AutoCloner

Multiple sequence alignment - TraesCS6D01G019000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS6D01G019000	chr6D	100.000	3209	0	0	1	3209	7717810	7721018	0.000000e+00	5927.0
1	TraesCS6D01G019000	chr6D	83.530	2793	301	67	356	3064	7990649	7987932	0.000000e+00	2462.0
2	TraesCS6D01G019000	chr6D	79.910	1115	195	22	1124	2217	8656205	8655099	0.000000e+00	791.0
3	TraesCS6D01G019000	chr6D	79.391	1116	192	27	1127	2217	7998997	7997895	0.000000e+00	752.0
4	TraesCS6D01G019000	chr6D	92.239	335	18	4	1	335	7992127	7991801	4.850000e-128	468.0
5	TraesCS6D01G019000	chr6D	81.503	519	75	14	2073	2586	7864562	7865064	1.070000e-109	407.0
6	TraesCS6D01G019000	chr6D	87.248	149	19	0	3060	3208	7987815	7987667	1.530000e-38	171.0
7	TraesCS6D01G019000	chr6A	90.593	2530	165	24	579	3059	7990788	7993293	0.000000e+00	3286.0
8	TraesCS6D01G019000	chr6A	87.782	1506	118	18	1573	3064	8197953	8196500	0.000000e+00	1701.0
9	TraesCS6D01G019000	chr6A	79.729	1105	189	28	1137	2219	7986867	7987958	0.000000e+00	767.0
10	TraesCS6D01G019000	chr6A	81.680	988	98	40	617	1551	8199306	8198349	0.000000e+00	745.0
11	TraesCS6D01G019000	chr6A	79.392	1053	187	23	1187	2218	8212413	8211370	0.000000e+00	715.0
12	TraesCS6D01G019000	chr6A	77.916	1046	204	19	1190	2217	9355310	9356346	7.560000e-176	627.0
13	TraesCS6D01G019000	chr6A	76.318	1119	213	26	1120	2218	8175047	8176133	4.680000e-153	551.0
14	TraesCS6D01G019000	chr6A	94.412	340	13	2	1	340	7989096	7989429	4.750000e-143	518.0
15	TraesCS6D01G019000	chr6A	85.421	487	67	4	1733	2217	8395387	8394903	1.330000e-138	503.0
16	TraesCS6D01G019000	chr6A	91.667	336	20	4	1	335	8200193	8199865	2.920000e-125	459.0
17	TraesCS6D01G019000	chr6A	80.952	525	79	14	2073	2592	8130538	8131046	2.320000e-106	396.0
18	TraesCS6D01G019000	chr6A	93.333	150	10	0	3060	3209	7993426	7993575	4.170000e-54	222.0
19	TraesCS6D01G019000	chr6A	92.000	150	10	2	3060	3208	8196372	8196224	3.240000e-50	209.0
20	TraesCS6D01G019000	chr6A	87.919	149	18	0	3060	3208	8194044	8193896	3.290000e-40	176.0
21	TraesCS6D01G019000	chr6A	84.545	110	17	0	981	1090	9473100	9473209	3.380000e-20	110.0
22	TraesCS6D01G019000	chr6B	89.395	2348	174	21	774	3059	14545704	14543370	0.000000e+00	2887.0
23	TraesCS6D01G019000	chr6B	90.541	1924	131	12	725	2613	14333103	14335010	0.000000e+00	2497.0
24	TraesCS6D01G019000	chr6B	81.026	1286	204	27	961	2218	14550309	14549036	0.000000e+00	987.0
25	TraesCS6D01G019000	chr6B	96.269	402	15	0	2658	3059	14335207	14335608	0.000000e+00	660.0
26	TraesCS6D01G019000	chr6B	77.527	1108	222	20	1127	2216	16433212	16434310	2.700000e-180	641.0
27	TraesCS6D01G019000	chr6B	80.738	623	112	6	1602	2217	14629183	14628562	2.240000e-131	479.0
28	TraesCS6D01G019000	chr6B	91.395	337	20	5	1	335	14620621	14620292	1.360000e-123	453.0
29	TraesCS6D01G019000	chr6B	90.208	337	24	4	1	335	14548036	14547707	6.360000e-117	431.0
30	TraesCS6D01G019000	chr6B	78.468	483	52	25	487	936	14550847	14550384	5.280000e-68	268.0
31	TraesCS6D01G019000	chr6B	92.617	149	10	1	3060	3207	14543237	14543089	2.510000e-51	213.0
32	TraesCS6D01G019000	chr6B	96.875	64	2	0	3146	3209	14335755	14335818	1.220000e-19	108.0
33	TraesCS6D01G019000	chr6B	81.731	104	14	4	981	1079	53077161	53077058	7.380000e-12	82.4
34	TraesCS6D01G019000	chr1B	87.722	790	60	21	824	1580	27364849	27364064	0.000000e+00	887.0
35	TraesCS6D01G019000	chr1B	78.204	1303	218	42	961	2218	27753059	27751778	0.000000e+00	773.0
36	TraesCS6D01G019000	chr1B	86.854	213	17	7	101	310	27675662	27675458	8.960000e-56	228.0
37	TraesCS6D01G019000	chr1B	91.463	164	14	0	652	815	27996253	27996090	3.220000e-55	226.0
38	TraesCS6D01G019000	chr5A	86.066	244	26	5	92	335	650826601	650826836	4.110000e-64	255.0
39	TraesCS6D01G019000	chr2D	79.213	178	18	11	2901	3064	588164204	588164376	4.380000e-19	106.0

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS6D01G019000	chr6D	7717810	7721018	3208	False	5927.000000	5927	100.000000	1	3209	1	chr6D.!!$F1	3208
1	TraesCS6D01G019000	chr6D	7987667	7992127	4460	True	1033.666667	2462	87.672333	1	3208	3	chr6D.!!$R3	3207
2	TraesCS6D01G019000	chr6D	8655099	8656205	1106	True	791.000000	791	79.910000	1124	2217	1	chr6D.!!$R2	1093
3	TraesCS6D01G019000	chr6D	7997895	7998997	1102	True	752.000000	752	79.391000	1127	2217	1	chr6D.!!$R1	1090
4	TraesCS6D01G019000	chr6D	7864562	7865064	502	False	407.000000	407	81.503000	2073	2586	1	chr6D.!!$F2	513
5	TraesCS6D01G019000	chr6A	7986867	7993575	6708	False	1198.250000	3286	89.516750	1	3209	4	chr6A.!!$F5	3208
6	TraesCS6D01G019000	chr6A	8211370	8212413	1043	True	715.000000	715	79.392000	1187	2218	1	chr6A.!!$R1	1031
7	TraesCS6D01G019000	chr6A	8193896	8200193	6297	True	658.000000	1701	88.209600	1	3208	5	chr6A.!!$R3	3207
8	TraesCS6D01G019000	chr6A	9355310	9356346	1036	False	627.000000	627	77.916000	1190	2217	1	chr6A.!!$F3	1027
9	TraesCS6D01G019000	chr6A	8175047	8176133	1086	False	551.000000	551	76.318000	1120	2218	1	chr6A.!!$F2	1098
10	TraesCS6D01G019000	chr6A	8130538	8131046	508	False	396.000000	396	80.952000	2073	2592	1	chr6A.!!$F1	519
11	TraesCS6D01G019000	chr6B	14333103	14335818	2715	False	1088.333333	2497	94.561667	725	3209	3	chr6B.!!$F2	2484
12	TraesCS6D01G019000	chr6B	14543089	14550847	7758	True	957.200000	2887	86.342800	1	3207	5	chr6B.!!$R4	3206
13	TraesCS6D01G019000	chr6B	16433212	16434310	1098	False	641.000000	641	77.527000	1127	2216	1	chr6B.!!$F1	1089
14	TraesCS6D01G019000	chr6B	14628562	14629183	621	True	479.000000	479	80.738000	1602	2217	1	chr6B.!!$R2	615
15	TraesCS6D01G019000	chr1B	27364064	27364849	785	True	887.000000	887	87.722000	824	1580	1	chr1B.!!$R1	756
16	TraesCS6D01G019000	chr1B	27751778	27753059	1281	True	773.000000	773	78.204000	961	2218	1	chr1B.!!$R3	1257

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
245	3267	0.604243	TAACGAGTTGCCATTGCGGT	60.604	50.0	0.0	0.0	41.78	5.68	F
1047	6477	0.633378	TCCAGATGCTCTCCTCTCCA	59.367	55.0	0.0	0.0	0.00	3.86	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1684	7536	0.036388	ATTGTCCGAACACGCTCCAT	60.036	50.0	0.00	0.0	34.35	3.41	R
2649	8547	0.034896	AAGCGTCGATGTTCCAGGTT	59.965	50.0	6.48	0.0	0.00	3.50	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
93	3115	8.527810	TGGCTACCTTTGGAAAACTTTATATTG	58.472	33.333	0.00	0.00	0.00	1.90
197	3219	8.579006	CATTTTATGCCAATATCCACACATACT	58.421	33.333	0.00	0.00	0.00	2.12
199	3221	4.502105	TGCCAATATCCACACATACTGT	57.498	40.909	0.00	0.00	0.00	3.55
200	3222	5.622346	TGCCAATATCCACACATACTGTA	57.378	39.130	0.00	0.00	0.00	2.74
201	3223	5.364778	TGCCAATATCCACACATACTGTAC	58.635	41.667	0.00	0.00	0.00	2.90
202	3224	5.104735	TGCCAATATCCACACATACTGTACA	60.105	40.000	0.00	0.00	0.00	2.90
203	3225	5.997746	GCCAATATCCACACATACTGTACAT	59.002	40.000	0.00	0.00	0.00	2.29
245	3267	0.604243	TAACGAGTTGCCATTGCGGT	60.604	50.000	0.00	0.00	41.78	5.68
277	3300	8.417884	CACTTGAGTTATTTTCCCCTTGTTTTA	58.582	33.333	0.00	0.00	0.00	1.52
278	3301	9.154632	ACTTGAGTTATTTTCCCCTTGTTTTAT	57.845	29.630	0.00	0.00	0.00	1.40
336	3361	7.426929	CCATGTTATGGTTGAGTAGATAAGC	57.573	40.000	0.00	0.00	45.54	3.09
337	3362	7.220030	CCATGTTATGGTTGAGTAGATAAGCT	58.780	38.462	0.00	0.00	45.54	3.74
339	3364	6.582636	TGTTATGGTTGAGTAGATAAGCTGG	58.417	40.000	0.00	0.00	0.00	4.85
340	3365	3.543680	TGGTTGAGTAGATAAGCTGGC	57.456	47.619	0.00	0.00	0.00	4.85
341	3366	2.837591	TGGTTGAGTAGATAAGCTGGCA	59.162	45.455	0.00	0.00	0.00	4.92
342	3367	3.118629	TGGTTGAGTAGATAAGCTGGCAG	60.119	47.826	10.94	10.94	0.00	4.85
343	3368	2.869192	GTTGAGTAGATAAGCTGGCAGC	59.131	50.000	31.56	31.56	42.84	5.25
372	4711	2.707849	CGACGGATGGACGGAAGGT	61.708	63.158	0.00	0.00	38.39	3.50
398	4737	3.899981	AATCGTTGCTCTGGCGCCA	62.900	57.895	30.59	30.59	42.25	5.69
418	4757	6.929049	GCGCCATATATTATATGCAGTCCTAA	59.071	38.462	15.45	0.00	0.00	2.69
473	5321	9.474313	TCATCAGGTTTAATAAGTGGCTATTTT	57.526	29.630	0.00	0.00	0.00	1.82
544	5414	6.767456	AGGCAATGTGATTTCAATTTGGTTA	58.233	32.000	0.00	0.00	0.00	2.85
561	5887	3.451178	TGGTTAGTTACATCTCCAGAGGC	59.549	47.826	0.00	0.00	0.00	4.70
606	5933	5.609533	ACTAGGTAAAGGCGTATCAATGT	57.390	39.130	0.00	0.00	0.00	2.71
646	5974	3.712091	ATGGGTTCTCGATTCTACGAC	57.288	47.619	0.00	0.00	37.37	4.34
647	5982	1.399440	TGGGTTCTCGATTCTACGACG	59.601	52.381	0.00	0.00	37.37	5.12
659	5994	8.046841	TCGATTCTACGACGATTTTTATGAAG	57.953	34.615	0.00	0.00	37.37	3.02
730	6069	1.409064	TCCCAAGAATCATCGACCGAG	59.591	52.381	0.00	0.00	0.00	4.63
771	6111	5.159209	GTCATCTTCTTGCAATCACAAAGG	58.841	41.667	0.00	0.00	0.00	3.11
1047	6477	0.633378	TCCAGATGCTCTCCTCTCCA	59.367	55.000	0.00	0.00	0.00	3.86
1061	6491	3.083349	TCCATCCGCCTCCACCAG	61.083	66.667	0.00	0.00	0.00	4.00
1105	6553	2.735883	CCACCCGACCACACGTAA	59.264	61.111	0.00	0.00	0.00	3.18
1639	7485	4.415150	AGTGCGGGCTGGGTGATG	62.415	66.667	0.00	0.00	0.00	3.07
1684	7536	2.033448	GGATGGTCACCGCCAACA	59.967	61.111	0.65	0.00	42.48	3.33
1872	7724	0.107017	GCATTGCTCTCCCTAAGGCA	60.107	55.000	0.16	0.00	32.03	4.75
1911	7763	1.717937	GAACGAATCGCTGCAGCAT	59.282	52.632	36.03	24.81	42.21	3.79
2201	8053	4.021368	GGAAGTGCCCGCTAGATTTAGATA	60.021	45.833	0.00	0.00	0.00	1.98
2253	8136	5.244785	TGTAGAATCGCGATGTAGTTCTT	57.755	39.130	24.47	4.41	32.02	2.52
2370	8254	7.921786	TTATGTACTGATTTCTCCTTTGTGG	57.078	36.000	0.00	0.00	37.10	4.17
2421	8306	6.042777	TGTTCAGCTCTTACTTCATAATCGG	58.957	40.000	0.00	0.00	0.00	4.18
2493	8379	6.595794	CCATTTTGTGAATTTCAGTTCATGC	58.404	36.000	0.00	0.00	39.99	4.06
2547	8433	2.169352	GCAGCATCAGAGAAAGGTAGGA	59.831	50.000	0.00	0.00	0.00	2.94
2620	8517	0.251354	GAGGCAGTGCTGATTGAGGA	59.749	55.000	16.11	0.00	0.00	3.71
2649	8547	0.249155	GAAGACGTGACGACCCAACA	60.249	55.000	13.70	0.00	0.00	3.33
2833	8882	0.675633	GTTCATGCTGGCAACCTTGT	59.324	50.000	0.00	0.00	0.00	3.16
2863	8912	4.511527	CTTGCTGGTTGATGATAGTGTCT	58.488	43.478	0.00	0.00	0.00	3.41
2901	8952	1.883275	TGCTAAACGAAACCCATGTGG	59.117	47.619	0.00	0.00	41.37	4.17
2915	8966	2.363038	CCATGTGGGGTGCTTCATAATG	59.637	50.000	0.00	0.00	0.00	1.90
3037	9094	3.978855	CAGTTGCACACATCACTGAATTG	59.021	43.478	8.01	0.00	0.00	2.32
3039	9096	4.023450	AGTTGCACACATCACTGAATTGAG	60.023	41.667	0.00	0.00	0.00	3.02
3068	9257	4.697352	GCCTCACTTTCTTTCTTGATAGCA	59.303	41.667	0.00	0.00	0.00	3.49
3075	9264	1.674962	CTTTCTTGATAGCAGGGCAGC	59.325	52.381	0.00	0.00	0.00	5.25
3088	9277	3.350833	CAGGGCAGCTAAAGAAACTGAT	58.649	45.455	0.00	0.00	33.10	2.90
3089	9278	3.760684	CAGGGCAGCTAAAGAAACTGATT	59.239	43.478	0.00	0.00	33.10	2.57
3096	9285	6.161381	CAGCTAAAGAAACTGATTTGGCATT	58.839	36.000	8.39	0.00	43.09	3.56

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
197	3219	6.485313	CCAAGAGTCCAACTTTAACATGTACA	59.515	38.462	0.00	0.00	0.00	2.90
199	3221	6.833041	TCCAAGAGTCCAACTTTAACATGTA	58.167	36.000	0.00	0.00	0.00	2.29
200	3222	5.690865	TCCAAGAGTCCAACTTTAACATGT	58.309	37.500	0.00	0.00	0.00	3.21
201	3223	5.765182	ACTCCAAGAGTCCAACTTTAACATG	59.235	40.000	0.00	0.00	38.71	3.21
202	3224	5.941788	ACTCCAAGAGTCCAACTTTAACAT	58.058	37.500	0.00	0.00	38.71	2.71
203	3225	5.367945	ACTCCAAGAGTCCAACTTTAACA	57.632	39.130	0.00	0.00	38.71	2.41
245	3267	5.300792	GGGGAAAATAACTCAAGTGTGTCAA	59.699	40.000	0.00	0.00	0.00	3.18
277	3300	7.224557	GCAAACAGGAGTGACACAAATAAAAAT	59.775	33.333	8.59	0.00	0.00	1.82
278	3301	6.533367	GCAAACAGGAGTGACACAAATAAAAA	59.467	34.615	8.59	0.00	0.00	1.94
293	3317	0.947244	GGTCTGTGTGCAAACAGGAG	59.053	55.000	31.92	12.31	46.27	3.69
335	3360	2.819595	TCCGATTTCGCTGCCAGC	60.820	61.111	6.63	6.63	38.02	4.85
336	3361	2.464459	GGTCCGATTTCGCTGCCAG	61.464	63.158	0.00	0.00	38.18	4.85
337	3362	2.435938	GGTCCGATTTCGCTGCCA	60.436	61.111	0.00	0.00	38.18	4.92
339	3364	2.508439	TCGGTCCGATTTCGCTGC	60.508	61.111	10.71	0.00	38.18	5.25
340	3365	2.505498	CGTCGGTCCGATTTCGCTG	61.505	63.158	18.75	0.00	38.42	5.18
341	3366	2.202570	CGTCGGTCCGATTTCGCT	60.203	61.111	18.75	0.00	38.42	4.93
342	3367	2.948840	ATCCGTCGGTCCGATTTCGC	62.949	60.000	18.75	2.76	38.42	4.70
343	3368	1.065273	ATCCGTCGGTCCGATTTCG	59.935	57.895	18.75	16.02	38.42	3.46
344	3369	0.874607	CCATCCGTCGGTCCGATTTC	60.875	60.000	18.75	3.57	38.42	2.17
345	3370	1.143183	CCATCCGTCGGTCCGATTT	59.857	57.895	18.75	0.00	38.42	2.17
347	3372	2.124024	TCCATCCGTCGGTCCGAT	60.124	61.111	18.75	0.00	38.42	4.18
348	3373	3.136123	GTCCATCCGTCGGTCCGA	61.136	66.667	10.71	10.71	0.00	4.55
372	4711	2.030893	CCAGAGCAACGATTTCAAAGCA	60.031	45.455	0.00	0.00	0.00	3.91
424	4763	7.410174	TGATGCTCCCCTAAATAAAAGAGAAA	58.590	34.615	0.00	0.00	0.00	2.52
491	5361	5.417894	ACAACGGTTCTTTCCTTTCTTTTCT	59.582	36.000	0.00	0.00	0.00	2.52
544	5414	0.461961	GCGCCTCTGGAGATGTAACT	59.538	55.000	0.00	0.00	0.00	2.24
606	5933	0.981183	ATCTGGTGTGGGCGTTAGAA	59.019	50.000	0.00	0.00	0.00	2.10
630	5958	5.928601	AAAATCGTCGTAGAATCGAGAAC	57.071	39.130	0.00	0.00	38.37	3.01
646	5974	9.424659	GCAAATAAAATGCCTTCATAAAAATCG	57.575	29.630	0.00	0.00	37.85	3.34
659	5994	6.704512	TCGAAGAAAAGCAAATAAAATGCC	57.295	33.333	0.00	0.00	44.91	4.40
699	6034	6.128445	CGATGATTCTTGGGATACATTGTAGC	60.128	42.308	3.46	3.46	39.74	3.58
730	6069	2.159184	TGACCTGAGATTGAGCATCGAC	60.159	50.000	0.00	0.00	38.61	4.20
822	6162	6.649141	GCCCCGTCTTTTCTCAAAAATAAAAT	59.351	34.615	0.00	0.00	34.00	1.82
827	6183	2.962421	TGCCCCGTCTTTTCTCAAAAAT	59.038	40.909	0.00	0.00	34.00	1.82
893	6290	1.503818	TTTCGTCTGCGTGAAAGGGC	61.504	55.000	0.00	0.00	39.49	5.19
1047	6477	3.474570	GAGCTGGTGGAGGCGGAT	61.475	66.667	0.00	0.00	0.00	4.18
1101	6549	4.191485	CTGCTCCGCGCGTTTACG	62.191	66.667	29.95	13.21	43.27	3.18
1684	7536	0.036388	ATTGTCCGAACACGCTCCAT	60.036	50.000	0.00	0.00	34.35	3.41
1872	7724	1.961277	CTTGGCGAGCAGAAACGGT	60.961	57.895	0.00	0.00	0.00	4.83
1927	7779	1.056660	TCCAACCCAACCTCAGAGAC	58.943	55.000	0.00	0.00	0.00	3.36
1938	7790	3.240011	TACGCCGGTTCCAACCCA	61.240	61.111	1.90	0.00	46.53	4.51
2011	7863	8.715191	TTGAGAAACTTTAAAACGTAGTACCA	57.285	30.769	0.00	0.00	45.00	3.25
2201	8053	9.911788	ATTACTCAGAATTCTTGGTTCATGTAT	57.088	29.630	4.86	0.00	0.00	2.29
2253	8136	4.027674	TGACCAAAACATAGCTGGCTTA	57.972	40.909	0.00	0.00	33.19	3.09
2401	8286	4.371786	TGCCGATTATGAAGTAAGAGCTG	58.628	43.478	0.00	0.00	0.00	4.24
2406	8291	4.641396	TCCCATGCCGATTATGAAGTAAG	58.359	43.478	0.00	0.00	0.00	2.34
2421	8306	1.200948	GAAGCAGTGAACTTCCCATGC	59.799	52.381	0.00	0.00	38.05	4.06
2493	8379	5.500234	TCCTGAAAGTCAAGATAACCATGG	58.500	41.667	11.19	11.19	0.00	3.66
2547	8433	1.527034	CATGCACCTACAGCTTGTGT	58.473	50.000	0.00	0.00	43.86	3.72
2620	8517	2.925170	ACGTCTTCCAGCTGCCCT	60.925	61.111	8.66	0.00	0.00	5.19
2649	8547	0.034896	AAGCGTCGATGTTCCAGGTT	59.965	50.000	6.48	0.00	0.00	3.50
2821	8870	2.297033	AGCACAATAACAAGGTTGCCAG	59.703	45.455	0.00	0.00	0.00	4.85
2833	8882	3.825585	TCATCAACCAGCAAGCACAATAA	59.174	39.130	0.00	0.00	0.00	1.40
2901	8952	4.101741	AGGTCTCTACATTATGAAGCACCC	59.898	45.833	0.00	0.00	0.00	4.61
2905	8956	8.950208	AAGTAAAGGTCTCTACATTATGAAGC	57.050	34.615	0.00	0.00	0.00	3.86
2915	8966	6.693466	AGAAGCAGAAAGTAAAGGTCTCTAC	58.307	40.000	0.00	0.00	0.00	2.59
3037	9094	0.398318	AGAAAGTGAGGCCACCACTC	59.602	55.000	24.95	16.40	43.42	3.51
3039	9096	1.609072	GAAAGAAAGTGAGGCCACCAC	59.391	52.381	17.52	17.52	44.22	4.16
3068	9257	3.728385	ATCAGTTTCTTTAGCTGCCCT	57.272	42.857	0.00	0.00	0.00	5.19
3075	9264	8.592105	TCAAAATGCCAAATCAGTTTCTTTAG	57.408	30.769	0.00	0.00	32.75	1.85
3088	9277	4.796606	TGGGGAAAAATCAAAATGCCAAA	58.203	34.783	0.00	0.00	0.00	3.28
3089	9278	4.443978	TGGGGAAAAATCAAAATGCCAA	57.556	36.364	0.00	0.00	0.00	4.52
3096	9285	4.778958	AGAGCATGATGGGGAAAAATCAAA	59.221	37.500	0.00	0.00	36.44	2.69

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.