Multiple sequence alignment - TraesCS6D01G018100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G018100 chr6D 100.000 3255 0 0 1 3255 7425067 7421813 0.000000e+00 6011.0
1 TraesCS6D01G018100 chr6D 85.538 1376 173 14 974 2327 7651505 7652876 0.000000e+00 1415.0
2 TraesCS6D01G018100 chr6D 84.355 473 48 15 908 1360 24251842 24252308 1.070000e-119 440.0
3 TraesCS6D01G018100 chr6D 80.031 651 59 31 2337 2920 7475652 7475006 1.810000e-112 416.0
4 TraesCS6D01G018100 chr6D 83.534 249 18 7 2332 2557 7695332 7695580 9.150000e-51 211.0
5 TraesCS6D01G018100 chr6D 83.333 150 16 9 2906 3054 7695663 7695804 2.640000e-26 130.0
6 TraesCS6D01G018100 chr6D 79.730 148 18 6 2940 3085 7483353 7483216 2.670000e-16 97.1
7 TraesCS6D01G018100 chr6A 89.833 1200 110 7 965 2160 12420350 12421541 0.000000e+00 1530.0
8 TraesCS6D01G018100 chr6A 85.546 1273 144 24 913 2167 7977657 7978907 0.000000e+00 1295.0
9 TraesCS6D01G018100 chr6A 82.011 1223 174 24 1128 2330 7395468 7394272 0.000000e+00 998.0
10 TraesCS6D01G018100 chr6A 83.004 253 16 7 2332 2557 7982565 7982817 1.530000e-48 204.0
11 TraesCS6D01G018100 chr6A 96.552 58 2 0 2343 2400 7368886 7368829 2.670000e-16 97.1
12 TraesCS6D01G018100 chr6B 88.073 1308 122 19 908 2187 14323420 14324721 0.000000e+00 1520.0
13 TraesCS6D01G018100 chr6B 84.945 1448 186 14 908 2327 39310971 39312414 0.000000e+00 1437.0
14 TraesCS6D01G018100 chr6B 86.769 1232 137 17 944 2159 39326087 39327308 0.000000e+00 1349.0
15 TraesCS6D01G018100 chr6B 84.721 1381 168 25 908 2269 54402964 54401608 0.000000e+00 1341.0
16 TraesCS6D01G018100 chr6B 84.218 1394 175 31 966 2330 14455067 14453690 0.000000e+00 1314.0
17 TraesCS6D01G018100 chr6B 83.848 1393 181 30 795 2167 54422454 54421086 0.000000e+00 1286.0
18 TraesCS6D01G018100 chr6B 84.961 1270 150 27 944 2183 13934147 13932889 0.000000e+00 1249.0
19 TraesCS6D01G018100 chr6B 84.863 1242 156 19 964 2183 14311085 14312316 0.000000e+00 1223.0
20 TraesCS6D01G018100 chr6B 89.781 822 41 16 2331 3110 14325062 14325882 0.000000e+00 1013.0
21 TraesCS6D01G018100 chr6B 97.643 297 6 1 2438 2733 54401608 54401312 2.900000e-140 508.0
22 TraesCS6D01G018100 chr6B 79.779 633 63 28 2331 2920 13949554 13948944 1.820000e-107 399.0
23 TraesCS6D01G018100 chr4A 88.989 1217 115 9 964 2167 667380011 667381221 0.000000e+00 1487.0
24 TraesCS6D01G018100 chr4A 84.809 1231 148 27 945 2147 667425273 667426492 0.000000e+00 1201.0
25 TraesCS6D01G018100 chr4A 93.099 739 51 0 1 739 618017783 618017045 0.000000e+00 1083.0
26 TraesCS6D01G018100 chr7B 83.374 1215 141 37 803 1995 639982320 639983495 0.000000e+00 1068.0
27 TraesCS6D01G018100 chr1B 91.881 739 50 5 1 739 16301640 16302368 0.000000e+00 1024.0
28 TraesCS6D01G018100 chr1B 91.610 739 52 5 1 739 16267684 16268412 0.000000e+00 1013.0
29 TraesCS6D01G018100 chr1B 91.475 739 53 4 1 739 16290845 16291573 0.000000e+00 1007.0
30 TraesCS6D01G018100 chr1B 83.307 623 101 3 1 621 118113671 118114292 3.640000e-159 571.0
31 TraesCS6D01G018100 chr1B 93.033 244 17 0 496 739 16280187 16280430 1.110000e-94 357.0
32 TraesCS6D01G018100 chr1B 100.000 42 0 0 1 42 16280146 16280187 9.680000e-11 78.7
33 TraesCS6D01G018100 chr1B 90.741 54 3 2 612 664 58880951 58881003 1.620000e-08 71.3
34 TraesCS6D01G018100 chr5A 90.701 742 61 7 1 739 657511605 657512341 0.000000e+00 981.0
35 TraesCS6D01G018100 chr4B 83.552 687 111 2 1 686 636697345 636696660 2.740000e-180 641.0
36 TraesCS6D01G018100 chr5B 82.361 737 124 5 1 734 677905994 677906727 1.270000e-178 636.0
37 TraesCS6D01G018100 chr7A 84.314 153 24 0 1975 2127 607964440 607964288 2.020000e-32 150.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G018100 chr6D 7421813 7425067 3254 True 6011.0 6011 100.000 1 3255 1 chr6D.!!$R1 3254
1 TraesCS6D01G018100 chr6D 7651505 7652876 1371 False 1415.0 1415 85.538 974 2327 1 chr6D.!!$F1 1353
2 TraesCS6D01G018100 chr6D 7475006 7475652 646 True 416.0 416 80.031 2337 2920 1 chr6D.!!$R2 583
3 TraesCS6D01G018100 chr6A 12420350 12421541 1191 False 1530.0 1530 89.833 965 2160 1 chr6A.!!$F1 1195
4 TraesCS6D01G018100 chr6A 7394272 7395468 1196 True 998.0 998 82.011 1128 2330 1 chr6A.!!$R2 1202
5 TraesCS6D01G018100 chr6A 7977657 7982817 5160 False 749.5 1295 84.275 913 2557 2 chr6A.!!$F2 1644
6 TraesCS6D01G018100 chr6B 39310971 39312414 1443 False 1437.0 1437 84.945 908 2327 1 chr6B.!!$F2 1419
7 TraesCS6D01G018100 chr6B 39326087 39327308 1221 False 1349.0 1349 86.769 944 2159 1 chr6B.!!$F3 1215
8 TraesCS6D01G018100 chr6B 14453690 14455067 1377 True 1314.0 1314 84.218 966 2330 1 chr6B.!!$R3 1364
9 TraesCS6D01G018100 chr6B 54421086 54422454 1368 True 1286.0 1286 83.848 795 2167 1 chr6B.!!$R4 1372
10 TraesCS6D01G018100 chr6B 14323420 14325882 2462 False 1266.5 1520 88.927 908 3110 2 chr6B.!!$F4 2202
11 TraesCS6D01G018100 chr6B 13932889 13934147 1258 True 1249.0 1249 84.961 944 2183 1 chr6B.!!$R1 1239
12 TraesCS6D01G018100 chr6B 14311085 14312316 1231 False 1223.0 1223 84.863 964 2183 1 chr6B.!!$F1 1219
13 TraesCS6D01G018100 chr6B 54401312 54402964 1652 True 924.5 1341 91.182 908 2733 2 chr6B.!!$R5 1825
14 TraesCS6D01G018100 chr6B 13948944 13949554 610 True 399.0 399 79.779 2331 2920 1 chr6B.!!$R2 589
15 TraesCS6D01G018100 chr4A 667380011 667381221 1210 False 1487.0 1487 88.989 964 2167 1 chr4A.!!$F1 1203
16 TraesCS6D01G018100 chr4A 667425273 667426492 1219 False 1201.0 1201 84.809 945 2147 1 chr4A.!!$F2 1202
17 TraesCS6D01G018100 chr4A 618017045 618017783 738 True 1083.0 1083 93.099 1 739 1 chr4A.!!$R1 738
18 TraesCS6D01G018100 chr7B 639982320 639983495 1175 False 1068.0 1068 83.374 803 1995 1 chr7B.!!$F1 1192
19 TraesCS6D01G018100 chr1B 16301640 16302368 728 False 1024.0 1024 91.881 1 739 1 chr1B.!!$F3 738
20 TraesCS6D01G018100 chr1B 16267684 16268412 728 False 1013.0 1013 91.610 1 739 1 chr1B.!!$F1 738
21 TraesCS6D01G018100 chr1B 16290845 16291573 728 False 1007.0 1007 91.475 1 739 1 chr1B.!!$F2 738
22 TraesCS6D01G018100 chr1B 118113671 118114292 621 False 571.0 571 83.307 1 621 1 chr1B.!!$F5 620
23 TraesCS6D01G018100 chr5A 657511605 657512341 736 False 981.0 981 90.701 1 739 1 chr5A.!!$F1 738
24 TraesCS6D01G018100 chr4B 636696660 636697345 685 True 641.0 641 83.552 1 686 1 chr4B.!!$R1 685
25 TraesCS6D01G018100 chr5B 677905994 677906727 733 False 636.0 636 82.361 1 734 1 chr5B.!!$F1 733

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
52 53 0.179111 TCATTGTAAGCCTCGCTCGG 60.179 55.0 0.0 0.0 38.25 4.63 F
808 809 0.183014 TTTGGGGACGCTGTTTGGTA 59.817 50.0 0.0 0.0 0.00 3.25 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1662 1931 0.179065 GGGGCACACCTATACGTTCC 60.179 60.0 0.0 0.0 40.03 3.62 R
2319 2811 1.188863 AGCCCAGCCAATTCAACATC 58.811 50.0 0.0 0.0 0.00 3.06 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
52 53 0.179111 TCATTGTAAGCCTCGCTCGG 60.179 55.000 0.00 0.00 38.25 4.63
98 99 4.836825 CATCTTTGGACTGTGGTAGACAT 58.163 43.478 0.00 0.00 32.74 3.06
208 209 1.860484 GCTTCGCTTGCTTTGGCTCT 61.860 55.000 0.00 0.00 39.59 4.09
212 213 1.066215 TCGCTTGCTTTGGCTCTCATA 60.066 47.619 0.00 0.00 39.59 2.15
287 288 5.417580 GGGACAGATTTGTATGCCACTTAAA 59.582 40.000 0.00 0.00 37.76 1.52
336 337 2.671070 CGGACAACCCCTCTGCAT 59.329 61.111 0.00 0.00 0.00 3.96
337 338 1.746615 CGGACAACCCCTCTGCATG 60.747 63.158 0.00 0.00 0.00 4.06
341 342 0.706433 ACAACCCCTCTGCATGGATT 59.294 50.000 7.39 0.00 0.00 3.01
350 351 4.706476 CCCTCTGCATGGATTACAAAAAGA 59.294 41.667 7.39 0.00 0.00 2.52
351 352 5.361857 CCCTCTGCATGGATTACAAAAAGAT 59.638 40.000 7.39 0.00 0.00 2.40
413 414 2.218759 CACAAACTGTTCCGAGAAGTCG 59.781 50.000 0.00 0.00 46.39 4.18
434 435 3.682858 CGTCGTTCACCTTGATTTGGTAT 59.317 43.478 0.00 0.00 35.80 2.73
494 495 1.172812 GCCTGTCAAACCCGAGCTTT 61.173 55.000 0.00 0.00 0.00 3.51
532 533 0.395312 AACGACCACTCAACCCGATT 59.605 50.000 0.00 0.00 0.00 3.34
577 578 0.603975 ACCGCAGCAAACTCTTCCTC 60.604 55.000 0.00 0.00 0.00 3.71
619 620 2.810439 AAGTGCGAGATCTCATAGGC 57.190 50.000 22.31 16.74 0.00 3.93
659 660 0.331278 TCAATCTCCCCGGCACAAAT 59.669 50.000 0.00 0.00 0.00 2.32
686 687 7.094377 GCACTTTGGTTACCTGAAATTATCTGA 60.094 37.037 2.07 0.00 0.00 3.27
689 690 6.636454 TGGTTACCTGAAATTATCTGAGGT 57.364 37.500 2.07 0.00 37.94 3.85
699 700 8.635765 TGAAATTATCTGAGGTAAAACAAGCT 57.364 30.769 0.00 0.00 0.00 3.74
700 701 9.077885 TGAAATTATCTGAGGTAAAACAAGCTT 57.922 29.630 0.00 0.00 0.00 3.74
701 702 9.346725 GAAATTATCTGAGGTAAAACAAGCTTG 57.653 33.333 24.84 24.84 0.00 4.01
702 703 8.635765 AATTATCTGAGGTAAAACAAGCTTGA 57.364 30.769 32.50 7.52 0.00 3.02
703 704 7.672983 TTATCTGAGGTAAAACAAGCTTGAG 57.327 36.000 32.50 15.53 0.00 3.02
704 705 4.389374 TCTGAGGTAAAACAAGCTTGAGG 58.611 43.478 32.50 7.12 0.00 3.86
705 706 2.884639 TGAGGTAAAACAAGCTTGAGGC 59.115 45.455 32.50 15.91 42.19 4.70
713 714 1.065854 ACAAGCTTGAGGCGATTAGCT 60.066 47.619 32.50 2.52 45.35 3.32
714 715 2.168521 ACAAGCTTGAGGCGATTAGCTA 59.831 45.455 32.50 0.00 42.79 3.32
715 716 2.799412 CAAGCTTGAGGCGATTAGCTAG 59.201 50.000 22.31 0.00 42.79 3.42
716 717 2.224161 AAGCTTGAGGCGATTAGCTAGG 60.224 50.000 0.00 0.00 42.79 3.02
717 718 4.507956 AAGCTTGAGGCGATTAGCTAGGA 61.508 47.826 0.00 0.00 42.79 2.94
718 719 6.533214 AAGCTTGAGGCGATTAGCTAGGAC 62.533 50.000 0.00 0.00 42.79 3.85
724 725 3.454371 GCGATTAGCTAGGACTTTGGA 57.546 47.619 0.00 0.00 44.04 3.53
725 726 3.996480 GCGATTAGCTAGGACTTTGGAT 58.004 45.455 0.00 0.00 44.04 3.41
726 727 5.135508 GCGATTAGCTAGGACTTTGGATA 57.864 43.478 0.00 0.00 44.04 2.59
727 728 5.725362 GCGATTAGCTAGGACTTTGGATAT 58.275 41.667 0.00 0.00 44.04 1.63
728 729 5.578727 GCGATTAGCTAGGACTTTGGATATG 59.421 44.000 0.00 0.00 44.04 1.78
729 730 6.572509 GCGATTAGCTAGGACTTTGGATATGA 60.573 42.308 0.00 0.00 44.04 2.15
730 731 7.551585 CGATTAGCTAGGACTTTGGATATGAT 58.448 38.462 0.00 0.00 0.00 2.45
731 732 7.704472 CGATTAGCTAGGACTTTGGATATGATC 59.296 40.741 0.00 0.00 0.00 2.92
732 733 8.677870 ATTAGCTAGGACTTTGGATATGATCT 57.322 34.615 0.00 0.00 0.00 2.75
733 734 8.497910 TTAGCTAGGACTTTGGATATGATCTT 57.502 34.615 0.00 0.00 0.00 2.40
734 735 9.601810 TTAGCTAGGACTTTGGATATGATCTTA 57.398 33.333 0.00 0.00 0.00 2.10
735 736 8.677870 AGCTAGGACTTTGGATATGATCTTAT 57.322 34.615 0.89 0.89 0.00 1.73
736 737 9.775539 AGCTAGGACTTTGGATATGATCTTATA 57.224 33.333 1.30 0.00 0.00 0.98
737 738 9.810545 GCTAGGACTTTGGATATGATCTTATAC 57.189 37.037 4.23 4.23 0.00 1.47
741 742 9.606631 GGACTTTGGATATGATCTTATACATCC 57.393 37.037 12.94 12.82 0.00 3.51
743 744 9.950496 ACTTTGGATATGATCTTATACATCCAC 57.050 33.333 12.94 0.00 0.00 4.02
746 747 8.311395 TGGATATGATCTTATACATCCACTCC 57.689 38.462 9.02 2.02 0.00 3.85
747 748 7.345653 TGGATATGATCTTATACATCCACTCCC 59.654 40.741 9.02 0.76 0.00 4.30
748 749 5.667539 ATGATCTTATACATCCACTCCCG 57.332 43.478 0.00 0.00 0.00 5.14
749 750 3.832490 TGATCTTATACATCCACTCCCGG 59.168 47.826 0.00 0.00 0.00 5.73
750 751 1.968493 TCTTATACATCCACTCCCGGC 59.032 52.381 0.00 0.00 0.00 6.13
751 752 1.002087 CTTATACATCCACTCCCGGCC 59.998 57.143 0.00 0.00 0.00 6.13
752 753 0.190069 TATACATCCACTCCCGGCCT 59.810 55.000 0.00 0.00 0.00 5.19
753 754 1.410850 ATACATCCACTCCCGGCCTG 61.411 60.000 0.00 0.00 0.00 4.85
754 755 2.815684 TACATCCACTCCCGGCCTGT 62.816 60.000 0.00 0.00 0.00 4.00
755 756 2.610859 ATCCACTCCCGGCCTGTT 60.611 61.111 0.00 0.00 0.00 3.16
756 757 2.231380 ATCCACTCCCGGCCTGTTT 61.231 57.895 0.00 0.00 0.00 2.83
757 758 1.789576 ATCCACTCCCGGCCTGTTTT 61.790 55.000 0.00 0.00 0.00 2.43
758 759 1.530655 CCACTCCCGGCCTGTTTTT 60.531 57.895 0.00 0.00 0.00 1.94
759 760 0.250989 CCACTCCCGGCCTGTTTTTA 60.251 55.000 0.00 0.00 0.00 1.52
760 761 1.165270 CACTCCCGGCCTGTTTTTAG 58.835 55.000 0.00 0.00 0.00 1.85
761 762 0.769247 ACTCCCGGCCTGTTTTTAGT 59.231 50.000 0.00 0.00 0.00 2.24
762 763 1.980036 ACTCCCGGCCTGTTTTTAGTA 59.020 47.619 0.00 0.00 0.00 1.82
763 764 2.027469 ACTCCCGGCCTGTTTTTAGTAG 60.027 50.000 0.00 0.00 0.00 2.57
764 765 1.279846 TCCCGGCCTGTTTTTAGTAGG 59.720 52.381 0.00 0.00 34.67 3.18
775 776 7.873739 CTGTTTTTAGTAGGCAGGAAAAATG 57.126 36.000 0.00 0.00 34.36 2.32
776 777 7.589958 TGTTTTTAGTAGGCAGGAAAAATGA 57.410 32.000 0.00 0.00 34.36 2.57
777 778 8.012957 TGTTTTTAGTAGGCAGGAAAAATGAA 57.987 30.769 0.00 0.00 34.36 2.57
778 779 8.478877 TGTTTTTAGTAGGCAGGAAAAATGAAA 58.521 29.630 0.00 0.00 34.36 2.69
779 780 9.489084 GTTTTTAGTAGGCAGGAAAAATGAAAT 57.511 29.630 0.00 0.00 34.36 2.17
781 782 9.705290 TTTTAGTAGGCAGGAAAAATGAAATTC 57.295 29.630 0.00 0.00 33.67 2.17
782 783 6.286240 AGTAGGCAGGAAAAATGAAATTCC 57.714 37.500 0.00 0.00 44.45 3.01
793 794 8.227119 GGAAAAATGAAATTCCGTTATGTTTGG 58.773 33.333 0.00 0.00 33.67 3.28
794 795 7.665561 AAAATGAAATTCCGTTATGTTTGGG 57.334 32.000 0.00 0.00 33.67 4.12
795 796 4.792521 TGAAATTCCGTTATGTTTGGGG 57.207 40.909 0.00 0.00 0.00 4.96
796 797 4.408276 TGAAATTCCGTTATGTTTGGGGA 58.592 39.130 0.00 0.00 0.00 4.81
797 798 4.218852 TGAAATTCCGTTATGTTTGGGGAC 59.781 41.667 0.00 0.00 0.00 4.46
798 799 1.810959 TTCCGTTATGTTTGGGGACG 58.189 50.000 0.00 0.00 0.00 4.79
799 800 0.674269 TCCGTTATGTTTGGGGACGC 60.674 55.000 0.00 0.00 32.78 5.19
800 801 0.675522 CCGTTATGTTTGGGGACGCT 60.676 55.000 0.00 0.00 32.78 5.07
801 802 0.446222 CGTTATGTTTGGGGACGCTG 59.554 55.000 0.00 0.00 0.00 5.18
802 803 1.530323 GTTATGTTTGGGGACGCTGT 58.470 50.000 0.00 0.00 0.00 4.40
803 804 1.883926 GTTATGTTTGGGGACGCTGTT 59.116 47.619 0.00 0.00 0.00 3.16
804 805 2.279935 TATGTTTGGGGACGCTGTTT 57.720 45.000 0.00 0.00 0.00 2.83
805 806 0.673437 ATGTTTGGGGACGCTGTTTG 59.327 50.000 0.00 0.00 0.00 2.93
806 807 1.362355 GTTTGGGGACGCTGTTTGG 59.638 57.895 0.00 0.00 0.00 3.28
807 808 1.076632 TTTGGGGACGCTGTTTGGT 60.077 52.632 0.00 0.00 0.00 3.67
808 809 0.183014 TTTGGGGACGCTGTTTGGTA 59.817 50.000 0.00 0.00 0.00 3.25
809 810 0.402504 TTGGGGACGCTGTTTGGTAT 59.597 50.000 0.00 0.00 0.00 2.73
813 814 1.612199 GGGACGCTGTTTGGTATTGGA 60.612 52.381 0.00 0.00 0.00 3.53
817 818 3.153919 ACGCTGTTTGGTATTGGACAAT 58.846 40.909 2.80 2.80 34.93 2.71
851 852 0.620556 AGGCCGTTGGATGACATCTT 59.379 50.000 14.95 0.00 0.00 2.40
874 875 0.746659 GGCAGGTATTGGATGGCAAC 59.253 55.000 0.00 0.00 39.18 4.17
875 876 0.381801 GCAGGTATTGGATGGCAACG 59.618 55.000 0.00 0.00 42.51 4.10
888 889 0.306533 GGCAACGTCGCTCAGAAAAA 59.693 50.000 0.00 0.00 0.00 1.94
889 890 1.660333 GGCAACGTCGCTCAGAAAAAG 60.660 52.381 0.00 0.00 0.00 2.27
891 892 2.220133 GCAACGTCGCTCAGAAAAAGTA 59.780 45.455 0.00 0.00 0.00 2.24
892 893 3.302870 GCAACGTCGCTCAGAAAAAGTAA 60.303 43.478 0.00 0.00 0.00 2.24
893 894 4.201576 CAACGTCGCTCAGAAAAAGTAAC 58.798 43.478 0.00 0.00 0.00 2.50
895 896 4.863491 ACGTCGCTCAGAAAAAGTAACTA 58.137 39.130 0.00 0.00 0.00 2.24
896 897 4.916249 ACGTCGCTCAGAAAAAGTAACTAG 59.084 41.667 0.00 0.00 0.00 2.57
897 898 5.152097 CGTCGCTCAGAAAAAGTAACTAGA 58.848 41.667 0.00 0.00 0.00 2.43
898 899 5.284188 CGTCGCTCAGAAAAAGTAACTAGAG 59.716 44.000 0.00 0.00 0.00 2.43
899 900 6.380190 GTCGCTCAGAAAAAGTAACTAGAGA 58.620 40.000 0.00 0.00 0.00 3.10
900 901 6.862090 GTCGCTCAGAAAAAGTAACTAGAGAA 59.138 38.462 0.00 0.00 0.00 2.87
901 902 7.381678 GTCGCTCAGAAAAAGTAACTAGAGAAA 59.618 37.037 0.00 0.00 0.00 2.52
902 903 8.088981 TCGCTCAGAAAAAGTAACTAGAGAAAT 58.911 33.333 0.00 0.00 0.00 2.17
904 905 8.661257 GCTCAGAAAAAGTAACTAGAGAAATCC 58.339 37.037 0.00 0.00 0.00 3.01
905 906 9.936759 CTCAGAAAAAGTAACTAGAGAAATCCT 57.063 33.333 0.00 0.00 0.00 3.24
923 924 3.556306 CCCGTCCACCACACCACT 61.556 66.667 0.00 0.00 0.00 4.00
959 965 1.380380 CTGCCACTGGAATTCCCCC 60.380 63.158 21.90 6.08 34.29 5.40
960 966 2.153898 CTGCCACTGGAATTCCCCCA 62.154 60.000 21.90 10.06 34.29 4.96
962 968 1.773635 CCACTGGAATTCCCCCACA 59.226 57.895 21.90 1.46 34.29 4.17
1045 1065 3.237741 CCCATCTCCTCTCCGGCC 61.238 72.222 0.00 0.00 0.00 6.13
1068 1088 1.224592 CATTCCTTCCACCTCCCCG 59.775 63.158 0.00 0.00 0.00 5.73
1075 1104 4.087892 CCACCTCCCCGCTCTGTG 62.088 72.222 0.00 0.00 0.00 3.66
1088 1117 4.767255 CTGTGTCCAGCGCCTCCC 62.767 72.222 2.29 0.00 0.00 4.30
1295 1336 3.382832 CCTCGTCGCCAAGGACCT 61.383 66.667 0.00 0.00 34.35 3.85
1395 1436 3.736482 AATCGCGCGACTCGTCTCC 62.736 63.158 37.37 0.00 41.07 3.71
1741 2010 2.166459 TCATACTTGAGCGAGGACAAGG 59.834 50.000 0.00 0.00 45.03 3.61
1791 2060 6.440647 AGAAGACATTTAGGTGGTCAGATACA 59.559 38.462 0.00 0.00 34.04 2.29
2214 2669 4.627900 GGAAGAACAGAATTTCTCTCGTCC 59.372 45.833 17.06 17.06 34.60 4.79
2218 2673 7.883391 AGAACAGAATTTCTCTCGTCCTATA 57.117 36.000 0.00 0.00 29.24 1.31
2278 2769 2.594592 GGTGGCTTTGTCGTGGCT 60.595 61.111 0.00 0.00 0.00 4.75
2285 2776 1.202076 GCTTTGTCGTGGCTAATGCTC 60.202 52.381 0.00 0.00 39.59 4.26
2297 2788 3.491267 GGCTAATGCTCGATGTAACTGAC 59.509 47.826 0.00 0.00 39.59 3.51
2319 2811 4.823989 ACAACTTGATTTCTGAACCCTGAG 59.176 41.667 0.00 0.00 0.00 3.35
2412 6453 3.209410 GAAGCTGCCAATACTATGCTGT 58.791 45.455 0.00 0.00 0.00 4.40
2413 6454 3.287867 AGCTGCCAATACTATGCTGTT 57.712 42.857 0.00 0.00 0.00 3.16
2570 6660 9.499479 TTTTCTGAAGCTGATATCTTGGATATC 57.501 33.333 16.28 16.28 0.00 1.63
2597 6688 0.183492 TATAGCTTGGCCTGCCTTGG 59.817 55.000 15.80 0.92 36.94 3.61
2743 6835 2.858344 CTGTCGTCTTAATAGGTTGGCG 59.142 50.000 0.00 0.00 0.00 5.69
2746 6838 1.850441 CGTCTTAATAGGTTGGCGTCG 59.150 52.381 0.00 0.00 0.00 5.12
2756 6848 0.108804 GTTGGCGTCGAGGATCAGAA 60.109 55.000 9.75 0.00 33.17 3.02
2776 6895 2.443416 ACGGTAGATGCGGCAGATATA 58.557 47.619 9.25 0.00 0.00 0.86
2790 6909 6.309251 GCGGCAGATATAAGAAGAGTGAATAC 59.691 42.308 0.00 0.00 0.00 1.89
2792 6911 7.309499 CGGCAGATATAAGAAGAGTGAATACCT 60.309 40.741 0.00 0.00 0.00 3.08
2908 7034 1.339929 GGATTTGGTCGGTGTGCTTTT 59.660 47.619 0.00 0.00 0.00 2.27
2920 7046 4.201802 CGGTGTGCTTTTTGCTTTGATTTT 60.202 37.500 0.00 0.00 43.37 1.82
2921 7047 5.639757 GGTGTGCTTTTTGCTTTGATTTTT 58.360 33.333 0.00 0.00 43.37 1.94
2997 7123 2.095567 GCCACCTGCGCATAATATTCAG 60.096 50.000 12.24 0.00 0.00 3.02
2999 7125 4.005650 CCACCTGCGCATAATATTCAGAT 58.994 43.478 12.24 0.00 0.00 2.90
3096 7222 6.250711 ACCCTTCCATAAGTATTTTTCCGTT 58.749 36.000 0.00 0.00 0.00 4.44
3110 7236 6.817765 TTTTTCCGTTCAGAGCTAATGATT 57.182 33.333 2.15 0.00 0.00 2.57
3111 7237 5.801350 TTTCCGTTCAGAGCTAATGATTG 57.199 39.130 2.15 0.00 0.00 2.67
3112 7238 3.797039 TCCGTTCAGAGCTAATGATTGG 58.203 45.455 2.15 7.31 0.00 3.16
3113 7239 3.450817 TCCGTTCAGAGCTAATGATTGGA 59.549 43.478 13.78 13.78 31.56 3.53
3114 7240 3.806521 CCGTTCAGAGCTAATGATTGGAG 59.193 47.826 11.29 0.00 0.00 3.86
3115 7241 4.442052 CCGTTCAGAGCTAATGATTGGAGA 60.442 45.833 11.29 0.00 0.00 3.71
3116 7242 4.744137 CGTTCAGAGCTAATGATTGGAGAG 59.256 45.833 2.15 0.00 0.00 3.20
3117 7243 4.952071 TCAGAGCTAATGATTGGAGAGG 57.048 45.455 0.00 0.00 0.00 3.69
3118 7244 4.293494 TCAGAGCTAATGATTGGAGAGGT 58.707 43.478 0.00 0.00 0.00 3.85
3119 7245 4.343526 TCAGAGCTAATGATTGGAGAGGTC 59.656 45.833 0.00 0.00 35.40 3.85
3120 7246 3.645687 AGAGCTAATGATTGGAGAGGTCC 59.354 47.826 0.00 0.00 44.24 4.46
3128 7254 4.303257 GGAGAGGTCCGGCTTTTG 57.697 61.111 0.00 0.00 31.37 2.44
3129 7255 1.375326 GGAGAGGTCCGGCTTTTGT 59.625 57.895 0.00 0.00 31.37 2.83
3130 7256 0.250770 GGAGAGGTCCGGCTTTTGTT 60.251 55.000 0.00 0.00 31.37 2.83
3131 7257 1.605753 GAGAGGTCCGGCTTTTGTTT 58.394 50.000 0.00 0.00 0.00 2.83
3132 7258 1.535896 GAGAGGTCCGGCTTTTGTTTC 59.464 52.381 0.00 0.00 0.00 2.78
3133 7259 0.596577 GAGGTCCGGCTTTTGTTTCC 59.403 55.000 0.00 0.00 0.00 3.13
3134 7260 0.826256 AGGTCCGGCTTTTGTTTCCC 60.826 55.000 0.00 0.00 0.00 3.97
3135 7261 0.826256 GGTCCGGCTTTTGTTTCCCT 60.826 55.000 0.00 0.00 0.00 4.20
3136 7262 0.313987 GTCCGGCTTTTGTTTCCCTG 59.686 55.000 0.00 0.00 0.00 4.45
3137 7263 0.183971 TCCGGCTTTTGTTTCCCTGA 59.816 50.000 0.00 0.00 0.00 3.86
3138 7264 1.203001 TCCGGCTTTTGTTTCCCTGAT 60.203 47.619 0.00 0.00 0.00 2.90
3139 7265 1.618343 CCGGCTTTTGTTTCCCTGATT 59.382 47.619 0.00 0.00 0.00 2.57
3140 7266 2.037121 CCGGCTTTTGTTTCCCTGATTT 59.963 45.455 0.00 0.00 0.00 2.17
3141 7267 3.494223 CCGGCTTTTGTTTCCCTGATTTT 60.494 43.478 0.00 0.00 0.00 1.82
3142 7268 4.126437 CGGCTTTTGTTTCCCTGATTTTT 58.874 39.130 0.00 0.00 0.00 1.94
3166 7292 4.753516 TCAGATAAATGAGAAGCGGGAA 57.246 40.909 0.00 0.00 0.00 3.97
3167 7293 4.442706 TCAGATAAATGAGAAGCGGGAAC 58.557 43.478 0.00 0.00 0.00 3.62
3168 7294 4.081142 TCAGATAAATGAGAAGCGGGAACA 60.081 41.667 0.00 0.00 0.00 3.18
3169 7295 4.635765 CAGATAAATGAGAAGCGGGAACAA 59.364 41.667 0.00 0.00 0.00 2.83
3170 7296 4.878397 AGATAAATGAGAAGCGGGAACAAG 59.122 41.667 0.00 0.00 0.00 3.16
3171 7297 2.568623 AATGAGAAGCGGGAACAAGT 57.431 45.000 0.00 0.00 0.00 3.16
3172 7298 2.568623 ATGAGAAGCGGGAACAAGTT 57.431 45.000 0.00 0.00 0.00 2.66
3173 7299 3.695830 ATGAGAAGCGGGAACAAGTTA 57.304 42.857 0.00 0.00 0.00 2.24
3174 7300 3.478857 TGAGAAGCGGGAACAAGTTAA 57.521 42.857 0.00 0.00 0.00 2.01
3175 7301 3.811083 TGAGAAGCGGGAACAAGTTAAA 58.189 40.909 0.00 0.00 0.00 1.52
3176 7302 4.394729 TGAGAAGCGGGAACAAGTTAAAT 58.605 39.130 0.00 0.00 0.00 1.40
3177 7303 5.553123 TGAGAAGCGGGAACAAGTTAAATA 58.447 37.500 0.00 0.00 0.00 1.40
3178 7304 6.177610 TGAGAAGCGGGAACAAGTTAAATAT 58.822 36.000 0.00 0.00 0.00 1.28
3179 7305 6.093495 TGAGAAGCGGGAACAAGTTAAATATG 59.907 38.462 0.00 0.00 0.00 1.78
3180 7306 6.177610 AGAAGCGGGAACAAGTTAAATATGA 58.822 36.000 0.00 0.00 0.00 2.15
3181 7307 6.316390 AGAAGCGGGAACAAGTTAAATATGAG 59.684 38.462 0.00 0.00 0.00 2.90
3182 7308 5.741011 AGCGGGAACAAGTTAAATATGAGA 58.259 37.500 0.00 0.00 0.00 3.27
3183 7309 5.817816 AGCGGGAACAAGTTAAATATGAGAG 59.182 40.000 0.00 0.00 0.00 3.20
3184 7310 5.815740 GCGGGAACAAGTTAAATATGAGAGA 59.184 40.000 0.00 0.00 0.00 3.10
3185 7311 6.315393 GCGGGAACAAGTTAAATATGAGAGAA 59.685 38.462 0.00 0.00 0.00 2.87
3186 7312 7.466050 GCGGGAACAAGTTAAATATGAGAGAAG 60.466 40.741 0.00 0.00 0.00 2.85
3187 7313 7.011482 CGGGAACAAGTTAAATATGAGAGAAGG 59.989 40.741 0.00 0.00 0.00 3.46
3188 7314 8.047310 GGGAACAAGTTAAATATGAGAGAAGGA 58.953 37.037 0.00 0.00 0.00 3.36
3189 7315 9.620259 GGAACAAGTTAAATATGAGAGAAGGAT 57.380 33.333 0.00 0.00 0.00 3.24
3191 7317 8.970859 ACAAGTTAAATATGAGAGAAGGATGG 57.029 34.615 0.00 0.00 0.00 3.51
3192 7318 8.552296 ACAAGTTAAATATGAGAGAAGGATGGT 58.448 33.333 0.00 0.00 0.00 3.55
3195 7321 9.440761 AGTTAAATATGAGAGAAGGATGGTACT 57.559 33.333 0.00 0.00 0.00 2.73
3196 7322 9.482627 GTTAAATATGAGAGAAGGATGGTACTG 57.517 37.037 0.00 0.00 0.00 2.74
3197 7323 7.921041 AAATATGAGAGAAGGATGGTACTGA 57.079 36.000 0.00 0.00 0.00 3.41
3198 7324 8.503428 AAATATGAGAGAAGGATGGTACTGAT 57.497 34.615 0.00 0.00 0.00 2.90
3199 7325 8.503428 AATATGAGAGAAGGATGGTACTGATT 57.497 34.615 0.00 0.00 0.00 2.57
3200 7326 5.860941 TGAGAGAAGGATGGTACTGATTC 57.139 43.478 0.00 0.00 0.00 2.52
3201 7327 5.523588 TGAGAGAAGGATGGTACTGATTCT 58.476 41.667 0.00 0.00 0.00 2.40
3202 7328 5.362143 TGAGAGAAGGATGGTACTGATTCTG 59.638 44.000 0.00 0.00 0.00 3.02
3203 7329 5.523588 AGAGAAGGATGGTACTGATTCTGA 58.476 41.667 0.00 0.00 0.00 3.27
3204 7330 5.598005 AGAGAAGGATGGTACTGATTCTGAG 59.402 44.000 0.00 0.00 0.00 3.35
3205 7331 5.276440 AGAAGGATGGTACTGATTCTGAGT 58.724 41.667 0.00 0.00 0.00 3.41
3206 7332 6.436027 AGAAGGATGGTACTGATTCTGAGTA 58.564 40.000 0.00 0.00 0.00 2.59
3207 7333 6.549364 AGAAGGATGGTACTGATTCTGAGTAG 59.451 42.308 0.00 0.00 0.00 2.57
3208 7334 6.019656 AGGATGGTACTGATTCTGAGTAGA 57.980 41.667 0.00 0.00 0.00 2.59
3209 7335 5.830991 AGGATGGTACTGATTCTGAGTAGAC 59.169 44.000 0.00 0.00 31.21 2.59
3210 7336 5.830991 GGATGGTACTGATTCTGAGTAGACT 59.169 44.000 0.00 0.00 31.21 3.24
3211 7337 6.322712 GGATGGTACTGATTCTGAGTAGACTT 59.677 42.308 0.00 0.00 31.21 3.01
3212 7338 6.761099 TGGTACTGATTCTGAGTAGACTTC 57.239 41.667 0.00 0.00 31.21 3.01
3213 7339 6.486056 TGGTACTGATTCTGAGTAGACTTCT 58.514 40.000 0.00 0.00 31.21 2.85
3214 7340 6.375736 TGGTACTGATTCTGAGTAGACTTCTG 59.624 42.308 0.00 0.00 31.21 3.02
3215 7341 6.600032 GGTACTGATTCTGAGTAGACTTCTGA 59.400 42.308 0.00 0.00 31.21 3.27
3216 7342 7.284489 GGTACTGATTCTGAGTAGACTTCTGAT 59.716 40.741 0.00 0.00 31.21 2.90
3217 7343 7.099266 ACTGATTCTGAGTAGACTTCTGATG 57.901 40.000 0.00 0.00 31.21 3.07
3218 7344 6.889177 ACTGATTCTGAGTAGACTTCTGATGA 59.111 38.462 0.00 0.00 31.21 2.92
3219 7345 7.067372 ACTGATTCTGAGTAGACTTCTGATGAG 59.933 40.741 0.00 0.00 31.21 2.90
3220 7346 7.115414 TGATTCTGAGTAGACTTCTGATGAGA 58.885 38.462 0.00 0.00 31.21 3.27
3221 7347 7.282901 TGATTCTGAGTAGACTTCTGATGAGAG 59.717 40.741 0.00 0.00 31.21 3.20
3222 7348 6.306643 TCTGAGTAGACTTCTGATGAGAGA 57.693 41.667 0.00 0.00 0.00 3.10
3223 7349 6.716284 TCTGAGTAGACTTCTGATGAGAGAA 58.284 40.000 0.00 0.00 0.00 2.87
3224 7350 6.597672 TCTGAGTAGACTTCTGATGAGAGAAC 59.402 42.308 0.00 0.00 0.00 3.01
3225 7351 5.352846 TGAGTAGACTTCTGATGAGAGAACG 59.647 44.000 0.00 0.00 0.00 3.95
3226 7352 5.492895 AGTAGACTTCTGATGAGAGAACGA 58.507 41.667 0.00 0.00 0.00 3.85
3227 7353 6.119536 AGTAGACTTCTGATGAGAGAACGAT 58.880 40.000 0.00 0.00 0.00 3.73
3228 7354 5.499139 AGACTTCTGATGAGAGAACGATC 57.501 43.478 0.00 0.00 0.00 3.69
3229 7355 4.338118 AGACTTCTGATGAGAGAACGATCC 59.662 45.833 0.00 0.00 0.00 3.36
3230 7356 4.019858 ACTTCTGATGAGAGAACGATCCA 58.980 43.478 0.00 0.00 0.00 3.41
3231 7357 4.097741 ACTTCTGATGAGAGAACGATCCAG 59.902 45.833 0.00 0.00 0.00 3.86
3232 7358 2.360483 TCTGATGAGAGAACGATCCAGC 59.640 50.000 0.00 0.00 0.00 4.85
3233 7359 2.100418 CTGATGAGAGAACGATCCAGCA 59.900 50.000 0.00 0.00 0.00 4.41
3234 7360 2.497273 TGATGAGAGAACGATCCAGCAA 59.503 45.455 0.00 0.00 0.00 3.91
3235 7361 2.662006 TGAGAGAACGATCCAGCAAG 57.338 50.000 0.00 0.00 0.00 4.01
3236 7362 1.285578 GAGAGAACGATCCAGCAAGC 58.714 55.000 0.00 0.00 0.00 4.01
3237 7363 0.610174 AGAGAACGATCCAGCAAGCA 59.390 50.000 0.00 0.00 0.00 3.91
3238 7364 1.002430 AGAGAACGATCCAGCAAGCAA 59.998 47.619 0.00 0.00 0.00 3.91
3239 7365 2.012673 GAGAACGATCCAGCAAGCAAT 58.987 47.619 0.00 0.00 0.00 3.56
3240 7366 1.741706 AGAACGATCCAGCAAGCAATG 59.258 47.619 0.00 0.00 0.00 2.82
3241 7367 0.813184 AACGATCCAGCAAGCAATGG 59.187 50.000 0.00 0.00 37.97 3.16
3242 7368 0.322816 ACGATCCAGCAAGCAATGGT 60.323 50.000 0.00 0.00 41.41 3.55
3243 7369 1.065491 ACGATCCAGCAAGCAATGGTA 60.065 47.619 0.00 0.00 37.77 3.25
3244 7370 2.224606 CGATCCAGCAAGCAATGGTAT 58.775 47.619 0.00 0.00 37.77 2.73
3245 7371 2.620115 CGATCCAGCAAGCAATGGTATT 59.380 45.455 0.00 0.00 37.77 1.89
3246 7372 3.549423 CGATCCAGCAAGCAATGGTATTG 60.549 47.826 0.00 0.00 37.77 1.90
3247 7373 2.806434 TCCAGCAAGCAATGGTATTGT 58.194 42.857 3.77 0.00 37.77 2.71
3248 7374 3.164268 TCCAGCAAGCAATGGTATTGTT 58.836 40.909 3.77 0.00 37.77 2.83
3249 7375 3.193267 TCCAGCAAGCAATGGTATTGTTC 59.807 43.478 3.77 0.00 37.77 3.18
3250 7376 3.056678 CCAGCAAGCAATGGTATTGTTCA 60.057 43.478 3.77 0.00 37.77 3.18
3251 7377 4.171005 CAGCAAGCAATGGTATTGTTCAG 58.829 43.478 3.77 0.00 37.77 3.02
3252 7378 4.081406 AGCAAGCAATGGTATTGTTCAGA 58.919 39.130 3.77 0.00 38.18 3.27
3253 7379 4.157289 AGCAAGCAATGGTATTGTTCAGAG 59.843 41.667 3.77 0.00 38.18 3.35
3254 7380 4.082571 GCAAGCAATGGTATTGTTCAGAGT 60.083 41.667 3.77 0.00 0.00 3.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
98 99 2.162208 GGCGATCATGTTCAGCAAGAAA 59.838 45.455 16.71 0.00 38.13 2.52
260 261 0.663153 GCATACAAATCTGTCCCGGC 59.337 55.000 0.00 0.00 36.96 6.13
287 288 3.394836 GCCCAGCGGAGAGGAGTT 61.395 66.667 0.00 0.00 0.00 3.01
336 337 4.505808 TCGCCGTATCTTTTTGTAATCCA 58.494 39.130 0.00 0.00 0.00 3.41
337 338 5.668558 ATCGCCGTATCTTTTTGTAATCC 57.331 39.130 0.00 0.00 0.00 3.01
341 342 5.467399 CCCAATATCGCCGTATCTTTTTGTA 59.533 40.000 0.00 0.00 0.00 2.41
350 351 3.806591 CGACCCAATATCGCCGTAT 57.193 52.632 0.00 0.00 31.96 3.06
400 401 1.325647 GAACGACGACTTCTCGGAAC 58.674 55.000 0.00 0.00 44.80 3.62
413 414 4.935808 AGATACCAAATCAAGGTGAACGAC 59.064 41.667 0.00 0.00 40.26 4.34
442 443 4.903054 ACTTGTGATGAGATGTGTGACAT 58.097 39.130 0.00 0.00 42.43 3.06
453 454 3.070018 GTTGGGTGAGACTTGTGATGAG 58.930 50.000 0.00 0.00 0.00 2.90
494 495 4.051237 CGTTCCTCGAAGCAATGATGATA 58.949 43.478 0.00 0.00 42.86 2.15
532 533 6.439636 AGGTGGATATGAGCAAAGCTTATA 57.560 37.500 0.00 6.04 40.43 0.98
596 597 4.297510 CCTATGAGATCTCGCACTTTCTG 58.702 47.826 17.76 1.13 0.00 3.02
619 620 5.861727 TGATCACAGACAATATCCTGATGG 58.138 41.667 0.00 0.00 34.65 3.51
659 660 6.719370 AGATAATTTCAGGTAACCAAAGTGCA 59.281 34.615 0.00 0.00 37.17 4.57
686 687 1.880027 CGCCTCAAGCTTGTTTTACCT 59.120 47.619 25.19 0.00 40.39 3.08
689 690 4.142687 GCTAATCGCCTCAAGCTTGTTTTA 60.143 41.667 25.19 13.30 40.39 1.52
699 700 2.667470 AGTCCTAGCTAATCGCCTCAA 58.333 47.619 0.00 0.00 40.39 3.02
700 701 2.366640 AGTCCTAGCTAATCGCCTCA 57.633 50.000 0.00 0.00 40.39 3.86
701 702 3.385577 CAAAGTCCTAGCTAATCGCCTC 58.614 50.000 0.00 0.00 40.39 4.70
702 703 2.103263 CCAAAGTCCTAGCTAATCGCCT 59.897 50.000 0.00 0.00 40.39 5.52
703 704 2.102588 TCCAAAGTCCTAGCTAATCGCC 59.897 50.000 0.00 0.00 40.39 5.54
704 705 3.454371 TCCAAAGTCCTAGCTAATCGC 57.546 47.619 0.00 0.00 39.57 4.58
705 706 6.925211 TCATATCCAAAGTCCTAGCTAATCG 58.075 40.000 0.00 0.00 0.00 3.34
706 707 8.757877 AGATCATATCCAAAGTCCTAGCTAATC 58.242 37.037 0.00 0.00 0.00 1.75
707 708 8.677870 AGATCATATCCAAAGTCCTAGCTAAT 57.322 34.615 0.00 0.00 0.00 1.73
708 709 8.497910 AAGATCATATCCAAAGTCCTAGCTAA 57.502 34.615 0.00 0.00 0.00 3.09
709 710 9.775539 ATAAGATCATATCCAAAGTCCTAGCTA 57.224 33.333 0.00 0.00 0.00 3.32
710 711 8.677870 ATAAGATCATATCCAAAGTCCTAGCT 57.322 34.615 0.00 0.00 0.00 3.32
711 712 9.810545 GTATAAGATCATATCCAAAGTCCTAGC 57.189 37.037 0.00 0.00 0.00 3.42
715 716 9.606631 GGATGTATAAGATCATATCCAAAGTCC 57.393 37.037 0.00 0.00 35.35 3.85
717 718 9.950496 GTGGATGTATAAGATCATATCCAAAGT 57.050 33.333 9.82 0.00 43.86 2.66
720 721 8.762645 GGAGTGGATGTATAAGATCATATCCAA 58.237 37.037 9.82 0.00 43.86 3.53
721 722 7.345653 GGGAGTGGATGTATAAGATCATATCCA 59.654 40.741 5.45 5.45 41.11 3.41
722 723 7.470702 CGGGAGTGGATGTATAAGATCATATCC 60.471 44.444 0.00 0.00 35.72 2.59
723 724 7.429633 CGGGAGTGGATGTATAAGATCATATC 58.570 42.308 0.00 0.00 0.00 1.63
724 725 6.325028 CCGGGAGTGGATGTATAAGATCATAT 59.675 42.308 0.00 0.00 0.00 1.78
725 726 5.656859 CCGGGAGTGGATGTATAAGATCATA 59.343 44.000 0.00 0.00 0.00 2.15
726 727 4.467795 CCGGGAGTGGATGTATAAGATCAT 59.532 45.833 0.00 0.00 0.00 2.45
727 728 3.832490 CCGGGAGTGGATGTATAAGATCA 59.168 47.826 0.00 0.00 0.00 2.92
728 729 3.368531 GCCGGGAGTGGATGTATAAGATC 60.369 52.174 2.18 0.00 0.00 2.75
729 730 2.567615 GCCGGGAGTGGATGTATAAGAT 59.432 50.000 2.18 0.00 0.00 2.40
730 731 1.968493 GCCGGGAGTGGATGTATAAGA 59.032 52.381 2.18 0.00 0.00 2.10
731 732 1.002087 GGCCGGGAGTGGATGTATAAG 59.998 57.143 2.18 0.00 0.00 1.73
732 733 1.053424 GGCCGGGAGTGGATGTATAA 58.947 55.000 2.18 0.00 0.00 0.98
733 734 0.190069 AGGCCGGGAGTGGATGTATA 59.810 55.000 2.18 0.00 0.00 1.47
734 735 1.074471 AGGCCGGGAGTGGATGTAT 60.074 57.895 2.18 0.00 0.00 2.29
735 736 2.063979 CAGGCCGGGAGTGGATGTA 61.064 63.158 2.18 0.00 0.00 2.29
736 737 3.402681 CAGGCCGGGAGTGGATGT 61.403 66.667 2.18 0.00 0.00 3.06
737 738 2.484287 AAACAGGCCGGGAGTGGATG 62.484 60.000 8.08 0.00 0.00 3.51
738 739 1.789576 AAAACAGGCCGGGAGTGGAT 61.790 55.000 8.08 0.00 0.00 3.41
739 740 2.002018 AAAAACAGGCCGGGAGTGGA 62.002 55.000 8.08 0.00 0.00 4.02
740 741 0.250989 TAAAAACAGGCCGGGAGTGG 60.251 55.000 8.08 0.00 0.00 4.00
741 742 1.165270 CTAAAAACAGGCCGGGAGTG 58.835 55.000 8.08 0.00 0.00 3.51
742 743 0.769247 ACTAAAAACAGGCCGGGAGT 59.231 50.000 8.08 0.00 0.00 3.85
743 744 2.629051 CTACTAAAAACAGGCCGGGAG 58.371 52.381 8.08 0.00 0.00 4.30
744 745 1.279846 CCTACTAAAAACAGGCCGGGA 59.720 52.381 8.08 0.00 0.00 5.14
745 746 1.746470 CCTACTAAAAACAGGCCGGG 58.254 55.000 8.08 1.20 0.00 5.73
751 752 7.657336 TCATTTTTCCTGCCTACTAAAAACAG 58.343 34.615 0.00 0.00 34.63 3.16
752 753 7.589958 TCATTTTTCCTGCCTACTAAAAACA 57.410 32.000 0.00 0.00 34.63 2.83
753 754 8.880878 TTTCATTTTTCCTGCCTACTAAAAAC 57.119 30.769 0.00 0.00 34.63 2.43
755 756 9.705290 GAATTTCATTTTTCCTGCCTACTAAAA 57.295 29.630 0.00 0.00 0.00 1.52
756 757 8.311109 GGAATTTCATTTTTCCTGCCTACTAAA 58.689 33.333 0.00 0.00 38.68 1.85
757 758 7.362574 CGGAATTTCATTTTTCCTGCCTACTAA 60.363 37.037 0.00 0.00 39.42 2.24
758 759 6.094881 CGGAATTTCATTTTTCCTGCCTACTA 59.905 38.462 0.00 0.00 39.42 1.82
759 760 5.105756 CGGAATTTCATTTTTCCTGCCTACT 60.106 40.000 0.00 0.00 39.42 2.57
760 761 5.102313 CGGAATTTCATTTTTCCTGCCTAC 58.898 41.667 0.00 0.00 39.42 3.18
761 762 4.770010 ACGGAATTTCATTTTTCCTGCCTA 59.230 37.500 0.00 0.00 39.42 3.93
762 763 3.578282 ACGGAATTTCATTTTTCCTGCCT 59.422 39.130 0.00 0.00 39.42 4.75
763 764 3.925379 ACGGAATTTCATTTTTCCTGCC 58.075 40.909 0.00 0.00 39.42 4.85
764 765 6.589907 ACATAACGGAATTTCATTTTTCCTGC 59.410 34.615 0.00 0.00 39.42 4.85
765 766 8.532977 AACATAACGGAATTTCATTTTTCCTG 57.467 30.769 0.00 0.00 39.42 3.86
766 767 8.987890 CAAACATAACGGAATTTCATTTTTCCT 58.012 29.630 0.00 0.00 39.42 3.36
767 768 8.227119 CCAAACATAACGGAATTTCATTTTTCC 58.773 33.333 0.00 0.00 38.42 3.13
768 769 8.227119 CCCAAACATAACGGAATTTCATTTTTC 58.773 33.333 0.00 0.00 0.00 2.29
769 770 7.174080 CCCCAAACATAACGGAATTTCATTTTT 59.826 33.333 0.00 0.00 0.00 1.94
770 771 6.652900 CCCCAAACATAACGGAATTTCATTTT 59.347 34.615 0.00 0.00 0.00 1.82
771 772 6.014156 TCCCCAAACATAACGGAATTTCATTT 60.014 34.615 0.00 0.00 0.00 2.32
772 773 5.482175 TCCCCAAACATAACGGAATTTCATT 59.518 36.000 0.00 0.00 0.00 2.57
773 774 5.020132 TCCCCAAACATAACGGAATTTCAT 58.980 37.500 0.00 0.00 0.00 2.57
774 775 4.218852 GTCCCCAAACATAACGGAATTTCA 59.781 41.667 0.00 0.00 0.00 2.69
775 776 4.673320 CGTCCCCAAACATAACGGAATTTC 60.673 45.833 0.00 0.00 0.00 2.17
776 777 3.191791 CGTCCCCAAACATAACGGAATTT 59.808 43.478 0.00 0.00 0.00 1.82
777 778 2.750712 CGTCCCCAAACATAACGGAATT 59.249 45.455 0.00 0.00 0.00 2.17
778 779 2.361789 CGTCCCCAAACATAACGGAAT 58.638 47.619 0.00 0.00 0.00 3.01
779 780 1.810959 CGTCCCCAAACATAACGGAA 58.189 50.000 0.00 0.00 0.00 4.30
780 781 0.674269 GCGTCCCCAAACATAACGGA 60.674 55.000 0.00 0.00 34.11 4.69
781 782 0.675522 AGCGTCCCCAAACATAACGG 60.676 55.000 0.00 0.00 34.11 4.44
782 783 0.446222 CAGCGTCCCCAAACATAACG 59.554 55.000 0.00 0.00 36.48 3.18
783 784 1.530323 ACAGCGTCCCCAAACATAAC 58.470 50.000 0.00 0.00 0.00 1.89
784 785 2.279935 AACAGCGTCCCCAAACATAA 57.720 45.000 0.00 0.00 0.00 1.90
785 786 1.883275 CAAACAGCGTCCCCAAACATA 59.117 47.619 0.00 0.00 0.00 2.29
786 787 0.673437 CAAACAGCGTCCCCAAACAT 59.327 50.000 0.00 0.00 0.00 2.71
787 788 1.388065 CCAAACAGCGTCCCCAAACA 61.388 55.000 0.00 0.00 0.00 2.83
788 789 1.362355 CCAAACAGCGTCCCCAAAC 59.638 57.895 0.00 0.00 0.00 2.93
789 790 0.183014 TACCAAACAGCGTCCCCAAA 59.817 50.000 0.00 0.00 0.00 3.28
790 791 0.402504 ATACCAAACAGCGTCCCCAA 59.597 50.000 0.00 0.00 0.00 4.12
791 792 0.402504 AATACCAAACAGCGTCCCCA 59.597 50.000 0.00 0.00 0.00 4.96
792 793 0.808755 CAATACCAAACAGCGTCCCC 59.191 55.000 0.00 0.00 0.00 4.81
793 794 0.808755 CCAATACCAAACAGCGTCCC 59.191 55.000 0.00 0.00 0.00 4.46
794 795 1.467342 GTCCAATACCAAACAGCGTCC 59.533 52.381 0.00 0.00 0.00 4.79
795 796 2.147958 TGTCCAATACCAAACAGCGTC 58.852 47.619 0.00 0.00 0.00 5.19
796 797 2.264005 TGTCCAATACCAAACAGCGT 57.736 45.000 0.00 0.00 0.00 5.07
797 798 3.190327 TCATTGTCCAATACCAAACAGCG 59.810 43.478 0.00 0.00 0.00 5.18
798 799 4.380867 CCTCATTGTCCAATACCAAACAGC 60.381 45.833 0.00 0.00 0.00 4.40
799 800 4.158394 CCCTCATTGTCCAATACCAAACAG 59.842 45.833 0.00 0.00 0.00 3.16
800 801 4.085733 CCCTCATTGTCCAATACCAAACA 58.914 43.478 0.00 0.00 0.00 2.83
801 802 3.447229 CCCCTCATTGTCCAATACCAAAC 59.553 47.826 0.00 0.00 0.00 2.93
802 803 3.335183 TCCCCTCATTGTCCAATACCAAA 59.665 43.478 0.00 0.00 0.00 3.28
803 804 2.922955 TCCCCTCATTGTCCAATACCAA 59.077 45.455 0.00 0.00 0.00 3.67
804 805 2.567862 TCCCCTCATTGTCCAATACCA 58.432 47.619 0.00 0.00 0.00 3.25
805 806 3.490348 CATCCCCTCATTGTCCAATACC 58.510 50.000 0.00 0.00 0.00 2.73
806 807 3.138283 TCCATCCCCTCATTGTCCAATAC 59.862 47.826 0.00 0.00 0.00 1.89
807 808 3.395607 CTCCATCCCCTCATTGTCCAATA 59.604 47.826 0.00 0.00 0.00 1.90
808 809 2.176364 CTCCATCCCCTCATTGTCCAAT 59.824 50.000 0.00 0.00 0.00 3.16
809 810 1.565759 CTCCATCCCCTCATTGTCCAA 59.434 52.381 0.00 0.00 0.00 3.53
813 814 3.254960 CCTATCTCCATCCCCTCATTGT 58.745 50.000 0.00 0.00 0.00 2.71
817 818 0.178891 GGCCTATCTCCATCCCCTCA 60.179 60.000 0.00 0.00 0.00 3.86
851 852 1.479205 GCCATCCAATACCTGCCATCA 60.479 52.381 0.00 0.00 0.00 3.07
874 875 5.152097 TCTAGTTACTTTTTCTGAGCGACG 58.848 41.667 0.00 0.00 0.00 5.12
875 876 6.380190 TCTCTAGTTACTTTTTCTGAGCGAC 58.620 40.000 0.00 0.00 0.00 5.19
877 878 7.639162 TTTCTCTAGTTACTTTTTCTGAGCG 57.361 36.000 0.00 0.00 0.00 5.03
888 889 4.869451 ACGGGAGGATTTCTCTAGTTACT 58.131 43.478 0.00 0.00 42.10 2.24
889 890 4.037803 GGACGGGAGGATTTCTCTAGTTAC 59.962 50.000 0.00 0.00 42.10 2.50
891 892 3.032459 GGACGGGAGGATTTCTCTAGTT 58.968 50.000 0.00 0.00 42.10 2.24
892 893 2.024273 TGGACGGGAGGATTTCTCTAGT 60.024 50.000 0.00 0.00 42.10 2.57
893 894 2.362717 GTGGACGGGAGGATTTCTCTAG 59.637 54.545 0.00 0.00 42.10 2.43
895 896 1.196012 GTGGACGGGAGGATTTCTCT 58.804 55.000 0.00 0.00 42.10 3.10
896 897 0.178301 GGTGGACGGGAGGATTTCTC 59.822 60.000 0.00 0.00 41.71 2.87
897 898 0.546747 TGGTGGACGGGAGGATTTCT 60.547 55.000 0.00 0.00 0.00 2.52
898 899 0.392595 GTGGTGGACGGGAGGATTTC 60.393 60.000 0.00 0.00 0.00 2.17
899 900 1.131303 TGTGGTGGACGGGAGGATTT 61.131 55.000 0.00 0.00 0.00 2.17
900 901 1.537889 TGTGGTGGACGGGAGGATT 60.538 57.895 0.00 0.00 0.00 3.01
901 902 2.121832 TGTGGTGGACGGGAGGAT 59.878 61.111 0.00 0.00 0.00 3.24
902 903 2.920912 GTGTGGTGGACGGGAGGA 60.921 66.667 0.00 0.00 0.00 3.71
904 905 3.238497 TGGTGTGGTGGACGGGAG 61.238 66.667 0.00 0.00 0.00 4.30
905 906 3.552384 GTGGTGTGGTGGACGGGA 61.552 66.667 0.00 0.00 0.00 5.14
923 924 2.734591 GTGTGGCGTCTGTCTCCA 59.265 61.111 0.00 0.00 0.00 3.86
937 940 0.251341 GGAATTCCAGTGGCAGGTGT 60.251 55.000 20.04 0.00 35.64 4.16
1045 1065 2.440247 GGTGGAAGGAATGGGCGG 60.440 66.667 0.00 0.00 0.00 6.13
1052 1072 3.327404 GCGGGGAGGTGGAAGGAA 61.327 66.667 0.00 0.00 0.00 3.36
1662 1931 0.179065 GGGGCACACCTATACGTTCC 60.179 60.000 0.00 0.00 40.03 3.62
1791 2060 1.376424 CACAGCAATGCGGACCTCT 60.376 57.895 13.08 0.00 0.00 3.69
2218 2673 6.891908 ACACCTAATCATGAATTACCAGCTTT 59.108 34.615 0.00 0.00 0.00 3.51
2278 2769 5.720202 AGTTGTCAGTTACATCGAGCATTA 58.280 37.500 0.00 0.00 38.10 1.90
2285 2776 7.011773 CAGAAATCAAGTTGTCAGTTACATCG 58.988 38.462 2.11 0.00 38.10 3.84
2297 2788 5.065914 TCTCAGGGTTCAGAAATCAAGTTG 58.934 41.667 0.00 0.00 0.00 3.16
2319 2811 1.188863 AGCCCAGCCAATTCAACATC 58.811 50.000 0.00 0.00 0.00 3.06
2351 6381 4.510167 AATACCTTCTCCCTCACCATTG 57.490 45.455 0.00 0.00 0.00 2.82
2570 6660 3.144506 CAGGCCAAGCTATATGGAAGTG 58.855 50.000 5.01 0.00 40.56 3.16
2743 6835 2.286872 TCTACCGTTCTGATCCTCGAC 58.713 52.381 0.00 0.00 0.00 4.20
2746 6838 2.605823 CGCATCTACCGTTCTGATCCTC 60.606 54.545 0.00 0.00 0.00 3.71
2756 6848 1.257743 ATATCTGCCGCATCTACCGT 58.742 50.000 0.00 0.00 0.00 4.83
2776 6895 5.413309 CCAGACAGGTATTCACTCTTCTT 57.587 43.478 0.00 0.00 0.00 2.52
2790 6909 1.301716 CCGTCACCAACCAGACAGG 60.302 63.158 0.00 0.00 45.67 4.00
2792 6911 2.110213 GCCGTCACCAACCAGACA 59.890 61.111 0.00 0.00 34.48 3.41
2908 7034 2.613133 GCTGCACCAAAAATCAAAGCAA 59.387 40.909 0.00 0.00 0.00 3.91
2997 7123 8.383947 AGGAAATAAAGGCTTATAGGGTGTATC 58.616 37.037 0.00 0.00 0.00 2.24
2999 7125 7.701257 AGGAAATAAAGGCTTATAGGGTGTA 57.299 36.000 0.00 0.00 0.00 2.90
3012 7138 5.681639 ACGGATACCAGAAGGAAATAAAGG 58.318 41.667 0.00 0.00 38.69 3.11
3092 7218 3.797039 TCCAATCATTAGCTCTGAACGG 58.203 45.455 0.00 0.23 0.00 4.44
3096 7222 4.293494 ACCTCTCCAATCATTAGCTCTGA 58.707 43.478 0.00 0.00 0.00 3.27
3110 7236 1.374947 CAAAAGCCGGACCTCTCCA 59.625 57.895 5.05 0.00 36.12 3.86
3111 7237 0.250770 AACAAAAGCCGGACCTCTCC 60.251 55.000 5.05 0.00 0.00 3.71
3112 7238 1.535896 GAAACAAAAGCCGGACCTCTC 59.464 52.381 5.05 0.00 0.00 3.20
3113 7239 1.605753 GAAACAAAAGCCGGACCTCT 58.394 50.000 5.05 0.00 0.00 3.69
3114 7240 0.596577 GGAAACAAAAGCCGGACCTC 59.403 55.000 5.05 0.00 0.00 3.85
3115 7241 0.826256 GGGAAACAAAAGCCGGACCT 60.826 55.000 5.05 0.00 0.00 3.85
3116 7242 0.826256 AGGGAAACAAAAGCCGGACC 60.826 55.000 5.05 0.00 0.00 4.46
3117 7243 0.313987 CAGGGAAACAAAAGCCGGAC 59.686 55.000 5.05 0.00 0.00 4.79
3118 7244 0.183971 TCAGGGAAACAAAAGCCGGA 59.816 50.000 5.05 0.00 0.00 5.14
3119 7245 1.256812 ATCAGGGAAACAAAAGCCGG 58.743 50.000 0.00 0.00 0.00 6.13
3120 7246 3.385193 AAATCAGGGAAACAAAAGCCG 57.615 42.857 0.00 0.00 0.00 5.52
3144 7270 4.327982 TCCCGCTTCTCATTTATCTGAG 57.672 45.455 0.00 0.00 43.33 3.35
3145 7271 4.081142 TGTTCCCGCTTCTCATTTATCTGA 60.081 41.667 0.00 0.00 0.00 3.27
3146 7272 4.191544 TGTTCCCGCTTCTCATTTATCTG 58.808 43.478 0.00 0.00 0.00 2.90
3147 7273 4.487714 TGTTCCCGCTTCTCATTTATCT 57.512 40.909 0.00 0.00 0.00 1.98
3148 7274 4.636206 ACTTGTTCCCGCTTCTCATTTATC 59.364 41.667 0.00 0.00 0.00 1.75
3149 7275 4.589908 ACTTGTTCCCGCTTCTCATTTAT 58.410 39.130 0.00 0.00 0.00 1.40
3150 7276 4.015872 ACTTGTTCCCGCTTCTCATTTA 57.984 40.909 0.00 0.00 0.00 1.40
3151 7277 2.863809 ACTTGTTCCCGCTTCTCATTT 58.136 42.857 0.00 0.00 0.00 2.32
3152 7278 2.568623 ACTTGTTCCCGCTTCTCATT 57.431 45.000 0.00 0.00 0.00 2.57
3153 7279 2.568623 AACTTGTTCCCGCTTCTCAT 57.431 45.000 0.00 0.00 0.00 2.90
3154 7280 3.478857 TTAACTTGTTCCCGCTTCTCA 57.521 42.857 0.00 0.00 0.00 3.27
3155 7281 6.315393 TCATATTTAACTTGTTCCCGCTTCTC 59.685 38.462 0.00 0.00 0.00 2.87
3156 7282 6.177610 TCATATTTAACTTGTTCCCGCTTCT 58.822 36.000 0.00 0.00 0.00 2.85
3157 7283 6.315393 TCTCATATTTAACTTGTTCCCGCTTC 59.685 38.462 0.00 0.00 0.00 3.86
3158 7284 6.177610 TCTCATATTTAACTTGTTCCCGCTT 58.822 36.000 0.00 0.00 0.00 4.68
3159 7285 5.741011 TCTCATATTTAACTTGTTCCCGCT 58.259 37.500 0.00 0.00 0.00 5.52
3160 7286 5.815740 TCTCTCATATTTAACTTGTTCCCGC 59.184 40.000 0.00 0.00 0.00 6.13
3161 7287 7.011482 CCTTCTCTCATATTTAACTTGTTCCCG 59.989 40.741 0.00 0.00 0.00 5.14
3162 7288 8.047310 TCCTTCTCTCATATTTAACTTGTTCCC 58.953 37.037 0.00 0.00 0.00 3.97
3163 7289 9.620259 ATCCTTCTCTCATATTTAACTTGTTCC 57.380 33.333 0.00 0.00 0.00 3.62
3165 7291 9.401058 CCATCCTTCTCTCATATTTAACTTGTT 57.599 33.333 0.00 0.00 0.00 2.83
3166 7292 8.552296 ACCATCCTTCTCTCATATTTAACTTGT 58.448 33.333 0.00 0.00 0.00 3.16
3167 7293 8.970859 ACCATCCTTCTCTCATATTTAACTTG 57.029 34.615 0.00 0.00 0.00 3.16
3169 7295 9.440761 AGTACCATCCTTCTCTCATATTTAACT 57.559 33.333 0.00 0.00 0.00 2.24
3170 7296 9.482627 CAGTACCATCCTTCTCTCATATTTAAC 57.517 37.037 0.00 0.00 0.00 2.01
3171 7297 9.434275 TCAGTACCATCCTTCTCTCATATTTAA 57.566 33.333 0.00 0.00 0.00 1.52
3172 7298 9.607333 ATCAGTACCATCCTTCTCTCATATTTA 57.393 33.333 0.00 0.00 0.00 1.40
3173 7299 7.921041 TCAGTACCATCCTTCTCTCATATTT 57.079 36.000 0.00 0.00 0.00 1.40
3174 7300 8.503428 AATCAGTACCATCCTTCTCTCATATT 57.497 34.615 0.00 0.00 0.00 1.28
3175 7301 7.955185 AGAATCAGTACCATCCTTCTCTCATAT 59.045 37.037 0.00 0.00 0.00 1.78
3176 7302 7.232330 CAGAATCAGTACCATCCTTCTCTCATA 59.768 40.741 0.00 0.00 0.00 2.15
3177 7303 6.041865 CAGAATCAGTACCATCCTTCTCTCAT 59.958 42.308 0.00 0.00 0.00 2.90
3178 7304 5.362143 CAGAATCAGTACCATCCTTCTCTCA 59.638 44.000 0.00 0.00 0.00 3.27
3179 7305 5.596361 TCAGAATCAGTACCATCCTTCTCTC 59.404 44.000 0.00 0.00 0.00 3.20
3180 7306 5.523588 TCAGAATCAGTACCATCCTTCTCT 58.476 41.667 0.00 0.00 0.00 3.10
3181 7307 5.362430 ACTCAGAATCAGTACCATCCTTCTC 59.638 44.000 0.00 0.00 0.00 2.87
3182 7308 5.276440 ACTCAGAATCAGTACCATCCTTCT 58.724 41.667 0.00 0.00 0.00 2.85
3183 7309 5.606348 ACTCAGAATCAGTACCATCCTTC 57.394 43.478 0.00 0.00 0.00 3.46
3184 7310 6.322712 GTCTACTCAGAATCAGTACCATCCTT 59.677 42.308 0.00 0.00 30.85 3.36
3185 7311 5.830991 GTCTACTCAGAATCAGTACCATCCT 59.169 44.000 0.00 0.00 30.85 3.24
3186 7312 5.830991 AGTCTACTCAGAATCAGTACCATCC 59.169 44.000 0.00 0.00 30.85 3.51
3187 7313 6.952773 AGTCTACTCAGAATCAGTACCATC 57.047 41.667 0.00 0.00 30.85 3.51
3188 7314 7.068103 CAGAAGTCTACTCAGAATCAGTACCAT 59.932 40.741 0.00 0.00 30.85 3.55
3189 7315 6.375736 CAGAAGTCTACTCAGAATCAGTACCA 59.624 42.308 0.00 0.00 30.85 3.25
3190 7316 6.600032 TCAGAAGTCTACTCAGAATCAGTACC 59.400 42.308 0.00 0.00 30.85 3.34
3191 7317 7.618502 TCAGAAGTCTACTCAGAATCAGTAC 57.381 40.000 0.00 0.00 30.85 2.73
3192 7318 8.049721 TCATCAGAAGTCTACTCAGAATCAGTA 58.950 37.037 0.00 0.00 30.85 2.74
3193 7319 6.889177 TCATCAGAAGTCTACTCAGAATCAGT 59.111 38.462 0.00 0.00 30.85 3.41
3194 7320 7.282901 TCTCATCAGAAGTCTACTCAGAATCAG 59.717 40.741 0.00 0.00 30.85 2.90
3195 7321 7.115414 TCTCATCAGAAGTCTACTCAGAATCA 58.885 38.462 0.00 0.00 30.85 2.57
3196 7322 7.498900 TCTCTCATCAGAAGTCTACTCAGAATC 59.501 40.741 0.00 0.00 30.85 2.52
3197 7323 7.345691 TCTCTCATCAGAAGTCTACTCAGAAT 58.654 38.462 0.00 0.00 30.85 2.40
3198 7324 6.716284 TCTCTCATCAGAAGTCTACTCAGAA 58.284 40.000 0.00 0.00 30.85 3.02
3199 7325 6.306643 TCTCTCATCAGAAGTCTACTCAGA 57.693 41.667 0.00 0.00 0.00 3.27
3200 7326 6.456853 CGTTCTCTCATCAGAAGTCTACTCAG 60.457 46.154 0.00 0.00 32.89 3.35
3201 7327 5.352846 CGTTCTCTCATCAGAAGTCTACTCA 59.647 44.000 0.00 0.00 32.89 3.41
3202 7328 5.583061 TCGTTCTCTCATCAGAAGTCTACTC 59.417 44.000 0.00 0.00 32.89 2.59
3203 7329 5.492895 TCGTTCTCTCATCAGAAGTCTACT 58.507 41.667 0.00 0.00 32.89 2.57
3204 7330 5.804692 TCGTTCTCTCATCAGAAGTCTAC 57.195 43.478 0.00 0.00 32.89 2.59
3205 7331 5.529430 GGATCGTTCTCTCATCAGAAGTCTA 59.471 44.000 0.00 0.00 32.89 2.59
3206 7332 4.338118 GGATCGTTCTCTCATCAGAAGTCT 59.662 45.833 0.00 0.00 32.89 3.24
3207 7333 4.097135 TGGATCGTTCTCTCATCAGAAGTC 59.903 45.833 0.00 0.00 32.89 3.01
3208 7334 4.019858 TGGATCGTTCTCTCATCAGAAGT 58.980 43.478 0.00 0.00 32.89 3.01
3209 7335 4.609947 CTGGATCGTTCTCTCATCAGAAG 58.390 47.826 0.00 0.00 32.89 2.85
3210 7336 3.181482 GCTGGATCGTTCTCTCATCAGAA 60.181 47.826 0.00 0.00 0.00 3.02
3211 7337 2.360483 GCTGGATCGTTCTCTCATCAGA 59.640 50.000 0.00 0.00 0.00 3.27
3212 7338 2.100418 TGCTGGATCGTTCTCTCATCAG 59.900 50.000 0.00 0.00 0.00 2.90
3213 7339 2.102578 TGCTGGATCGTTCTCTCATCA 58.897 47.619 0.00 0.00 0.00 3.07
3214 7340 2.879002 TGCTGGATCGTTCTCTCATC 57.121 50.000 0.00 0.00 0.00 2.92
3215 7341 2.741228 GCTTGCTGGATCGTTCTCTCAT 60.741 50.000 0.00 0.00 0.00 2.90
3216 7342 1.404717 GCTTGCTGGATCGTTCTCTCA 60.405 52.381 0.00 0.00 0.00 3.27
3217 7343 1.285578 GCTTGCTGGATCGTTCTCTC 58.714 55.000 0.00 0.00 0.00 3.20
3218 7344 0.610174 TGCTTGCTGGATCGTTCTCT 59.390 50.000 0.00 0.00 0.00 3.10
3219 7345 1.442769 TTGCTTGCTGGATCGTTCTC 58.557 50.000 0.00 0.00 0.00 2.87
3220 7346 1.741706 CATTGCTTGCTGGATCGTTCT 59.258 47.619 0.00 0.00 0.00 3.01
3221 7347 1.202222 CCATTGCTTGCTGGATCGTTC 60.202 52.381 0.00 0.00 34.24 3.95
3222 7348 0.813184 CCATTGCTTGCTGGATCGTT 59.187 50.000 0.00 0.00 34.24 3.85
3223 7349 0.322816 ACCATTGCTTGCTGGATCGT 60.323 50.000 7.71 0.00 36.35 3.73
3224 7350 1.667236 TACCATTGCTTGCTGGATCG 58.333 50.000 7.71 0.00 36.35 3.69
3225 7351 3.382546 ACAATACCATTGCTTGCTGGATC 59.617 43.478 7.71 0.00 36.35 3.36
3226 7352 3.368248 ACAATACCATTGCTTGCTGGAT 58.632 40.909 7.71 0.00 36.35 3.41
3227 7353 2.806434 ACAATACCATTGCTTGCTGGA 58.194 42.857 7.71 0.00 36.35 3.86
3228 7354 3.056678 TGAACAATACCATTGCTTGCTGG 60.057 43.478 0.00 0.17 38.55 4.85
3229 7355 4.082625 TCTGAACAATACCATTGCTTGCTG 60.083 41.667 0.00 0.00 0.00 4.41
3230 7356 4.081406 TCTGAACAATACCATTGCTTGCT 58.919 39.130 0.00 0.00 0.00 3.91
3231 7357 4.082571 ACTCTGAACAATACCATTGCTTGC 60.083 41.667 0.00 0.00 0.00 4.01
3232 7358 5.633830 ACTCTGAACAATACCATTGCTTG 57.366 39.130 0.00 0.00 0.00 4.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.