Multiple sequence alignment - TraesCS6D01G015800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G015800 chr6D 100.000 3728 0 0 1 3728 6424195 6427922 0.000000e+00 6885.0
1 TraesCS6D01G015800 chr6D 86.886 1426 172 12 2314 3728 6371576 6372997 0.000000e+00 1583.0
2 TraesCS6D01G015800 chr6D 86.579 1438 180 8 2302 3728 6497689 6499124 0.000000e+00 1574.0
3 TraesCS6D01G015800 chr6D 86.134 1428 182 11 2314 3728 6353172 6354596 0.000000e+00 1526.0
4 TraesCS6D01G015800 chr6D 86.334 1383 161 17 919 2283 6441733 6443105 0.000000e+00 1482.0
5 TraesCS6D01G015800 chr6D 84.444 1440 144 37 442 1861 6495767 6497146 0.000000e+00 1345.0
6 TraesCS6D01G015800 chr6D 84.643 827 103 14 993 1815 6370256 6371062 0.000000e+00 802.0
7 TraesCS6D01G015800 chr6D 80.670 776 90 29 748 1482 6351348 6352104 7.040000e-152 547.0
8 TraesCS6D01G015800 chr6D 86.052 466 64 1 1396 1861 6352091 6352555 2.000000e-137 499.0
9 TraesCS6D01G015800 chr6D 85.714 399 57 0 1885 2283 6352609 6353007 4.450000e-114 422.0
10 TraesCS6D01G015800 chr6D 87.725 334 41 0 1878 2211 6371078 6371411 1.260000e-104 390.0
11 TraesCS6D01G015800 chr6D 86.239 327 45 0 1885 2211 6497200 6497526 4.580000e-94 355.0
12 TraesCS6D01G015800 chr6D 84.384 333 50 2 2174 2505 6352826 6353157 3.590000e-85 326.0
13 TraesCS6D01G015800 chr6D 81.402 371 63 6 2174 2541 6442924 6443291 7.830000e-77 298.0
14 TraesCS6D01G015800 chr6D 83.453 278 46 0 2262 2539 6371318 6371595 3.690000e-65 259.0
15 TraesCS6D01G015800 chr6D 89.503 181 17 2 2175 2354 6426297 6426476 1.040000e-55 228.0
16 TraesCS6D01G015800 chr6D 89.524 105 4 4 341 445 6484411 6484508 3.910000e-25 126.0
17 TraesCS6D01G015800 chr6D 84.034 119 18 1 2246 2363 6442924 6443042 3.040000e-21 113.0
18 TraesCS6D01G015800 chr6D 85.577 104 15 0 2246 2349 6352826 6352929 3.940000e-20 110.0
19 TraesCS6D01G015800 chr6A 97.315 3054 73 4 681 3728 5939239 5942289 0.000000e+00 5177.0
20 TraesCS6D01G015800 chr6A 86.990 1422 172 8 2318 3728 5917905 5919324 0.000000e+00 1589.0
21 TraesCS6D01G015800 chr6A 86.100 1482 185 18 2262 3728 5901869 5903344 0.000000e+00 1576.0
22 TraesCS6D01G015800 chr6A 82.438 1600 195 34 670 2207 5900383 5901958 0.000000e+00 1319.0
23 TraesCS6D01G015800 chr6A 80.132 1359 255 13 2334 3680 6699821 6701176 0.000000e+00 1000.0
24 TraesCS6D01G015800 chr6A 77.899 1371 235 34 991 2332 6698704 6700035 0.000000e+00 791.0
25 TraesCS6D01G015800 chr6A 88.533 593 58 7 988 1577 5916499 5917084 0.000000e+00 710.0
26 TraesCS6D01G015800 chr6A 80.000 930 140 27 1616 2529 5917082 5917981 0.000000e+00 645.0
27 TraesCS6D01G015800 chr6A 94.340 265 12 2 361 622 5938784 5939048 1.610000e-108 403.0
28 TraesCS6D01G015800 chr6A 85.027 187 23 5 163 348 14391052 14390870 6.360000e-43 185.0
29 TraesCS6D01G015800 chr6B 85.535 1438 186 15 2303 3728 11793670 11795097 0.000000e+00 1483.0
30 TraesCS6D01G015800 chr6B 88.454 970 108 4 2761 3728 11599607 11600574 0.000000e+00 1168.0
31 TraesCS6D01G015800 chr6B 83.159 1051 119 34 710 1723 11592549 11593578 0.000000e+00 907.0
32 TraesCS6D01G015800 chr6B 84.184 803 70 22 654 1417 11791993 11792777 0.000000e+00 726.0
33 TraesCS6D01G015800 chr6B 76.948 1245 243 32 989 2205 12634284 12633056 0.000000e+00 669.0
34 TraesCS6D01G015800 chr6B 87.172 343 44 0 1519 1861 11792792 11793134 1.260000e-104 390.0
35 TraesCS6D01G015800 chr6B 86.667 150 15 2 674 823 11764531 11764675 1.070000e-35 161.0
36 TraesCS6D01G015800 chr6B 80.788 203 32 7 141 340 542283100 542282902 6.450000e-33 152.0
37 TraesCS6D01G015800 chr4A 94.309 123 7 0 207 329 649942674 649942552 4.920000e-44 189.0
38 TraesCS6D01G015800 chr2B 82.143 196 29 6 154 347 18622724 18622915 2.980000e-36 163.0
39 TraesCS6D01G015800 chr2B 83.041 171 23 6 180 346 384821940 384822108 2.320000e-32 150.0
40 TraesCS6D01G015800 chr7B 81.707 164 24 6 183 342 457257247 457257086 8.400000e-27 132.0
41 TraesCS6D01G015800 chr7D 85.000 100 14 1 243 342 481460665 481460763 2.370000e-17 100.0
42 TraesCS6D01G015800 chr3D 77.381 168 33 5 195 359 286123458 286123623 1.100000e-15 95.3
43 TraesCS6D01G015800 chr7A 76.966 178 28 12 177 347 139790802 139790631 5.130000e-14 89.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G015800 chr6D 6424195 6427922 3727 False 3556.500000 6885 94.751500 1 3728 2 chr6D.!!$F4 3727
1 TraesCS6D01G015800 chr6D 6495767 6499124 3357 False 1091.333333 1574 85.754000 442 3728 3 chr6D.!!$F6 3286
2 TraesCS6D01G015800 chr6D 6370256 6372997 2741 False 758.500000 1583 85.676750 993 3728 4 chr6D.!!$F3 2735
3 TraesCS6D01G015800 chr6D 6441733 6443291 1558 False 631.000000 1482 83.923333 919 2541 3 chr6D.!!$F5 1622
4 TraesCS6D01G015800 chr6D 6351348 6354596 3248 False 571.666667 1526 84.755167 748 3728 6 chr6D.!!$F2 2980
5 TraesCS6D01G015800 chr6A 5938784 5942289 3505 False 2790.000000 5177 95.827500 361 3728 2 chr6A.!!$F3 3367
6 TraesCS6D01G015800 chr6A 5900383 5903344 2961 False 1447.500000 1576 84.269000 670 3728 2 chr6A.!!$F1 3058
7 TraesCS6D01G015800 chr6A 5916499 5919324 2825 False 981.333333 1589 85.174333 988 3728 3 chr6A.!!$F2 2740
8 TraesCS6D01G015800 chr6A 6698704 6701176 2472 False 895.500000 1000 79.015500 991 3680 2 chr6A.!!$F4 2689
9 TraesCS6D01G015800 chr6B 11599607 11600574 967 False 1168.000000 1168 88.454000 2761 3728 1 chr6B.!!$F2 967
10 TraesCS6D01G015800 chr6B 11592549 11593578 1029 False 907.000000 907 83.159000 710 1723 1 chr6B.!!$F1 1013
11 TraesCS6D01G015800 chr6B 11791993 11795097 3104 False 866.333333 1483 85.630333 654 3728 3 chr6B.!!$F4 3074
12 TraesCS6D01G015800 chr6B 12633056 12634284 1228 True 669.000000 669 76.948000 989 2205 1 chr6B.!!$R1 1216

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
19 20 0.036199 AGCGAGGAGTACGTGAGAGT 60.036 55.0 0.00 0.0 0.00 3.24 F
35 36 0.099791 GAGTAGAGCGCACAGTCTCC 59.900 60.0 11.47 0.0 0.00 3.71 F
62 63 0.108615 CAAGCGAGGACAGGACGAAT 60.109 55.0 0.00 0.0 0.00 3.34 F
68 69 0.108615 AGGACAGGACGAATCGCAAG 60.109 55.0 1.15 0.0 0.00 4.01 F
70 71 0.108804 GACAGGACGAATCGCAAGGA 60.109 55.0 1.15 0.0 38.47 3.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1876 2248 2.235016 TGTGGCTTTGTTACCCATGTC 58.765 47.619 0.00 0.00 0.00 3.06 R
2691 3318 4.385199 CCAAACTCTAATGGCATAGGACCA 60.385 45.833 0.00 0.00 42.61 4.02 R
2698 3325 3.659183 AGCTCCAAACTCTAATGGCAT 57.341 42.857 0.00 0.00 36.62 4.40 R
2726 3353 9.566432 AATTGGAGGATAATGTCAATTCTACTC 57.434 33.333 0.00 0.00 34.23 2.59 R
2763 3390 9.778741 AACATACAAACAGATATCGGAATATGT 57.221 29.630 10.01 12.64 32.84 2.29 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 2.770134 AGCGAGGAGTACGTGAGAG 58.230 57.895 0.00 0.00 0.00 3.20
19 20 0.036199 AGCGAGGAGTACGTGAGAGT 60.036 55.000 0.00 0.00 0.00 3.24
20 21 1.206610 AGCGAGGAGTACGTGAGAGTA 59.793 52.381 0.00 0.00 0.00 2.59
21 22 1.593933 GCGAGGAGTACGTGAGAGTAG 59.406 57.143 0.00 0.00 0.00 2.57
22 23 2.738000 GCGAGGAGTACGTGAGAGTAGA 60.738 54.545 0.00 0.00 0.00 2.59
23 24 3.117794 CGAGGAGTACGTGAGAGTAGAG 58.882 54.545 0.00 0.00 0.00 2.43
24 25 2.867975 GAGGAGTACGTGAGAGTAGAGC 59.132 54.545 0.00 0.00 0.00 4.09
25 26 1.593933 GGAGTACGTGAGAGTAGAGCG 59.406 57.143 0.00 0.00 0.00 5.03
26 27 1.004715 GAGTACGTGAGAGTAGAGCGC 60.005 57.143 0.00 0.00 0.00 5.92
27 28 0.725686 GTACGTGAGAGTAGAGCGCA 59.274 55.000 11.47 0.00 0.00 6.09
28 29 0.725686 TACGTGAGAGTAGAGCGCAC 59.274 55.000 11.47 2.25 0.00 5.34
29 30 1.235281 ACGTGAGAGTAGAGCGCACA 61.235 55.000 11.47 0.00 0.00 4.57
30 31 0.522286 CGTGAGAGTAGAGCGCACAG 60.522 60.000 11.47 0.00 0.00 3.66
31 32 0.523966 GTGAGAGTAGAGCGCACAGT 59.476 55.000 11.47 0.00 0.00 3.55
32 33 0.805614 TGAGAGTAGAGCGCACAGTC 59.194 55.000 11.47 6.40 0.00 3.51
33 34 1.091537 GAGAGTAGAGCGCACAGTCT 58.908 55.000 11.47 11.56 0.00 3.24
34 35 1.063469 GAGAGTAGAGCGCACAGTCTC 59.937 57.143 11.47 16.40 0.00 3.36
35 36 0.099791 GAGTAGAGCGCACAGTCTCC 59.900 60.000 11.47 0.00 0.00 3.71
36 37 1.226435 GTAGAGCGCACAGTCTCCG 60.226 63.158 11.47 0.00 0.00 4.63
37 38 2.407428 TAGAGCGCACAGTCTCCGG 61.407 63.158 11.47 0.00 0.00 5.14
41 42 4.457496 CGCACAGTCTCCGGCCAT 62.457 66.667 2.24 0.00 0.00 4.40
42 43 2.821366 GCACAGTCTCCGGCCATG 60.821 66.667 2.24 0.00 0.00 3.66
43 44 2.821366 CACAGTCTCCGGCCATGC 60.821 66.667 2.24 0.00 0.00 4.06
44 45 3.321648 ACAGTCTCCGGCCATGCA 61.322 61.111 2.24 0.00 0.00 3.96
45 46 2.046023 CAGTCTCCGGCCATGCAA 60.046 61.111 2.24 0.00 0.00 4.08
46 47 2.110967 CAGTCTCCGGCCATGCAAG 61.111 63.158 2.24 0.00 0.00 4.01
47 48 3.512516 GTCTCCGGCCATGCAAGC 61.513 66.667 2.24 3.55 0.00 4.01
53 54 3.512516 GGCCATGCAAGCGAGGAC 61.513 66.667 0.00 0.03 0.00 3.85
54 55 2.747460 GCCATGCAAGCGAGGACA 60.747 61.111 6.75 0.00 0.00 4.02
55 56 2.758089 GCCATGCAAGCGAGGACAG 61.758 63.158 6.75 0.00 0.00 3.51
56 57 2.110967 CCATGCAAGCGAGGACAGG 61.111 63.158 0.00 0.00 0.00 4.00
57 58 1.078918 CATGCAAGCGAGGACAGGA 60.079 57.895 0.00 0.00 0.00 3.86
58 59 1.078848 ATGCAAGCGAGGACAGGAC 60.079 57.895 0.00 0.00 0.00 3.85
59 60 2.811317 GCAAGCGAGGACAGGACG 60.811 66.667 0.00 0.00 0.00 4.79
60 61 2.962569 CAAGCGAGGACAGGACGA 59.037 61.111 0.00 0.00 0.00 4.20
61 62 1.289066 CAAGCGAGGACAGGACGAA 59.711 57.895 0.00 0.00 0.00 3.85
62 63 0.108615 CAAGCGAGGACAGGACGAAT 60.109 55.000 0.00 0.00 0.00 3.34
63 64 0.173708 AAGCGAGGACAGGACGAATC 59.826 55.000 0.00 0.00 0.00 2.52
64 65 1.586564 GCGAGGACAGGACGAATCG 60.587 63.158 0.00 0.00 0.00 3.34
65 66 1.586564 CGAGGACAGGACGAATCGC 60.587 63.158 1.15 0.00 0.00 4.58
66 67 1.511305 GAGGACAGGACGAATCGCA 59.489 57.895 1.15 0.00 0.00 5.10
67 68 0.108804 GAGGACAGGACGAATCGCAA 60.109 55.000 1.15 0.00 0.00 4.85
68 69 0.108615 AGGACAGGACGAATCGCAAG 60.109 55.000 1.15 0.00 0.00 4.01
69 70 1.084370 GGACAGGACGAATCGCAAGG 61.084 60.000 1.15 0.00 38.47 3.61
70 71 0.108804 GACAGGACGAATCGCAAGGA 60.109 55.000 1.15 0.00 38.47 3.36
71 72 0.320374 ACAGGACGAATCGCAAGGAA 59.680 50.000 1.15 0.00 38.47 3.36
72 73 1.002366 CAGGACGAATCGCAAGGAAG 58.998 55.000 1.15 0.00 38.47 3.46
73 74 0.608640 AGGACGAATCGCAAGGAAGT 59.391 50.000 1.15 0.00 38.47 3.01
74 75 1.002087 AGGACGAATCGCAAGGAAGTT 59.998 47.619 1.15 0.00 38.47 2.66
75 76 2.232941 AGGACGAATCGCAAGGAAGTTA 59.767 45.455 1.15 0.00 38.47 2.24
76 77 2.347755 GGACGAATCGCAAGGAAGTTAC 59.652 50.000 1.15 0.00 38.47 2.50
77 78 2.344025 ACGAATCGCAAGGAAGTTACC 58.656 47.619 1.15 0.00 38.47 2.85
78 79 2.289195 ACGAATCGCAAGGAAGTTACCA 60.289 45.455 1.15 0.00 38.47 3.25
79 80 2.739913 CGAATCGCAAGGAAGTTACCAA 59.260 45.455 0.00 0.00 38.47 3.67
80 81 3.181520 CGAATCGCAAGGAAGTTACCAAG 60.182 47.826 0.00 0.00 38.47 3.61
81 82 3.695830 ATCGCAAGGAAGTTACCAAGA 57.304 42.857 0.00 0.00 38.47 3.02
82 83 3.478857 TCGCAAGGAAGTTACCAAGAA 57.521 42.857 0.00 0.00 38.47 2.52
83 84 3.399330 TCGCAAGGAAGTTACCAAGAAG 58.601 45.455 0.00 0.00 38.47 2.85
84 85 2.484264 CGCAAGGAAGTTACCAAGAAGG 59.516 50.000 0.00 0.00 45.67 3.46
85 86 3.751518 GCAAGGAAGTTACCAAGAAGGA 58.248 45.455 0.00 0.00 41.22 3.36
86 87 4.336280 GCAAGGAAGTTACCAAGAAGGAT 58.664 43.478 0.00 0.00 41.22 3.24
87 88 4.156739 GCAAGGAAGTTACCAAGAAGGATG 59.843 45.833 0.00 0.00 41.22 3.51
88 89 3.956744 AGGAAGTTACCAAGAAGGATGC 58.043 45.455 0.00 0.00 41.22 3.91
89 90 3.330701 AGGAAGTTACCAAGAAGGATGCA 59.669 43.478 0.00 0.00 41.22 3.96
90 91 4.018050 AGGAAGTTACCAAGAAGGATGCAT 60.018 41.667 0.00 0.00 41.22 3.96
91 92 4.096984 GGAAGTTACCAAGAAGGATGCATG 59.903 45.833 2.46 0.00 41.22 4.06
92 93 4.574674 AGTTACCAAGAAGGATGCATGA 57.425 40.909 2.46 0.00 41.22 3.07
93 94 4.922206 AGTTACCAAGAAGGATGCATGAA 58.078 39.130 2.46 0.00 41.22 2.57
94 95 4.946157 AGTTACCAAGAAGGATGCATGAAG 59.054 41.667 2.46 0.00 41.22 3.02
95 96 2.731572 ACCAAGAAGGATGCATGAAGG 58.268 47.619 2.46 0.00 41.22 3.46
96 97 1.407979 CCAAGAAGGATGCATGAAGGC 59.592 52.381 2.46 0.00 41.22 4.35
97 98 1.407979 CAAGAAGGATGCATGAAGGCC 59.592 52.381 2.46 0.00 0.00 5.19
98 99 0.465097 AGAAGGATGCATGAAGGCCG 60.465 55.000 2.46 0.00 0.00 6.13
99 100 2.068277 GAAGGATGCATGAAGGCCGC 62.068 60.000 2.46 0.00 0.00 6.53
100 101 3.957535 GGATGCATGAAGGCCGCG 61.958 66.667 2.46 0.00 0.00 6.46
101 102 3.957535 GATGCATGAAGGCCGCGG 61.958 66.667 24.05 24.05 0.00 6.46
113 114 3.257561 CCGCGGCGTGAGAGATTG 61.258 66.667 23.75 0.00 0.00 2.67
114 115 3.918220 CGCGGCGTGAGAGATTGC 61.918 66.667 16.70 0.00 0.00 3.56
115 116 2.815211 GCGGCGTGAGAGATTGCA 60.815 61.111 9.37 0.00 0.00 4.08
116 117 2.176273 GCGGCGTGAGAGATTGCAT 61.176 57.895 9.37 0.00 0.00 3.96
117 118 0.875908 GCGGCGTGAGAGATTGCATA 60.876 55.000 9.37 0.00 0.00 3.14
118 119 1.788258 CGGCGTGAGAGATTGCATAT 58.212 50.000 0.00 0.00 0.00 1.78
119 120 2.138320 CGGCGTGAGAGATTGCATATT 58.862 47.619 0.00 0.00 0.00 1.28
120 121 2.545526 CGGCGTGAGAGATTGCATATTT 59.454 45.455 0.00 0.00 0.00 1.40
121 122 3.740832 CGGCGTGAGAGATTGCATATTTA 59.259 43.478 0.00 0.00 0.00 1.40
122 123 4.389992 CGGCGTGAGAGATTGCATATTTAT 59.610 41.667 0.00 0.00 0.00 1.40
123 124 5.576774 CGGCGTGAGAGATTGCATATTTATA 59.423 40.000 0.00 0.00 0.00 0.98
124 125 6.237675 CGGCGTGAGAGATTGCATATTTATAG 60.238 42.308 0.00 0.00 0.00 1.31
125 126 6.036517 GGCGTGAGAGATTGCATATTTATAGG 59.963 42.308 0.00 0.00 0.00 2.57
126 127 6.036517 GCGTGAGAGATTGCATATTTATAGGG 59.963 42.308 0.00 0.00 0.00 3.53
127 128 6.536582 CGTGAGAGATTGCATATTTATAGGGG 59.463 42.308 0.00 0.00 0.00 4.79
128 129 6.825721 GTGAGAGATTGCATATTTATAGGGGG 59.174 42.308 0.00 0.00 0.00 5.40
129 130 6.505344 TGAGAGATTGCATATTTATAGGGGGT 59.495 38.462 0.00 0.00 0.00 4.95
130 131 6.725364 AGAGATTGCATATTTATAGGGGGTG 58.275 40.000 0.00 0.00 0.00 4.61
131 132 6.505344 AGAGATTGCATATTTATAGGGGGTGA 59.495 38.462 0.00 0.00 0.00 4.02
132 133 7.018550 AGAGATTGCATATTTATAGGGGGTGAA 59.981 37.037 0.00 0.00 0.00 3.18
133 134 7.177878 AGATTGCATATTTATAGGGGGTGAAG 58.822 38.462 0.00 0.00 0.00 3.02
134 135 4.662278 TGCATATTTATAGGGGGTGAAGC 58.338 43.478 0.00 0.00 0.00 3.86
135 136 3.689649 GCATATTTATAGGGGGTGAAGCG 59.310 47.826 0.00 0.00 0.00 4.68
136 137 4.806286 GCATATTTATAGGGGGTGAAGCGT 60.806 45.833 0.00 0.00 0.00 5.07
137 138 2.702592 TTTATAGGGGGTGAAGCGTG 57.297 50.000 0.00 0.00 0.00 5.34
138 139 0.179468 TTATAGGGGGTGAAGCGTGC 59.821 55.000 0.00 0.00 0.00 5.34
139 140 0.689745 TATAGGGGGTGAAGCGTGCT 60.690 55.000 0.00 0.00 0.00 4.40
140 141 0.689745 ATAGGGGGTGAAGCGTGCTA 60.690 55.000 0.00 0.00 0.00 3.49
141 142 0.689745 TAGGGGGTGAAGCGTGCTAT 60.690 55.000 0.00 0.00 0.00 2.97
142 143 1.819632 GGGGGTGAAGCGTGCTATG 60.820 63.158 0.00 0.00 0.00 2.23
143 144 1.819632 GGGGTGAAGCGTGCTATGG 60.820 63.158 0.00 0.00 0.00 2.74
144 145 1.078426 GGGTGAAGCGTGCTATGGT 60.078 57.895 0.00 0.00 0.00 3.55
145 146 0.676782 GGGTGAAGCGTGCTATGGTT 60.677 55.000 0.00 0.00 0.00 3.67
146 147 1.165270 GGTGAAGCGTGCTATGGTTT 58.835 50.000 0.00 0.00 0.00 3.27
147 148 1.539827 GGTGAAGCGTGCTATGGTTTT 59.460 47.619 0.00 0.00 0.00 2.43
148 149 2.584791 GTGAAGCGTGCTATGGTTTTG 58.415 47.619 0.00 0.00 0.00 2.44
149 150 2.031157 GTGAAGCGTGCTATGGTTTTGT 60.031 45.455 0.00 0.00 0.00 2.83
150 151 2.225491 TGAAGCGTGCTATGGTTTTGTC 59.775 45.455 0.00 0.00 0.00 3.18
151 152 2.185004 AGCGTGCTATGGTTTTGTCT 57.815 45.000 0.00 0.00 0.00 3.41
152 153 3.328382 AGCGTGCTATGGTTTTGTCTA 57.672 42.857 0.00 0.00 0.00 2.59
153 154 3.000727 AGCGTGCTATGGTTTTGTCTAC 58.999 45.455 0.00 0.00 0.00 2.59
154 155 2.739913 GCGTGCTATGGTTTTGTCTACA 59.260 45.455 0.00 0.00 0.00 2.74
155 156 3.374058 GCGTGCTATGGTTTTGTCTACAT 59.626 43.478 0.00 0.00 0.00 2.29
156 157 4.494199 GCGTGCTATGGTTTTGTCTACATC 60.494 45.833 0.00 0.00 0.00 3.06
157 158 4.259810 CGTGCTATGGTTTTGTCTACATCG 60.260 45.833 0.00 0.00 0.00 3.84
158 159 4.630069 GTGCTATGGTTTTGTCTACATCGT 59.370 41.667 0.00 0.00 0.00 3.73
159 160 4.629634 TGCTATGGTTTTGTCTACATCGTG 59.370 41.667 0.00 0.00 0.00 4.35
160 161 4.630069 GCTATGGTTTTGTCTACATCGTGT 59.370 41.667 0.00 0.00 0.00 4.49
161 162 5.808540 GCTATGGTTTTGTCTACATCGTGTA 59.191 40.000 0.00 0.00 0.00 2.90
162 163 6.479001 GCTATGGTTTTGTCTACATCGTGTAT 59.521 38.462 0.00 0.00 31.66 2.29
163 164 7.650504 GCTATGGTTTTGTCTACATCGTGTATA 59.349 37.037 0.00 0.00 31.66 1.47
164 165 9.181805 CTATGGTTTTGTCTACATCGTGTATAG 57.818 37.037 0.00 0.00 31.66 1.31
165 166 6.334989 TGGTTTTGTCTACATCGTGTATAGG 58.665 40.000 0.00 0.00 31.66 2.57
166 167 6.071221 TGGTTTTGTCTACATCGTGTATAGGT 60.071 38.462 0.00 0.00 31.66 3.08
167 168 6.815142 GGTTTTGTCTACATCGTGTATAGGTT 59.185 38.462 0.00 0.00 31.66 3.50
168 169 7.332678 GGTTTTGTCTACATCGTGTATAGGTTT 59.667 37.037 0.00 0.00 31.66 3.27
169 170 8.378421 GTTTTGTCTACATCGTGTATAGGTTTC 58.622 37.037 0.00 0.00 31.66 2.78
170 171 7.400599 TTGTCTACATCGTGTATAGGTTTCT 57.599 36.000 0.00 0.00 31.66 2.52
171 172 7.400599 TGTCTACATCGTGTATAGGTTTCTT 57.599 36.000 0.00 0.00 31.66 2.52
172 173 7.833786 TGTCTACATCGTGTATAGGTTTCTTT 58.166 34.615 0.00 0.00 31.66 2.52
173 174 8.959548 TGTCTACATCGTGTATAGGTTTCTTTA 58.040 33.333 0.00 0.00 31.66 1.85
174 175 9.962783 GTCTACATCGTGTATAGGTTTCTTTAT 57.037 33.333 0.00 0.00 31.66 1.40
190 191 9.856162 GGTTTCTTTATATAAGTTATGGGTCCA 57.144 33.333 5.61 0.00 0.00 4.02
192 193 9.856162 TTTCTTTATATAAGTTATGGGTCCACC 57.144 33.333 5.61 0.00 40.81 4.61
193 194 8.808240 TCTTTATATAAGTTATGGGTCCACCT 57.192 34.615 5.61 0.00 41.11 4.00
194 195 9.232882 TCTTTATATAAGTTATGGGTCCACCTT 57.767 33.333 5.61 0.00 41.11 3.50
195 196 9.284968 CTTTATATAAGTTATGGGTCCACCTTG 57.715 37.037 5.61 0.00 41.11 3.61
196 197 2.899303 AAGTTATGGGTCCACCTTGG 57.101 50.000 0.00 0.00 41.11 3.61
197 198 1.755200 AGTTATGGGTCCACCTTGGT 58.245 50.000 0.00 0.00 39.03 3.67
198 199 2.070573 AGTTATGGGTCCACCTTGGTT 58.929 47.619 0.00 0.00 39.03 3.67
199 200 2.449345 AGTTATGGGTCCACCTTGGTTT 59.551 45.455 0.00 0.00 39.03 3.27
200 201 3.658705 AGTTATGGGTCCACCTTGGTTTA 59.341 43.478 0.00 0.00 39.03 2.01
201 202 4.293901 AGTTATGGGTCCACCTTGGTTTAT 59.706 41.667 0.00 0.00 39.03 1.40
202 203 2.595750 TGGGTCCACCTTGGTTTATG 57.404 50.000 0.00 0.00 39.03 1.90
203 204 2.066592 TGGGTCCACCTTGGTTTATGA 58.933 47.619 0.00 0.00 39.03 2.15
204 205 2.447429 TGGGTCCACCTTGGTTTATGAA 59.553 45.455 0.00 0.00 39.03 2.57
205 206 3.076785 TGGGTCCACCTTGGTTTATGAAT 59.923 43.478 0.00 0.00 39.03 2.57
206 207 4.292571 TGGGTCCACCTTGGTTTATGAATA 59.707 41.667 0.00 0.00 39.03 1.75
207 208 5.043732 TGGGTCCACCTTGGTTTATGAATAT 60.044 40.000 0.00 0.00 39.03 1.28
208 209 5.535030 GGGTCCACCTTGGTTTATGAATATC 59.465 44.000 0.00 0.00 39.03 1.63
209 210 6.365520 GGTCCACCTTGGTTTATGAATATCT 58.634 40.000 0.00 0.00 39.03 1.98
210 211 6.263168 GGTCCACCTTGGTTTATGAATATCTG 59.737 42.308 0.00 0.00 39.03 2.90
211 212 7.054124 GTCCACCTTGGTTTATGAATATCTGA 58.946 38.462 0.00 0.00 39.03 3.27
212 213 7.012421 GTCCACCTTGGTTTATGAATATCTGAC 59.988 40.741 0.00 0.00 39.03 3.51
213 214 6.017934 CCACCTTGGTTTATGAATATCTGACG 60.018 42.308 0.00 0.00 31.35 4.35
214 215 6.017934 CACCTTGGTTTATGAATATCTGACGG 60.018 42.308 0.00 0.00 0.00 4.79
215 216 6.055588 CCTTGGTTTATGAATATCTGACGGT 58.944 40.000 0.00 0.00 0.00 4.83
216 217 6.542370 CCTTGGTTTATGAATATCTGACGGTT 59.458 38.462 0.00 0.00 0.00 4.44
217 218 7.713507 CCTTGGTTTATGAATATCTGACGGTTA 59.286 37.037 0.00 0.00 0.00 2.85
218 219 9.273016 CTTGGTTTATGAATATCTGACGGTTAT 57.727 33.333 0.00 0.00 0.00 1.89
220 221 9.701098 TGGTTTATGAATATCTGACGGTTATAC 57.299 33.333 0.00 0.00 0.00 1.47
221 222 9.924650 GGTTTATGAATATCTGACGGTTATACT 57.075 33.333 0.00 0.00 0.00 2.12
224 225 9.836076 TTATGAATATCTGACGGTTATACTTCG 57.164 33.333 0.00 0.00 0.00 3.79
225 226 7.268199 TGAATATCTGACGGTTATACTTCGT 57.732 36.000 0.00 0.00 39.99 3.85
226 227 7.709947 TGAATATCTGACGGTTATACTTCGTT 58.290 34.615 0.00 0.00 37.25 3.85
227 228 7.646526 TGAATATCTGACGGTTATACTTCGTTG 59.353 37.037 0.00 0.00 37.25 4.10
228 229 5.571784 ATCTGACGGTTATACTTCGTTGA 57.428 39.130 0.00 0.00 37.25 3.18
229 230 5.571784 TCTGACGGTTATACTTCGTTGAT 57.428 39.130 0.00 0.00 37.25 2.57
230 231 5.957798 TCTGACGGTTATACTTCGTTGATT 58.042 37.500 0.00 0.00 37.25 2.57
231 232 5.803461 TCTGACGGTTATACTTCGTTGATTG 59.197 40.000 0.00 0.00 37.25 2.67
232 233 4.865925 TGACGGTTATACTTCGTTGATTGG 59.134 41.667 0.00 0.00 37.25 3.16
233 234 4.186159 ACGGTTATACTTCGTTGATTGGG 58.814 43.478 0.00 0.00 32.95 4.12
234 235 4.081531 ACGGTTATACTTCGTTGATTGGGA 60.082 41.667 0.00 0.00 32.95 4.37
235 236 4.871557 CGGTTATACTTCGTTGATTGGGAA 59.128 41.667 0.00 0.00 0.00 3.97
236 237 5.352016 CGGTTATACTTCGTTGATTGGGAAA 59.648 40.000 0.00 0.00 0.00 3.13
237 238 6.128227 CGGTTATACTTCGTTGATTGGGAAAA 60.128 38.462 0.00 0.00 0.00 2.29
238 239 7.248437 GGTTATACTTCGTTGATTGGGAAAAG 58.752 38.462 0.00 0.00 0.00 2.27
239 240 5.897377 ATACTTCGTTGATTGGGAAAAGG 57.103 39.130 0.00 0.00 0.00 3.11
240 241 2.296190 ACTTCGTTGATTGGGAAAAGGC 59.704 45.455 0.00 0.00 0.00 4.35
241 242 1.988293 TCGTTGATTGGGAAAAGGCA 58.012 45.000 0.00 0.00 0.00 4.75
242 243 1.611491 TCGTTGATTGGGAAAAGGCAC 59.389 47.619 0.00 0.00 0.00 5.01
243 244 1.339610 CGTTGATTGGGAAAAGGCACA 59.660 47.619 0.00 0.00 0.00 4.57
244 245 2.754472 GTTGATTGGGAAAAGGCACAC 58.246 47.619 0.00 0.00 0.00 3.82
245 246 1.337118 TGATTGGGAAAAGGCACACC 58.663 50.000 0.00 0.00 0.00 4.16
246 247 1.337118 GATTGGGAAAAGGCACACCA 58.663 50.000 0.00 0.00 39.06 4.17
247 248 1.691434 GATTGGGAAAAGGCACACCAA 59.309 47.619 0.00 0.00 44.42 3.67
248 249 1.573108 TTGGGAAAAGGCACACCAAA 58.427 45.000 0.00 0.00 38.18 3.28
249 250 1.799933 TGGGAAAAGGCACACCAAAT 58.200 45.000 0.00 0.00 39.06 2.32
250 251 2.122768 TGGGAAAAGGCACACCAAATT 58.877 42.857 0.00 0.00 39.06 1.82
251 252 3.309296 TGGGAAAAGGCACACCAAATTA 58.691 40.909 0.00 0.00 39.06 1.40
252 253 3.711704 TGGGAAAAGGCACACCAAATTAA 59.288 39.130 0.00 0.00 39.06 1.40
253 254 4.349342 TGGGAAAAGGCACACCAAATTAAT 59.651 37.500 0.00 0.00 39.06 1.40
254 255 4.694982 GGGAAAAGGCACACCAAATTAATG 59.305 41.667 0.00 0.00 39.06 1.90
255 256 4.694982 GGAAAAGGCACACCAAATTAATGG 59.305 41.667 0.00 0.00 46.38 3.16
279 280 9.184523 TGGTTAGATGTTTCTAATTATTGTGGG 57.815 33.333 0.00 0.00 44.24 4.61
280 281 9.403583 GGTTAGATGTTTCTAATTATTGTGGGA 57.596 33.333 0.00 0.00 44.24 4.37
323 324 6.877611 TTTTCTGGTGAGTTTATCAAGGAC 57.122 37.500 0.00 0.00 40.43 3.85
324 325 5.825593 TTCTGGTGAGTTTATCAAGGACT 57.174 39.130 0.00 0.00 40.43 3.85
325 326 5.825593 TCTGGTGAGTTTATCAAGGACTT 57.174 39.130 0.00 0.00 40.43 3.01
326 327 6.187727 TCTGGTGAGTTTATCAAGGACTTT 57.812 37.500 0.00 0.00 40.43 2.66
327 328 6.601332 TCTGGTGAGTTTATCAAGGACTTTT 58.399 36.000 0.00 0.00 40.43 2.27
328 329 7.060421 TCTGGTGAGTTTATCAAGGACTTTTT 58.940 34.615 0.00 0.00 40.43 1.94
366 367 9.802039 ATATATATGTTACCTAGAGGCTAGAGC 57.198 37.037 0.00 0.00 39.32 4.09
367 368 3.664551 TGTTACCTAGAGGCTAGAGCA 57.335 47.619 3.54 0.00 44.36 4.26
368 369 3.556999 TGTTACCTAGAGGCTAGAGCAG 58.443 50.000 3.54 0.00 44.36 4.24
369 370 3.053544 TGTTACCTAGAGGCTAGAGCAGT 60.054 47.826 3.54 0.00 44.36 4.40
372 373 4.463050 ACCTAGAGGCTAGAGCAGTAAT 57.537 45.455 3.54 0.00 44.36 1.89
387 388 6.820656 AGAGCAGTAATTGGATAGTCTGTTTG 59.179 38.462 0.00 0.00 0.00 2.93
389 390 7.620880 AGCAGTAATTGGATAGTCTGTTTGTA 58.379 34.615 0.00 0.00 0.00 2.41
391 392 7.549488 GCAGTAATTGGATAGTCTGTTTGTACT 59.451 37.037 0.00 0.00 0.00 2.73
484 488 4.137872 TACGTAGCAGCCACGGCC 62.138 66.667 17.84 0.00 43.59 6.13
599 604 2.743718 CACGGCCTGTCAGTTCCT 59.256 61.111 0.00 0.00 0.00 3.36
616 621 4.844655 AGTTCCTGAGTTATAACCACTGGT 59.155 41.667 22.74 0.00 37.65 4.00
617 622 6.021030 AGTTCCTGAGTTATAACCACTGGTA 58.979 40.000 22.74 16.48 33.12 3.25
618 623 6.672657 AGTTCCTGAGTTATAACCACTGGTAT 59.327 38.462 22.74 14.02 33.12 2.73
619 624 7.842743 AGTTCCTGAGTTATAACCACTGGTATA 59.157 37.037 22.74 13.86 33.12 1.47
685 860 9.786105 CATGTACTACATCTAATCTGCTATGAG 57.214 37.037 0.00 0.00 36.53 2.90
707 882 1.699634 AGACACCACAGGCTACATTGT 59.300 47.619 0.00 0.00 0.00 2.71
708 883 2.106511 AGACACCACAGGCTACATTGTT 59.893 45.455 0.00 0.00 0.00 2.83
825 1013 2.290641 ACCGGCAAATATGACTGGTGAA 60.291 45.455 0.00 0.00 39.40 3.18
834 1022 6.560003 AATATGACTGGTGAATGGTGACTA 57.440 37.500 0.00 0.00 0.00 2.59
883 1080 0.536724 CCTCATCCATCCACACGTCA 59.463 55.000 0.00 0.00 0.00 4.35
886 1083 1.086696 CATCCATCCACACGTCAACC 58.913 55.000 0.00 0.00 0.00 3.77
896 1093 2.743928 CGTCAACCCAGCTCTGCC 60.744 66.667 0.00 0.00 0.00 4.85
901 1098 1.538876 AACCCAGCTCTGCCCTACA 60.539 57.895 0.00 0.00 0.00 2.74
904 1101 0.257039 CCCAGCTCTGCCCTACATTT 59.743 55.000 0.00 0.00 0.00 2.32
1761 2133 2.106131 CATCCAATCGCGTCCGGA 59.894 61.111 5.77 10.86 34.56 5.14
1876 2248 4.142093 CCCTCCAATGGTTAGATTTGCAAG 60.142 45.833 0.00 0.00 0.00 4.01
2542 3169 8.035984 ACCTTTCTCTTTCTAATAACCTTCTCG 58.964 37.037 0.00 0.00 0.00 4.04
2543 3170 8.035984 CCTTTCTCTTTCTAATAACCTTCTCGT 58.964 37.037 0.00 0.00 0.00 4.18
2691 3318 9.381033 CTTGATCTATCACACAATTCTTTCTCT 57.619 33.333 0.00 0.00 36.36 3.10
2698 3325 5.306937 TCACACAATTCTTTCTCTGGTCCTA 59.693 40.000 0.00 0.00 0.00 2.94
2726 3353 7.253422 CCATTAGAGTTTGGAGCTTACAAATG 58.747 38.462 17.09 11.47 39.68 2.32
2763 3390 6.884472 TTATCCTCCAATTACTTCAGTGGA 57.116 37.500 0.00 0.00 37.83 4.02
2844 3471 3.154710 CCTTTTAGTGGGTGAACTTCCC 58.845 50.000 0.00 0.00 44.81 3.97
2978 3605 8.373981 TCTTTCAGCAAATAATTTCCATGGAAA 58.626 29.630 35.78 35.78 46.37 3.13
2982 3609 9.517868 TCAGCAAATAATTTCCATGGAAAATTT 57.482 25.926 36.88 32.14 45.60 1.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 1.593933 CTACTCTCACGTACTCCTCGC 59.406 57.143 0.00 0.00 0.00 5.03
3 4 2.867975 GCTCTACTCTCACGTACTCCTC 59.132 54.545 0.00 0.00 0.00 3.71
6 7 1.004715 GCGCTCTACTCTCACGTACTC 60.005 57.143 0.00 0.00 0.00 2.59
9 10 0.725686 GTGCGCTCTACTCTCACGTA 59.274 55.000 9.73 0.00 0.00 3.57
10 11 1.235281 TGTGCGCTCTACTCTCACGT 61.235 55.000 9.73 0.00 0.00 4.49
11 12 0.522286 CTGTGCGCTCTACTCTCACG 60.522 60.000 9.73 0.00 0.00 4.35
12 13 0.523966 ACTGTGCGCTCTACTCTCAC 59.476 55.000 9.73 0.00 0.00 3.51
13 14 0.805614 GACTGTGCGCTCTACTCTCA 59.194 55.000 9.73 0.00 0.00 3.27
14 15 1.063469 GAGACTGTGCGCTCTACTCTC 59.937 57.143 9.73 11.63 0.00 3.20
15 16 1.091537 GAGACTGTGCGCTCTACTCT 58.908 55.000 9.73 6.40 0.00 3.24
16 17 0.099791 GGAGACTGTGCGCTCTACTC 59.900 60.000 9.73 14.25 0.00 2.59
17 18 1.649390 CGGAGACTGTGCGCTCTACT 61.649 60.000 9.73 6.16 31.12 2.57
18 19 1.226435 CGGAGACTGTGCGCTCTAC 60.226 63.158 9.73 2.18 31.12 2.59
19 20 2.407428 CCGGAGACTGTGCGCTCTA 61.407 63.158 9.73 0.00 39.00 2.43
20 21 3.753434 CCGGAGACTGTGCGCTCT 61.753 66.667 9.73 1.90 39.00 4.09
24 25 4.457496 ATGGCCGGAGACTGTGCG 62.457 66.667 5.05 0.00 40.28 5.34
25 26 2.821366 CATGGCCGGAGACTGTGC 60.821 66.667 5.05 0.00 0.00 4.57
26 27 2.821366 GCATGGCCGGAGACTGTG 60.821 66.667 5.05 0.00 0.00 3.66
27 28 2.809861 CTTGCATGGCCGGAGACTGT 62.810 60.000 5.05 0.00 0.00 3.55
28 29 2.046023 TTGCATGGCCGGAGACTG 60.046 61.111 5.05 0.00 0.00 3.51
29 30 2.270205 CTTGCATGGCCGGAGACT 59.730 61.111 5.05 0.00 0.00 3.24
30 31 3.512516 GCTTGCATGGCCGGAGAC 61.513 66.667 5.05 0.00 0.00 3.36
36 37 3.512516 GTCCTCGCTTGCATGGCC 61.513 66.667 0.00 0.00 0.00 5.36
37 38 2.747460 TGTCCTCGCTTGCATGGC 60.747 61.111 1.34 2.00 0.00 4.40
38 39 2.110967 CCTGTCCTCGCTTGCATGG 61.111 63.158 1.34 0.00 0.00 3.66
39 40 1.078918 TCCTGTCCTCGCTTGCATG 60.079 57.895 0.00 0.00 0.00 4.06
40 41 1.078848 GTCCTGTCCTCGCTTGCAT 60.079 57.895 0.00 0.00 0.00 3.96
41 42 2.343758 GTCCTGTCCTCGCTTGCA 59.656 61.111 0.00 0.00 0.00 4.08
42 43 2.765250 TTCGTCCTGTCCTCGCTTGC 62.765 60.000 0.00 0.00 0.00 4.01
43 44 0.108615 ATTCGTCCTGTCCTCGCTTG 60.109 55.000 0.00 0.00 0.00 4.01
44 45 0.173708 GATTCGTCCTGTCCTCGCTT 59.826 55.000 0.00 0.00 0.00 4.68
45 46 1.810532 GATTCGTCCTGTCCTCGCT 59.189 57.895 0.00 0.00 0.00 4.93
46 47 1.586564 CGATTCGTCCTGTCCTCGC 60.587 63.158 0.00 0.00 0.00 5.03
47 48 1.586564 GCGATTCGTCCTGTCCTCG 60.587 63.158 8.03 0.00 0.00 4.63
48 49 0.108804 TTGCGATTCGTCCTGTCCTC 60.109 55.000 8.03 0.00 0.00 3.71
49 50 0.108615 CTTGCGATTCGTCCTGTCCT 60.109 55.000 8.03 0.00 0.00 3.85
50 51 1.084370 CCTTGCGATTCGTCCTGTCC 61.084 60.000 8.03 0.00 0.00 4.02
51 52 0.108804 TCCTTGCGATTCGTCCTGTC 60.109 55.000 8.03 0.00 0.00 3.51
52 53 0.320374 TTCCTTGCGATTCGTCCTGT 59.680 50.000 8.03 0.00 0.00 4.00
53 54 1.002366 CTTCCTTGCGATTCGTCCTG 58.998 55.000 8.03 0.00 0.00 3.86
54 55 0.608640 ACTTCCTTGCGATTCGTCCT 59.391 50.000 8.03 0.00 0.00 3.85
55 56 1.439679 AACTTCCTTGCGATTCGTCC 58.560 50.000 8.03 0.00 0.00 4.79
56 57 2.347755 GGTAACTTCCTTGCGATTCGTC 59.652 50.000 8.03 0.94 0.00 4.20
57 58 2.289195 TGGTAACTTCCTTGCGATTCGT 60.289 45.455 8.03 0.00 37.61 3.85
58 59 2.343101 TGGTAACTTCCTTGCGATTCG 58.657 47.619 0.62 0.62 37.61 3.34
59 60 4.000988 TCTTGGTAACTTCCTTGCGATTC 58.999 43.478 0.00 0.00 37.61 2.52
60 61 4.015872 TCTTGGTAACTTCCTTGCGATT 57.984 40.909 0.00 0.00 37.61 3.34
61 62 3.695830 TCTTGGTAACTTCCTTGCGAT 57.304 42.857 0.00 0.00 37.61 4.58
62 63 3.399330 CTTCTTGGTAACTTCCTTGCGA 58.601 45.455 0.00 0.00 37.61 5.10
63 64 2.484264 CCTTCTTGGTAACTTCCTTGCG 59.516 50.000 0.00 0.00 37.61 4.85
64 65 3.751518 TCCTTCTTGGTAACTTCCTTGC 58.248 45.455 0.00 0.00 37.07 4.01
65 66 4.156739 GCATCCTTCTTGGTAACTTCCTTG 59.843 45.833 0.00 0.00 37.07 3.61
66 67 4.202567 TGCATCCTTCTTGGTAACTTCCTT 60.203 41.667 0.00 0.00 37.07 3.36
67 68 3.330701 TGCATCCTTCTTGGTAACTTCCT 59.669 43.478 0.00 0.00 37.07 3.36
68 69 3.686016 TGCATCCTTCTTGGTAACTTCC 58.314 45.455 0.00 0.00 37.07 3.46
69 70 4.943705 TCATGCATCCTTCTTGGTAACTTC 59.056 41.667 0.00 0.00 37.07 3.01
70 71 4.922206 TCATGCATCCTTCTTGGTAACTT 58.078 39.130 0.00 0.00 37.07 2.66
71 72 4.574674 TCATGCATCCTTCTTGGTAACT 57.425 40.909 0.00 0.00 37.07 2.24
72 73 4.096984 CCTTCATGCATCCTTCTTGGTAAC 59.903 45.833 0.00 0.00 37.07 2.50
73 74 4.272489 CCTTCATGCATCCTTCTTGGTAA 58.728 43.478 0.00 0.00 37.07 2.85
74 75 3.889815 CCTTCATGCATCCTTCTTGGTA 58.110 45.455 0.00 0.00 37.07 3.25
75 76 2.731572 CCTTCATGCATCCTTCTTGGT 58.268 47.619 0.00 0.00 37.07 3.67
76 77 1.407979 GCCTTCATGCATCCTTCTTGG 59.592 52.381 0.00 0.00 37.10 3.61
77 78 1.407979 GGCCTTCATGCATCCTTCTTG 59.592 52.381 0.00 0.00 0.00 3.02
78 79 1.772836 GGCCTTCATGCATCCTTCTT 58.227 50.000 0.00 0.00 0.00 2.52
79 80 0.465097 CGGCCTTCATGCATCCTTCT 60.465 55.000 0.00 0.00 0.00 2.85
80 81 2.028130 CGGCCTTCATGCATCCTTC 58.972 57.895 0.00 0.00 0.00 3.46
81 82 2.123428 GCGGCCTTCATGCATCCTT 61.123 57.895 0.00 0.00 0.00 3.36
82 83 2.517875 GCGGCCTTCATGCATCCT 60.518 61.111 0.00 0.00 0.00 3.24
83 84 3.957535 CGCGGCCTTCATGCATCC 61.958 66.667 0.00 0.00 0.00 3.51
84 85 3.957535 CCGCGGCCTTCATGCATC 61.958 66.667 14.67 0.00 0.00 3.91
96 97 3.257561 CAATCTCTCACGCCGCGG 61.258 66.667 24.05 24.05 0.00 6.46
97 98 3.918220 GCAATCTCTCACGCCGCG 61.918 66.667 12.14 12.14 0.00 6.46
98 99 0.875908 TATGCAATCTCTCACGCCGC 60.876 55.000 0.00 0.00 0.00 6.53
99 100 1.788258 ATATGCAATCTCTCACGCCG 58.212 50.000 0.00 0.00 0.00 6.46
100 101 5.869753 ATAAATATGCAATCTCTCACGCC 57.130 39.130 0.00 0.00 0.00 5.68
101 102 6.036517 CCCTATAAATATGCAATCTCTCACGC 59.963 42.308 0.00 0.00 0.00 5.34
102 103 6.536582 CCCCTATAAATATGCAATCTCTCACG 59.463 42.308 0.00 0.00 0.00 4.35
103 104 6.825721 CCCCCTATAAATATGCAATCTCTCAC 59.174 42.308 0.00 0.00 0.00 3.51
104 105 6.505344 ACCCCCTATAAATATGCAATCTCTCA 59.495 38.462 0.00 0.00 0.00 3.27
105 106 6.825721 CACCCCCTATAAATATGCAATCTCTC 59.174 42.308 0.00 0.00 0.00 3.20
106 107 6.505344 TCACCCCCTATAAATATGCAATCTCT 59.495 38.462 0.00 0.00 0.00 3.10
107 108 6.721318 TCACCCCCTATAAATATGCAATCTC 58.279 40.000 0.00 0.00 0.00 2.75
108 109 6.718593 TCACCCCCTATAAATATGCAATCT 57.281 37.500 0.00 0.00 0.00 2.40
109 110 6.127619 GCTTCACCCCCTATAAATATGCAATC 60.128 42.308 0.00 0.00 0.00 2.67
110 111 5.716703 GCTTCACCCCCTATAAATATGCAAT 59.283 40.000 0.00 0.00 0.00 3.56
111 112 5.076873 GCTTCACCCCCTATAAATATGCAA 58.923 41.667 0.00 0.00 0.00 4.08
112 113 4.662278 GCTTCACCCCCTATAAATATGCA 58.338 43.478 0.00 0.00 0.00 3.96
113 114 3.689649 CGCTTCACCCCCTATAAATATGC 59.310 47.826 0.00 0.00 0.00 3.14
114 115 4.695455 CACGCTTCACCCCCTATAAATATG 59.305 45.833 0.00 0.00 0.00 1.78
115 116 4.806286 GCACGCTTCACCCCCTATAAATAT 60.806 45.833 0.00 0.00 0.00 1.28
116 117 3.495453 GCACGCTTCACCCCCTATAAATA 60.495 47.826 0.00 0.00 0.00 1.40
117 118 2.748465 GCACGCTTCACCCCCTATAAAT 60.748 50.000 0.00 0.00 0.00 1.40
118 119 1.407712 GCACGCTTCACCCCCTATAAA 60.408 52.381 0.00 0.00 0.00 1.40
119 120 0.179468 GCACGCTTCACCCCCTATAA 59.821 55.000 0.00 0.00 0.00 0.98
120 121 0.689745 AGCACGCTTCACCCCCTATA 60.690 55.000 0.00 0.00 0.00 1.31
121 122 0.689745 TAGCACGCTTCACCCCCTAT 60.690 55.000 0.00 0.00 0.00 2.57
122 123 0.689745 ATAGCACGCTTCACCCCCTA 60.690 55.000 0.00 0.00 0.00 3.53
123 124 1.995626 ATAGCACGCTTCACCCCCT 60.996 57.895 0.00 0.00 0.00 4.79
124 125 1.819632 CATAGCACGCTTCACCCCC 60.820 63.158 0.00 0.00 0.00 5.40
125 126 1.819632 CCATAGCACGCTTCACCCC 60.820 63.158 0.00 0.00 0.00 4.95
126 127 0.676782 AACCATAGCACGCTTCACCC 60.677 55.000 0.00 0.00 0.00 4.61
127 128 1.165270 AAACCATAGCACGCTTCACC 58.835 50.000 0.00 0.00 0.00 4.02
128 129 2.031157 ACAAAACCATAGCACGCTTCAC 60.031 45.455 0.00 0.00 0.00 3.18
129 130 2.225491 GACAAAACCATAGCACGCTTCA 59.775 45.455 0.00 0.00 0.00 3.02
130 131 2.484264 AGACAAAACCATAGCACGCTTC 59.516 45.455 0.00 0.00 0.00 3.86
131 132 2.504367 AGACAAAACCATAGCACGCTT 58.496 42.857 0.00 0.00 0.00 4.68
132 133 2.185004 AGACAAAACCATAGCACGCT 57.815 45.000 0.00 0.00 0.00 5.07
133 134 2.739913 TGTAGACAAAACCATAGCACGC 59.260 45.455 0.00 0.00 0.00 5.34
134 135 4.259810 CGATGTAGACAAAACCATAGCACG 60.260 45.833 0.00 0.00 0.00 5.34
135 136 4.630069 ACGATGTAGACAAAACCATAGCAC 59.370 41.667 0.00 0.00 0.00 4.40
136 137 4.629634 CACGATGTAGACAAAACCATAGCA 59.370 41.667 0.00 0.00 0.00 3.49
137 138 4.630069 ACACGATGTAGACAAAACCATAGC 59.370 41.667 0.00 0.00 0.00 2.97
138 139 9.181805 CTATACACGATGTAGACAAAACCATAG 57.818 37.037 0.00 0.00 36.14 2.23
139 140 8.139350 CCTATACACGATGTAGACAAAACCATA 58.861 37.037 0.00 0.00 36.14 2.74
140 141 6.984474 CCTATACACGATGTAGACAAAACCAT 59.016 38.462 0.00 0.00 36.14 3.55
141 142 6.071221 ACCTATACACGATGTAGACAAAACCA 60.071 38.462 0.00 0.00 36.14 3.67
142 143 6.335777 ACCTATACACGATGTAGACAAAACC 58.664 40.000 0.00 0.00 36.14 3.27
143 144 7.823149 AACCTATACACGATGTAGACAAAAC 57.177 36.000 0.00 0.00 36.14 2.43
144 145 8.308931 AGAAACCTATACACGATGTAGACAAAA 58.691 33.333 0.00 0.00 36.14 2.44
145 146 7.833786 AGAAACCTATACACGATGTAGACAAA 58.166 34.615 0.00 0.00 36.14 2.83
146 147 7.400599 AGAAACCTATACACGATGTAGACAA 57.599 36.000 0.00 0.00 36.14 3.18
147 148 7.400599 AAGAAACCTATACACGATGTAGACA 57.599 36.000 0.00 0.00 36.14 3.41
148 149 9.962783 ATAAAGAAACCTATACACGATGTAGAC 57.037 33.333 0.00 0.00 36.14 2.59
164 165 9.856162 TGGACCCATAACTTATATAAAGAAACC 57.144 33.333 0.00 0.00 0.00 3.27
166 167 9.856162 GGTGGACCCATAACTTATATAAAGAAA 57.144 33.333 0.00 0.00 0.00 2.52
167 168 9.232882 AGGTGGACCCATAACTTATATAAAGAA 57.767 33.333 0.00 0.00 36.42 2.52
168 169 8.808240 AGGTGGACCCATAACTTATATAAAGA 57.192 34.615 0.00 0.00 36.42 2.52
169 170 9.284968 CAAGGTGGACCCATAACTTATATAAAG 57.715 37.037 0.00 0.00 36.42 1.85
170 171 8.221944 CCAAGGTGGACCCATAACTTATATAAA 58.778 37.037 0.00 0.00 40.96 1.40
171 172 7.351454 ACCAAGGTGGACCCATAACTTATATAA 59.649 37.037 0.18 0.00 40.96 0.98
172 173 6.852908 ACCAAGGTGGACCCATAACTTATATA 59.147 38.462 0.18 0.00 40.96 0.86
173 174 5.674958 ACCAAGGTGGACCCATAACTTATAT 59.325 40.000 0.18 0.00 40.96 0.86
174 175 5.041015 ACCAAGGTGGACCCATAACTTATA 58.959 41.667 0.18 0.00 40.96 0.98
175 176 3.856206 ACCAAGGTGGACCCATAACTTAT 59.144 43.478 0.18 0.00 40.96 1.73
176 177 3.261962 ACCAAGGTGGACCCATAACTTA 58.738 45.455 0.18 0.00 40.96 2.24
177 178 2.070573 ACCAAGGTGGACCCATAACTT 58.929 47.619 0.18 0.00 40.96 2.66
178 179 1.755200 ACCAAGGTGGACCCATAACT 58.245 50.000 0.18 0.00 40.96 2.24
179 180 2.597578 AACCAAGGTGGACCCATAAC 57.402 50.000 0.18 0.00 40.96 1.89
180 181 4.292571 TCATAAACCAAGGTGGACCCATAA 59.707 41.667 0.18 0.00 40.96 1.90
181 182 3.853181 TCATAAACCAAGGTGGACCCATA 59.147 43.478 0.18 0.00 40.96 2.74
182 183 2.652348 TCATAAACCAAGGTGGACCCAT 59.348 45.455 0.18 0.00 40.96 4.00
183 184 2.066592 TCATAAACCAAGGTGGACCCA 58.933 47.619 0.18 0.00 40.96 4.51
184 185 2.891191 TCATAAACCAAGGTGGACCC 57.109 50.000 0.18 0.00 40.96 4.46
185 186 6.263168 CAGATATTCATAAACCAAGGTGGACC 59.737 42.308 0.18 0.00 40.96 4.46
186 187 7.012421 GTCAGATATTCATAAACCAAGGTGGAC 59.988 40.741 0.18 0.00 40.96 4.02
187 188 7.054124 GTCAGATATTCATAAACCAAGGTGGA 58.946 38.462 0.18 0.00 40.96 4.02
188 189 6.017934 CGTCAGATATTCATAAACCAAGGTGG 60.018 42.308 0.00 0.00 45.02 4.61
189 190 6.017934 CCGTCAGATATTCATAAACCAAGGTG 60.018 42.308 0.00 0.00 0.00 4.00
190 191 6.055588 CCGTCAGATATTCATAAACCAAGGT 58.944 40.000 0.00 0.00 0.00 3.50
191 192 6.055588 ACCGTCAGATATTCATAAACCAAGG 58.944 40.000 0.00 0.00 0.00 3.61
192 193 7.553881 AACCGTCAGATATTCATAAACCAAG 57.446 36.000 0.00 0.00 0.00 3.61
194 195 9.701098 GTATAACCGTCAGATATTCATAAACCA 57.299 33.333 0.00 0.00 0.00 3.67
195 196 9.924650 AGTATAACCGTCAGATATTCATAAACC 57.075 33.333 0.00 0.00 0.00 3.27
198 199 9.836076 CGAAGTATAACCGTCAGATATTCATAA 57.164 33.333 0.00 0.00 0.00 1.90
199 200 9.006839 ACGAAGTATAACCGTCAGATATTCATA 57.993 33.333 0.00 0.00 41.94 2.15
200 201 7.883217 ACGAAGTATAACCGTCAGATATTCAT 58.117 34.615 0.00 0.00 41.94 2.57
201 202 7.268199 ACGAAGTATAACCGTCAGATATTCA 57.732 36.000 0.00 0.00 41.94 2.57
202 203 7.859377 TCAACGAAGTATAACCGTCAGATATTC 59.141 37.037 0.00 0.00 45.00 1.75
203 204 7.709947 TCAACGAAGTATAACCGTCAGATATT 58.290 34.615 0.00 0.00 45.00 1.28
204 205 7.268199 TCAACGAAGTATAACCGTCAGATAT 57.732 36.000 0.00 0.00 45.00 1.63
205 206 6.682423 TCAACGAAGTATAACCGTCAGATA 57.318 37.500 0.00 0.00 45.00 1.98
206 207 5.571784 TCAACGAAGTATAACCGTCAGAT 57.428 39.130 0.00 0.00 45.00 2.90
207 208 5.571784 ATCAACGAAGTATAACCGTCAGA 57.428 39.130 0.00 0.00 45.00 3.27
208 209 5.005394 CCAATCAACGAAGTATAACCGTCAG 59.995 44.000 0.00 0.00 45.00 3.51
209 210 4.865925 CCAATCAACGAAGTATAACCGTCA 59.134 41.667 0.00 0.00 45.00 4.35
210 211 4.269363 CCCAATCAACGAAGTATAACCGTC 59.731 45.833 0.00 0.00 45.00 4.79
211 212 4.081531 TCCCAATCAACGAAGTATAACCGT 60.082 41.667 0.00 0.00 45.00 4.83
212 213 4.435425 TCCCAATCAACGAAGTATAACCG 58.565 43.478 0.00 0.00 45.00 4.44
213 214 6.746745 TTTCCCAATCAACGAAGTATAACC 57.253 37.500 0.00 0.00 45.00 2.85
214 215 7.248437 CCTTTTCCCAATCAACGAAGTATAAC 58.752 38.462 0.00 0.00 45.00 1.89
215 216 6.127842 GCCTTTTCCCAATCAACGAAGTATAA 60.128 38.462 0.00 0.00 45.00 0.98
216 217 5.355910 GCCTTTTCCCAATCAACGAAGTATA 59.644 40.000 0.00 0.00 45.00 1.47
217 218 4.157840 GCCTTTTCCCAATCAACGAAGTAT 59.842 41.667 0.00 0.00 45.00 2.12
218 219 3.504520 GCCTTTTCCCAATCAACGAAGTA 59.495 43.478 0.00 0.00 45.00 2.24
220 221 2.295909 TGCCTTTTCCCAATCAACGAAG 59.704 45.455 0.00 0.00 0.00 3.79
221 222 2.035321 GTGCCTTTTCCCAATCAACGAA 59.965 45.455 0.00 0.00 0.00 3.85
222 223 1.611491 GTGCCTTTTCCCAATCAACGA 59.389 47.619 0.00 0.00 0.00 3.85
223 224 1.339610 TGTGCCTTTTCCCAATCAACG 59.660 47.619 0.00 0.00 0.00 4.10
224 225 2.547855 GGTGTGCCTTTTCCCAATCAAC 60.548 50.000 0.00 0.00 0.00 3.18
225 226 1.691434 GGTGTGCCTTTTCCCAATCAA 59.309 47.619 0.00 0.00 0.00 2.57
226 227 1.337118 GGTGTGCCTTTTCCCAATCA 58.663 50.000 0.00 0.00 0.00 2.57
227 228 1.337118 TGGTGTGCCTTTTCCCAATC 58.663 50.000 0.00 0.00 35.27 2.67
228 229 1.799933 TTGGTGTGCCTTTTCCCAAT 58.200 45.000 0.00 0.00 35.27 3.16
229 230 1.573108 TTTGGTGTGCCTTTTCCCAA 58.427 45.000 0.00 0.00 33.53 4.12
230 231 1.799933 ATTTGGTGTGCCTTTTCCCA 58.200 45.000 0.00 0.00 35.27 4.37
231 232 2.928801 AATTTGGTGTGCCTTTTCCC 57.071 45.000 0.00 0.00 35.27 3.97
232 233 4.694982 CCATTAATTTGGTGTGCCTTTTCC 59.305 41.667 0.00 0.00 35.27 3.13
233 234 5.861222 CCATTAATTTGGTGTGCCTTTTC 57.139 39.130 0.00 0.00 35.27 2.29
253 254 9.184523 CCCACAATAATTAGAAACATCTAACCA 57.815 33.333 0.70 0.00 35.34 3.67
254 255 9.403583 TCCCACAATAATTAGAAACATCTAACC 57.596 33.333 0.70 0.00 35.34 2.85
299 300 7.060421 AGTCCTTGATAAACTCACCAGAAAAA 58.940 34.615 0.00 0.00 32.17 1.94
300 301 6.601332 AGTCCTTGATAAACTCACCAGAAAA 58.399 36.000 0.00 0.00 32.17 2.29
301 302 6.187727 AGTCCTTGATAAACTCACCAGAAA 57.812 37.500 0.00 0.00 32.17 2.52
302 303 5.825593 AGTCCTTGATAAACTCACCAGAA 57.174 39.130 0.00 0.00 32.17 3.02
303 304 5.825593 AAGTCCTTGATAAACTCACCAGA 57.174 39.130 0.00 0.00 32.17 3.86
304 305 6.884280 AAAAGTCCTTGATAAACTCACCAG 57.116 37.500 0.00 0.00 32.17 4.00
340 341 9.802039 GCTCTAGCCTCTAGGTAACATATATAT 57.198 37.037 0.00 0.00 37.57 0.86
341 342 8.779031 TGCTCTAGCCTCTAGGTAACATATATA 58.221 37.037 0.00 0.00 41.18 0.86
342 343 7.644062 TGCTCTAGCCTCTAGGTAACATATAT 58.356 38.462 0.00 0.00 41.18 0.86
343 344 7.029053 TGCTCTAGCCTCTAGGTAACATATA 57.971 40.000 0.00 0.00 41.18 0.86
344 345 5.893500 TGCTCTAGCCTCTAGGTAACATAT 58.106 41.667 0.00 0.00 41.18 1.78
345 346 5.163077 ACTGCTCTAGCCTCTAGGTAACATA 60.163 44.000 0.00 0.00 41.18 2.29
346 347 4.148838 CTGCTCTAGCCTCTAGGTAACAT 58.851 47.826 0.00 0.00 41.18 2.71
347 348 3.053544 ACTGCTCTAGCCTCTAGGTAACA 60.054 47.826 0.00 0.00 41.18 2.41
348 349 3.558033 ACTGCTCTAGCCTCTAGGTAAC 58.442 50.000 0.00 0.00 41.18 2.50
349 350 3.955524 ACTGCTCTAGCCTCTAGGTAA 57.044 47.619 0.00 0.00 41.18 2.85
350 351 5.586155 ATTACTGCTCTAGCCTCTAGGTA 57.414 43.478 0.00 0.00 41.18 3.08
351 352 3.955524 TTACTGCTCTAGCCTCTAGGT 57.044 47.619 0.00 0.00 41.18 3.08
352 353 4.021544 CCAATTACTGCTCTAGCCTCTAGG 60.022 50.000 0.00 0.00 41.18 3.02
353 354 4.830046 TCCAATTACTGCTCTAGCCTCTAG 59.170 45.833 0.00 0.00 41.18 2.43
354 355 4.804597 TCCAATTACTGCTCTAGCCTCTA 58.195 43.478 0.00 0.00 41.18 2.43
355 356 3.647636 TCCAATTACTGCTCTAGCCTCT 58.352 45.455 0.00 0.00 41.18 3.69
356 357 4.615588 ATCCAATTACTGCTCTAGCCTC 57.384 45.455 0.00 0.00 41.18 4.70
357 358 5.151454 ACTATCCAATTACTGCTCTAGCCT 58.849 41.667 0.00 0.00 41.18 4.58
358 359 5.245075 AGACTATCCAATTACTGCTCTAGCC 59.755 44.000 0.00 0.00 41.18 3.93
359 360 6.155827 CAGACTATCCAATTACTGCTCTAGC 58.844 44.000 0.00 0.00 42.50 3.42
360 361 7.283625 ACAGACTATCCAATTACTGCTCTAG 57.716 40.000 0.00 0.00 0.00 2.43
361 362 7.661536 AACAGACTATCCAATTACTGCTCTA 57.338 36.000 0.00 0.00 0.00 2.43
362 363 6.552445 AACAGACTATCCAATTACTGCTCT 57.448 37.500 0.00 0.00 0.00 4.09
363 364 6.595716 ACAAACAGACTATCCAATTACTGCTC 59.404 38.462 0.00 0.00 0.00 4.26
364 365 6.476378 ACAAACAGACTATCCAATTACTGCT 58.524 36.000 0.00 0.00 0.00 4.24
365 366 6.743575 ACAAACAGACTATCCAATTACTGC 57.256 37.500 0.00 0.00 0.00 4.40
391 392 9.128107 CGCTAGCTTTGATTTGAAAAAGAAATA 57.872 29.630 13.93 0.00 35.79 1.40
392 393 7.653311 ACGCTAGCTTTGATTTGAAAAAGAAAT 59.347 29.630 13.93 0.00 35.79 2.17
448 452 1.348938 CAGCGTACGTCGGAGAGAG 59.651 63.158 17.90 0.00 36.95 3.20
685 860 0.036010 ATGTAGCCTGTGGTGTCTGC 60.036 55.000 0.00 0.00 0.00 4.26
688 863 2.185004 ACAATGTAGCCTGTGGTGTC 57.815 50.000 0.00 0.00 0.00 3.67
707 882 2.523440 AGGTCACAGGACGTCCAAA 58.477 52.632 35.00 15.01 45.28 3.28
708 883 4.288234 AGGTCACAGGACGTCCAA 57.712 55.556 35.00 15.37 45.28 3.53
791 979 0.320374 TGCCGGTCAAGATCGAAGTT 59.680 50.000 1.90 0.00 37.01 2.66
883 1080 0.916358 ATGTAGGGCAGAGCTGGGTT 60.916 55.000 0.00 0.00 0.00 4.11
886 1083 1.673168 GAAATGTAGGGCAGAGCTGG 58.327 55.000 0.00 0.00 0.00 4.85
896 1093 1.064505 CGCATGTGCTGGAAATGTAGG 59.935 52.381 3.25 0.00 39.32 3.18
901 1098 2.818130 AAAACGCATGTGCTGGAAAT 57.182 40.000 6.08 0.00 39.32 2.17
904 1101 2.881513 TCTTAAAAACGCATGTGCTGGA 59.118 40.909 6.08 0.00 39.32 3.86
916 1113 3.062234 CGTCGGGAGATGCTCTTAAAAAC 59.938 47.826 0.00 0.00 43.27 2.43
1761 2133 5.606348 TGCTTGTTAAGTTCCAAAACCAT 57.394 34.783 0.00 0.00 35.92 3.55
1876 2248 2.235016 TGTGGCTTTGTTACCCATGTC 58.765 47.619 0.00 0.00 0.00 3.06
2691 3318 4.385199 CCAAACTCTAATGGCATAGGACCA 60.385 45.833 0.00 0.00 42.61 4.02
2698 3325 3.659183 AGCTCCAAACTCTAATGGCAT 57.341 42.857 0.00 0.00 36.62 4.40
2726 3353 9.566432 AATTGGAGGATAATGTCAATTCTACTC 57.434 33.333 0.00 0.00 34.23 2.59
2763 3390 9.778741 AACATACAAACAGATATCGGAATATGT 57.221 29.630 10.01 12.64 32.84 2.29
2772 3399 7.770897 AGGTTCCTCAACATACAAACAGATATC 59.229 37.037 0.00 0.00 33.70 1.63
2844 3471 1.030488 TAGGCTCTCGAGAACACCGG 61.030 60.000 17.36 0.00 0.00 5.28


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.