 0.00 4.08
510 512 7.144722 TGAACGAAATAGAAACATCTGCAAT 57.855 32.000 0.00 0.00 0.00 3.56
511 513 8.262715 TGAACGAAATAGAAACATCTGCAATA 57.737 30.769 0.00 0.00 0.00 1.90
512 514 8.175069 TGAACGAAATAGAAACATCTGCAATAC 58.825 33.333 0.00 0.00 0.00 1.89
513 515 7.016361 ACGAAATAGAAACATCTGCAATACC 57.984 36.000 0.00 0.00 0.00 2.73
514 516 6.823689 ACGAAATAGAAACATCTGCAATACCT 59.176 34.615 0.00 0.00 0.00 3.08
515 517 7.985184 ACGAAATAGAAACATCTGCAATACCTA 59.015 33.333 0.00 0.00 0.00 3.08
516 518 8.826710 CGAAATAGAAACATCTGCAATACCTAA 58.173 33.333 0.00 0.00 0.00 2.69
553 555 7.539712 GAAAGTACCTTTCATGATCGATCAA 57.460 36.000 30.41 13.79 46.23 2.57
554 556 7.921786 AAAGTACCTTTCATGATCGATCAAA 57.078 32.000 30.41 18.86 40.69 2.69
555 557 8.511604 AAAGTACCTTTCATGATCGATCAAAT 57.488 30.769 30.41 13.79 40.69 2.32
556 558 7.488187 AGTACCTTTCATGATCGATCAAATG 57.512 36.000 30.41 24.02 40.69 2.32
557 559 7.275183 AGTACCTTTCATGATCGATCAAATGA 58.725 34.615 30.41 25.74 40.69 2.57
558 560 7.935755 AGTACCTTTCATGATCGATCAAATGAT 59.064 33.333 30.41 17.09 40.69 2.45
559 561 7.578310 ACCTTTCATGATCGATCAAATGATT 57.422 32.000 30.41 11.51 40.69 2.57
560 562 8.004087 ACCTTTCATGATCGATCAAATGATTT 57.996 30.769 30.41 10.76 40.69 2.17
561 563 9.123902 ACCTTTCATGATCGATCAAATGATTTA 57.876 29.630 30.41 13.56 40.69 1.40
562 564 9.955208 CCTTTCATGATCGATCAAATGATTTAA 57.045 29.630 30.41 18.93 40.69 1.52
614 616 7.589574 TTTCTAAAAACTTGGTCAAACTTGC 57.410 32.000 0.00 0.00 0.00 4.01
615 617 6.274157 TCTAAAAACTTGGTCAAACTTGCA 57.726 33.333 0.00 0.00 0.00 4.08
616 618 6.096695 TCTAAAAACTTGGTCAAACTTGCAC 58.903 36.000 0.00 0.00 0.00 4.57
617 619 4.535526 AAAACTTGGTCAAACTTGCACT 57.464 36.364 0.00 0.00 0.00 4.40
618 620 3.782889 AACTTGGTCAAACTTGCACTC 57.217 42.857 0.00 0.00 0.00 3.51
619 621 1.670811 ACTTGGTCAAACTTGCACTCG 59.329 47.619 0.00 0.00 0.00 4.18
620 622 1.670811 CTTGGTCAAACTTGCACTCGT 59.329 47.619 0.00 0.00 0.00 4.18
621 623 1.745232 TGGTCAAACTTGCACTCGTT 58.255 45.000 0.00 0.00 0.00 3.85
622 624 2.088423 TGGTCAAACTTGCACTCGTTT 58.912 42.857 0.00 0.00 33.92 3.60
623 625 2.159448 TGGTCAAACTTGCACTCGTTTG 60.159 45.455 20.85 20.85 46.90 2.93
628 630 4.434713 AAACTTGCACTCGTTTGACTTT 57.565 36.364 7.04 0.00 32.55 2.66
629 631 4.434713 AACTTGCACTCGTTTGACTTTT 57.565 36.364 0.00 0.00 0.00 2.27
630 632 3.758300 ACTTGCACTCGTTTGACTTTTG 58.242 40.909 0.00 0.00 0.00 2.44
631 633 3.438781 ACTTGCACTCGTTTGACTTTTGA 59.561 39.130 0.00 0.00 0.00 2.69
632 634 4.083003 ACTTGCACTCGTTTGACTTTTGAA 60.083 37.500 0.00 0.00 0.00 2.69
633 635 4.427096 TGCACTCGTTTGACTTTTGAAA 57.573 36.364 0.00 0.00 0.00 2.69
634 636 4.799678 TGCACTCGTTTGACTTTTGAAAA 58.200 34.783 0.00 0.00 0.00 2.29
635 637 5.223382 TGCACTCGTTTGACTTTTGAAAAA 58.777 33.333 0.00 0.00 0.00 1.94
668 670 9.379791 ACACTTTATATAAAGGAACGGAAAGAG 57.620 33.333 29.82 10.30 45.23 2.85
831 834 4.784177 GGAACGGTGATAATTTTAGGGGA 58.216 43.478 0.00 0.00 0.00 4.81
832 835 5.195185 GGAACGGTGATAATTTTAGGGGAA 58.805 41.667 0.00 0.00 0.00 3.97
833 836 5.653330 GGAACGGTGATAATTTTAGGGGAAA 59.347 40.000 0.00 0.00 0.00 3.13
834 837 6.405065 GGAACGGTGATAATTTTAGGGGAAAC 60.405 42.308 0.00 0.00 0.00 2.78
850 853 4.107363 GGAAACCAGTAGTTACTCGAGG 57.893 50.000 18.41 0.00 37.88 4.63
851 854 3.509740 GAAACCAGTAGTTACTCGAGGC 58.490 50.000 18.41 6.59 37.88 4.70
852 855 2.510928 ACCAGTAGTTACTCGAGGCT 57.489 50.000 18.41 13.70 33.46 4.58
853 856 3.641434 ACCAGTAGTTACTCGAGGCTA 57.359 47.619 18.41 12.70 33.46 3.93
854 857 3.543665 ACCAGTAGTTACTCGAGGCTAG 58.456 50.000 18.41 7.13 33.46 3.42
855 858 2.291190 CCAGTAGTTACTCGAGGCTAGC 59.709 54.545 18.41 6.04 33.46 3.42
856 859 3.207778 CAGTAGTTACTCGAGGCTAGCT 58.792 50.000 18.41 10.63 33.46 3.32
857 860 3.249080 CAGTAGTTACTCGAGGCTAGCTC 59.751 52.174 18.41 9.21 33.46 4.09
935 943 0.029567 CGCGTTTGTACCAGGCAAAA 59.970 50.000 0.00 0.00 37.54 2.44
950 958 1.373570 CAAAATCTGGACGAGGCTCC 58.626 55.000 9.32 0.00 0.00 4.70
1062 1095 2.765807 CCCGCCACCTCTCTCCAT 60.766 66.667 0.00 0.00 0.00 3.41
1357 1403 3.358076 CTCGGACTGTCGCCTTCCC 62.358 68.421 1.07 0.00 0.00 3.97
1495 1544 3.213206 TCAAGCACAACCACAATCTCT 57.787 42.857 0.00 0.00 0.00 3.10
1543 1592 3.426568 GGAACGTCCTGCTGCTGC 61.427 66.667 8.89 8.89 40.20 5.25
1560 1609 2.353958 CAGGAGTGCATGCCAGGT 59.646 61.111 16.68 0.00 0.00 4.00
1561 1610 2.044555 CAGGAGTGCATGCCAGGTG 61.045 63.158 16.68 2.42 0.00 4.00
1562 1611 3.446570 GGAGTGCATGCCAGGTGC 61.447 66.667 16.68 0.00 42.81 5.01
1563 1612 3.446570 GAGTGCATGCCAGGTGCC 61.447 66.667 16.68 0.00 41.83 5.01
1573 1622 3.803082 CAGGTGCCCGCGATGTTG 61.803 66.667 8.23 0.00 0.00 3.33
1578 1627 4.481112 GCCCGCGATGTTGGCAAG 62.481 66.667 16.98 0.00 44.70 4.01
1579 1628 4.481112 CCCGCGATGTTGGCAAGC 62.481 66.667 8.23 0.00 0.00 4.01
1580 1629 3.434319 CCGCGATGTTGGCAAGCT 61.434 61.111 8.23 0.00 32.63 3.74
1581 1630 2.202388 CGCGATGTTGGCAAGCTG 60.202 61.111 0.00 0.00 32.63 4.24
1582 1631 2.180017 GCGATGTTGGCAAGCTGG 59.820 61.111 0.00 0.00 32.27 4.85
1583 1632 2.180017 CGATGTTGGCAAGCTGGC 59.820 61.111 3.79 3.79 44.03 4.85
1592 1641 3.721793 GCAAGCTGGCCATCTCTAT 57.278 52.632 10.08 0.00 0.00 1.98
1593 1642 1.236628 GCAAGCTGGCCATCTCTATG 58.763 55.000 10.08 5.98 0.00 2.23
1594 1643 1.236628 CAAGCTGGCCATCTCTATGC 58.763 55.000 10.08 6.13 0.00 3.14
1595 1644 0.110104 AAGCTGGCCATCTCTATGCC 59.890 55.000 10.08 0.00 32.83 4.40
1596 1645 1.058428 AGCTGGCCATCTCTATGCCA 61.058 55.000 5.51 2.11 37.12 4.92
1597 1646 0.179009 GCTGGCCATCTCTATGCCAA 60.179 55.000 5.51 0.00 38.20 4.52
1598 1647 1.893544 CTGGCCATCTCTATGCCAAG 58.106 55.000 5.51 0.00 38.20 3.61
1599 1648 0.475475 TGGCCATCTCTATGCCAAGG 59.525 55.000 0.00 0.00 36.77 3.61
1600 1649 0.767375 GGCCATCTCTATGCCAAGGA 59.233 55.000 0.00 0.00 32.62 3.36
1601 1650 1.353694 GGCCATCTCTATGCCAAGGAT 59.646 52.381 0.00 0.00 32.62 3.24
1602 1651 2.434428 GCCATCTCTATGCCAAGGATG 58.566 52.381 0.00 0.00 35.10 3.51
1603 1652 2.434428 CCATCTCTATGCCAAGGATGC 58.566 52.381 0.00 0.00 34.30 3.91
1604 1653 2.040012 CCATCTCTATGCCAAGGATGCT 59.960 50.000 0.00 0.00 34.30 3.79
1605 1654 3.336468 CATCTCTATGCCAAGGATGCTC 58.664 50.000 0.00 0.00 0.00 4.26
1606 1655 2.401568 TCTCTATGCCAAGGATGCTCA 58.598 47.619 0.00 0.00 0.00 4.26
1607 1656 2.103771 TCTCTATGCCAAGGATGCTCAC 59.896 50.000 0.00 0.00 0.00 3.51
1608 1657 1.141657 TCTATGCCAAGGATGCTCACC 59.858 52.381 0.00 0.00 0.00 4.02
1609 1658 0.179048 TATGCCAAGGATGCTCACCG 60.179 55.000 0.00 0.00 0.00 4.94
1610 1659 3.512516 GCCAAGGATGCTCACCGC 61.513 66.667 0.00 0.00 39.77 5.68
1611 1660 2.825836 CCAAGGATGCTCACCGCC 60.826 66.667 0.00 0.00 38.05 6.13
1612 1661 2.046023 CAAGGATGCTCACCGCCA 60.046 61.111 0.00 0.00 38.05 5.69
1613 1662 1.675310 CAAGGATGCTCACCGCCAA 60.675 57.895 0.00 0.00 38.05 4.52
1614 1663 1.033746 CAAGGATGCTCACCGCCAAT 61.034 55.000 0.00 0.00 38.05 3.16
1615 1664 1.033746 AAGGATGCTCACCGCCAATG 61.034 55.000 0.00 0.00 38.05 2.82
1616 1665 2.410469 GATGCTCACCGCCAATGC 59.590 61.111 0.00 0.00 38.05 3.56
1626 1675 2.715624 GCCAATGCGGACCGAATC 59.284 61.111 20.50 0.00 36.56 2.52
1627 1676 2.834618 GCCAATGCGGACCGAATCC 61.835 63.158 20.50 0.00 45.20 3.01
1638 1687 2.967076 CGAATCCGGGCGATGGTG 60.967 66.667 0.00 0.00 0.00 4.17
1639 1688 2.189521 GAATCCGGGCGATGGTGT 59.810 61.111 0.00 0.00 0.00 4.16
1640 1689 1.887707 GAATCCGGGCGATGGTGTC 60.888 63.158 0.00 0.00 0.00 3.67
1641 1690 2.587322 GAATCCGGGCGATGGTGTCA 62.587 60.000 0.00 0.00 0.00 3.58
1642 1691 1.983119 AATCCGGGCGATGGTGTCAT 61.983 55.000 0.00 0.00 36.09 3.06
1643 1692 2.665008 ATCCGGGCGATGGTGTCATG 62.665 60.000 0.00 0.00 32.98 3.07
1644 1693 3.576356 CGGGCGATGGTGTCATGC 61.576 66.667 0.00 0.00 32.98 4.06
1645 1694 3.576356 GGGCGATGGTGTCATGCG 61.576 66.667 0.00 0.00 32.98 4.73
1646 1695 4.241999 GGCGATGGTGTCATGCGC 62.242 66.667 0.00 0.00 42.92 6.09
1647 1696 4.580044 GCGATGGTGTCATGCGCG 62.580 66.667 0.00 0.00 38.77 6.86
1648 1697 3.928769 CGATGGTGTCATGCGCGG 61.929 66.667 8.83 0.00 32.98 6.46
1649 1698 2.511373 GATGGTGTCATGCGCGGA 60.511 61.111 8.83 5.00 32.98 5.54
1650 1699 2.046411 ATGGTGTCATGCGCGGAA 60.046 55.556 3.18 0.00 31.34 4.30
1651 1700 2.040213 GATGGTGTCATGCGCGGAAG 62.040 60.000 3.18 0.00 32.98 3.46
1652 1701 3.499737 GGTGTCATGCGCGGAAGG 61.500 66.667 3.18 0.00 0.00 3.46
1653 1702 4.166011 GTGTCATGCGCGGAAGGC 62.166 66.667 3.18 0.83 38.69 4.35
1654 1703 4.695993 TGTCATGCGCGGAAGGCA 62.696 61.111 5.92 5.92 45.71 4.75
1662 1711 3.499737 GCGGAAGGCATCGGTGTG 61.500 66.667 0.00 0.00 42.87 3.82
1663 1712 3.499737 CGGAAGGCATCGGTGTGC 61.500 66.667 0.00 0.00 44.31 4.57
1690 1739 0.803768 CTCGAGATGGTGGTCAAGCG 60.804 60.000 6.58 0.00 0.00 4.68
1691 1740 1.811266 CGAGATGGTGGTCAAGCGG 60.811 63.158 0.00 0.00 0.00 5.52
1694 1743 0.321653 AGATGGTGGTCAAGCGGAAC 60.322 55.000 0.00 0.00 0.00 3.62
2090 2140 3.810310 ATGCTCAGTTACAGCCTAGAC 57.190 47.619 0.00 0.00 35.89 2.59
2113 2164 2.125512 GCTCAGGCCACGGTACTG 60.126 66.667 5.01 0.00 0.00 2.74
2120 2171 2.664436 GCCACGGTACTGCGTTGTC 61.664 63.158 0.23 0.00 0.00 3.18
2131 2182 2.609459 ACTGCGTTGTCAAGTTTCTCAG 59.391 45.455 0.00 0.00 0.00 3.35
2336 2388 5.109210 GGGCTATGAAAATTGGTAAACTGC 58.891 41.667 0.00 0.00 0.00 4.40
2376 2428 4.379918 GGTTTTCATTCTGAGTAGCAAGCC 60.380 45.833 0.00 0.00 0.00 4.35
2414 2466 9.541143 TTTTTGTGTTCTTTTCCTAATTGGATC 57.459 29.630 0.00 0.00 45.68 3.36
2438 2490 8.429493 TCATGTCTTTTATCTGCTATTGACTG 57.571 34.615 0.00 0.00 0.00 3.51
2445 2497 6.985188 TTATCTGCTATTGACTGTTGAACC 57.015 37.500 0.00 0.00 0.00 3.62
2509 2561 5.220912 CGCCTGCAATCTCTGAAAATGATAA 60.221 40.000 0.00 0.00 0.00 1.75
2551 2603 5.404366 TGTTTCTGACTTCCGTTTAAGATCG 59.596 40.000 0.00 0.00 0.00 3.69
2598 2650 5.901552 TCAATTTTCTGTTGAAACCAGGAC 58.098 37.500 0.00 0.00 41.34 3.85
2621 2673 2.867975 CAGCAAACCAGAAAGCAAAAGG 59.132 45.455 0.00 0.00 0.00 3.11
2626 2678 2.031870 ACCAGAAAGCAAAAGGACCAC 58.968 47.619 0.00 0.00 0.00 4.16
2627 2679 1.341209 CCAGAAAGCAAAAGGACCACC 59.659 52.381 0.00 0.00 0.00 4.61
2695 2747 3.732212 TGAATTCTATCAGCATGTCCCG 58.268 45.455 7.05 0.00 37.40 5.14
2756 2810 8.896320 TCAGTTAGTACTAAAATTGCAGTTCA 57.104 30.769 16.82 0.00 31.96 3.18
2818 2872 6.072893 GGTGTATGTTCGCCTTTTTCTTCTTA 60.073 38.462 0.00 0.00 35.37 2.10
2821 2875 3.566742 TGTTCGCCTTTTTCTTCTTACCC 59.433 43.478 0.00 0.00 0.00 3.69
2827 2881 5.581874 CGCCTTTTTCTTCTTACCCGTATTA 59.418 40.000 0.00 0.00 0.00 0.98
2889 2943 5.841810 TGACATTTGCTGGGAAACTTTTAG 58.158 37.500 0.00 0.00 0.00 1.85
2939 2993 9.722056 GACTAAAGCATGATCGTAAAATGAATT 57.278 29.630 0.00 0.00 0.00 2.17
2943 2997 9.722056 AAAGCATGATCGTAAAATGAATTAGTC 57.278 29.630 0.00 0.00 0.00 2.59
2944 2998 7.865707 AGCATGATCGTAAAATGAATTAGTCC 58.134 34.615 0.00 0.00 0.00 3.85
2945 2999 7.716998 AGCATGATCGTAAAATGAATTAGTCCT 59.283 33.333 0.00 0.00 0.00 3.85
2946 3000 8.988934 GCATGATCGTAAAATGAATTAGTCCTA 58.011 33.333 0.00 0.00 0.00 2.94
2991 3045 6.522054 TCGTGAGAACTAAACCAAAGAAGAT 58.478 36.000 0.00 0.00 37.03 2.40
2993 3047 6.423905 CGTGAGAACTAAACCAAAGAAGATGA 59.576 38.462 0.00 0.00 0.00 2.92
3041 3095 9.364989 CTCTCTACTATTCAGTTTGAAAAGAGG 57.635 37.037 15.73 8.84 40.12 3.69
3042 3096 9.090103 TCTCTACTATTCAGTTTGAAAAGAGGA 57.910 33.333 15.73 4.84 40.12 3.71
3050 3104 5.404366 TCAGTTTGAAAAGAGGAATACGACG 59.596 40.000 0.00 0.00 0.00 5.12
3084 3138 2.154462 AGGAACTGCAAATCCAGAACG 58.846 47.619 17.25 0.00 37.18 3.95
3089 3143 1.200716 CTGCAAATCCAGAACGTGCAT 59.799 47.619 0.00 0.00 43.73 3.96
3094 3148 2.479566 ATCCAGAACGTGCATTGAGT 57.520 45.000 0.00 0.00 0.00 3.41
3098 3152 2.349817 CCAGAACGTGCATTGAGTTGAC 60.350 50.000 0.00 0.00 0.00 3.18
3124 3199 9.138062 CATACAATTATGTTAGTTGCAGCAAAA 57.862 29.630 10.11 0.00 41.05 2.44
3161 3236 8.354711 TGCCACCATATCAAGTTAAAATACAA 57.645 30.769 0.00 0.00 0.00 2.41
3195 3270 5.012458 ACATGTGGAGATTTGTTCAGAGAGA 59.988 40.000 0.00 0.00 0.00 3.10
3203 3278 8.037758 GGAGATTTGTTCAGAGAGACTAAATGA 58.962 37.037 0.00 0.00 0.00 2.57
3249 3324 3.668447 ACACTGAACCTGATACTTGCAG 58.332 45.455 0.00 0.00 0.00 4.41
3271 3346 7.124298 TGCAGGATAGATAACTTTCACACTAGT 59.876 37.037 0.00 0.00 0.00 2.57
3282 3358 7.535489 ACTTTCACACTAGTACACTTGTTTC 57.465 36.000 0.00 0.00 29.82 2.78
3293 3369 3.793559 ACACTTGTTTCGCACTAACTCT 58.206 40.909 0.00 0.00 0.00 3.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
52 53 1.298667 GGTGGGATACAAGTGGCGT 59.701 57.895 0.00 0.00 39.74 5.68
85 86 9.747898 TTTCAGGCCTATTGAAAAATCTAAGTA 57.252 29.630 14.45 0.00 40.50 2.24
186 187 5.743636 TTCAATGGAAGGAAATTGGAAGG 57.256 39.130 0.00 0.00 35.04 3.46
410 412 7.289317 ACGTTATATTCTGAAATGGAGGGAGTA 59.711 37.037 0.00 0.00 0.00 2.59
411 413 6.099845 ACGTTATATTCTGAAATGGAGGGAGT 59.900 38.462 0.00 0.00 0.00 3.85
412 414 6.425114 CACGTTATATTCTGAAATGGAGGGAG 59.575 42.308 0.00 0.00 0.00 4.30
413 415 6.126883 ACACGTTATATTCTGAAATGGAGGGA 60.127 38.462 0.00 0.00 0.00 4.20
414 416 6.055588 ACACGTTATATTCTGAAATGGAGGG 58.944 40.000 0.00 0.00 0.00 4.30
415 417 8.833231 ATACACGTTATATTCTGAAATGGAGG 57.167 34.615 0.00 0.00 0.00 4.30
417 419 9.051679 CCAATACACGTTATATTCTGAAATGGA 57.948 33.333 0.00 0.00 0.00 3.41
418 420 8.836413 ACCAATACACGTTATATTCTGAAATGG 58.164 33.333 0.00 0.00 0.00 3.16
422 424 8.885722 GGAAACCAATACACGTTATATTCTGAA 58.114 33.333 0.00 0.00 0.00 3.02
423 425 8.041919 TGGAAACCAATACACGTTATATTCTGA 58.958 33.333 0.00 0.00 0.00 3.27
424 426 8.203937 TGGAAACCAATACACGTTATATTCTG 57.796 34.615 0.00 0.00 0.00 3.02
425 427 8.836413 CATGGAAACCAATACACGTTATATTCT 58.164 33.333 0.00 0.00 36.95 2.40
426 428 7.589954 GCATGGAAACCAATACACGTTATATTC 59.410 37.037 0.00 0.00 36.95 1.75
427 429 7.067615 TGCATGGAAACCAATACACGTTATATT 59.932 33.333 0.00 0.00 36.95 1.28
428 430 6.544197 TGCATGGAAACCAATACACGTTATAT 59.456 34.615 0.00 0.00 36.95 0.86
429 431 5.880887 TGCATGGAAACCAATACACGTTATA 59.119 36.000 0.00 0.00 36.95 0.98
430 432 4.702612 TGCATGGAAACCAATACACGTTAT 59.297 37.500 0.00 0.00 36.95 1.89
431 433 4.072839 TGCATGGAAACCAATACACGTTA 58.927 39.130 0.00 0.00 36.95 3.18
432 434 2.887783 TGCATGGAAACCAATACACGTT 59.112 40.909 0.00 0.00 36.95 3.99
433 435 2.509569 TGCATGGAAACCAATACACGT 58.490 42.857 0.00 0.00 36.95 4.49
434 436 3.057596 ACTTGCATGGAAACCAATACACG 60.058 43.478 0.00 0.00 36.95 4.49
435 437 4.022416 TGACTTGCATGGAAACCAATACAC 60.022 41.667 0.00 0.00 36.95 2.90
436 438 4.148079 TGACTTGCATGGAAACCAATACA 58.852 39.130 0.00 0.00 36.95 2.29
437 439 4.782019 TGACTTGCATGGAAACCAATAC 57.218 40.909 0.00 0.00 36.95 1.89
438 440 4.021544 GGTTGACTTGCATGGAAACCAATA 60.022 41.667 22.95 0.00 36.95 1.90
439 441 3.244181 GGTTGACTTGCATGGAAACCAAT 60.244 43.478 22.95 0.00 36.95 3.16
440 442 2.102252 GGTTGACTTGCATGGAAACCAA 59.898 45.455 22.95 10.45 36.95 3.67
441 443 1.686052 GGTTGACTTGCATGGAAACCA 59.314 47.619 22.95 5.49 37.57 3.67
442 444 1.686052 TGGTTGACTTGCATGGAAACC 59.314 47.619 21.91 21.91 38.02 3.27
443 445 3.665745 ATGGTTGACTTGCATGGAAAC 57.334 42.857 0.00 7.63 0.00 2.78
444 446 4.100653 TCAAATGGTTGACTTGCATGGAAA 59.899 37.500 0.00 0.00 38.88 3.13
445 447 3.640498 TCAAATGGTTGACTTGCATGGAA 59.360 39.130 0.00 0.00 38.88 3.53
446 448 3.229293 TCAAATGGTTGACTTGCATGGA 58.771 40.909 4.44 0.00 38.88 3.41
447 449 3.663995 TCAAATGGTTGACTTGCATGG 57.336 42.857 4.44 0.00 38.88 3.66
448 450 5.051816 ACTTTCAAATGGTTGACTTGCATG 58.948 37.500 0.00 0.00 43.52 4.06
449 451 5.280654 ACTTTCAAATGGTTGACTTGCAT 57.719 34.783 0.00 0.00 43.52 3.96
450 452 4.734398 ACTTTCAAATGGTTGACTTGCA 57.266 36.364 0.00 0.00 43.52 4.08
451 453 5.580297 TCAAACTTTCAAATGGTTGACTTGC 59.420 36.000 5.32 0.00 43.52 4.01
456 458 5.667539 TGGTCAAACTTTCAAATGGTTGA 57.332 34.783 5.32 5.32 42.12 3.18
457 459 6.105333 TCTTGGTCAAACTTTCAAATGGTTG 58.895 36.000 1.14 1.14 33.47 3.77
458 460 6.293004 TCTTGGTCAAACTTTCAAATGGTT 57.707 33.333 0.00 0.00 0.00 3.67
459 461 5.930837 TCTTGGTCAAACTTTCAAATGGT 57.069 34.783 0.00 0.00 0.00 3.55
460 462 9.492973 AATAATCTTGGTCAAACTTTCAAATGG 57.507 29.630 0.00 0.00 0.00 3.16
464 466 9.528018 GTTCAATAATCTTGGTCAAACTTTCAA 57.472 29.630 0.00 0.00 0.00 2.69
465 467 7.860373 CGTTCAATAATCTTGGTCAAACTTTCA 59.140 33.333 0.00 0.00 0.00 2.69
466 468 8.073768 TCGTTCAATAATCTTGGTCAAACTTTC 58.926 33.333 0.00 0.00 0.00 2.62
467 469 7.936584 TCGTTCAATAATCTTGGTCAAACTTT 58.063 30.769 0.00 0.00 0.00 2.66
468 470 7.504924 TCGTTCAATAATCTTGGTCAAACTT 57.495 32.000 0.00 0.00 0.00 2.66
469 471 7.504924 TTCGTTCAATAATCTTGGTCAAACT 57.495 32.000 0.00 0.00 0.00 2.66
470 472 8.742554 ATTTCGTTCAATAATCTTGGTCAAAC 57.257 30.769 0.00 0.00 0.00 2.93
472 474 9.443323 TCTATTTCGTTCAATAATCTTGGTCAA 57.557 29.630 0.00 0.00 0.00 3.18
473 475 9.443323 TTCTATTTCGTTCAATAATCTTGGTCA 57.557 29.630 0.00 0.00 0.00 4.02
481 483 9.722056 GCAGATGTTTCTATTTCGTTCAATAAT 57.278 29.630 0.00 0.00 0.00 1.28
482 484 8.726068 TGCAGATGTTTCTATTTCGTTCAATAA 58.274 29.630 0.00 0.00 0.00 1.40
483 485 8.262715 TGCAGATGTTTCTATTTCGTTCAATA 57.737 30.769 0.00 0.00 0.00 1.90
484 486 7.144722 TGCAGATGTTTCTATTTCGTTCAAT 57.855 32.000 0.00 0.00 0.00 2.57
485 487 6.552859 TGCAGATGTTTCTATTTCGTTCAA 57.447 33.333 0.00 0.00 0.00 2.69
486 488 6.552859 TTGCAGATGTTTCTATTTCGTTCA 57.447 33.333 0.00 0.00 0.00 3.18
487 489 7.640240 GGTATTGCAGATGTTTCTATTTCGTTC 59.360 37.037 0.00 0.00 0.00 3.95
488 490 7.336931 AGGTATTGCAGATGTTTCTATTTCGTT 59.663 33.333 0.00 0.00 0.00 3.85
489 491 6.823689 AGGTATTGCAGATGTTTCTATTTCGT 59.176 34.615 0.00 0.00 0.00 3.85
490 492 7.251704 AGGTATTGCAGATGTTTCTATTTCG 57.748 36.000 0.00 0.00 0.00 3.46
531 533 7.770433 TCATTTGATCGATCATGAAAGGTACTT 59.230 33.333 27.75 1.96 43.92 2.24
532 534 7.275183 TCATTTGATCGATCATGAAAGGTACT 58.725 34.615 27.75 2.92 37.04 2.73
533 535 7.482654 TCATTTGATCGATCATGAAAGGTAC 57.517 36.000 27.75 0.00 36.56 3.34
534 536 8.681486 AATCATTTGATCGATCATGAAAGGTA 57.319 30.769 26.96 10.98 36.56 3.08
535 537 7.578310 AATCATTTGATCGATCATGAAAGGT 57.422 32.000 26.96 13.34 36.56 3.50
536 538 9.955208 TTAAATCATTTGATCGATCATGAAAGG 57.045 29.630 26.96 20.62 36.56 3.11
588 590 8.499967 GCAAGTTTGACCAAGTTTTTAGAAAAA 58.500 29.630 0.00 0.00 35.67 1.94
589 591 7.657761 TGCAAGTTTGACCAAGTTTTTAGAAAA 59.342 29.630 0.00 0.00 0.00 2.29
590 592 7.117092 GTGCAAGTTTGACCAAGTTTTTAGAAA 59.883 33.333 0.00 0.00 0.00 2.52
591 593 6.588373 GTGCAAGTTTGACCAAGTTTTTAGAA 59.412 34.615 0.00 0.00 0.00 2.10
592 594 6.071616 AGTGCAAGTTTGACCAAGTTTTTAGA 60.072 34.615 0.00 0.00 0.00 2.10
593 595 6.099341 AGTGCAAGTTTGACCAAGTTTTTAG 58.901 36.000 0.00 0.00 0.00 1.85
594 596 6.031751 AGTGCAAGTTTGACCAAGTTTTTA 57.968 33.333 0.00 0.00 0.00 1.52
595 597 4.893608 AGTGCAAGTTTGACCAAGTTTTT 58.106 34.783 0.00 0.00 0.00 1.94
596 598 4.494484 GAGTGCAAGTTTGACCAAGTTTT 58.506 39.130 0.00 0.00 0.00 2.43
597 599 3.427503 CGAGTGCAAGTTTGACCAAGTTT 60.428 43.478 0.00 0.00 0.00 2.66
598 600 2.097466 CGAGTGCAAGTTTGACCAAGTT 59.903 45.455 0.00 0.00 0.00 2.66
599 601 1.670811 CGAGTGCAAGTTTGACCAAGT 59.329 47.619 0.00 0.00 0.00 3.16
600 602 1.670811 ACGAGTGCAAGTTTGACCAAG 59.329 47.619 0.00 0.00 0.00 3.61
601 603 1.745232 ACGAGTGCAAGTTTGACCAA 58.255 45.000 0.00 0.00 0.00 3.67
602 604 1.745232 AACGAGTGCAAGTTTGACCA 58.255 45.000 0.00 0.00 0.00 4.02
603 605 2.844122 AAACGAGTGCAAGTTTGACC 57.156 45.000 13.25 0.00 38.90 4.02
607 609 4.434713 AAAGTCAAACGAGTGCAAGTTT 57.565 36.364 9.52 9.52 40.74 2.66
608 610 4.083003 TCAAAAGTCAAACGAGTGCAAGTT 60.083 37.500 0.00 0.00 0.00 2.66
609 611 3.438781 TCAAAAGTCAAACGAGTGCAAGT 59.561 39.130 0.00 0.00 0.00 3.16
610 612 4.014847 TCAAAAGTCAAACGAGTGCAAG 57.985 40.909 0.00 0.00 0.00 4.01
611 613 4.427096 TTCAAAAGTCAAACGAGTGCAA 57.573 36.364 0.00 0.00 0.00 4.08
612 614 4.427096 TTTCAAAAGTCAAACGAGTGCA 57.573 36.364 0.00 0.00 0.00 4.57
613 615 5.755330 TTTTTCAAAAGTCAAACGAGTGC 57.245 34.783 0.00 0.00 0.00 4.40
642 644 9.379791 CTCTTTCCGTTCCTTTATATAAAGTGT 57.620 33.333 26.18 0.00 40.73 3.55
643 645 9.379791 ACTCTTTCCGTTCCTTTATATAAAGTG 57.620 33.333 26.18 19.46 40.73 3.16
654 656 9.930693 GATAATATCATACTCTTTCCGTTCCTT 57.069 33.333 0.00 0.00 0.00 3.36
655 657 9.090103 TGATAATATCATACTCTTTCCGTTCCT 57.910 33.333 0.00 0.00 33.59 3.36
656 658 9.360093 CTGATAATATCATACTCTTTCCGTTCC 57.640 37.037 3.12 0.00 38.85 3.62
657 659 9.915629 ACTGATAATATCATACTCTTTCCGTTC 57.084 33.333 3.12 0.00 38.85 3.95
658 660 9.698309 CACTGATAATATCATACTCTTTCCGTT 57.302 33.333 3.12 0.00 38.85 4.44
659 661 9.078990 TCACTGATAATATCATACTCTTTCCGT 57.921 33.333 3.12 0.00 38.85 4.69
667 669 9.144747 GCGTTTGATCACTGATAATATCATACT 57.855 33.333 3.12 0.00 38.85 2.12
668 670 8.383619 GGCGTTTGATCACTGATAATATCATAC 58.616 37.037 3.12 0.00 38.85 2.39
755 758 1.887707 GCCTCCAAGGTTATCGCCG 60.888 63.158 0.00 0.00 37.80 6.46
814 817 5.955959 ACTGGTTTCCCCTAAAATTATCACC 59.044 40.000 0.00 0.00 0.00 4.02
822 825 6.518875 CGAGTAACTACTGGTTTCCCCTAAAA 60.519 42.308 0.00 0.00 39.17 1.52
823 826 5.047092 CGAGTAACTACTGGTTTCCCCTAAA 60.047 44.000 0.00 0.00 39.17 1.85
824 827 4.463891 CGAGTAACTACTGGTTTCCCCTAA 59.536 45.833 0.00 0.00 39.17 2.69
825 828 4.019174 CGAGTAACTACTGGTTTCCCCTA 58.981 47.826 0.00 0.00 39.17 3.53
826 829 2.830321 CGAGTAACTACTGGTTTCCCCT 59.170 50.000 0.00 0.00 39.17 4.79
827 830 2.827921 TCGAGTAACTACTGGTTTCCCC 59.172 50.000 0.00 0.00 39.17 4.81
828 831 3.119209 CCTCGAGTAACTACTGGTTTCCC 60.119 52.174 12.31 0.00 39.17 3.97
829 832 3.675502 GCCTCGAGTAACTACTGGTTTCC 60.676 52.174 12.31 0.00 39.17 3.13
830 833 3.193056 AGCCTCGAGTAACTACTGGTTTC 59.807 47.826 12.31 0.00 39.17 2.78
831 834 3.163467 AGCCTCGAGTAACTACTGGTTT 58.837 45.455 12.31 0.00 39.17 3.27
832 835 2.805194 AGCCTCGAGTAACTACTGGTT 58.195 47.619 12.31 0.00 41.54 3.67
833 836 2.510928 AGCCTCGAGTAACTACTGGT 57.489 50.000 12.31 0.00 36.50 4.00
834 837 2.291190 GCTAGCCTCGAGTAACTACTGG 59.709 54.545 12.31 2.29 36.50 4.00
835 838 3.207778 AGCTAGCCTCGAGTAACTACTG 58.792 50.000 12.13 1.33 36.50 2.74
836 839 3.118334 TGAGCTAGCCTCGAGTAACTACT 60.118 47.826 12.13 9.52 43.82 2.57
837 840 3.002553 GTGAGCTAGCCTCGAGTAACTAC 59.997 52.174 12.13 5.56 43.82 2.73
838 841 3.204526 GTGAGCTAGCCTCGAGTAACTA 58.795 50.000 12.13 9.01 43.82 2.24
839 842 2.018515 GTGAGCTAGCCTCGAGTAACT 58.981 52.381 12.13 8.30 43.82 2.24
840 843 1.065851 GGTGAGCTAGCCTCGAGTAAC 59.934 57.143 12.13 0.12 43.82 2.50
841 844 1.340697 TGGTGAGCTAGCCTCGAGTAA 60.341 52.381 12.13 0.00 43.82 2.24
842 845 0.255033 TGGTGAGCTAGCCTCGAGTA 59.745 55.000 12.13 0.00 43.82 2.59
843 846 1.000771 TGGTGAGCTAGCCTCGAGT 60.001 57.895 12.13 0.00 43.82 4.18
844 847 1.315981 TGTGGTGAGCTAGCCTCGAG 61.316 60.000 12.13 5.13 43.82 4.04
845 848 0.898326 TTGTGGTGAGCTAGCCTCGA 60.898 55.000 12.13 0.00 43.82 4.04
846 849 0.037326 TTTGTGGTGAGCTAGCCTCG 60.037 55.000 12.13 0.00 43.82 4.63
847 850 1.443802 GTTTGTGGTGAGCTAGCCTC 58.556 55.000 12.13 9.07 41.15 4.70
848 851 0.320771 CGTTTGTGGTGAGCTAGCCT 60.321 55.000 12.13 0.00 0.00 4.58
849 852 0.320421 TCGTTTGTGGTGAGCTAGCC 60.320 55.000 12.13 3.49 0.00 3.93
850 853 1.071605 CTCGTTTGTGGTGAGCTAGC 58.928 55.000 6.62 6.62 0.00 3.42
851 854 2.288213 TGACTCGTTTGTGGTGAGCTAG 60.288 50.000 0.00 0.00 32.98 3.42
852 855 1.684450 TGACTCGTTTGTGGTGAGCTA 59.316 47.619 0.00 0.00 32.98 3.32
853 856 0.464036 TGACTCGTTTGTGGTGAGCT 59.536 50.000 0.00 0.00 32.98 4.09
854 857 0.582005 GTGACTCGTTTGTGGTGAGC 59.418 55.000 0.00 0.00 32.98 4.26
855 858 2.128035 GAGTGACTCGTTTGTGGTGAG 58.872 52.381 0.00 0.00 35.85 3.51
856 859 1.754803 AGAGTGACTCGTTTGTGGTGA 59.245 47.619 6.99 0.00 35.36 4.02
857 860 2.225068 AGAGTGACTCGTTTGTGGTG 57.775 50.000 6.99 0.00 35.36 4.17
935 943 4.268720 GAGGAGCCTCGTCCAGAT 57.731 61.111 2.98 0.00 39.34 2.90
950 958 1.586564 GGAACGATGGCGAGACGAG 60.587 63.158 5.29 0.00 41.64 4.18
1114 1159 0.811915 CAGGTGGAGACGAGGTAGTG 59.188 60.000 0.00 0.00 0.00 2.74
1357 1403 3.013990 GACGAGTCGCGCGATCTG 61.014 66.667 37.03 27.76 46.04 2.90
1495 1544 0.884514 CTCTCGAGGCTGTGTGAGAA 59.115 55.000 13.56 0.00 37.06 2.87
1542 1591 3.138798 CCTGGCATGCACTCCTGC 61.139 66.667 21.36 1.25 44.52 4.85
1543 1592 2.044555 CACCTGGCATGCACTCCTG 61.045 63.158 21.36 5.83 0.00 3.86
1544 1593 2.353958 CACCTGGCATGCACTCCT 59.646 61.111 21.36 0.00 0.00 3.69
1545 1594 3.446570 GCACCTGGCATGCACTCC 61.447 66.667 21.36 1.89 42.88 3.85
1562 1611 4.481112 GCTTGCCAACATCGCGGG 62.481 66.667 6.13 0.00 0.00 6.13
1563 1612 3.434319 AGCTTGCCAACATCGCGG 61.434 61.111 6.13 0.00 0.00 6.46
1564 1613 2.202388 CAGCTTGCCAACATCGCG 60.202 61.111 0.00 0.00 0.00 5.87
1565 1614 2.180017 CCAGCTTGCCAACATCGC 59.820 61.111 0.00 0.00 0.00 4.58
1566 1615 2.180017 GCCAGCTTGCCAACATCG 59.820 61.111 0.00 0.00 0.00 3.84
1574 1623 1.236628 CATAGAGATGGCCAGCTTGC 58.763 55.000 27.06 13.70 0.00 4.01
1575 1624 1.236628 GCATAGAGATGGCCAGCTTG 58.763 55.000 27.06 20.47 33.26 4.01
1576 1625 3.721793 GCATAGAGATGGCCAGCTT 57.278 52.632 27.06 16.99 33.26 3.74
1583 1632 2.040012 AGCATCCTTGGCATAGAGATGG 59.960 50.000 14.44 0.00 35.86 3.51
1584 1633 3.244457 TGAGCATCCTTGGCATAGAGATG 60.244 47.826 10.46 10.46 37.87 2.90
1585 1634 2.977580 TGAGCATCCTTGGCATAGAGAT 59.022 45.455 0.00 0.00 0.00 2.75
1586 1635 2.103771 GTGAGCATCCTTGGCATAGAGA 59.896 50.000 0.00 0.00 0.00 3.10
1587 1636 2.492012 GTGAGCATCCTTGGCATAGAG 58.508 52.381 0.00 0.00 0.00 2.43
1588 1637 1.141657 GGTGAGCATCCTTGGCATAGA 59.858 52.381 0.00 0.00 0.00 1.98
1589 1638 1.602311 GGTGAGCATCCTTGGCATAG 58.398 55.000 0.00 0.00 0.00 2.23
1590 1639 0.179048 CGGTGAGCATCCTTGGCATA 60.179 55.000 0.00 0.00 0.00 3.14
1591 1640 1.452651 CGGTGAGCATCCTTGGCAT 60.453 57.895 0.00 0.00 0.00 4.40
1592 1641 2.046023 CGGTGAGCATCCTTGGCA 60.046 61.111 0.00 0.00 0.00 4.92
1609 1658 2.715624 GATTCGGTCCGCATTGGC 59.284 61.111 6.34 0.00 37.80 4.52
1610 1659 3.420943 GGATTCGGTCCGCATTGG 58.579 61.111 6.34 0.00 37.23 3.16
1621 1670 2.967076 CACCATCGCCCGGATTCG 60.967 66.667 0.73 3.31 31.28 3.34
1622 1671 1.887707 GACACCATCGCCCGGATTC 60.888 63.158 0.73 0.00 31.28 2.52
1623 1672 1.983119 ATGACACCATCGCCCGGATT 61.983 55.000 0.73 0.00 31.28 3.01
1624 1673 2.443394 ATGACACCATCGCCCGGAT 61.443 57.895 0.73 0.00 35.09 4.18
1625 1674 3.080765 ATGACACCATCGCCCGGA 61.081 61.111 0.73 0.00 0.00 5.14
1626 1675 2.896854 CATGACACCATCGCCCGG 60.897 66.667 0.00 0.00 0.00 5.73
1627 1676 3.576356 GCATGACACCATCGCCCG 61.576 66.667 0.00 0.00 0.00 6.13
1628 1677 3.576356 CGCATGACACCATCGCCC 61.576 66.667 0.00 0.00 0.00 6.13
1629 1678 4.241999 GCGCATGACACCATCGCC 62.242 66.667 0.30 0.00 40.26 5.54
1630 1679 4.580044 CGCGCATGACACCATCGC 62.580 66.667 8.75 0.00 41.43 4.58
1631 1680 3.928769 CCGCGCATGACACCATCG 61.929 66.667 8.75 0.00 0.00 3.84
1632 1681 2.040213 CTTCCGCGCATGACACCATC 62.040 60.000 8.75 0.00 0.00 3.51
1633 1682 2.046411 TTCCGCGCATGACACCAT 60.046 55.556 8.75 0.00 0.00 3.55
1634 1683 2.741985 CTTCCGCGCATGACACCA 60.742 61.111 8.75 0.00 0.00 4.17
1635 1684 3.499737 CCTTCCGCGCATGACACC 61.500 66.667 8.75 0.00 0.00 4.16
1636 1685 4.166011 GCCTTCCGCGCATGACAC 62.166 66.667 8.75 0.00 0.00 3.67
1637 1686 3.974835 ATGCCTTCCGCGCATGACA 62.975 57.895 8.75 0.00 45.11 3.58
1638 1687 3.173390 GATGCCTTCCGCGCATGAC 62.173 63.158 8.75 0.00 46.76 3.06
1639 1688 2.896854 GATGCCTTCCGCGCATGA 60.897 61.111 8.75 0.00 46.76 3.07
1640 1689 4.303603 CGATGCCTTCCGCGCATG 62.304 66.667 8.75 0.00 46.76 4.06
1645 1694 3.499737 CACACCGATGCCTTCCGC 61.500 66.667 0.00 0.00 38.31 5.54
1646 1695 3.499737 GCACACCGATGCCTTCCG 61.500 66.667 0.00 0.00 39.86 4.30
1667 1716 4.148825 ACCACCATCTCGAGCCGC 62.149 66.667 7.81 0.00 0.00 6.53
1668 1717 2.105128 GACCACCATCTCGAGCCG 59.895 66.667 7.81 0.22 0.00 5.52
1669 1718 0.460987 CTTGACCACCATCTCGAGCC 60.461 60.000 7.81 0.00 0.00 4.70
1670 1719 1.086634 GCTTGACCACCATCTCGAGC 61.087 60.000 7.81 0.00 36.88 5.03
1678 1727 2.280524 CGTTCCGCTTGACCACCA 60.281 61.111 0.00 0.00 0.00 4.17
1690 1739 3.723348 GCAGCAACCCGACGTTCC 61.723 66.667 0.00 0.00 29.93 3.62
1691 1740 4.072088 CGCAGCAACCCGACGTTC 62.072 66.667 0.00 0.00 29.93 3.95
1947 1996 1.808531 GCCTTGGACACAGCAATGCA 61.809 55.000 8.35 0.00 0.00 3.96
2113 2164 1.264288 CCCTGAGAAACTTGACAACGC 59.736 52.381 0.00 0.00 0.00 4.84
2120 2171 5.990120 ATCCATTTTCCCTGAGAAACTTG 57.010 39.130 0.00 0.00 44.20 3.16
2131 2182 2.169144 CCCTTGAGCAATCCATTTTCCC 59.831 50.000 0.00 0.00 0.00 3.97
2336 2388 1.153823 CCTTGTCGAGCACCCTACG 60.154 63.158 0.00 0.00 0.00 3.51
2376 2428 9.471084 AAAAGAACACAAAAATAGGAATTACCG 57.529 29.630 0.00 0.00 44.74 4.02
2408 2460 8.843262 CAATAGCAGATAAAAGACATGATCCAA 58.157 33.333 0.00 0.00 0.00 3.53
2414 2466 8.206325 ACAGTCAATAGCAGATAAAAGACATG 57.794 34.615 0.00 0.00 0.00 3.21
2445 2497 4.806775 TGAATAATACATCGACACGTTGGG 59.193 41.667 0.00 0.00 31.83 4.12
2451 2503 9.388346 CTTCTCTACTGAATAATACATCGACAC 57.612 37.037 0.00 0.00 0.00 3.67
2509 2561 8.328758 TCAGAAACACAAATATATTCCAGGACT 58.671 33.333 0.00 0.00 0.00 3.85
2551 2603 1.194218 CCCCCACATCCAATTTCCAC 58.806 55.000 0.00 0.00 0.00 4.02
2598 2650 0.752054 TTGCTTTCTGGTTTGCTGGG 59.248 50.000 0.00 0.00 0.00 4.45
2621 2673 0.250770 GAAACCAGGACAGGGTGGTC 60.251 60.000 0.00 0.00 46.82 4.02
2626 2678 3.449746 TTAATGGAAACCAGGACAGGG 57.550 47.619 0.00 0.00 36.75 4.45
2627 2679 5.069781 TGTTTTTAATGGAAACCAGGACAGG 59.930 40.000 0.00 0.00 36.75 4.00
2695 2747 7.506296 ACAAAGAAGACGATGAAACAAAAAC 57.494 32.000 0.00 0.00 0.00 2.43
2744 2796 9.630098 CATAGTCTAAACATTGAACTGCAATTT 57.370 29.630 0.00 0.00 44.68 1.82
2745 2797 7.756722 GCATAGTCTAAACATTGAACTGCAATT 59.243 33.333 0.00 0.00 44.68 2.32
2747 2799 6.430925 AGCATAGTCTAAACATTGAACTGCAA 59.569 34.615 0.00 0.00 41.53 4.08
2749 2801 6.428385 AGCATAGTCTAAACATTGAACTGC 57.572 37.500 0.00 0.00 0.00 4.40
2799 2853 3.566742 GGGTAAGAAGAAAAAGGCGAACA 59.433 43.478 0.00 0.00 0.00 3.18
2818 2872 7.920682 GCAAATCAATCTTTGAATAATACGGGT 59.079 33.333 0.97 0.00 43.95 5.28
2827 2881 7.935210 AGGAACAAAGCAAATCAATCTTTGAAT 59.065 29.630 17.46 8.21 45.61 2.57
2889 2943 3.181516 CGGATAAGTCAGCTTTTCACAGC 60.182 47.826 0.00 0.00 40.44 4.40
2905 2959 5.009710 ACGATCATGCTTTAGTCTCGGATAA 59.990 40.000 0.00 0.00 0.00 1.75
2939 2993 9.877222 TTAGGACAGATACAAATGATAGGACTA 57.123 33.333 0.00 0.00 0.00 2.59
2940 2994 8.783660 TTAGGACAGATACAAATGATAGGACT 57.216 34.615 0.00 0.00 0.00 3.85
2943 2997 9.144747 CGATTTAGGACAGATACAAATGATAGG 57.855 37.037 0.00 0.00 0.00 2.57
2944 2998 9.698309 ACGATTTAGGACAGATACAAATGATAG 57.302 33.333 0.00 0.00 0.00 2.08
2945 2999 9.476202 CACGATTTAGGACAGATACAAATGATA 57.524 33.333 0.00 0.00 0.00 2.15
2946 3000 8.204160 TCACGATTTAGGACAGATACAAATGAT 58.796 33.333 0.00 0.00 0.00 2.45
2947 3001 7.552459 TCACGATTTAGGACAGATACAAATGA 58.448 34.615 0.00 0.00 0.00 2.57
2948 3002 7.706607 TCTCACGATTTAGGACAGATACAAATG 59.293 37.037 0.00 0.00 0.00 2.32
2949 3003 7.782049 TCTCACGATTTAGGACAGATACAAAT 58.218 34.615 0.00 0.00 0.00 2.32
2950 3004 7.165460 TCTCACGATTTAGGACAGATACAAA 57.835 36.000 0.00 0.00 0.00 2.83
2951 3005 6.769134 TCTCACGATTTAGGACAGATACAA 57.231 37.500 0.00 0.00 0.00 2.41
2952 3006 6.377429 AGTTCTCACGATTTAGGACAGATACA 59.623 38.462 0.00 0.00 0.00 2.29
2953 3007 6.797454 AGTTCTCACGATTTAGGACAGATAC 58.203 40.000 0.00 0.00 0.00 2.24
2954 3008 8.515695 TTAGTTCTCACGATTTAGGACAGATA 57.484 34.615 0.00 0.00 0.00 1.98
2955 3009 5.923733 AGTTCTCACGATTTAGGACAGAT 57.076 39.130 0.00 0.00 0.00 2.90
2956 3010 6.829229 TTAGTTCTCACGATTTAGGACAGA 57.171 37.500 0.00 0.00 0.00 3.41
2957 3011 6.310711 GGTTTAGTTCTCACGATTTAGGACAG 59.689 42.308 0.00 0.00 0.00 3.51
2958 3012 6.161381 GGTTTAGTTCTCACGATTTAGGACA 58.839 40.000 0.00 0.00 0.00 4.02
2959 3013 6.161381 TGGTTTAGTTCTCACGATTTAGGAC 58.839 40.000 0.00 0.00 0.00 3.85
2960 3014 6.349243 TGGTTTAGTTCTCACGATTTAGGA 57.651 37.500 0.00 0.00 0.00 2.94
2961 3015 7.386848 TCTTTGGTTTAGTTCTCACGATTTAGG 59.613 37.037 0.00 0.00 0.00 2.69
2962 3016 8.306680 TCTTTGGTTTAGTTCTCACGATTTAG 57.693 34.615 0.00 0.00 0.00 1.85
3029 3083 4.392216 GCGTCGTATTCCTCTTTTCAAAC 58.608 43.478 0.00 0.00 0.00 2.93
3030 3084 3.434299 GGCGTCGTATTCCTCTTTTCAAA 59.566 43.478 0.00 0.00 0.00 2.69
3031 3085 2.997986 GGCGTCGTATTCCTCTTTTCAA 59.002 45.455 0.00 0.00 0.00 2.69
3032 3086 2.613691 GGCGTCGTATTCCTCTTTTCA 58.386 47.619 0.00 0.00 0.00 2.69
3033 3087 1.931841 GGGCGTCGTATTCCTCTTTTC 59.068 52.381 0.00 0.00 0.00 2.29
3034 3088 1.276989 TGGGCGTCGTATTCCTCTTTT 59.723 47.619 0.00 0.00 0.00 2.27
3035 3089 0.899720 TGGGCGTCGTATTCCTCTTT 59.100 50.000 0.00 0.00 0.00 2.52
3036 3090 0.899720 TTGGGCGTCGTATTCCTCTT 59.100 50.000 0.00 0.00 0.00 2.85
3037 3091 1.068741 GATTGGGCGTCGTATTCCTCT 59.931 52.381 0.00 0.00 0.00 3.69
3038 3092 1.499049 GATTGGGCGTCGTATTCCTC 58.501 55.000 0.00 0.00 0.00 3.71
3039 3093 0.106149 GGATTGGGCGTCGTATTCCT 59.894 55.000 0.00 0.00 0.00 3.36
3040 3094 0.179067 TGGATTGGGCGTCGTATTCC 60.179 55.000 0.00 0.00 0.00 3.01
3041 3095 1.878953 ATGGATTGGGCGTCGTATTC 58.121 50.000 0.00 0.00 0.00 1.75
3042 3096 2.218603 GAATGGATTGGGCGTCGTATT 58.781 47.619 0.00 0.00 0.00 1.89
3050 3104 2.167075 CAGTTCCTTGAATGGATTGGGC 59.833 50.000 0.00 0.00 35.83 5.36
3084 3138 7.970061 ACATAATTGTATGTCAACTCAATGCAC 59.030 33.333 0.00 0.00 46.01 4.57
3098 3152 8.686397 TTTGCTGCAACTAACATAATTGTATG 57.314 30.769 15.72 0.00 42.55 2.39
3112 3166 4.935352 TTAATCACCTTTTGCTGCAACT 57.065 36.364 15.72 0.00 0.00 3.16
3116 3170 4.746611 GGCATATTAATCACCTTTTGCTGC 59.253 41.667 0.00 0.00 0.00 5.25
3154 3229 7.215789 TCCACATGTTCATTTGCTTTGTATTT 58.784 30.769 0.00 0.00 0.00 1.40
3161 3236 5.733620 AATCTCCACATGTTCATTTGCTT 57.266 34.783 0.00 0.00 0.00 3.91
3175 3250 5.146010 AGTCTCTCTGAACAAATCTCCAC 57.854 43.478 0.00 0.00 0.00 4.02
3249 3324 9.733219 GTGTACTAGTGTGAAAGTTATCTATCC 57.267 37.037 5.39 0.00 0.00 2.59
3271 3346 4.743151 CAGAGTTAGTGCGAAACAAGTGTA 59.257 41.667 0.00 0.00 0.00 2.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.