Multiple sequence alignment - TraesCS6D01G017700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G017700 chr6D 100.000 3921 0 0 1 3921 7346738 7342818 0.000000e+00 7241.0
1 TraesCS6D01G017700 chr6D 89.146 2202 231 8 772 2969 7359506 7357309 0.000000e+00 2736.0
2 TraesCS6D01G017700 chr6D 81.699 306 47 7 3001 3300 7357346 7357044 3.030000e-61 246.0
3 TraesCS6D01G017700 chrUn 89.781 2554 200 41 461 2979 80037460 80034933 0.000000e+00 3214.0
4 TraesCS6D01G017700 chrUn 88.602 2553 235 33 458 2979 79936783 79939310 0.000000e+00 3051.0
5 TraesCS6D01G017700 chrUn 89.260 2216 166 29 250 2413 79930022 79932217 0.000000e+00 2708.0
6 TraesCS6D01G017700 chrUn 85.998 1914 210 32 458 2338 79854327 79856215 0.000000e+00 1997.0
7 TraesCS6D01G017700 chrUn 94.737 247 12 1 1 246 79929739 79929985 2.210000e-102 383.0
8 TraesCS6D01G017700 chr7D 90.862 2331 197 7 652 2979 597677244 597674927 0.000000e+00 3110.0
9 TraesCS6D01G017700 chr6B 88.696 2362 234 18 642 2978 26861660 26864013 0.000000e+00 2852.0
10 TraesCS6D01G017700 chr6B 86.928 2448 271 32 538 2949 13654177 13651743 0.000000e+00 2702.0
11 TraesCS6D01G017700 chr6B 87.273 110 5 6 348 454 12886134 12886237 2.480000e-22 117.0
12 TraesCS6D01G017700 chr6B 94.444 36 2 0 532 567 12886332 12886367 5.470000e-04 56.5
13 TraesCS6D01G017700 chr5B 89.182 2237 231 10 738 2969 432982651 432984881 0.000000e+00 2780.0
14 TraesCS6D01G017700 chr5B 91.720 157 13 0 3313 3469 432985192 432985348 6.600000e-53 219.0
15 TraesCS6D01G017700 chr5B 98.571 70 1 0 3849 3918 432985369 432985438 1.480000e-24 124.0
16 TraesCS6D01G017700 chr5B 98.077 52 1 0 403 454 432982316 432982367 1.500000e-14 91.6
17 TraesCS6D01G017700 chr5B 98.000 50 1 0 369 418 432982267 432982316 1.940000e-13 87.9
18 TraesCS6D01G017700 chr6A 88.186 2260 252 13 727 2978 7079568 7081820 0.000000e+00 2680.0
19 TraesCS6D01G017700 chr6A 87.098 2333 271 17 655 2979 7176069 7173759 0.000000e+00 2614.0
20 TraesCS6D01G017700 chr6A 83.178 321 34 9 3016 3317 7092339 7092658 3.860000e-70 276.0
21 TraesCS6D01G017700 chr6A 83.007 306 41 8 3001 3300 7081774 7082074 2.320000e-67 267.0
22 TraesCS6D01G017700 chr6A 86.066 122 9 3 490 605 7079302 7079421 1.480000e-24 124.0
23 TraesCS6D01G017700 chr6A 97.143 70 2 0 3849 3918 7092859 7092928 6.880000e-23 119.0
24 TraesCS6D01G017700 chr6A 87.778 90 6 3 3091 3178 7184364 7184278 2.490000e-17 100.0
25 TraesCS6D01G017700 chr6A 94.915 59 3 0 3091 3149 7082071 7082129 4.170000e-15 93.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G017700 chr6D 7342818 7346738 3920 True 7241.000 7241 100.0000 1 3921 1 chr6D.!!$R1 3920
1 TraesCS6D01G017700 chr6D 7357044 7359506 2462 True 1491.000 2736 85.4225 772 3300 2 chr6D.!!$R2 2528
2 TraesCS6D01G017700 chrUn 80034933 80037460 2527 True 3214.000 3214 89.7810 461 2979 1 chrUn.!!$R1 2518
3 TraesCS6D01G017700 chrUn 79936783 79939310 2527 False 3051.000 3051 88.6020 458 2979 1 chrUn.!!$F2 2521
4 TraesCS6D01G017700 chrUn 79854327 79856215 1888 False 1997.000 1997 85.9980 458 2338 1 chrUn.!!$F1 1880
5 TraesCS6D01G017700 chrUn 79929739 79932217 2478 False 1545.500 2708 91.9985 1 2413 2 chrUn.!!$F3 2412
6 TraesCS6D01G017700 chr7D 597674927 597677244 2317 True 3110.000 3110 90.8620 652 2979 1 chr7D.!!$R1 2327
7 TraesCS6D01G017700 chr6B 26861660 26864013 2353 False 2852.000 2852 88.6960 642 2978 1 chr6B.!!$F1 2336
8 TraesCS6D01G017700 chr6B 13651743 13654177 2434 True 2702.000 2702 86.9280 538 2949 1 chr6B.!!$R1 2411
9 TraesCS6D01G017700 chr5B 432982267 432985438 3171 False 660.500 2780 95.1100 369 3918 5 chr5B.!!$F1 3549
10 TraesCS6D01G017700 chr6A 7173759 7176069 2310 True 2614.000 2614 87.0980 655 2979 1 chr6A.!!$R1 2324
11 TraesCS6D01G017700 chr6A 7079302 7082129 2827 False 791.125 2680 88.0435 490 3300 4 chr6A.!!$F1 2810

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
942 1169 0.394192 CAACTGCCTCCTCACTGTCA 59.606 55.000 0.0 0.0 0.00 3.58 F
1230 1457 1.806542 AGCTTAACTGCACACCGAATG 59.193 47.619 0.0 0.0 34.99 2.67 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1911 2142 0.328258 ATGCACTACCTCACCAACCC 59.672 55.0 0.0 0.0 0.0 4.11 R
2984 3221 0.106967 GTCTGGCATCTCCCCTTTCC 60.107 60.0 0.0 0.0 0.0 3.13 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
155 156 1.239968 CCACACCAGCAGGAGAAAGC 61.240 60.000 0.35 0.00 38.69 3.51
181 183 4.678743 GCCGCCTTCCTTGGGGTT 62.679 66.667 0.00 0.00 38.23 4.11
186 188 1.076727 CCTTCCTTGGGGTTGGACC 59.923 63.158 0.00 0.00 37.60 4.46
196 198 2.519780 GTTGGACCGGGTTTGCCA 60.520 61.111 6.32 0.77 36.17 4.92
197 199 2.203422 TTGGACCGGGTTTGCCAG 60.203 61.111 6.32 0.00 36.17 4.85
198 200 3.063197 TTGGACCGGGTTTGCCAGT 62.063 57.895 6.32 0.00 36.17 4.00
201 203 4.596585 ACCGGGTTTGCCAGTGGG 62.597 66.667 12.15 0.00 36.17 4.61
225 227 4.124351 CCGGCGGCGACAAGACTA 62.124 66.667 34.49 0.00 0.00 2.59
257 292 1.872952 TGGAGAAATTGTGCACAGTCG 59.127 47.619 20.59 0.00 0.00 4.18
304 343 5.908916 AGCTAGAAAAGAAACGTTGTCTC 57.091 39.130 0.00 0.00 0.00 3.36
310 349 2.622064 AGAAACGTTGTCTCAGGCTT 57.378 45.000 0.00 0.00 0.00 4.35
455 534 3.760035 GCGTTGAGGCCCTCTCGA 61.760 66.667 24.65 5.71 45.32 4.04
456 535 2.492090 CGTTGAGGCCCTCTCGAG 59.508 66.667 18.81 5.93 45.32 4.04
576 687 3.582120 CAACGCTGTGGCCGTGTT 61.582 61.111 0.00 0.00 35.66 3.32
629 761 0.740868 GCAGCTGCATCTCAACGGTA 60.741 55.000 33.36 0.00 41.59 4.02
631 763 2.076100 CAGCTGCATCTCAACGGTAAA 58.924 47.619 0.00 0.00 0.00 2.01
837 1064 3.430929 GCAGAACATCAAGGATCGGTACT 60.431 47.826 0.00 0.00 0.00 2.73
842 1069 3.564644 ACATCAAGGATCGGTACTACTCG 59.435 47.826 0.00 0.00 0.00 4.18
844 1071 1.001597 CAAGGATCGGTACTACTCGGC 60.002 57.143 0.00 0.00 0.00 5.54
892 1119 1.401539 GCTGTTTGACGAATTGCTCCC 60.402 52.381 0.00 0.00 0.00 4.30
905 1132 3.473647 CTCCCGGATGCTGAGCCA 61.474 66.667 0.73 0.00 0.00 4.75
942 1169 0.394192 CAACTGCCTCCTCACTGTCA 59.606 55.000 0.00 0.00 0.00 3.58
1229 1456 2.076863 GAGCTTAACTGCACACCGAAT 58.923 47.619 0.00 0.00 34.99 3.34
1230 1457 1.806542 AGCTTAACTGCACACCGAATG 59.193 47.619 0.00 0.00 34.99 2.67
1366 1596 4.812626 GGTGACCTATAACACCGTAATTGG 59.187 45.833 0.00 0.00 45.16 3.16
1425 1655 6.588719 ACAGCCTATTTTGTGAAATGCTAA 57.411 33.333 0.00 0.00 34.24 3.09
1427 1657 7.441017 ACAGCCTATTTTGTGAAATGCTAAAA 58.559 30.769 0.00 0.00 34.24 1.52
1428 1658 7.599998 ACAGCCTATTTTGTGAAATGCTAAAAG 59.400 33.333 0.00 0.00 34.24 2.27
1430 1660 6.183360 GCCTATTTTGTGAAATGCTAAAAGGC 60.183 38.462 0.00 0.00 36.22 4.35
1431 1661 6.873076 CCTATTTTGTGAAATGCTAAAAGGCA 59.127 34.615 0.00 0.00 46.63 4.75
1472 1703 6.039616 GTGACCTACAACTCAATCATCTCTC 58.960 44.000 0.00 0.00 0.00 3.20
1474 1705 4.098654 ACCTACAACTCAATCATCTCTCGG 59.901 45.833 0.00 0.00 0.00 4.63
1632 1863 2.778299 TCGGGTTCTCAAGGAAATGTG 58.222 47.619 0.00 0.00 35.51 3.21
1639 1870 6.072452 GGGTTCTCAAGGAAATGTGTAGAAAG 60.072 42.308 0.00 0.00 35.51 2.62
1640 1871 6.710744 GGTTCTCAAGGAAATGTGTAGAAAGA 59.289 38.462 0.00 0.00 35.51 2.52
1925 2156 3.328050 AGAAGAAAGGGTTGGTGAGGTAG 59.672 47.826 0.00 0.00 0.00 3.18
2081 2312 6.497259 TGAAGGATTACTCCCTGGTATCATAC 59.503 42.308 0.00 0.00 43.21 2.39
2091 2322 4.385199 CCCTGGTATCATACTTTTCAGCCA 60.385 45.833 0.00 0.00 0.00 4.75
2092 2323 5.192927 CCTGGTATCATACTTTTCAGCCAA 58.807 41.667 0.00 0.00 0.00 4.52
2111 2343 6.653320 CAGCCAACTTATTAGTGGTTTCTGTA 59.347 38.462 0.00 0.00 34.01 2.74
2182 2416 0.753262 GTGGCATCTATCCCGACACT 59.247 55.000 0.00 0.00 0.00 3.55
2209 2443 8.352137 TGTTCTTCAACACAATTATGGATCAT 57.648 30.769 0.00 0.00 37.61 2.45
2383 2617 2.832643 TGGTCTCAATTGGCATGGAT 57.167 45.000 5.42 0.00 0.00 3.41
2424 2658 9.363763 CTATAGCATACTGATTGATGGTTACTG 57.636 37.037 0.00 0.00 35.50 2.74
2908 3142 9.965824 GAAAAATATCACTCTTTTCTGGAACAA 57.034 29.630 3.37 0.00 38.70 2.83
2979 3216 3.007506 TGCTAATCGAGGGTTGAACTTCA 59.992 43.478 0.00 0.00 0.00 3.02
2980 3217 3.619038 GCTAATCGAGGGTTGAACTTCAG 59.381 47.826 0.00 0.00 0.00 3.02
2981 3218 3.771577 AATCGAGGGTTGAACTTCAGT 57.228 42.857 0.00 0.00 0.00 3.41
2982 3219 2.526304 TCGAGGGTTGAACTTCAGTG 57.474 50.000 0.00 0.00 0.00 3.66
2983 3220 1.070134 TCGAGGGTTGAACTTCAGTGG 59.930 52.381 0.00 0.00 0.00 4.00
2984 3221 1.878102 CGAGGGTTGAACTTCAGTGGG 60.878 57.143 0.00 0.00 0.00 4.61
2985 3222 0.478507 AGGGTTGAACTTCAGTGGGG 59.521 55.000 0.00 0.00 0.00 4.96
2986 3223 0.476771 GGGTTGAACTTCAGTGGGGA 59.523 55.000 0.00 0.00 0.00 4.81
2987 3224 1.133606 GGGTTGAACTTCAGTGGGGAA 60.134 52.381 0.00 0.00 0.00 3.97
2988 3225 2.661718 GGTTGAACTTCAGTGGGGAAA 58.338 47.619 0.00 0.00 0.00 3.13
2989 3226 2.623416 GGTTGAACTTCAGTGGGGAAAG 59.377 50.000 0.00 0.00 0.00 2.62
2990 3227 2.623416 GTTGAACTTCAGTGGGGAAAGG 59.377 50.000 0.00 0.00 0.00 3.11
2991 3228 1.144913 TGAACTTCAGTGGGGAAAGGG 59.855 52.381 0.00 0.00 0.00 3.95
2992 3229 0.482887 AACTTCAGTGGGGAAAGGGG 59.517 55.000 0.00 0.00 0.00 4.79
2993 3230 0.402861 ACTTCAGTGGGGAAAGGGGA 60.403 55.000 0.00 0.00 0.00 4.81
2994 3231 0.329596 CTTCAGTGGGGAAAGGGGAG 59.670 60.000 0.00 0.00 0.00 4.30
2995 3232 0.104144 TTCAGTGGGGAAAGGGGAGA 60.104 55.000 0.00 0.00 0.00 3.71
2996 3233 0.121197 TCAGTGGGGAAAGGGGAGAT 59.879 55.000 0.00 0.00 0.00 2.75
2997 3234 0.257039 CAGTGGGGAAAGGGGAGATG 59.743 60.000 0.00 0.00 0.00 2.90
2998 3235 1.076705 GTGGGGAAAGGGGAGATGC 60.077 63.158 0.00 0.00 0.00 3.91
2999 3236 2.316586 TGGGGAAAGGGGAGATGCC 61.317 63.158 0.00 0.00 0.00 4.40
3000 3237 2.316586 GGGGAAAGGGGAGATGCCA 61.317 63.158 0.00 0.00 38.95 4.92
3001 3238 1.228510 GGGAAAGGGGAGATGCCAG 59.771 63.158 0.00 0.00 38.95 4.85
3002 3239 1.281925 GGGAAAGGGGAGATGCCAGA 61.282 60.000 0.00 0.00 38.95 3.86
3003 3240 0.106967 GGAAAGGGGAGATGCCAGAC 60.107 60.000 0.00 0.00 38.95 3.51
3004 3241 0.620556 GAAAGGGGAGATGCCAGACA 59.379 55.000 0.00 0.00 38.95 3.41
3005 3242 1.213926 GAAAGGGGAGATGCCAGACAT 59.786 52.381 0.00 0.00 43.54 3.06
3006 3243 1.302907 AAGGGGAGATGCCAGACATT 58.697 50.000 0.00 0.00 39.84 2.71
3007 3244 0.549950 AGGGGAGATGCCAGACATTG 59.450 55.000 0.00 0.00 39.84 2.82
3008 3245 0.257039 GGGGAGATGCCAGACATTGT 59.743 55.000 0.00 0.00 39.84 2.71
3009 3246 1.386533 GGGAGATGCCAGACATTGTG 58.613 55.000 0.00 0.00 39.84 3.33
3010 3247 0.737219 GGAGATGCCAGACATTGTGC 59.263 55.000 0.00 0.00 39.84 4.57
3011 3248 0.737219 GAGATGCCAGACATTGTGCC 59.263 55.000 0.00 0.00 39.84 5.01
3012 3249 0.330604 AGATGCCAGACATTGTGCCT 59.669 50.000 0.00 0.00 39.84 4.75
3013 3250 1.180029 GATGCCAGACATTGTGCCTT 58.820 50.000 0.00 0.00 39.84 4.35
3014 3251 0.892755 ATGCCAGACATTGTGCCTTG 59.107 50.000 0.00 0.00 34.40 3.61
3015 3252 0.178995 TGCCAGACATTGTGCCTTGA 60.179 50.000 0.00 0.00 0.00 3.02
3020 3257 3.624861 CCAGACATTGTGCCTTGATACTC 59.375 47.826 0.00 0.00 0.00 2.59
3041 3278 0.249657 GGACTGCTAATCGAGGCCTG 60.250 60.000 12.00 2.19 34.09 4.85
3045 3282 1.137872 CTGCTAATCGAGGCCTGAACT 59.862 52.381 12.00 2.85 0.00 3.01
3048 3285 2.609916 GCTAATCGAGGCCTGAACTTTC 59.390 50.000 12.00 0.00 0.00 2.62
3061 3298 5.710567 GCCTGAACTTTCCTTTGTAGGTTAT 59.289 40.000 0.00 0.00 42.60 1.89
3069 3306 7.985752 ACTTTCCTTTGTAGGTTATATCTTCCG 59.014 37.037 0.00 0.00 42.60 4.30
3080 3317 7.273712 AGGTTATATCTTCCGACCTTTTCTTC 58.726 38.462 0.00 0.00 37.44 2.87
3089 3326 6.022163 TCCGACCTTTTCTTCTTGTAGTAG 57.978 41.667 0.00 0.00 0.00 2.57
3116 3353 9.924650 GTCTAAAATGTAGGTCACTTCTCTTAA 57.075 33.333 0.00 0.00 0.00 1.85
3158 3397 9.786105 GAACTTGTACTAGTAGTAAATCTGACC 57.214 37.037 11.64 0.00 31.62 4.02
3161 3400 7.928307 TGTACTAGTAGTAAATCTGACCGTT 57.072 36.000 11.64 0.00 31.62 4.44
3176 3416 3.007940 TGACCGTTCACCATTCTGAGAAT 59.992 43.478 0.97 0.97 0.00 2.40
3202 3442 5.641209 GCTATCTGTGTTTCTATATGGCTGG 59.359 44.000 0.00 0.00 0.00 4.85
3288 3544 9.321562 GACCTAATAAATTAATCTCAACGTCCA 57.678 33.333 0.00 0.00 0.00 4.02
3300 3556 3.138304 TCAACGTCCATTTCCTTGTCTG 58.862 45.455 0.00 0.00 0.00 3.51
3317 3573 6.370994 CCTTGTCTGCTATAATGATGGACATC 59.629 42.308 5.37 5.37 38.38 3.06
3340 3634 2.159198 GGCAACCATTGTCAATAGCCAG 60.159 50.000 18.29 0.93 40.50 4.85
3389 3683 0.904649 ATGATGACCGAGTTCTGCCA 59.095 50.000 0.00 0.00 0.00 4.92
3409 3703 2.246719 GTGGACTCACTGAAGTTGCT 57.753 50.000 0.00 0.00 40.58 3.91
3412 3706 2.965831 TGGACTCACTGAAGTTGCTAGT 59.034 45.455 0.00 0.00 0.00 2.57
3416 3710 3.056465 ACTCACTGAAGTTGCTAGTAGCC 60.056 47.826 19.41 5.02 41.51 3.93
3428 3722 5.073311 TGCTAGTAGCCAGTTAGTTTCTG 57.927 43.478 19.41 0.00 41.51 3.02
3439 3733 6.349363 GCCAGTTAGTTTCTGTATTCCCTTTG 60.349 42.308 0.00 0.00 0.00 2.77
3454 3748 9.406828 GTATTCCCTTTGTTCTTTACATTTGAC 57.593 33.333 0.00 0.00 36.44 3.18
3469 3763 2.363306 TTGACTGGGAACATGCAGTT 57.637 45.000 5.35 0.00 44.93 3.16
3482 3776 4.815269 ACATGCAGTTCTCAACTAGAGTC 58.185 43.478 0.00 0.00 44.98 3.36
3483 3777 3.944055 TGCAGTTCTCAACTAGAGTCC 57.056 47.619 0.00 0.00 44.98 3.85
3484 3778 3.230976 TGCAGTTCTCAACTAGAGTCCA 58.769 45.455 0.00 0.00 44.98 4.02
3486 3780 4.284490 TGCAGTTCTCAACTAGAGTCCATT 59.716 41.667 0.00 0.00 44.98 3.16
3488 3782 5.808030 GCAGTTCTCAACTAGAGTCCATTAC 59.192 44.000 0.00 0.00 44.98 1.89
3489 3783 6.334202 CAGTTCTCAACTAGAGTCCATTACC 58.666 44.000 0.00 0.00 44.98 2.85
3490 3784 6.017192 AGTTCTCAACTAGAGTCCATTACCA 58.983 40.000 0.00 0.00 44.98 3.25
3491 3785 5.916661 TCTCAACTAGAGTCCATTACCAC 57.083 43.478 0.00 0.00 44.98 4.16
3492 3786 5.580998 TCTCAACTAGAGTCCATTACCACT 58.419 41.667 0.00 0.00 44.98 4.00
3493 3787 5.652891 TCTCAACTAGAGTCCATTACCACTC 59.347 44.000 0.00 0.00 44.98 3.51
3494 3788 5.330233 TCAACTAGAGTCCATTACCACTCA 58.670 41.667 0.00 0.00 41.43 3.41
3495 3789 5.778241 TCAACTAGAGTCCATTACCACTCAA 59.222 40.000 0.00 0.00 41.43 3.02
3496 3790 6.269077 TCAACTAGAGTCCATTACCACTCAAA 59.731 38.462 0.00 0.00 41.43 2.69
3497 3791 6.681729 ACTAGAGTCCATTACCACTCAAAA 57.318 37.500 0.00 0.00 41.43 2.44
3498 3792 7.259088 ACTAGAGTCCATTACCACTCAAAAT 57.741 36.000 0.00 0.00 41.43 1.82
3499 3793 7.690256 ACTAGAGTCCATTACCACTCAAAATT 58.310 34.615 0.00 0.00 41.43 1.82
3500 3794 7.824779 ACTAGAGTCCATTACCACTCAAAATTC 59.175 37.037 0.00 0.00 41.43 2.17
3501 3795 6.784031 AGAGTCCATTACCACTCAAAATTCT 58.216 36.000 2.14 0.00 41.43 2.40
3502 3796 7.918076 AGAGTCCATTACCACTCAAAATTCTA 58.082 34.615 2.14 0.00 41.43 2.10
3503 3797 8.552296 AGAGTCCATTACCACTCAAAATTCTAT 58.448 33.333 2.14 0.00 41.43 1.98
3504 3798 9.178758 GAGTCCATTACCACTCAAAATTCTATT 57.821 33.333 0.00 0.00 39.17 1.73
3505 3799 9.178758 AGTCCATTACCACTCAAAATTCTATTC 57.821 33.333 0.00 0.00 0.00 1.75
3506 3800 8.956426 GTCCATTACCACTCAAAATTCTATTCA 58.044 33.333 0.00 0.00 0.00 2.57
3507 3801 9.699410 TCCATTACCACTCAAAATTCTATTCAT 57.301 29.630 0.00 0.00 0.00 2.57
3591 3885 8.906636 CAATATAGACAATATTGCATGGCTTC 57.093 34.615 15.48 3.83 46.40 3.86
3592 3886 8.737175 CAATATAGACAATATTGCATGGCTTCT 58.263 33.333 15.48 10.78 46.40 2.85
3593 3887 8.874744 ATATAGACAATATTGCATGGCTTCTT 57.125 30.769 15.48 3.63 36.09 2.52
3594 3888 5.927281 AGACAATATTGCATGGCTTCTTT 57.073 34.783 15.48 0.00 27.75 2.52
3595 3889 8.696043 ATAGACAATATTGCATGGCTTCTTTA 57.304 30.769 15.48 0.00 36.09 1.85
3596 3890 7.408756 AGACAATATTGCATGGCTTCTTTAA 57.591 32.000 15.48 0.00 27.75 1.52
3597 3891 8.015185 AGACAATATTGCATGGCTTCTTTAAT 57.985 30.769 15.48 0.00 27.75 1.40
3598 3892 8.480501 AGACAATATTGCATGGCTTCTTTAATT 58.519 29.630 15.48 0.00 27.75 1.40
3599 3893 9.101655 GACAATATTGCATGGCTTCTTTAATTT 57.898 29.630 15.48 0.00 0.00 1.82
3600 3894 8.885722 ACAATATTGCATGGCTTCTTTAATTTG 58.114 29.630 15.48 0.00 0.00 2.32
3601 3895 8.339714 CAATATTGCATGGCTTCTTTAATTTGG 58.660 33.333 1.74 0.00 0.00 3.28
3602 3896 3.598299 TGCATGGCTTCTTTAATTTGGC 58.402 40.909 0.00 0.00 0.00 4.52
3603 3897 3.007723 TGCATGGCTTCTTTAATTTGGCA 59.992 39.130 0.00 0.00 37.59 4.92
3604 3898 3.371898 GCATGGCTTCTTTAATTTGGCAC 59.628 43.478 0.00 0.00 36.10 5.01
3605 3899 4.824289 CATGGCTTCTTTAATTTGGCACT 58.176 39.130 0.00 0.00 36.10 4.40
3606 3900 4.953940 TGGCTTCTTTAATTTGGCACTT 57.046 36.364 0.00 0.00 0.00 3.16
3607 3901 5.289083 TGGCTTCTTTAATTTGGCACTTT 57.711 34.783 0.00 0.00 0.00 2.66
3608 3902 5.679601 TGGCTTCTTTAATTTGGCACTTTT 58.320 33.333 0.00 0.00 0.00 2.27
3609 3903 6.821388 TGGCTTCTTTAATTTGGCACTTTTA 58.179 32.000 0.00 0.00 0.00 1.52
3610 3904 7.449247 TGGCTTCTTTAATTTGGCACTTTTAT 58.551 30.769 0.00 0.00 0.00 1.40
3611 3905 7.936301 TGGCTTCTTTAATTTGGCACTTTTATT 59.064 29.630 0.00 0.00 0.00 1.40
3612 3906 8.229811 GGCTTCTTTAATTTGGCACTTTTATTG 58.770 33.333 0.00 0.00 0.00 1.90
3613 3907 8.773645 GCTTCTTTAATTTGGCACTTTTATTGT 58.226 29.630 0.00 0.00 0.00 2.71
3621 3915 8.729805 ATTTGGCACTTTTATTGTTTTCAAGA 57.270 26.923 0.00 0.00 43.41 3.02
3622 3916 7.769272 TTGGCACTTTTATTGTTTTCAAGAG 57.231 32.000 0.00 0.00 43.41 2.85
3623 3917 6.279882 TGGCACTTTTATTGTTTTCAAGAGG 58.720 36.000 0.00 0.00 43.41 3.69
3624 3918 6.127196 TGGCACTTTTATTGTTTTCAAGAGGT 60.127 34.615 0.00 0.00 43.41 3.85
3625 3919 6.420903 GGCACTTTTATTGTTTTCAAGAGGTC 59.579 38.462 0.00 0.00 43.41 3.85
3626 3920 6.978080 GCACTTTTATTGTTTTCAAGAGGTCA 59.022 34.615 0.00 0.00 43.41 4.02
3627 3921 7.168135 GCACTTTTATTGTTTTCAAGAGGTCAG 59.832 37.037 0.00 0.00 43.41 3.51
3628 3922 8.190784 CACTTTTATTGTTTTCAAGAGGTCAGT 58.809 33.333 0.00 0.00 43.41 3.41
3629 3923 8.749354 ACTTTTATTGTTTTCAAGAGGTCAGTT 58.251 29.630 0.00 0.00 43.41 3.16
3633 3927 5.689383 TGTTTTCAAGAGGTCAGTTATGC 57.311 39.130 0.00 0.00 0.00 3.14
3634 3928 5.376625 TGTTTTCAAGAGGTCAGTTATGCT 58.623 37.500 0.00 0.00 0.00 3.79
3635 3929 5.827797 TGTTTTCAAGAGGTCAGTTATGCTT 59.172 36.000 0.00 0.00 0.00 3.91
3636 3930 6.995686 TGTTTTCAAGAGGTCAGTTATGCTTA 59.004 34.615 0.00 0.00 0.00 3.09
3637 3931 7.665559 TGTTTTCAAGAGGTCAGTTATGCTTAT 59.334 33.333 0.00 0.00 0.00 1.73
3638 3932 8.515414 GTTTTCAAGAGGTCAGTTATGCTTATT 58.485 33.333 0.00 0.00 0.00 1.40
3639 3933 8.635765 TTTCAAGAGGTCAGTTATGCTTATTT 57.364 30.769 0.00 0.00 0.00 1.40
3640 3934 8.635765 TTCAAGAGGTCAGTTATGCTTATTTT 57.364 30.769 0.00 0.00 0.00 1.82
3641 3935 8.268850 TCAAGAGGTCAGTTATGCTTATTTTC 57.731 34.615 0.00 0.00 0.00 2.29
3642 3936 8.103305 TCAAGAGGTCAGTTATGCTTATTTTCT 58.897 33.333 0.00 0.00 0.00 2.52
3643 3937 8.734386 CAAGAGGTCAGTTATGCTTATTTTCTT 58.266 33.333 0.00 0.00 0.00 2.52
3644 3938 8.273780 AGAGGTCAGTTATGCTTATTTTCTTG 57.726 34.615 0.00 0.00 0.00 3.02
3645 3939 7.337942 AGAGGTCAGTTATGCTTATTTTCTTGG 59.662 37.037 0.00 0.00 0.00 3.61
3646 3940 6.948309 AGGTCAGTTATGCTTATTTTCTTGGT 59.052 34.615 0.00 0.00 0.00 3.67
3647 3941 8.107095 AGGTCAGTTATGCTTATTTTCTTGGTA 58.893 33.333 0.00 0.00 0.00 3.25
3648 3942 8.903820 GGTCAGTTATGCTTATTTTCTTGGTAT 58.096 33.333 0.00 0.00 0.00 2.73
3649 3943 9.722056 GTCAGTTATGCTTATTTTCTTGGTATG 57.278 33.333 0.00 0.00 0.00 2.39
3650 3944 9.679661 TCAGTTATGCTTATTTTCTTGGTATGA 57.320 29.630 0.00 0.00 0.00 2.15
3653 3947 9.899226 GTTATGCTTATTTTCTTGGTATGATCC 57.101 33.333 0.00 0.00 0.00 3.36
3654 3948 9.866655 TTATGCTTATTTTCTTGGTATGATCCT 57.133 29.630 0.00 0.00 0.00 3.24
3655 3949 7.572523 TGCTTATTTTCTTGGTATGATCCTG 57.427 36.000 0.00 0.00 0.00 3.86
3656 3950 7.118723 TGCTTATTTTCTTGGTATGATCCTGT 58.881 34.615 0.00 0.00 0.00 4.00
3657 3951 7.067372 TGCTTATTTTCTTGGTATGATCCTGTG 59.933 37.037 0.00 0.00 0.00 3.66
3658 3952 7.067494 GCTTATTTTCTTGGTATGATCCTGTGT 59.933 37.037 0.00 0.00 0.00 3.72
3659 3953 8.877864 TTATTTTCTTGGTATGATCCTGTGTT 57.122 30.769 0.00 0.00 0.00 3.32
3660 3954 6.573664 TTTTCTTGGTATGATCCTGTGTTG 57.426 37.500 0.00 0.00 0.00 3.33
3661 3955 4.908601 TCTTGGTATGATCCTGTGTTGT 57.091 40.909 0.00 0.00 0.00 3.32
3662 3956 6.367374 TTCTTGGTATGATCCTGTGTTGTA 57.633 37.500 0.00 0.00 0.00 2.41
3663 3957 5.977635 TCTTGGTATGATCCTGTGTTGTAG 58.022 41.667 0.00 0.00 0.00 2.74
3664 3958 5.483937 TCTTGGTATGATCCTGTGTTGTAGT 59.516 40.000 0.00 0.00 0.00 2.73
3665 3959 5.339008 TGGTATGATCCTGTGTTGTAGTC 57.661 43.478 0.00 0.00 0.00 2.59
3666 3960 5.023452 TGGTATGATCCTGTGTTGTAGTCT 58.977 41.667 0.00 0.00 0.00 3.24
3667 3961 5.105351 TGGTATGATCCTGTGTTGTAGTCTG 60.105 44.000 0.00 0.00 0.00 3.51
3668 3962 5.127194 GGTATGATCCTGTGTTGTAGTCTGA 59.873 44.000 0.00 0.00 0.00 3.27
3669 3963 5.745312 ATGATCCTGTGTTGTAGTCTGAA 57.255 39.130 0.00 0.00 0.00 3.02
3670 3964 4.883083 TGATCCTGTGTTGTAGTCTGAAC 58.117 43.478 0.00 0.00 0.00 3.18
3671 3965 4.588951 TGATCCTGTGTTGTAGTCTGAACT 59.411 41.667 0.00 0.00 39.66 3.01
3672 3966 4.585955 TCCTGTGTTGTAGTCTGAACTC 57.414 45.455 0.00 0.00 36.92 3.01
3673 3967 3.321111 TCCTGTGTTGTAGTCTGAACTCC 59.679 47.826 0.00 0.00 36.92 3.85
3674 3968 3.069586 CCTGTGTTGTAGTCTGAACTCCA 59.930 47.826 0.00 0.00 36.92 3.86
3675 3969 4.262635 CCTGTGTTGTAGTCTGAACTCCAT 60.263 45.833 0.00 0.00 36.92 3.41
3676 3970 5.290493 TGTGTTGTAGTCTGAACTCCATT 57.710 39.130 0.00 0.00 36.92 3.16
3677 3971 6.413783 TGTGTTGTAGTCTGAACTCCATTA 57.586 37.500 0.00 0.00 36.92 1.90
3678 3972 6.822442 TGTGTTGTAGTCTGAACTCCATTAA 58.178 36.000 0.00 0.00 36.92 1.40
3679 3973 7.450074 TGTGTTGTAGTCTGAACTCCATTAAT 58.550 34.615 0.00 0.00 36.92 1.40
3680 3974 7.387673 TGTGTTGTAGTCTGAACTCCATTAATG 59.612 37.037 8.58 8.58 36.92 1.90
3681 3975 7.602644 GTGTTGTAGTCTGAACTCCATTAATGA 59.397 37.037 17.23 2.58 36.92 2.57
3682 3976 8.154203 TGTTGTAGTCTGAACTCCATTAATGAA 58.846 33.333 17.23 0.00 36.92 2.57
3683 3977 8.443937 GTTGTAGTCTGAACTCCATTAATGAAC 58.556 37.037 17.23 4.39 36.92 3.18
3684 3978 7.907389 TGTAGTCTGAACTCCATTAATGAACT 58.093 34.615 17.23 8.75 36.92 3.01
3685 3979 9.031537 TGTAGTCTGAACTCCATTAATGAACTA 57.968 33.333 17.23 7.95 36.92 2.24
3686 3980 9.303537 GTAGTCTGAACTCCATTAATGAACTAC 57.696 37.037 17.23 14.19 36.92 2.73
3687 3981 7.907389 AGTCTGAACTCCATTAATGAACTACA 58.093 34.615 17.23 9.88 0.00 2.74
3688 3982 8.543774 AGTCTGAACTCCATTAATGAACTACAT 58.456 33.333 17.23 0.00 41.45 2.29
3689 3983 8.821894 GTCTGAACTCCATTAATGAACTACATC 58.178 37.037 17.23 6.36 38.38 3.06
3690 3984 8.539544 TCTGAACTCCATTAATGAACTACATCA 58.460 33.333 17.23 9.99 38.38 3.07
3691 3985 9.166173 CTGAACTCCATTAATGAACTACATCAA 57.834 33.333 17.23 0.00 38.38 2.57
3692 3986 9.685276 TGAACTCCATTAATGAACTACATCAAT 57.315 29.630 17.23 0.00 38.38 2.57
3710 4004 8.766994 ACATCAATATAACAATTTAGCAGGGT 57.233 30.769 0.00 0.00 0.00 4.34
3711 4005 9.860650 ACATCAATATAACAATTTAGCAGGGTA 57.139 29.630 0.00 0.00 0.00 3.69
3715 4009 9.445786 CAATATAACAATTTAGCAGGGTAAACG 57.554 33.333 5.88 3.94 0.00 3.60
3716 4010 8.741603 ATATAACAATTTAGCAGGGTAAACGT 57.258 30.769 5.88 4.48 0.00 3.99
3717 4011 9.835389 ATATAACAATTTAGCAGGGTAAACGTA 57.165 29.630 5.88 0.00 0.00 3.57
3718 4012 6.880942 AACAATTTAGCAGGGTAAACGTAA 57.119 33.333 5.88 0.00 0.00 3.18
3719 4013 6.245115 ACAATTTAGCAGGGTAAACGTAAC 57.755 37.500 5.88 0.00 0.00 2.50
3720 4014 5.764192 ACAATTTAGCAGGGTAAACGTAACA 59.236 36.000 5.88 0.00 0.00 2.41
3721 4015 6.262720 ACAATTTAGCAGGGTAAACGTAACAA 59.737 34.615 5.88 0.00 0.00 2.83
3722 4016 5.671742 TTTAGCAGGGTAAACGTAACAAC 57.328 39.130 0.00 0.00 0.00 3.32
3723 4017 3.196939 AGCAGGGTAAACGTAACAACA 57.803 42.857 0.00 0.00 0.00 3.33
3724 4018 3.746940 AGCAGGGTAAACGTAACAACAT 58.253 40.909 0.00 0.00 0.00 2.71
3725 4019 3.500680 AGCAGGGTAAACGTAACAACATG 59.499 43.478 0.00 0.00 0.00 3.21
3726 4020 3.499157 GCAGGGTAAACGTAACAACATGA 59.501 43.478 0.00 0.00 0.00 3.07
3727 4021 4.023878 GCAGGGTAAACGTAACAACATGAA 60.024 41.667 0.00 0.00 0.00 2.57
3728 4022 5.505985 GCAGGGTAAACGTAACAACATGAAA 60.506 40.000 0.00 0.00 0.00 2.69
3729 4023 6.496571 CAGGGTAAACGTAACAACATGAAAA 58.503 36.000 0.00 0.00 0.00 2.29
3730 4024 6.973474 CAGGGTAAACGTAACAACATGAAAAA 59.027 34.615 0.00 0.00 0.00 1.94
3756 4050 2.252976 AAGATAGCTAGCTTGCTGGC 57.747 50.000 29.36 20.69 43.87 4.85
3757 4051 1.126488 AGATAGCTAGCTTGCTGGCA 58.874 50.000 29.36 12.78 43.87 4.92
3758 4052 1.070445 AGATAGCTAGCTTGCTGGCAG 59.930 52.381 29.36 10.94 43.87 4.85
3759 4053 1.069823 GATAGCTAGCTTGCTGGCAGA 59.930 52.381 29.36 17.60 43.87 4.26
3760 4054 0.463204 TAGCTAGCTTGCTGGCAGAG 59.537 55.000 29.36 8.91 43.87 3.35
3761 4055 1.220206 GCTAGCTTGCTGGCAGAGA 59.780 57.895 20.86 4.23 34.17 3.10
3762 4056 0.179051 GCTAGCTTGCTGGCAGAGAT 60.179 55.000 20.86 9.07 34.17 2.75
3763 4057 1.868469 CTAGCTTGCTGGCAGAGATC 58.132 55.000 20.86 0.00 34.17 2.75
3764 4058 1.413445 CTAGCTTGCTGGCAGAGATCT 59.587 52.381 20.86 11.41 34.17 2.75
3765 4059 0.178533 AGCTTGCTGGCAGAGATCTC 59.821 55.000 20.86 15.29 34.17 2.75
3766 4060 0.178533 GCTTGCTGGCAGAGATCTCT 59.821 55.000 19.92 19.92 41.37 3.10
3767 4061 1.407162 GCTTGCTGGCAGAGATCTCTT 60.407 52.381 22.95 5.71 37.98 2.85
3768 4062 2.940527 GCTTGCTGGCAGAGATCTCTTT 60.941 50.000 22.95 0.00 37.98 2.52
3769 4063 2.687700 TGCTGGCAGAGATCTCTTTC 57.312 50.000 22.95 16.96 37.98 2.62
3770 4064 2.186243 TGCTGGCAGAGATCTCTTTCT 58.814 47.619 22.95 0.00 37.98 2.52
3771 4065 2.570752 TGCTGGCAGAGATCTCTTTCTT 59.429 45.455 22.95 0.00 37.98 2.52
3772 4066 3.008813 TGCTGGCAGAGATCTCTTTCTTT 59.991 43.478 22.95 0.00 37.98 2.52
3773 4067 4.223700 TGCTGGCAGAGATCTCTTTCTTTA 59.776 41.667 22.95 5.99 37.98 1.85
3774 4068 4.570369 GCTGGCAGAGATCTCTTTCTTTAC 59.430 45.833 22.95 8.43 37.98 2.01
3775 4069 5.091261 TGGCAGAGATCTCTTTCTTTACC 57.909 43.478 22.95 14.56 37.98 2.85
3776 4070 4.780021 TGGCAGAGATCTCTTTCTTTACCT 59.220 41.667 22.95 0.00 37.98 3.08
3777 4071 5.249393 TGGCAGAGATCTCTTTCTTTACCTT 59.751 40.000 22.95 0.00 37.98 3.50
3778 4072 6.440647 TGGCAGAGATCTCTTTCTTTACCTTA 59.559 38.462 22.95 0.00 37.98 2.69
3779 4073 7.038302 TGGCAGAGATCTCTTTCTTTACCTTAA 60.038 37.037 22.95 0.00 37.98 1.85
3780 4074 7.824779 GGCAGAGATCTCTTTCTTTACCTTAAA 59.175 37.037 22.95 0.00 37.98 1.52
3781 4075 9.389755 GCAGAGATCTCTTTCTTTACCTTAAAT 57.610 33.333 22.95 0.00 37.98 1.40
3809 4103 9.120538 TCATAATGTAAAGCAATCTCTTAACCC 57.879 33.333 0.00 0.00 0.00 4.11
3810 4104 8.902806 CATAATGTAAAGCAATCTCTTAACCCA 58.097 33.333 0.00 0.00 0.00 4.51
3811 4105 7.396540 AATGTAAAGCAATCTCTTAACCCAG 57.603 36.000 0.00 0.00 0.00 4.45
3812 4106 5.253330 TGTAAAGCAATCTCTTAACCCAGG 58.747 41.667 0.00 0.00 0.00 4.45
3813 4107 4.388577 AAAGCAATCTCTTAACCCAGGT 57.611 40.909 0.00 0.00 0.00 4.00
3814 4108 3.356529 AGCAATCTCTTAACCCAGGTG 57.643 47.619 0.00 0.00 0.00 4.00
3815 4109 2.025887 AGCAATCTCTTAACCCAGGTGG 60.026 50.000 0.00 0.00 41.37 4.61
3816 4110 2.026262 GCAATCTCTTAACCCAGGTGGA 60.026 50.000 0.00 0.00 37.39 4.02
3817 4111 3.561313 GCAATCTCTTAACCCAGGTGGAA 60.561 47.826 0.00 0.00 37.39 3.53
3818 4112 4.662278 CAATCTCTTAACCCAGGTGGAAA 58.338 43.478 0.00 0.00 37.39 3.13
3819 4113 5.076873 CAATCTCTTAACCCAGGTGGAAAA 58.923 41.667 0.00 0.00 37.39 2.29
3820 4114 5.536497 ATCTCTTAACCCAGGTGGAAAAT 57.464 39.130 0.00 0.00 37.39 1.82
3821 4115 5.333566 TCTCTTAACCCAGGTGGAAAATT 57.666 39.130 0.00 0.00 37.39 1.82
3822 4116 5.711698 TCTCTTAACCCAGGTGGAAAATTT 58.288 37.500 0.00 0.00 37.39 1.82
3823 4117 6.140377 TCTCTTAACCCAGGTGGAAAATTTT 58.860 36.000 2.28 2.28 37.39 1.82
3824 4118 7.299134 TCTCTTAACCCAGGTGGAAAATTTTA 58.701 34.615 2.75 0.00 37.39 1.52
3825 4119 7.450323 TCTCTTAACCCAGGTGGAAAATTTTAG 59.550 37.037 2.75 0.00 37.39 1.85
3826 4120 4.617253 AACCCAGGTGGAAAATTTTAGC 57.383 40.909 2.75 0.00 37.39 3.09
3827 4121 3.856900 ACCCAGGTGGAAAATTTTAGCT 58.143 40.909 2.75 1.47 37.39 3.32
3828 4122 4.231273 ACCCAGGTGGAAAATTTTAGCTT 58.769 39.130 2.75 0.00 37.39 3.74
3829 4123 4.658435 ACCCAGGTGGAAAATTTTAGCTTT 59.342 37.500 2.75 0.00 37.39 3.51
3830 4124 5.221641 ACCCAGGTGGAAAATTTTAGCTTTC 60.222 40.000 2.75 0.00 37.39 2.62
3831 4125 5.221621 CCCAGGTGGAAAATTTTAGCTTTCA 60.222 40.000 2.75 0.00 37.39 2.69
3832 4126 5.928264 CCAGGTGGAAAATTTTAGCTTTCAG 59.072 40.000 2.75 0.00 37.39 3.02
3833 4127 6.239289 CCAGGTGGAAAATTTTAGCTTTCAGA 60.239 38.462 2.75 0.00 37.39 3.27
3834 4128 6.642540 CAGGTGGAAAATTTTAGCTTTCAGAC 59.357 38.462 2.75 0.00 33.96 3.51
3835 4129 6.323739 AGGTGGAAAATTTTAGCTTTCAGACA 59.676 34.615 2.75 0.00 33.96 3.41
3836 4130 7.015584 AGGTGGAAAATTTTAGCTTTCAGACAT 59.984 33.333 2.75 0.00 33.96 3.06
3837 4131 7.657354 GGTGGAAAATTTTAGCTTTCAGACATT 59.343 33.333 2.75 0.00 33.96 2.71
3838 4132 9.045223 GTGGAAAATTTTAGCTTTCAGACATTT 57.955 29.630 2.75 0.00 33.96 2.32
3839 4133 9.260002 TGGAAAATTTTAGCTTTCAGACATTTC 57.740 29.630 2.75 0.00 33.96 2.17
3840 4134 8.712363 GGAAAATTTTAGCTTTCAGACATTTCC 58.288 33.333 2.75 0.00 35.62 3.13
3841 4135 9.260002 GAAAATTTTAGCTTTCAGACATTTCCA 57.740 29.630 2.75 0.00 32.80 3.53
3842 4136 9.783081 AAAATTTTAGCTTTCAGACATTTCCAT 57.217 25.926 0.37 0.00 0.00 3.41
3843 4137 8.992835 AATTTTAGCTTTCAGACATTTCCATC 57.007 30.769 0.00 0.00 0.00 3.51
3844 4138 6.515272 TTTAGCTTTCAGACATTTCCATCC 57.485 37.500 0.00 0.00 0.00 3.51
3845 4139 4.313020 AGCTTTCAGACATTTCCATCCT 57.687 40.909 0.00 0.00 0.00 3.24
3846 4140 4.670765 AGCTTTCAGACATTTCCATCCTT 58.329 39.130 0.00 0.00 0.00 3.36
3847 4141 4.704057 AGCTTTCAGACATTTCCATCCTTC 59.296 41.667 0.00 0.00 0.00 3.46
3884 4178 9.362539 CATATCTGTCACATGATTATTCATCGA 57.637 33.333 0.00 0.00 40.70 3.59
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
124 125 1.592131 GGTGTGGTGCGTCGTGTAA 60.592 57.895 0.00 0.00 0.00 2.41
246 248 5.048294 TCTCTTCTTATTACGACTGTGCACA 60.048 40.000 20.37 20.37 0.00 4.57
257 292 9.213799 CTATGCTGGGAATTCTCTTCTTATTAC 57.786 37.037 6.92 0.00 0.00 1.89
304 343 6.592994 CACCATATATGTGAGTCATAAGCCTG 59.407 42.308 11.73 0.00 41.57 4.85
341 383 1.202256 CGCACGCCTGTATCTAACTGA 60.202 52.381 0.00 0.00 0.00 3.41
342 384 1.200483 CGCACGCCTGTATCTAACTG 58.800 55.000 0.00 0.00 0.00 3.16
343 385 1.100510 TCGCACGCCTGTATCTAACT 58.899 50.000 0.00 0.00 0.00 2.24
344 386 1.852895 CTTCGCACGCCTGTATCTAAC 59.147 52.381 0.00 0.00 0.00 2.34
345 387 1.801395 GCTTCGCACGCCTGTATCTAA 60.801 52.381 0.00 0.00 0.00 2.10
346 388 0.248907 GCTTCGCACGCCTGTATCTA 60.249 55.000 0.00 0.00 0.00 1.98
347 389 1.519455 GCTTCGCACGCCTGTATCT 60.519 57.895 0.00 0.00 0.00 1.98
355 419 2.500183 GAAGAAGTGGCTTCGCACGC 62.500 60.000 3.60 0.00 44.34 5.34
448 527 4.824515 AGGACGGCCCTCGAGAGG 62.825 72.222 15.71 14.55 43.31 3.69
492 571 0.959372 ACGAGATGAACCTCCGTCGT 60.959 55.000 0.00 0.00 35.90 4.34
608 740 0.460811 CCGTTGAGATGCAGCTGCTA 60.461 55.000 36.61 24.05 42.66 3.49
629 761 3.876589 ATGGTCGCTGACGCCGTTT 62.877 57.895 0.00 0.00 38.01 3.60
633 765 4.451150 TCCATGGTCGCTGACGCC 62.451 66.667 12.58 0.00 39.84 5.68
634 766 2.887568 CTCCATGGTCGCTGACGC 60.888 66.667 12.58 0.00 39.84 5.19
636 768 1.364626 CTTGCTCCATGGTCGCTGAC 61.365 60.000 22.80 0.79 0.00 3.51
638 770 2.758089 GCTTGCTCCATGGTCGCTG 61.758 63.158 22.80 17.60 0.00 5.18
640 772 2.437359 AGCTTGCTCCATGGTCGC 60.437 61.111 12.58 15.90 0.00 5.19
837 1064 2.124736 GCCAATGCCTGCCGAGTA 60.125 61.111 0.00 0.00 0.00 2.59
844 1071 2.898920 ATCCTCGGTGCCAATGCCTG 62.899 60.000 0.00 0.00 36.33 4.85
872 1099 1.401539 GGGAGCAATTCGTCAAACAGC 60.402 52.381 0.00 0.00 0.00 4.40
905 1132 0.839277 TGATGGCACGGATCAAGGAT 59.161 50.000 0.00 0.00 0.00 3.24
910 1137 1.026182 GCAGTTGATGGCACGGATCA 61.026 55.000 0.00 0.00 0.00 2.92
976 1203 1.355210 CTTGCAACGCGGTTGAAGT 59.645 52.632 20.50 0.00 45.28 3.01
1094 1321 7.445402 GCTTCTGCTGTAAATCCCATCTTAATA 59.555 37.037 0.00 0.00 36.03 0.98
1229 1456 8.287439 TGAAAAGAATGTTGTAGGAGAAAACA 57.713 30.769 0.00 0.00 38.13 2.83
1366 1596 0.178990 ACCCTCTTTCAACAGGCCAC 60.179 55.000 5.01 0.00 0.00 5.01
1472 1703 0.179156 GCATGAACCTTGCACATCCG 60.179 55.000 0.00 0.00 39.90 4.18
1632 1863 9.612620 CAATATTTGGTTGAACACTCTTTCTAC 57.387 33.333 0.00 0.00 32.44 2.59
1911 2142 0.328258 ATGCACTACCTCACCAACCC 59.672 55.000 0.00 0.00 0.00 4.11
1925 2156 6.199908 TGCCGCATTTTTGTAAATATATGCAC 59.800 34.615 0.00 0.00 32.75 4.57
2081 2312 6.575162 ACCACTAATAAGTTGGCTGAAAAG 57.425 37.500 0.00 0.00 31.97 2.27
2091 2322 9.052759 CACAAGTACAGAAACCACTAATAAGTT 57.947 33.333 0.00 0.00 31.97 2.66
2092 2323 7.660208 CCACAAGTACAGAAACCACTAATAAGT 59.340 37.037 0.00 0.00 35.91 2.24
2111 2343 2.242043 CTTCTCCCATTTGCCACAAGT 58.758 47.619 0.00 0.00 0.00 3.16
2209 2443 4.769345 AACCCTTCCATTTTTGCAAAGA 57.231 36.364 12.41 8.58 0.00 2.52
2278 2512 3.760151 TGCTATAAGTACACACGTCAGGT 59.240 43.478 0.00 0.00 0.00 4.00
2383 2617 7.895962 AGTATGCTATAGGTGATAACATCTGGA 59.104 37.037 1.04 0.00 38.05 3.86
2424 2658 7.164122 TGCATCATCTATCCTTCCATTCTTAC 58.836 38.462 0.00 0.00 0.00 2.34
2908 3142 4.218312 AGAAAAGGTTTCAATCAGTGCCT 58.782 39.130 3.74 0.00 0.00 4.75
2979 3216 1.575447 GCATCTCCCCTTTCCCCACT 61.575 60.000 0.00 0.00 0.00 4.00
2980 3217 1.076705 GCATCTCCCCTTTCCCCAC 60.077 63.158 0.00 0.00 0.00 4.61
2981 3218 2.316586 GGCATCTCCCCTTTCCCCA 61.317 63.158 0.00 0.00 0.00 4.96
2982 3219 2.290021 CTGGCATCTCCCCTTTCCCC 62.290 65.000 0.00 0.00 0.00 4.81
2983 3220 1.228510 CTGGCATCTCCCCTTTCCC 59.771 63.158 0.00 0.00 0.00 3.97
2984 3221 0.106967 GTCTGGCATCTCCCCTTTCC 60.107 60.000 0.00 0.00 0.00 3.13
2985 3222 0.620556 TGTCTGGCATCTCCCCTTTC 59.379 55.000 0.00 0.00 0.00 2.62
2986 3223 1.302907 ATGTCTGGCATCTCCCCTTT 58.697 50.000 0.00 0.00 30.67 3.11
2987 3224 1.064166 CAATGTCTGGCATCTCCCCTT 60.064 52.381 0.00 0.00 36.67 3.95
2988 3225 0.549950 CAATGTCTGGCATCTCCCCT 59.450 55.000 0.00 0.00 36.67 4.79
2989 3226 0.257039 ACAATGTCTGGCATCTCCCC 59.743 55.000 0.00 0.00 36.67 4.81
2990 3227 1.386533 CACAATGTCTGGCATCTCCC 58.613 55.000 0.00 0.00 36.67 4.30
2991 3228 0.737219 GCACAATGTCTGGCATCTCC 59.263 55.000 0.00 0.00 36.67 3.71
2992 3229 0.737219 GGCACAATGTCTGGCATCTC 59.263 55.000 0.00 0.00 36.67 2.75
2993 3230 0.330604 AGGCACAATGTCTGGCATCT 59.669 50.000 0.00 0.00 36.67 2.90
2994 3231 1.135199 CAAGGCACAATGTCTGGCATC 60.135 52.381 0.00 0.00 36.67 3.91
2995 3232 0.892755 CAAGGCACAATGTCTGGCAT 59.107 50.000 0.00 0.00 40.03 4.40
2996 3233 0.178995 TCAAGGCACAATGTCTGGCA 60.179 50.000 0.69 0.00 29.54 4.92
2997 3234 1.180029 ATCAAGGCACAATGTCTGGC 58.820 50.000 0.00 0.00 29.54 4.85
2998 3235 3.614092 AGTATCAAGGCACAATGTCTGG 58.386 45.455 0.00 0.00 29.54 3.86
2999 3236 4.331992 CAGAGTATCAAGGCACAATGTCTG 59.668 45.833 0.00 0.00 37.82 3.51
3000 3237 4.511527 CAGAGTATCAAGGCACAATGTCT 58.488 43.478 0.00 0.00 37.82 3.41
3001 3238 3.624861 CCAGAGTATCAAGGCACAATGTC 59.375 47.826 0.00 0.00 37.82 3.06
3002 3239 3.264193 TCCAGAGTATCAAGGCACAATGT 59.736 43.478 0.00 0.00 37.82 2.71
3003 3240 3.624861 GTCCAGAGTATCAAGGCACAATG 59.375 47.826 0.00 0.00 37.82 2.82
3004 3241 3.521126 AGTCCAGAGTATCAAGGCACAAT 59.479 43.478 0.00 0.00 37.82 2.71
3005 3242 2.906389 AGTCCAGAGTATCAAGGCACAA 59.094 45.455 0.00 0.00 37.82 3.33
3006 3243 2.234661 CAGTCCAGAGTATCAAGGCACA 59.765 50.000 0.00 0.00 37.82 4.57
3007 3244 2.898705 CAGTCCAGAGTATCAAGGCAC 58.101 52.381 0.00 0.00 37.82 5.01
3008 3245 1.208052 GCAGTCCAGAGTATCAAGGCA 59.792 52.381 0.00 0.00 37.82 4.75
3009 3246 1.484240 AGCAGTCCAGAGTATCAAGGC 59.516 52.381 0.00 0.00 37.82 4.35
3010 3247 5.537188 GATTAGCAGTCCAGAGTATCAAGG 58.463 45.833 0.00 0.00 37.82 3.61
3011 3248 5.009110 TCGATTAGCAGTCCAGAGTATCAAG 59.991 44.000 0.00 0.00 37.82 3.02
3012 3249 4.887655 TCGATTAGCAGTCCAGAGTATCAA 59.112 41.667 0.00 0.00 37.82 2.57
3013 3250 4.461198 TCGATTAGCAGTCCAGAGTATCA 58.539 43.478 0.00 0.00 37.82 2.15
3014 3251 4.083003 CCTCGATTAGCAGTCCAGAGTATC 60.083 50.000 0.00 0.00 0.00 2.24
3015 3252 3.823873 CCTCGATTAGCAGTCCAGAGTAT 59.176 47.826 0.00 0.00 0.00 2.12
3020 3257 0.249657 GGCCTCGATTAGCAGTCCAG 60.250 60.000 0.00 0.00 0.00 3.86
3045 3282 7.983484 GTCGGAAGATATAACCTACAAAGGAAA 59.017 37.037 0.00 0.00 44.38 3.13
3048 3285 6.041751 AGGTCGGAAGATATAACCTACAAAGG 59.958 42.308 0.00 0.00 46.09 3.11
3061 3298 6.110411 ACAAGAAGAAAAGGTCGGAAGATA 57.890 37.500 0.00 0.00 45.19 1.98
3066 3303 4.950205 ACTACAAGAAGAAAAGGTCGGA 57.050 40.909 0.00 0.00 0.00 4.55
3069 3306 6.995364 AGACCTACTACAAGAAGAAAAGGTC 58.005 40.000 9.61 9.61 41.50 3.85
3080 3317 8.746530 TGACCTACATTTTAGACCTACTACAAG 58.253 37.037 0.00 0.00 0.00 3.16
3089 3326 6.937392 AGAGAAGTGACCTACATTTTAGACC 58.063 40.000 0.00 0.00 0.00 3.85
3100 3337 9.268282 AGAATTACCATTAAGAGAAGTGACCTA 57.732 33.333 0.00 0.00 0.00 3.08
3116 3353 4.292306 ACAAGTTCCTCCCAGAATTACCAT 59.708 41.667 0.00 0.00 0.00 3.55
3118 3355 4.302559 ACAAGTTCCTCCCAGAATTACC 57.697 45.455 0.00 0.00 0.00 2.85
3158 3397 2.096496 GCCATTCTCAGAATGGTGAACG 59.904 50.000 36.54 18.06 46.81 3.95
3161 3400 4.657504 AGATAGCCATTCTCAGAATGGTGA 59.342 41.667 36.54 27.70 46.81 4.02
3176 3416 5.307976 AGCCATATAGAAACACAGATAGCCA 59.692 40.000 0.00 0.00 0.00 4.75
3178 3418 5.641209 CCAGCCATATAGAAACACAGATAGC 59.359 44.000 0.00 0.00 0.00 2.97
3202 3442 6.402658 GCTTAGTTGACCATTGAAGTAGAAGC 60.403 42.308 0.00 0.00 0.00 3.86
3242 3498 7.169158 AGGTCAAATCAAAGACTGACAAAAA 57.831 32.000 11.11 0.00 39.97 1.94
3285 3541 6.899089 TCATTATAGCAGACAAGGAAATGGA 58.101 36.000 0.00 0.00 0.00 3.41
3288 3544 7.446625 GTCCATCATTATAGCAGACAAGGAAAT 59.553 37.037 0.00 0.00 0.00 2.17
3300 3556 4.582869 TGCCAGATGTCCATCATTATAGC 58.417 43.478 9.76 3.95 40.22 2.97
3317 3573 2.159198 GGCTATTGACAATGGTTGCCAG 60.159 50.000 20.95 8.61 36.75 4.85
3349 3643 7.958053 TCATATCATGATCAGCTGTAAACAG 57.042 36.000 12.53 5.73 39.55 3.16
3380 3674 0.394565 GTGAGTCCACTGGCAGAACT 59.605 55.000 23.66 19.78 40.10 3.01
3409 3703 7.147776 GGGAATACAGAAACTAACTGGCTACTA 60.148 40.741 0.00 0.00 39.38 1.82
3412 3706 5.724854 AGGGAATACAGAAACTAACTGGCTA 59.275 40.000 0.00 0.00 39.38 3.93
3416 3710 7.745620 ACAAAGGGAATACAGAAACTAACTG 57.254 36.000 0.00 0.00 40.68 3.16
3428 3722 9.406828 GTCAAATGTAAAGAACAAAGGGAATAC 57.593 33.333 0.00 0.00 42.70 1.89
3439 3733 6.385649 TGTTCCCAGTCAAATGTAAAGAAC 57.614 37.500 0.00 0.00 33.44 3.01
3469 3763 5.580998 AGTGGTAATGGACTCTAGTTGAGA 58.419 41.667 8.66 0.00 45.39 3.27
3471 3765 5.330233 TGAGTGGTAATGGACTCTAGTTGA 58.670 41.667 0.00 0.00 39.54 3.18
3472 3766 5.661056 TGAGTGGTAATGGACTCTAGTTG 57.339 43.478 0.00 0.00 39.54 3.16
3474 3768 6.681729 TTTTGAGTGGTAATGGACTCTAGT 57.318 37.500 0.00 0.00 39.54 2.57
3475 3769 8.043710 AGAATTTTGAGTGGTAATGGACTCTAG 58.956 37.037 0.00 0.00 39.54 2.43
3476 3770 7.918076 AGAATTTTGAGTGGTAATGGACTCTA 58.082 34.615 0.00 0.00 39.54 2.43
3477 3771 6.784031 AGAATTTTGAGTGGTAATGGACTCT 58.216 36.000 0.00 0.00 39.54 3.24
3478 3772 8.738645 ATAGAATTTTGAGTGGTAATGGACTC 57.261 34.615 0.00 0.00 39.31 3.36
3479 3773 9.178758 GAATAGAATTTTGAGTGGTAATGGACT 57.821 33.333 0.00 0.00 0.00 3.85
3480 3774 8.956426 TGAATAGAATTTTGAGTGGTAATGGAC 58.044 33.333 0.00 0.00 0.00 4.02
3567 3861 8.874744 AGAAGCCATGCAATATTGTCTATATT 57.125 30.769 16.61 6.13 39.49 1.28
3568 3862 8.874744 AAGAAGCCATGCAATATTGTCTATAT 57.125 30.769 16.61 2.29 0.00 0.86
3569 3863 8.696043 AAAGAAGCCATGCAATATTGTCTATA 57.304 30.769 16.61 0.11 0.00 1.31
3570 3864 7.592885 AAAGAAGCCATGCAATATTGTCTAT 57.407 32.000 16.61 6.72 0.00 1.98
3571 3865 8.518430 TTAAAGAAGCCATGCAATATTGTCTA 57.482 30.769 16.61 4.73 0.00 2.59
3572 3866 5.927281 AAAGAAGCCATGCAATATTGTCT 57.073 34.783 16.61 6.94 0.00 3.41
3573 3867 8.652810 AATTAAAGAAGCCATGCAATATTGTC 57.347 30.769 16.61 9.60 0.00 3.18
3574 3868 8.885722 CAAATTAAAGAAGCCATGCAATATTGT 58.114 29.630 16.61 0.00 0.00 2.71
3575 3869 8.339714 CCAAATTAAAGAAGCCATGCAATATTG 58.660 33.333 11.27 11.27 0.00 1.90
3576 3870 7.012610 GCCAAATTAAAGAAGCCATGCAATATT 59.987 33.333 0.00 0.00 0.00 1.28
3577 3871 6.484308 GCCAAATTAAAGAAGCCATGCAATAT 59.516 34.615 0.00 0.00 0.00 1.28
3578 3872 5.816777 GCCAAATTAAAGAAGCCATGCAATA 59.183 36.000 0.00 0.00 0.00 1.90
3579 3873 4.637091 GCCAAATTAAAGAAGCCATGCAAT 59.363 37.500 0.00 0.00 0.00 3.56
3580 3874 4.002316 GCCAAATTAAAGAAGCCATGCAA 58.998 39.130 0.00 0.00 0.00 4.08
3581 3875 3.007723 TGCCAAATTAAAGAAGCCATGCA 59.992 39.130 0.00 0.00 0.00 3.96
3582 3876 3.371898 GTGCCAAATTAAAGAAGCCATGC 59.628 43.478 0.00 0.00 0.00 4.06
3583 3877 4.824289 AGTGCCAAATTAAAGAAGCCATG 58.176 39.130 0.00 0.00 0.00 3.66
3584 3878 5.488262 AAGTGCCAAATTAAAGAAGCCAT 57.512 34.783 0.00 0.00 0.00 4.40
3585 3879 4.953940 AAGTGCCAAATTAAAGAAGCCA 57.046 36.364 0.00 0.00 0.00 4.75
3586 3880 7.905604 ATAAAAGTGCCAAATTAAAGAAGCC 57.094 32.000 0.00 0.00 0.00 4.35
3587 3881 8.773645 ACAATAAAAGTGCCAAATTAAAGAAGC 58.226 29.630 0.00 0.00 0.00 3.86
3595 3889 9.171877 TCTTGAAAACAATAAAAGTGCCAAATT 57.828 25.926 0.00 0.00 0.00 1.82
3596 3890 8.729805 TCTTGAAAACAATAAAAGTGCCAAAT 57.270 26.923 0.00 0.00 0.00 2.32
3597 3891 7.279758 CCTCTTGAAAACAATAAAAGTGCCAAA 59.720 33.333 0.00 0.00 0.00 3.28
3598 3892 6.760770 CCTCTTGAAAACAATAAAAGTGCCAA 59.239 34.615 0.00 0.00 0.00 4.52
3599 3893 6.127196 ACCTCTTGAAAACAATAAAAGTGCCA 60.127 34.615 0.00 0.00 0.00 4.92
3600 3894 6.280643 ACCTCTTGAAAACAATAAAAGTGCC 58.719 36.000 0.00 0.00 0.00 5.01
3601 3895 6.978080 TGACCTCTTGAAAACAATAAAAGTGC 59.022 34.615 0.00 0.00 0.00 4.40
3602 3896 8.190784 ACTGACCTCTTGAAAACAATAAAAGTG 58.809 33.333 0.00 0.00 0.00 3.16
3603 3897 8.293699 ACTGACCTCTTGAAAACAATAAAAGT 57.706 30.769 0.00 0.00 0.00 2.66
3607 3901 8.296713 GCATAACTGACCTCTTGAAAACAATAA 58.703 33.333 0.00 0.00 0.00 1.40
3608 3902 7.665559 AGCATAACTGACCTCTTGAAAACAATA 59.334 33.333 0.00 0.00 0.00 1.90
3609 3903 6.491403 AGCATAACTGACCTCTTGAAAACAAT 59.509 34.615 0.00 0.00 0.00 2.71
3610 3904 5.827797 AGCATAACTGACCTCTTGAAAACAA 59.172 36.000 0.00 0.00 0.00 2.83
3611 3905 5.376625 AGCATAACTGACCTCTTGAAAACA 58.623 37.500 0.00 0.00 0.00 2.83
3612 3906 5.948992 AGCATAACTGACCTCTTGAAAAC 57.051 39.130 0.00 0.00 0.00 2.43
3613 3907 8.635765 AATAAGCATAACTGACCTCTTGAAAA 57.364 30.769 0.00 0.00 0.00 2.29
3614 3908 8.635765 AAATAAGCATAACTGACCTCTTGAAA 57.364 30.769 0.00 0.00 0.00 2.69
3615 3909 8.635765 AAAATAAGCATAACTGACCTCTTGAA 57.364 30.769 0.00 0.00 0.00 2.69
3616 3910 8.103305 AGAAAATAAGCATAACTGACCTCTTGA 58.897 33.333 0.00 0.00 0.00 3.02
3617 3911 8.273780 AGAAAATAAGCATAACTGACCTCTTG 57.726 34.615 0.00 0.00 0.00 3.02
3618 3912 8.734386 CAAGAAAATAAGCATAACTGACCTCTT 58.266 33.333 0.00 0.00 0.00 2.85
3619 3913 7.337942 CCAAGAAAATAAGCATAACTGACCTCT 59.662 37.037 0.00 0.00 0.00 3.69
3620 3914 7.121315 ACCAAGAAAATAAGCATAACTGACCTC 59.879 37.037 0.00 0.00 0.00 3.85
3621 3915 6.948309 ACCAAGAAAATAAGCATAACTGACCT 59.052 34.615 0.00 0.00 0.00 3.85
3622 3916 7.158099 ACCAAGAAAATAAGCATAACTGACC 57.842 36.000 0.00 0.00 0.00 4.02
3623 3917 9.722056 CATACCAAGAAAATAAGCATAACTGAC 57.278 33.333 0.00 0.00 0.00 3.51
3624 3918 9.679661 TCATACCAAGAAAATAAGCATAACTGA 57.320 29.630 0.00 0.00 0.00 3.41
3627 3921 9.899226 GGATCATACCAAGAAAATAAGCATAAC 57.101 33.333 0.00 0.00 0.00 1.89
3628 3922 9.866655 AGGATCATACCAAGAAAATAAGCATAA 57.133 29.630 0.00 0.00 0.00 1.90
3629 3923 9.288576 CAGGATCATACCAAGAAAATAAGCATA 57.711 33.333 0.00 0.00 0.00 3.14
3630 3924 7.781693 ACAGGATCATACCAAGAAAATAAGCAT 59.218 33.333 0.00 0.00 0.00 3.79
3631 3925 7.067372 CACAGGATCATACCAAGAAAATAAGCA 59.933 37.037 0.00 0.00 0.00 3.91
3632 3926 7.067494 ACACAGGATCATACCAAGAAAATAAGC 59.933 37.037 0.00 0.00 0.00 3.09
3633 3927 8.511604 ACACAGGATCATACCAAGAAAATAAG 57.488 34.615 0.00 0.00 0.00 1.73
3634 3928 8.739039 CAACACAGGATCATACCAAGAAAATAA 58.261 33.333 0.00 0.00 0.00 1.40
3635 3929 7.888021 ACAACACAGGATCATACCAAGAAAATA 59.112 33.333 0.00 0.00 0.00 1.40
3636 3930 6.721208 ACAACACAGGATCATACCAAGAAAAT 59.279 34.615 0.00 0.00 0.00 1.82
3637 3931 6.068010 ACAACACAGGATCATACCAAGAAAA 58.932 36.000 0.00 0.00 0.00 2.29
3638 3932 5.630121 ACAACACAGGATCATACCAAGAAA 58.370 37.500 0.00 0.00 0.00 2.52
3639 3933 5.241403 ACAACACAGGATCATACCAAGAA 57.759 39.130 0.00 0.00 0.00 2.52
3640 3934 4.908601 ACAACACAGGATCATACCAAGA 57.091 40.909 0.00 0.00 0.00 3.02
3641 3935 5.734720 ACTACAACACAGGATCATACCAAG 58.265 41.667 0.00 0.00 0.00 3.61
3642 3936 5.483937 AGACTACAACACAGGATCATACCAA 59.516 40.000 0.00 0.00 0.00 3.67
3643 3937 5.023452 AGACTACAACACAGGATCATACCA 58.977 41.667 0.00 0.00 0.00 3.25
3644 3938 5.127194 TCAGACTACAACACAGGATCATACC 59.873 44.000 0.00 0.00 0.00 2.73
3645 3939 6.208988 TCAGACTACAACACAGGATCATAC 57.791 41.667 0.00 0.00 0.00 2.39
3646 3940 6.437477 AGTTCAGACTACAACACAGGATCATA 59.563 38.462 0.00 0.00 33.32 2.15
3647 3941 5.247110 AGTTCAGACTACAACACAGGATCAT 59.753 40.000 0.00 0.00 33.32 2.45
3648 3942 4.588951 AGTTCAGACTACAACACAGGATCA 59.411 41.667 0.00 0.00 33.32 2.92
3649 3943 5.140747 AGTTCAGACTACAACACAGGATC 57.859 43.478 0.00 0.00 33.32 3.36
3650 3944 4.021016 GGAGTTCAGACTACAACACAGGAT 60.021 45.833 0.58 0.00 36.67 3.24
3651 3945 3.321111 GGAGTTCAGACTACAACACAGGA 59.679 47.826 0.58 0.00 36.67 3.86
3652 3946 3.069586 TGGAGTTCAGACTACAACACAGG 59.930 47.826 0.00 0.00 43.78 4.00
3653 3947 4.322080 TGGAGTTCAGACTACAACACAG 57.678 45.455 0.00 0.00 43.78 3.66
3660 3954 9.303537 GTAGTTCATTAATGGAGTTCAGACTAC 57.696 37.037 15.36 8.68 35.88 2.73
3661 3955 9.031537 TGTAGTTCATTAATGGAGTTCAGACTA 57.968 33.333 15.36 0.35 35.88 2.59
3662 3956 7.907389 TGTAGTTCATTAATGGAGTTCAGACT 58.093 34.615 15.36 1.27 39.32 3.24
3663 3957 8.723942 ATGTAGTTCATTAATGGAGTTCAGAC 57.276 34.615 15.36 5.58 32.08 3.51
3664 3958 8.539544 TGATGTAGTTCATTAATGGAGTTCAGA 58.460 33.333 15.36 2.86 36.83 3.27
3665 3959 8.722480 TGATGTAGTTCATTAATGGAGTTCAG 57.278 34.615 15.36 0.00 36.83 3.02
3666 3960 9.685276 ATTGATGTAGTTCATTAATGGAGTTCA 57.315 29.630 15.36 13.48 39.93 3.18
3684 3978 9.860650 ACCCTGCTAAATTGTTATATTGATGTA 57.139 29.630 0.00 0.00 0.00 2.29
3685 3979 8.766994 ACCCTGCTAAATTGTTATATTGATGT 57.233 30.769 0.00 0.00 0.00 3.06
3689 3983 9.445786 CGTTTACCCTGCTAAATTGTTATATTG 57.554 33.333 0.00 0.00 0.00 1.90
3690 3984 9.181061 ACGTTTACCCTGCTAAATTGTTATATT 57.819 29.630 0.00 0.00 0.00 1.28
3691 3985 8.741603 ACGTTTACCCTGCTAAATTGTTATAT 57.258 30.769 0.00 0.00 0.00 0.86
3692 3986 9.664332 TTACGTTTACCCTGCTAAATTGTTATA 57.336 29.630 0.00 0.00 0.00 0.98
3693 3987 8.453320 GTTACGTTTACCCTGCTAAATTGTTAT 58.547 33.333 0.00 0.00 0.00 1.89
3694 3988 7.443575 TGTTACGTTTACCCTGCTAAATTGTTA 59.556 33.333 0.00 0.00 0.00 2.41
3695 3989 6.262720 TGTTACGTTTACCCTGCTAAATTGTT 59.737 34.615 0.00 0.00 0.00 2.83
3696 3990 5.764192 TGTTACGTTTACCCTGCTAAATTGT 59.236 36.000 0.00 0.00 0.00 2.71
3697 3991 6.243811 TGTTACGTTTACCCTGCTAAATTG 57.756 37.500 0.00 0.00 0.00 2.32
3698 3992 6.262720 TGTTGTTACGTTTACCCTGCTAAATT 59.737 34.615 0.00 0.00 0.00 1.82
3699 3993 5.764192 TGTTGTTACGTTTACCCTGCTAAAT 59.236 36.000 0.00 0.00 0.00 1.40
3700 3994 5.121811 TGTTGTTACGTTTACCCTGCTAAA 58.878 37.500 0.00 0.00 0.00 1.85
3701 3995 4.701765 TGTTGTTACGTTTACCCTGCTAA 58.298 39.130 0.00 0.00 0.00 3.09
3702 3996 4.333913 TGTTGTTACGTTTACCCTGCTA 57.666 40.909 0.00 0.00 0.00 3.49
3703 3997 3.196939 TGTTGTTACGTTTACCCTGCT 57.803 42.857 0.00 0.00 0.00 4.24
3704 3998 3.499157 TCATGTTGTTACGTTTACCCTGC 59.501 43.478 0.00 0.00 0.00 4.85
3705 3999 5.676532 TTCATGTTGTTACGTTTACCCTG 57.323 39.130 0.00 0.00 0.00 4.45
3706 4000 6.696441 TTTTCATGTTGTTACGTTTACCCT 57.304 33.333 0.00 0.00 0.00 4.34
3734 4028 3.379688 GCCAGCAAGCTAGCTATCTTTTT 59.620 43.478 19.70 0.00 44.54 1.94
3735 4029 2.948315 GCCAGCAAGCTAGCTATCTTTT 59.052 45.455 19.70 0.00 44.54 2.27
3736 4030 2.092753 TGCCAGCAAGCTAGCTATCTTT 60.093 45.455 19.70 0.00 44.54 2.52
3737 4031 1.487976 TGCCAGCAAGCTAGCTATCTT 59.512 47.619 19.70 3.98 44.54 2.40
3738 4032 1.070445 CTGCCAGCAAGCTAGCTATCT 59.930 52.381 19.70 14.88 44.54 1.98
3739 4033 1.069823 TCTGCCAGCAAGCTAGCTATC 59.930 52.381 19.70 12.70 44.54 2.08
3740 4034 1.070445 CTCTGCCAGCAAGCTAGCTAT 59.930 52.381 19.70 4.27 44.54 2.97
3741 4035 0.463204 CTCTGCCAGCAAGCTAGCTA 59.537 55.000 19.70 0.00 44.54 3.32
3743 4037 0.179051 ATCTCTGCCAGCAAGCTAGC 60.179 55.000 6.62 6.62 0.00 3.42
3744 4038 1.413445 AGATCTCTGCCAGCAAGCTAG 59.587 52.381 0.00 0.00 0.00 3.42
3745 4039 1.411977 GAGATCTCTGCCAGCAAGCTA 59.588 52.381 15.80 0.00 0.00 3.32
3746 4040 0.178533 GAGATCTCTGCCAGCAAGCT 59.821 55.000 15.80 0.00 0.00 3.74
3747 4041 0.178533 AGAGATCTCTGCCAGCAAGC 59.821 55.000 24.56 0.00 38.75 4.01
3748 4042 2.695127 AAGAGATCTCTGCCAGCAAG 57.305 50.000 25.78 0.00 40.36 4.01
3749 4043 2.570752 AGAAAGAGATCTCTGCCAGCAA 59.429 45.455 25.78 0.00 40.36 3.91
3750 4044 2.186243 AGAAAGAGATCTCTGCCAGCA 58.814 47.619 25.78 0.00 40.36 4.41
3751 4045 2.985957 AGAAAGAGATCTCTGCCAGC 57.014 50.000 25.78 12.91 40.36 4.85
3752 4046 5.104982 AGGTAAAGAAAGAGATCTCTGCCAG 60.105 44.000 25.78 0.00 40.36 4.85
3753 4047 4.780021 AGGTAAAGAAAGAGATCTCTGCCA 59.220 41.667 25.78 5.90 40.36 4.92
3754 4048 5.351948 AGGTAAAGAAAGAGATCTCTGCC 57.648 43.478 25.78 18.88 40.36 4.85
3755 4049 8.779354 TTTAAGGTAAAGAAAGAGATCTCTGC 57.221 34.615 25.78 19.54 40.36 4.26
3783 4077 9.120538 GGGTTAAGAGATTGCTTTACATTATGA 57.879 33.333 0.00 0.00 31.09 2.15
3784 4078 8.902806 TGGGTTAAGAGATTGCTTTACATTATG 58.097 33.333 0.00 0.00 31.09 1.90
3785 4079 9.125026 CTGGGTTAAGAGATTGCTTTACATTAT 57.875 33.333 0.00 0.00 31.09 1.28
3786 4080 7.556275 CCTGGGTTAAGAGATTGCTTTACATTA 59.444 37.037 0.00 0.00 31.09 1.90
3787 4081 6.378280 CCTGGGTTAAGAGATTGCTTTACATT 59.622 38.462 0.00 0.00 31.09 2.71
3788 4082 5.888161 CCTGGGTTAAGAGATTGCTTTACAT 59.112 40.000 0.00 0.00 31.09 2.29
3789 4083 5.222048 ACCTGGGTTAAGAGATTGCTTTACA 60.222 40.000 0.00 0.00 31.09 2.41
3790 4084 5.123979 CACCTGGGTTAAGAGATTGCTTTAC 59.876 44.000 0.00 0.00 0.00 2.01
3791 4085 5.253330 CACCTGGGTTAAGAGATTGCTTTA 58.747 41.667 0.00 0.00 0.00 1.85
3792 4086 4.082125 CACCTGGGTTAAGAGATTGCTTT 58.918 43.478 0.00 0.00 0.00 3.51
3793 4087 3.562176 CCACCTGGGTTAAGAGATTGCTT 60.562 47.826 0.00 0.00 0.00 3.91
3794 4088 2.025887 CCACCTGGGTTAAGAGATTGCT 60.026 50.000 0.00 0.00 0.00 3.91
3795 4089 2.026262 TCCACCTGGGTTAAGAGATTGC 60.026 50.000 0.00 0.00 38.11 3.56
3796 4090 4.301072 TTCCACCTGGGTTAAGAGATTG 57.699 45.455 0.00 0.00 38.11 2.67
3797 4091 5.333566 TTTTCCACCTGGGTTAAGAGATT 57.666 39.130 0.00 0.00 38.11 2.40
3798 4092 5.536497 ATTTTCCACCTGGGTTAAGAGAT 57.464 39.130 0.00 0.00 38.11 2.75
3799 4093 5.333566 AATTTTCCACCTGGGTTAAGAGA 57.666 39.130 0.00 0.00 38.11 3.10
3800 4094 6.419484 AAAATTTTCCACCTGGGTTAAGAG 57.581 37.500 0.00 0.00 38.11 2.85
3801 4095 6.014925 GCTAAAATTTTCCACCTGGGTTAAGA 60.015 38.462 6.72 0.00 38.11 2.10
3802 4096 6.014584 AGCTAAAATTTTCCACCTGGGTTAAG 60.015 38.462 6.72 0.00 38.11 1.85
3803 4097 5.841783 AGCTAAAATTTTCCACCTGGGTTAA 59.158 36.000 6.72 0.00 38.11 2.01
3804 4098 5.399113 AGCTAAAATTTTCCACCTGGGTTA 58.601 37.500 6.72 0.00 38.11 2.85
3805 4099 4.231273 AGCTAAAATTTTCCACCTGGGTT 58.769 39.130 6.72 0.00 38.11 4.11
3806 4100 3.856900 AGCTAAAATTTTCCACCTGGGT 58.143 40.909 6.72 0.00 38.11 4.51
3807 4101 4.890158 AAGCTAAAATTTTCCACCTGGG 57.110 40.909 6.72 0.00 35.41 4.45
3808 4102 5.852827 TGAAAGCTAAAATTTTCCACCTGG 58.147 37.500 6.72 0.00 33.43 4.45
3809 4103 6.642540 GTCTGAAAGCTAAAATTTTCCACCTG 59.357 38.462 6.72 0.00 33.43 4.00
3810 4104 6.323739 TGTCTGAAAGCTAAAATTTTCCACCT 59.676 34.615 6.72 0.00 33.43 4.00
3811 4105 6.512297 TGTCTGAAAGCTAAAATTTTCCACC 58.488 36.000 6.72 0.00 33.43 4.61
3812 4106 8.593492 AATGTCTGAAAGCTAAAATTTTCCAC 57.407 30.769 6.72 0.00 33.43 4.02
3813 4107 9.260002 GAAATGTCTGAAAGCTAAAATTTTCCA 57.740 29.630 6.72 0.00 33.43 3.53
3814 4108 8.712363 GGAAATGTCTGAAAGCTAAAATTTTCC 58.288 33.333 6.72 0.08 33.43 3.13
3815 4109 9.260002 TGGAAATGTCTGAAAGCTAAAATTTTC 57.740 29.630 6.72 0.00 34.64 2.29
3816 4110 9.783081 ATGGAAATGTCTGAAAGCTAAAATTTT 57.217 25.926 8.75 8.75 0.00 1.82
3817 4111 9.428097 GATGGAAATGTCTGAAAGCTAAAATTT 57.572 29.630 0.00 0.00 0.00 1.82
3818 4112 8.037166 GGATGGAAATGTCTGAAAGCTAAAATT 58.963 33.333 0.00 0.00 0.00 1.82
3819 4113 7.398332 AGGATGGAAATGTCTGAAAGCTAAAAT 59.602 33.333 0.00 0.00 0.00 1.82
3820 4114 6.721208 AGGATGGAAATGTCTGAAAGCTAAAA 59.279 34.615 0.00 0.00 0.00 1.52
3821 4115 6.248433 AGGATGGAAATGTCTGAAAGCTAAA 58.752 36.000 0.00 0.00 0.00 1.85
3822 4116 5.819991 AGGATGGAAATGTCTGAAAGCTAA 58.180 37.500 0.00 0.00 0.00 3.09
3823 4117 5.441718 AGGATGGAAATGTCTGAAAGCTA 57.558 39.130 0.00 0.00 0.00 3.32
3824 4118 4.313020 AGGATGGAAATGTCTGAAAGCT 57.687 40.909 0.00 0.00 0.00 3.74
3825 4119 4.142293 GGAAGGATGGAAATGTCTGAAAGC 60.142 45.833 0.00 0.00 0.00 3.51
3826 4120 5.012239 TGGAAGGATGGAAATGTCTGAAAG 58.988 41.667 0.00 0.00 0.00 2.62
3827 4121 4.996793 TGGAAGGATGGAAATGTCTGAAA 58.003 39.130 0.00 0.00 0.00 2.69
3828 4122 4.656100 TGGAAGGATGGAAATGTCTGAA 57.344 40.909 0.00 0.00 0.00 3.02
3829 4123 4.656100 TTGGAAGGATGGAAATGTCTGA 57.344 40.909 0.00 0.00 0.00 3.27
3830 4124 4.951715 TCATTGGAAGGATGGAAATGTCTG 59.048 41.667 0.00 0.00 31.63 3.51
3831 4125 5.197224 TCATTGGAAGGATGGAAATGTCT 57.803 39.130 0.00 0.00 31.63 3.41
3832 4126 5.595542 TGATCATTGGAAGGATGGAAATGTC 59.404 40.000 0.00 0.00 28.26 3.06
3833 4127 5.521696 TGATCATTGGAAGGATGGAAATGT 58.478 37.500 0.00 0.00 28.26 2.71
3834 4128 6.127281 TGTTGATCATTGGAAGGATGGAAATG 60.127 38.462 0.00 0.00 28.26 2.32
3835 4129 5.959594 TGTTGATCATTGGAAGGATGGAAAT 59.040 36.000 0.00 0.00 28.26 2.17
3836 4130 5.331906 TGTTGATCATTGGAAGGATGGAAA 58.668 37.500 0.00 0.00 28.26 3.13
3837 4131 4.933134 TGTTGATCATTGGAAGGATGGAA 58.067 39.130 0.00 0.00 28.26 3.53
3838 4132 4.589647 TGTTGATCATTGGAAGGATGGA 57.410 40.909 0.00 0.00 28.26 3.41
3839 4133 6.946583 AGATATGTTGATCATTGGAAGGATGG 59.053 38.462 0.00 0.00 37.91 3.51
3840 4134 7.447545 ACAGATATGTTGATCATTGGAAGGATG 59.552 37.037 0.00 0.00 37.91 3.51
3841 4135 7.524290 ACAGATATGTTGATCATTGGAAGGAT 58.476 34.615 0.00 0.00 37.91 3.24
3842 4136 6.903516 ACAGATATGTTGATCATTGGAAGGA 58.096 36.000 0.00 0.00 37.91 3.36
3843 4137 6.769341 TGACAGATATGTTGATCATTGGAAGG 59.231 38.462 0.00 0.00 37.91 3.46
3844 4138 7.281549 TGTGACAGATATGTTGATCATTGGAAG 59.718 37.037 0.00 0.00 37.91 3.46
3845 4139 7.111466 TGTGACAGATATGTTGATCATTGGAA 58.889 34.615 0.00 0.00 37.91 3.53
3846 4140 6.652053 TGTGACAGATATGTTGATCATTGGA 58.348 36.000 0.00 0.00 37.91 3.53
3847 4141 6.930667 TGTGACAGATATGTTGATCATTGG 57.069 37.500 0.00 0.00 37.91 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.