AutoCloner

Multiple sequence alignment - TraesCS6D01G018500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS6D01G018500	chr6D	100.000	3448	0	0	1	3448	7550863	7554310	0.000000e+00	6368.0
1	TraesCS6D01G018500	chr6D	96.873	1855	31	13	1	1854	7509755	7507927	0.000000e+00	3079.0
2	TraesCS6D01G018500	chr6D	95.517	513	15	6	880	1390	7512785	7512279	0.000000e+00	813.0
3	TraesCS6D01G018500	chr6D	94.878	449	18	2	2933	3381	315179456	315179013	0.000000e+00	697.0
4	TraesCS6D01G018500	chr6D	97.727	44	1	0	2896	2939	55114904	55114861	3.690000e-10	76.8
5	TraesCS6D01G018500	chr6B	88.825	2962	169	66	1	2903	14125115	14127973	0.000000e+00	3487.0
6	TraesCS6D01G018500	chr6B	90.758	1082	90	6	1433	2510	13975279	13974204	0.000000e+00	1435.0
7	TraesCS6D01G018500	chr6B	92.936	453	27	2	2939	3390	14127970	14128418	0.000000e+00	654.0
8	TraesCS6D01G018500	chr6A	91.908	1866	74	36	1059	2896	7697431	7699247	0.000000e+00	2538.0
9	TraesCS6D01G018500	chr6A	89.904	1040	92	9	1433	2466	7398224	7397192	0.000000e+00	1327.0
10	TraesCS6D01G018500	chr6A	83.490	745	79	15	1	719	7696457	7697183	0.000000e+00	654.0
11	TraesCS6D01G018500	chr6A	92.179	179	14	0	839	1017	7697253	7697431	1.590000e-63	254.0
12	TraesCS6D01G018500	chr6A	95.455	44	2	0	2893	2936	7700382	7700425	1.720000e-08	71.3
13	TraesCS6D01G018500	chr5A	84.460	1287	164	18	1177	2448	687655162	687656427	0.000000e+00	1236.0
14	TraesCS6D01G018500	chr5A	97.727	44	1	0	2896	2939	433781715	433781672	3.690000e-10	76.8
15	TraesCS6D01G018500	chr4D	86.713	1016	127	3	1440	2448	503176157	503177171	0.000000e+00	1122.0
16	TraesCS6D01G018500	chr4D	90.071	141	14	0	1177	1317	503175936	503176076	2.110000e-42	183.0
17	TraesCS6D01G018500	chr4B	86.163	1019	121	15	1440	2448	648269527	648270535	0.000000e+00	1083.0
18	TraesCS6D01G018500	chr4B	86.065	1019	122	15	1440	2448	648243497	648244505	0.000000e+00	1077.0
19	TraesCS6D01G018500	chr4B	86.022	1023	120	14	1440	2448	647693611	647692598	0.000000e+00	1075.0
20	TraesCS6D01G018500	chr4B	85.939	1017	127	12	1440	2448	648194229	648195237	0.000000e+00	1072.0
21	TraesCS6D01G018500	chr4B	85.855	1018	126	14	1440	2448	648219623	648220631	0.000000e+00	1066.0
22	TraesCS6D01G018500	chr4B	90.647	139	13	0	1177	1315	647693849	647693711	5.880000e-43	185.0
23	TraesCS6D01G018500	chr3D	95.768	449	15	1	2933	3381	552257475	552257919	0.000000e+00	721.0
24	TraesCS6D01G018500	chr3D	92.793	333	20	1	3049	3381	5654189	5654517	2.410000e-131	479.0
25	TraesCS6D01G018500	chr3D	81.377	247	40	5	283	529	546405304	546405544	2.710000e-46	196.0
26	TraesCS6D01G018500	chr3D	100.000	44	0	0	2896	2939	608006827	608006870	7.930000e-12	82.4
27	TraesCS6D01G018500	chrUn	95.100	449	18	1	2933	3381	305660675	305660231	0.000000e+00	704.0
28	TraesCS6D01G018500	chrUn	95.100	449	18	1	2933	3381	342936532	342936088	0.000000e+00	704.0
29	TraesCS6D01G018500	chr2A	94.209	449	22	1	2933	3381	19573212	19572768	0.000000e+00	682.0
30	TraesCS6D01G018500	chr2A	95.745	47	2	0	2893	2939	4031286	4031332	3.690000e-10	76.8
31	TraesCS6D01G018500	chr5B	95.259	232	11	0	3150	3381	380799897	380800128	5.440000e-98	368.0
32	TraesCS6D01G018500	chr5B	82.927	246	36	5	285	529	386000373	386000133	2.080000e-52	217.0
33	TraesCS6D01G018500	chr5D	93.886	229	13	1	3159	3387	444083991	444083764	9.160000e-91	344.0
34	TraesCS6D01G018500	chr7B	80.460	261	43	6	285	543	735926047	735925793	3.510000e-45	193.0
35	TraesCS6D01G018500	chr7B	79.352	247	43	7	285	529	221992826	221992586	2.130000e-37	167.0
36	TraesCS6D01G018500	chr7B	97.674	43	1	0	2896	2938	676482228	676482186	1.330000e-09	75.0
37	TraesCS6D01G018500	chr2B	81.224	245	40	4	285	529	670843968	670843730	3.510000e-45	193.0
38	TraesCS6D01G018500	chr2D	79.839	248	45	4	285	532	19617321	19617079	3.540000e-40	176.0
39	TraesCS6D01G018500	chr3A	97.872	47	1	0	2893	2939	750331010	750330964	7.930000e-12	82.4
40	TraesCS6D01G018500	chr1B	95.745	47	2	0	2893	2939	7148665	7148711	3.690000e-10	76.8
41	TraesCS6D01G018500	chr1A	97.727	44	1	0	2896	2939	8436617	8436574	3.690000e-10	76.8

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS6D01G018500	chr6D	7550863	7554310	3447	False	6368.000	6368	100.0000	1	3448	1	chr6D.!!$F1	3447
1	TraesCS6D01G018500	chr6D	7507927	7512785	4858	True	1946.000	3079	96.1950	1	1854	2	chr6D.!!$R3	1853
2	TraesCS6D01G018500	chr6B	14125115	14128418	3303	False	2070.500	3487	90.8805	1	3390	2	chr6B.!!$F1	3389
3	TraesCS6D01G018500	chr6B	13974204	13975279	1075	True	1435.000	1435	90.7580	1433	2510	1	chr6B.!!$R1	1077
4	TraesCS6D01G018500	chr6A	7397192	7398224	1032	True	1327.000	1327	89.9040	1433	2466	1	chr6A.!!$R1	1033
5	TraesCS6D01G018500	chr6A	7696457	7700425	3968	False	879.325	2538	90.7580	1	2936	4	chr6A.!!$F1	2935
6	TraesCS6D01G018500	chr5A	687655162	687656427	1265	False	1236.000	1236	84.4600	1177	2448	1	chr5A.!!$F1	1271
7	TraesCS6D01G018500	chr4D	503175936	503177171	1235	False	652.500	1122	88.3920	1177	2448	2	chr4D.!!$F1	1271
8	TraesCS6D01G018500	chr4B	648269527	648270535	1008	False	1083.000	1083	86.1630	1440	2448	1	chr4B.!!$F4	1008
9	TraesCS6D01G018500	chr4B	648243497	648244505	1008	False	1077.000	1077	86.0650	1440	2448	1	chr4B.!!$F3	1008
10	TraesCS6D01G018500	chr4B	648194229	648195237	1008	False	1072.000	1072	85.9390	1440	2448	1	chr4B.!!$F1	1008
11	TraesCS6D01G018500	chr4B	648219623	648220631	1008	False	1066.000	1066	85.8550	1440	2448	1	chr4B.!!$F2	1008
12	TraesCS6D01G018500	chr4B	647692598	647693849	1251	True	630.000	1075	88.3345	1177	2448	2	chr4B.!!$R1	1271

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1318	4403	3.489398	GCTGACCAGAATCTGTACTACCG	60.489	52.174	9.63	0.0	0.0	4.02	F
2159	5259	1.517257	CGACGGTGGTGCTCATCTC	60.517	63.158	0.00	0.0	0.0	2.75	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2402	5514	0.036388	TCTCAATTGTGACTCCGGGC	60.036	55.0	0.0	0.0	0.0	6.13	R
3406	7700	0.320697	CCGTCGTCTCCCTCCTTTTT	59.679	55.0	0.0	0.0	0.0	1.94	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
1317	4402	3.702045	AGCTGACCAGAATCTGTACTACC	59.298	47.826	9.63	0.00	0.00	3.18
1318	4403	3.489398	GCTGACCAGAATCTGTACTACCG	60.489	52.174	9.63	0.00	0.00	4.02
1346	4431	1.959226	CCCCTGTTCACCACGTTCG	60.959	63.158	0.00	0.00	0.00	3.95
1406	4503	4.628074	TCCTGCTACCGCTAATGATTTAC	58.372	43.478	0.00	0.00	36.97	2.01
2014	5111	4.681978	GCCCAAGACCGAGCACGT	62.682	66.667	2.18	0.00	37.88	4.49
2120	5217	4.831307	CTCCTCGACGCGTTCCGG	62.831	72.222	15.53	14.18	42.52	5.14
2135	5232	3.203412	CGGGGAGGAGACGACGAG	61.203	72.222	0.00	0.00	0.00	4.18
2159	5259	1.517257	CGACGGTGGTGCTCATCTC	60.517	63.158	0.00	0.00	0.00	2.75
2279	5391	4.847444	GAGCCGGAGAAGCTGGGC	62.847	72.222	5.05	0.00	43.79	5.36
2455	5567	1.257750	TGTCCACGCTAGGTGCATCT	61.258	55.000	4.13	4.13	45.62	2.90
2491	5604	2.083002	CCTTCTCAAAGCTCAAGCCTC	58.917	52.381	0.00	0.00	43.38	4.70
2511	5624	9.886132	AAGCCTCCTTAATTATACCATTATACG	57.114	33.333	0.00	0.00	0.00	3.06
2542	5655	2.070028	TGTATTTGTGTGTGCGCGTAT	58.930	42.857	8.43	0.00	0.00	3.06
2586	5699	5.107607	ACACGTACGTCACTCAAATCAAATC	60.108	40.000	19.94	0.00	0.00	2.17
2636	5749	3.266772	AGCTTTCAGTCCATGTCCCATAA	59.733	43.478	0.00	0.00	0.00	1.90
2720	5845	8.779354	AAAAGAAACTAGCTACTTGGATGTAG	57.221	34.615	0.00	0.00	41.91	2.74
2788	5913	3.804873	GTCTTTATGAAGGCGGACAGATC	59.195	47.826	0.00	0.00	33.56	2.75
2869	6025	8.183104	TGGTGTATTCCACATTAAAACATGAA	57.817	30.769	0.00	0.00	46.44	2.57
2938	7232	3.197790	CGGGCCATGAAGTCGCTG	61.198	66.667	4.39	0.00	0.00	5.18
2939	7233	3.512516	GGGCCATGAAGTCGCTGC	61.513	66.667	4.39	0.00	0.00	5.25
2940	7234	2.437359	GGCCATGAAGTCGCTGCT	60.437	61.111	0.00	0.00	0.00	4.24
2945	7239	1.524355	CCATGAAGTCGCTGCTAATCG	59.476	52.381	0.00	0.00	0.00	3.34
2954	7248	1.533965	CGCTGCTAATCGTACTGCTGA	60.534	52.381	0.00	0.00	0.00	4.26
2974	7268	1.302913	TGTGGTATGGTGTTGCGGG	60.303	57.895	0.00	0.00	0.00	6.13
3009	7303	4.717233	AATTATTTTCACAGCATGCCGA	57.283	36.364	15.66	5.98	42.53	5.54
3061	7355	0.109597	CGAACTGGAGGCATGCAAAC	60.110	55.000	21.36	8.90	0.00	2.93
3123	7417	1.374758	GGTGGAGTTGGACTGCTCG	60.375	63.158	1.44	0.00	37.46	5.03
3159	7453	4.980590	TGCTAAATTAATGCCACTGAACG	58.019	39.130	0.00	0.00	0.00	3.95
3201	7495	3.136443	ACCATTGTGAGTGAACTTCAGGA	59.864	43.478	0.00	0.00	0.00	3.86
3204	7498	4.753516	TTGTGAGTGAACTTCAGGAGAA	57.246	40.909	0.00	0.00	0.00	2.87
3239	7533	8.046867	TGATAGGGAGATCTCAGTTACTCTTA	57.953	38.462	23.85	6.18	0.00	2.10
3240	7534	8.674173	TGATAGGGAGATCTCAGTTACTCTTAT	58.326	37.037	23.85	10.39	0.00	1.73
3283	7577	6.366340	AGTTAGTCATAGTCTAGCTGCCTAA	58.634	40.000	0.00	0.00	30.15	2.69
3284	7578	6.488683	AGTTAGTCATAGTCTAGCTGCCTAAG	59.511	42.308	0.00	0.00	30.15	2.18
3300	7594	0.813184	TAAGGGCGTTGTACTCCTCG	59.187	55.000	2.08	0.00	0.00	4.63
3304	7598	1.153881	GCGTTGTACTCCTCGGACC	60.154	63.158	0.00	0.00	0.00	4.46
3327	7621	1.829849	GGTGTGGTTAGGAGGAGGTAC	59.170	57.143	0.00	0.00	0.00	3.34
3331	7625	2.759535	GTGGTTAGGAGGAGGTACAGAC	59.240	54.545	0.00	0.00	0.00	3.51
3355	7649	4.942761	AATTGTGAACTTGTGCAAGGAT	57.057	36.364	15.31	4.84	42.53	3.24
3357	7651	2.929641	TGTGAACTTGTGCAAGGATGA	58.070	42.857	15.31	0.00	42.53	2.92
3360	7654	2.229543	TGAACTTGTGCAAGGATGATGC	59.770	45.455	15.31	0.00	42.53	3.91
3383	7677	5.368989	CACCACCTTAAGTAATGAGATCCC	58.631	45.833	0.97	0.00	0.00	3.85
3405	7699	3.189646	CCACCCCTCCCCCACAAA	61.190	66.667	0.00	0.00	0.00	2.83
3406	7700	2.784654	CCACCCCTCCCCCACAAAA	61.785	63.158	0.00	0.00	0.00	2.44
3407	7701	1.234529	CACCCCTCCCCCACAAAAA	59.765	57.895	0.00	0.00	0.00	1.94
3424	7718	3.908737	AAAAAGGAGGGAGACGACG	57.091	52.632	0.00	0.00	0.00	5.12
3425	7719	0.320697	AAAAAGGAGGGAGACGACGG	59.679	55.000	0.00	0.00	0.00	4.79
3426	7720	1.542187	AAAAGGAGGGAGACGACGGG	61.542	60.000	0.00	0.00	0.00	5.28
3427	7721	2.726792	AAAGGAGGGAGACGACGGGT	62.727	60.000	0.00	0.00	0.00	5.28
3428	7722	2.679287	GGAGGGAGACGACGGGTT	60.679	66.667	0.00	0.00	0.00	4.11
3429	7723	2.572284	GAGGGAGACGACGGGTTG	59.428	66.667	0.00	0.00	0.00	3.77
3430	7724	2.203596	AGGGAGACGACGGGTTGT	60.204	61.111	0.00	0.00	0.00	3.32
3431	7725	1.813728	GAGGGAGACGACGGGTTGTT	61.814	60.000	0.00	0.00	0.00	2.83
3432	7726	1.666872	GGGAGACGACGGGTTGTTG	60.667	63.158	0.00	0.00	38.02	3.33
3438	7732	2.589442	GACGGGTTGTTGTCGGCA	60.589	61.111	0.00	0.00	31.36	5.69
3439	7733	2.124653	ACGGGTTGTTGTCGGCAA	60.125	55.556	0.00	0.00	0.00	4.52
3440	7734	2.113131	GACGGGTTGTTGTCGGCAAG	62.113	60.000	0.75	0.00	34.94	4.01
3441	7735	2.903547	CGGGTTGTTGTCGGCAAGG	61.904	63.158	0.75	0.00	34.94	3.61
3442	7736	2.335011	GGTTGTTGTCGGCAAGGC	59.665	61.111	0.75	0.00	34.94	4.35
3443	7737	2.485795	GGTTGTTGTCGGCAAGGCA	61.486	57.895	0.75	0.00	34.94	4.75
3444	7738	1.008538	GTTGTTGTCGGCAAGGCAG	60.009	57.895	0.75	0.00	34.99	4.85
3445	7739	2.844451	TTGTTGTCGGCAAGGCAGC	61.844	57.895	0.75	0.00	34.99	5.25
3446	7740	3.286751	GTTGTCGGCAAGGCAGCA	61.287	61.111	0.75	0.00	35.64	4.41
3447	7741	2.979676	TTGTCGGCAAGGCAGCAG	60.980	61.111	0.00	0.27	34.99	4.24

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
1317	4402	2.676342	GTGAACAGGGGTAAACATAGCG	59.324	50.000	0.00	0.00	0.00	4.26
1318	4403	3.014623	GGTGAACAGGGGTAAACATAGC	58.985	50.000	0.00	0.00	0.00	2.97
1346	4431	5.295431	TGCATGCAAATTGTACTGTAGTC	57.705	39.130	20.30	0.00	0.00	2.59
1721	4818	1.003839	GAGGATGGTGCGGTTGACA	60.004	57.895	0.00	0.00	0.00	3.58
1995	5092	2.743928	GTGCTCGGTCTTGGGCAG	60.744	66.667	0.00	0.00	35.29	4.85
2014	5111	3.670637	GAGACCTGCATGCCGAGCA	62.671	63.158	16.68	1.01	44.86	4.26
2120	5217	2.114051	GTCCTCGTCGTCTCCTCCC	61.114	68.421	0.00	0.00	0.00	4.30
2159	5259	1.301716	CCCAGATAACGGCGATGGG	60.302	63.158	16.62	17.93	44.42	4.00
2402	5514	0.036388	TCTCAATTGTGACTCCGGGC	60.036	55.000	0.00	0.00	0.00	6.13
2455	5567	2.050144	GAAGGATGACTGGAGGCCATA	58.950	52.381	5.01	0.00	30.82	2.74
2511	5624	6.228527	CACACACAAATACATACGAACGTAC	58.771	40.000	9.19	0.00	33.01	3.67
2517	5630	2.092995	GCGCACACACAAATACATACGA	59.907	45.455	0.30	0.00	0.00	3.43
2542	5655	4.443621	TGTCCATTTAGTTTGACACACGA	58.556	39.130	0.00	0.00	33.09	4.35
2768	5893	3.797039	TGATCTGTCCGCCTTCATAAAG	58.203	45.455	0.00	0.00	0.00	1.85
2774	5899	2.611225	AGAATGATCTGTCCGCCTTC	57.389	50.000	0.00	0.00	33.59	3.46
2815	5940	2.817844	GCTTTAACCGGAGTTGGAACAT	59.182	45.455	9.46	0.00	39.30	2.71
2924	7218	1.262683	GATTAGCAGCGACTTCATGGC	59.737	52.381	0.00	0.00	0.00	4.40
2936	7230	3.111838	CACTCAGCAGTACGATTAGCAG	58.888	50.000	0.00	0.00	0.00	4.24
2937	7231	2.492088	ACACTCAGCAGTACGATTAGCA	59.508	45.455	0.00	0.00	0.00	3.49
2938	7232	2.854777	CACACTCAGCAGTACGATTAGC	59.145	50.000	0.00	0.00	0.00	3.09
2939	7233	3.119459	ACCACACTCAGCAGTACGATTAG	60.119	47.826	0.00	0.00	0.00	1.73
2940	7234	2.823747	ACCACACTCAGCAGTACGATTA	59.176	45.455	0.00	0.00	0.00	1.75
2945	7239	2.233922	ACCATACCACACTCAGCAGTAC	59.766	50.000	0.00	0.00	0.00	2.73
2954	7248	0.605319	CCGCAACACCATACCACACT	60.605	55.000	0.00	0.00	0.00	3.55
2974	7268	6.753897	GAAAATAATTTCATCATGGGCGTC	57.246	37.500	0.00	0.00	43.62	5.19
3009	7303	5.244785	CATTATCACATGCAAAGAGCTGT	57.755	39.130	0.00	0.00	45.94	4.40
3032	7326	0.745845	CTCCAGTTCGGCATCAAGGG	60.746	60.000	0.00	0.00	33.14	3.95
3054	7348	2.964978	GCGAGGCCTTGTTTGCAT	59.035	55.556	21.55	0.00	0.00	3.96
3142	7436	3.192633	GGTTCCGTTCAGTGGCATTAATT	59.807	43.478	0.00	0.00	0.00	1.40
3144	7438	2.156098	GGTTCCGTTCAGTGGCATTAA	58.844	47.619	0.00	0.00	0.00	1.40
3145	7439	1.816074	GGTTCCGTTCAGTGGCATTA	58.184	50.000	0.00	0.00	0.00	1.90
3146	7440	1.234615	CGGTTCCGTTCAGTGGCATT	61.235	55.000	2.82	0.00	0.00	3.56
3147	7441	1.671054	CGGTTCCGTTCAGTGGCAT	60.671	57.895	2.82	0.00	0.00	4.40
3148	7442	2.280524	CGGTTCCGTTCAGTGGCA	60.281	61.111	2.82	0.00	0.00	4.92
3159	7453	3.310860	ATGTGCCTCGACCGGTTCC	62.311	63.158	9.42	0.00	0.00	3.62
3201	7495	9.052365	AGATCTCCCTATCAACTTTTAACTTCT	57.948	33.333	0.00	0.00	0.00	2.85
3204	7498	8.380742	TGAGATCTCCCTATCAACTTTTAACT	57.619	34.615	20.03	0.00	0.00	2.24
3239	7533	9.234827	ACTAACTTTATTTTTGGTACGGCTAAT	57.765	29.630	0.00	0.00	0.00	1.73
3240	7534	8.620116	ACTAACTTTATTTTTGGTACGGCTAA	57.380	30.769	0.00	0.00	0.00	3.09
3283	7577	2.348888	CCGAGGAGTACAACGCCCT	61.349	63.158	0.00	0.00	39.00	5.19
3284	7578	2.183555	CCGAGGAGTACAACGCCC	59.816	66.667	0.00	0.00	39.00	6.13
3288	7582	1.153881	GCGGTCCGAGGAGTACAAC	60.154	63.158	17.49	0.00	0.00	3.32
3300	7594	2.433664	CTAACCACACCGCGGTCC	60.434	66.667	31.80	0.00	34.99	4.46
3304	7598	2.125673	CCTCCTAACCACACCGCG	60.126	66.667	0.00	0.00	0.00	6.46
3327	7621	3.725740	GCACAAGTTCACAATTTCGTCTG	59.274	43.478	0.00	0.00	0.00	3.51
3331	7625	3.486841	CCTTGCACAAGTTCACAATTTCG	59.513	43.478	9.41	0.00	36.72	3.46
3355	7649	5.045942	TCTCATTACTTAAGGTGGTGCATCA	60.046	40.000	7.53	0.00	0.00	3.07
3357	7651	5.435686	TCTCATTACTTAAGGTGGTGCAT	57.564	39.130	7.53	0.00	0.00	3.96
3360	7654	5.368989	GGGATCTCATTACTTAAGGTGGTG	58.631	45.833	7.53	0.67	0.00	4.17
3390	7684	3.791749	TTTTTGTGGGGGAGGGGT	58.208	55.556	0.00	0.00	0.00	4.95
3406	7700	0.320697	CCGTCGTCTCCCTCCTTTTT	59.679	55.000	0.00	0.00	0.00	1.94
3407	7701	1.542187	CCCGTCGTCTCCCTCCTTTT	61.542	60.000	0.00	0.00	0.00	2.27
3408	7702	1.982938	CCCGTCGTCTCCCTCCTTT	60.983	63.158	0.00	0.00	0.00	3.11
3409	7703	2.362632	CCCGTCGTCTCCCTCCTT	60.363	66.667	0.00	0.00	0.00	3.36
3410	7704	3.221193	AACCCGTCGTCTCCCTCCT	62.221	63.158	0.00	0.00	0.00	3.69
3411	7705	2.679287	AACCCGTCGTCTCCCTCC	60.679	66.667	0.00	0.00	0.00	4.30
3412	7706	1.813728	AACAACCCGTCGTCTCCCTC	61.814	60.000	0.00	0.00	0.00	4.30
3413	7707	1.835712	AACAACCCGTCGTCTCCCT	60.836	57.895	0.00	0.00	0.00	4.20
3414	7708	1.666872	CAACAACCCGTCGTCTCCC	60.667	63.158	0.00	0.00	0.00	4.30
3415	7709	0.942884	GACAACAACCCGTCGTCTCC	60.943	60.000	0.00	0.00	0.00	3.71
3416	7710	2.514267	GACAACAACCCGTCGTCTC	58.486	57.895	0.00	0.00	0.00	3.36
3417	7711	4.744316	GACAACAACCCGTCGTCT	57.256	55.556	0.00	0.00	0.00	4.18
3421	7715	2.113131	CTTGCCGACAACAACCCGTC	62.113	60.000	0.00	0.00	0.00	4.79
3422	7716	2.124653	TTGCCGACAACAACCCGT	60.125	55.556	0.00	0.00	0.00	5.28
3423	7717	2.637025	CTTGCCGACAACAACCCG	59.363	61.111	0.00	0.00	0.00	5.28
3424	7718	3.039134	CCTTGCCGACAACAACCC	58.961	61.111	0.00	0.00	0.00	4.11
3425	7719	2.335011	GCCTTGCCGACAACAACC	59.665	61.111	0.00	0.00	0.00	3.77
3426	7720	1.008538	CTGCCTTGCCGACAACAAC	60.009	57.895	0.00	0.00	0.00	3.32
3427	7721	2.844451	GCTGCCTTGCCGACAACAA	61.844	57.895	0.00	0.00	0.00	2.83
3428	7722	3.286751	GCTGCCTTGCCGACAACA	61.287	61.111	0.00	0.00	0.00	3.33
3429	7723	3.259425	CTGCTGCCTTGCCGACAAC	62.259	63.158	0.00	0.00	0.00	3.32
3430	7724	2.979676	CTGCTGCCTTGCCGACAA	60.980	61.111	0.00	0.00	0.00	3.18

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.