Multiple sequence alignment - TraesCS6D01G015100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G015100 chr6D 100.000 3226 0 0 1 3226 6317736 6314511 0.000000e+00 5958.0
1 TraesCS6D01G015100 chr6D 96.407 167 6 0 1255 1421 98118140 98117974 3.170000e-70 276.0
2 TraesCS6D01G015100 chr6D 84.375 96 14 1 1455 1550 114241087 114241181 3.430000e-15 93.5
3 TraesCS6D01G015100 chr6D 89.189 74 6 1 2655 2728 6990479 6990408 1.230000e-14 91.6
4 TraesCS6D01G015100 chr6D 73.885 157 35 6 237 389 200636219 200636373 1.250000e-04 58.4
5 TraesCS6D01G015100 chr6D 74.194 155 32 8 240 389 358601850 358601699 1.250000e-04 58.4
6 TraesCS6D01G015100 chr6A 91.823 1223 49 12 1 1205 5650883 5649694 0.000000e+00 1657.0
7 TraesCS6D01G015100 chr6A 90.581 1274 54 11 1 1258 5858507 5857284 0.000000e+00 1628.0
8 TraesCS6D01G015100 chr6A 91.117 1182 52 14 1 1162 5753302 5752154 0.000000e+00 1552.0
9 TraesCS6D01G015100 chr6A 92.439 820 34 11 1563 2382 5857229 5856438 0.000000e+00 1146.0
10 TraesCS6D01G015100 chr6A 92.030 803 35 12 1580 2382 5649583 5648810 0.000000e+00 1101.0
11 TraesCS6D01G015100 chr6A 91.325 634 24 14 1750 2382 5752179 5751576 0.000000e+00 837.0
12 TraesCS6D01G015100 chr6A 94.505 91 3 2 2382 2472 597456546 597456458 4.340000e-29 139.0
13 TraesCS6D01G015100 chr6A 98.333 60 1 0 2974 3033 5856444 5856385 4.400000e-19 106.0
14 TraesCS6D01G015100 chr6A 96.667 60 2 0 2974 3033 5648816 5648757 2.050000e-17 100.0
15 TraesCS6D01G015100 chr6A 96.667 60 2 0 2974 3033 5751582 5751523 2.050000e-17 100.0
16 TraesCS6D01G015100 chr6B 90.101 990 56 18 1417 2382 11573198 11572227 0.000000e+00 1247.0
17 TraesCS6D01G015100 chr6B 91.667 348 17 6 920 1256 11573543 11573197 3.770000e-129 472.0
18 TraesCS6D01G015100 chr7A 88.514 592 31 21 2382 2961 111111029 111111595 0.000000e+00 682.0
19 TraesCS6D01G015100 chr7A 87.374 594 35 22 2382 2963 111112127 111112692 0.000000e+00 645.0
20 TraesCS6D01G015100 chr7A 90.789 76 6 1 1455 1529 471787901 471787826 2.050000e-17 100.0
21 TraesCS6D01G015100 chr7A 89.394 66 5 1 2654 2719 85742878 85742941 7.420000e-12 82.4
22 TraesCS6D01G015100 chr3D 86.747 581 37 19 2395 2962 599397028 599397581 7.650000e-171 610.0
23 TraesCS6D01G015100 chr3D 90.722 291 26 1 1589 1879 497820094 497819805 1.400000e-103 387.0
24 TraesCS6D01G015100 chr3D 86.207 290 40 0 1589 1878 497825872 497825583 6.720000e-82 315.0
25 TraesCS6D01G015100 chr3D 94.652 187 9 1 2756 2941 606565519 606565705 4.070000e-74 289.0
26 TraesCS6D01G015100 chr3D 84.483 290 41 1 1589 1874 518754629 518754918 1.890000e-72 283.0
27 TraesCS6D01G015100 chr3D 95.930 172 7 0 1255 1426 42893222 42893051 2.450000e-71 279.0
28 TraesCS6D01G015100 chr3D 94.857 175 8 1 1253 1427 3199633 3199460 4.100000e-69 272.0
29 TraesCS6D01G015100 chr3D 85.714 91 13 0 1455 1545 404979686 404979776 2.650000e-16 97.1
30 TraesCS6D01G015100 chr3A 86.713 286 38 0 1589 1874 654236341 654236626 5.190000e-83 318.0
31 TraesCS6D01G015100 chr3A 93.367 196 10 2 3031 3226 102253808 102253616 1.460000e-73 287.0
32 TraesCS6D01G015100 chr3A 82.573 241 40 2 1004 1243 636687003 636687242 9.070000e-51 211.0
33 TraesCS6D01G015100 chr3A 82.305 243 29 12 2723 2961 35467987 35468219 7.060000e-47 198.0
34 TraesCS6D01G015100 chr3A 81.893 243 29 12 2723 2961 35465874 35466105 1.180000e-44 191.0
35 TraesCS6D01G015100 chr3A 94.505 91 3 2 2382 2472 392769630 392769718 4.340000e-29 139.0
36 TraesCS6D01G015100 chr5B 94.231 208 9 3 2756 2960 611825347 611825140 6.720000e-82 315.0
37 TraesCS6D01G015100 chr7B 81.959 388 37 21 2583 2962 514284025 514284387 6.770000e-77 298.0
38 TraesCS6D01G015100 chr7B 83.197 244 25 14 2723 2961 726301993 726302225 3.260000e-50 209.0
39 TraesCS6D01G015100 chr7B 95.699 93 1 1 2382 2474 514283022 514283111 2.590000e-31 147.0
40 TraesCS6D01G015100 chr7B 85.263 95 14 0 1455 1549 537461487 537461393 7.370000e-17 99.0
41 TraesCS6D01G015100 chr7B 89.333 75 6 1 2654 2728 74860374 74860302 3.430000e-15 93.5
42 TraesCS6D01G015100 chr7B 85.882 85 12 0 1461 1545 715085566 715085482 1.230000e-14 91.6
43 TraesCS6D01G015100 chr1B 93.878 196 9 2 3031 3226 448705067 448704875 3.150000e-75 292.0
44 TraesCS6D01G015100 chrUn 92.965 199 11 2 3028 3226 60465076 60465271 1.460000e-73 287.0
45 TraesCS6D01G015100 chrUn 93.367 196 10 2 3031 3226 298123920 298124112 1.460000e-73 287.0
46 TraesCS6D01G015100 chrUn 93.367 196 10 2 3031 3226 298128811 298129003 1.460000e-73 287.0
47 TraesCS6D01G015100 chrUn 93.367 196 10 2 3031 3226 308587023 308586831 1.460000e-73 287.0
48 TraesCS6D01G015100 chrUn 89.394 66 5 1 2654 2719 238124818 238124881 7.420000e-12 82.4
49 TraesCS6D01G015100 chr2B 92.500 200 15 0 3027 3226 30516197 30516396 1.460000e-73 287.0
50 TraesCS6D01G015100 chr7D 92.857 196 11 2 3031 3226 497582915 497582723 6.810000e-72 281.0
51 TraesCS6D01G015100 chr7D 95.758 165 7 0 1254 1418 604569204 604569368 1.910000e-67 267.0
52 TraesCS6D01G015100 chr7D 75.159 157 33 6 237 389 247399896 247400050 5.770000e-08 69.4
53 TraesCS6D01G015100 chr7D 74.684 158 32 8 237 389 140429350 140429504 2.690000e-06 63.9
54 TraesCS6D01G015100 chr7D 94.872 39 2 0 2995 3033 400150575 400150537 9.660000e-06 62.1
55 TraesCS6D01G015100 chr2D 96.988 166 5 0 1255 1420 5108110 5107945 2.450000e-71 279.0
56 TraesCS6D01G015100 chr2D 95.906 171 6 1 1248 1418 378061856 378062025 3.170000e-70 276.0
57 TraesCS6D01G015100 chr5D 96.951 164 5 0 1255 1418 391052807 391052970 3.170000e-70 276.0
58 TraesCS6D01G015100 chr5D 95.349 172 7 1 1251 1421 476789487 476789658 4.100000e-69 272.0
59 TraesCS6D01G015100 chr5D 96.341 164 6 0 1255 1418 29505253 29505416 1.470000e-68 270.0
60 TraesCS6D01G015100 chr5D 86.207 87 12 0 1461 1547 522142226 522142140 9.530000e-16 95.3
61 TraesCS6D01G015100 chr5D 86.207 87 10 2 1461 1546 361654756 361654671 3.430000e-15 93.5
62 TraesCS6D01G015100 chr5D 74.194 155 32 8 240 389 325223458 325223307 1.250000e-04 58.4
63 TraesCS6D01G015100 chr3B 93.085 188 13 0 3031 3218 807224169 807224356 3.170000e-70 276.0
64 TraesCS6D01G015100 chr3B 83.884 242 33 2 1633 1874 683508753 683508988 3.240000e-55 226.0
65 TraesCS6D01G015100 chr3B 81.743 241 42 2 1004 1243 658065132 658064893 1.960000e-47 200.0
66 TraesCS6D01G015100 chr5A 86.957 207 17 7 2757 2959 706472596 706472796 1.160000e-54 224.0
67 TraesCS6D01G015100 chr5A 86.207 203 23 3 2757 2959 706474952 706475149 7.010000e-52 215.0
68 TraesCS6D01G015100 chr5A 86.567 201 17 7 2757 2953 706474168 706474362 2.520000e-51 213.0
69 TraesCS6D01G015100 chr5A 85.507 207 22 6 2757 2959 706473381 706473583 3.260000e-50 209.0
70 TraesCS6D01G015100 chr5A 95.604 91 2 2 2382 2472 521722914 521723002 9.330000e-31 145.0
71 TraesCS6D01G015100 chr1A 95.604 91 2 2 2382 2472 288480926 288480838 9.330000e-31 145.0
72 TraesCS6D01G015100 chr1A 94.505 91 3 2 2382 2472 288480014 288479926 4.340000e-29 139.0
73 TraesCS6D01G015100 chr2A 85.714 91 13 0 1455 1545 41656278 41656368 2.650000e-16 97.1
74 TraesCS6D01G015100 chr4A 85.882 85 12 0 1461 1545 117283271 117283187 1.230000e-14 91.6
75 TraesCS6D01G015100 chr4B 81.197 117 17 4 379 492 119272288 119272174 4.430000e-14 89.8
76 TraesCS6D01G015100 chr1D 89.394 66 5 1 2654 2719 86093913 86093850 7.420000e-12 82.4
77 TraesCS6D01G015100 chr4D 74.839 155 31 8 240 389 348180844 348180693 2.690000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G015100 chr6D 6314511 6317736 3225 True 5958.000000 5958 100.000000 1 3226 1 chr6D.!!$R1 3225
1 TraesCS6D01G015100 chr6A 5856385 5858507 2122 True 960.000000 1628 93.784333 1 3033 3 chr6A.!!$R4 3032
2 TraesCS6D01G015100 chr6A 5648757 5650883 2126 True 952.666667 1657 93.506667 1 3033 3 chr6A.!!$R2 3032
3 TraesCS6D01G015100 chr6A 5751523 5753302 1779 True 829.666667 1552 93.036333 1 3033 3 chr6A.!!$R3 3032
4 TraesCS6D01G015100 chr6B 11572227 11573543 1316 True 859.500000 1247 90.884000 920 2382 2 chr6B.!!$R1 1462
5 TraesCS6D01G015100 chr7A 111111029 111112692 1663 False 663.500000 682 87.944000 2382 2963 2 chr7A.!!$F2 581
6 TraesCS6D01G015100 chr3D 599397028 599397581 553 False 610.000000 610 86.747000 2395 2962 1 chr3D.!!$F3 567
7 TraesCS6D01G015100 chr7B 514283022 514284387 1365 False 222.500000 298 88.829000 2382 2962 2 chr7B.!!$F2 580
8 TraesCS6D01G015100 chr5A 706472596 706475149 2553 False 215.250000 224 86.309500 2757 2959 4 chr5A.!!$F2 202

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
984 1003 0.107017 CATGGGAAGGAACGCAGGAT 60.107 55.0 0.0 0.0 36.82 3.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2751 2925 0.032952 GCTCACACCACGTACAAGGA 59.967 55.0 7.53 0.0 0.0 3.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 8.085720 TGTTTCATGTTAGAATTTGGCATTTG 57.914 30.769 0.00 0.00 0.00 2.32
37 38 4.837860 AGAATTTGGCATTTGTAGGGTTCA 59.162 37.500 0.00 0.00 0.00 3.18
104 106 7.695074 AATGGATATGATGGAAATTTGGGTT 57.305 32.000 0.00 0.00 0.00 4.11
109 111 3.737850 TGATGGAAATTTGGGTTGCAAC 58.262 40.909 21.59 21.59 29.66 4.17
186 188 8.865090 TCATATGTTTGTTCTTGGGTACATTTT 58.135 29.630 1.90 0.00 0.00 1.82
208 210 8.984891 TTTTGAGGAATGCATGTATAAAACAG 57.015 30.769 0.00 0.00 42.70 3.16
210 212 8.523915 TTGAGGAATGCATGTATAAAACAGAT 57.476 30.769 0.00 0.00 42.70 2.90
213 215 7.934457 AGGAATGCATGTATAAAACAGATGAC 58.066 34.615 0.00 0.00 42.70 3.06
262 264 2.698274 GGGTGTTTGGTTCACAGGAATT 59.302 45.455 0.00 0.00 37.52 2.17
266 268 3.636300 TGTTTGGTTCACAGGAATTGGAG 59.364 43.478 0.00 0.00 35.05 3.86
282 284 6.779539 GGAATTGGAGAACATAAGAATCCCAT 59.220 38.462 0.00 0.00 0.00 4.00
289 291 7.557719 GGAGAACATAAGAATCCCATTGAAGAA 59.442 37.037 0.00 0.00 0.00 2.52
372 374 1.467734 TCTTAGTCTCGTTCCTCGTGC 59.532 52.381 0.00 0.00 40.80 5.34
451 454 8.850454 TTCTAAAATTGTGACGAAAGGAAAAG 57.150 30.769 0.00 0.00 0.00 2.27
491 494 7.542890 TCTTTGTTACATGTCTTTGAAGCAAA 58.457 30.769 0.00 3.79 0.00 3.68
515 518 2.198827 TGAACTGTGCCACCATAAGG 57.801 50.000 0.00 0.00 42.21 2.69
518 521 2.969821 ACTGTGCCACCATAAGGAAA 57.030 45.000 0.00 0.00 38.69 3.13
520 523 3.571590 ACTGTGCCACCATAAGGAAAAA 58.428 40.909 0.00 0.00 38.69 1.94
558 561 7.866393 TGTGTTTCCTTCACTTTTCGTTTAAAA 59.134 29.630 0.00 0.00 36.83 1.52
559 562 8.865978 GTGTTTCCTTCACTTTTCGTTTAAAAT 58.134 29.630 0.00 0.00 36.49 1.82
577 580 9.366216 GTTTAAAATAAAGGAGGCCTTATTGTG 57.634 33.333 6.77 0.00 43.92 3.33
593 596 4.785346 ATTGTGGCACTAAGGATCTCAT 57.215 40.909 19.83 0.00 0.00 2.90
722 739 7.531857 TTTGAATCAAAGGTTTACATAGCCA 57.468 32.000 4.03 0.00 0.00 4.75
835 854 0.179018 AGCTTGACCACAGACCAACC 60.179 55.000 0.00 0.00 0.00 3.77
838 857 0.182537 TTGACCACAGACCAACCCAG 59.817 55.000 0.00 0.00 0.00 4.45
840 859 2.337879 GACCACAGACCAACCCAGCA 62.338 60.000 0.00 0.00 0.00 4.41
906 925 4.374702 GCACCGTTCAGCTGTGCG 62.375 66.667 14.67 17.97 45.56 5.34
930 949 1.570347 GGCGATGGTGTGCGTTACAA 61.570 55.000 0.00 0.00 41.89 2.41
968 987 2.513204 CAGCAGGTCGGGAGCATG 60.513 66.667 0.32 0.00 0.00 4.06
978 997 1.452108 GGGAGCATGGGAAGGAACG 60.452 63.158 0.00 0.00 0.00 3.95
981 1000 1.372087 GAGCATGGGAAGGAACGCAG 61.372 60.000 0.00 0.00 36.27 5.18
983 1002 1.299648 CATGGGAAGGAACGCAGGA 59.700 57.895 0.00 0.00 36.82 3.86
984 1003 0.107017 CATGGGAAGGAACGCAGGAT 60.107 55.000 0.00 0.00 36.82 3.24
1093 1123 0.969894 CTTCCTCAAGTCGTGGGAGT 59.030 55.000 0.00 0.00 30.20 3.85
1206 1236 1.406887 GGCACCAACGACACCATCTAT 60.407 52.381 0.00 0.00 0.00 1.98
1258 1288 5.116882 ACAAGGTCGCCTTAATTCATACTC 58.883 41.667 10.23 0.00 42.67 2.59
1259 1289 4.338379 AGGTCGCCTTAATTCATACTCC 57.662 45.455 0.00 0.00 0.00 3.85
1261 1291 3.071167 GGTCGCCTTAATTCATACTCCCT 59.929 47.826 0.00 0.00 0.00 4.20
1262 1292 4.308265 GTCGCCTTAATTCATACTCCCTC 58.692 47.826 0.00 0.00 0.00 4.30
1263 1293 3.323979 TCGCCTTAATTCATACTCCCTCC 59.676 47.826 0.00 0.00 0.00 4.30
1266 1296 4.444449 GCCTTAATTCATACTCCCTCCGTT 60.444 45.833 0.00 0.00 0.00 4.44
1267 1297 5.681639 CCTTAATTCATACTCCCTCCGTTT 58.318 41.667 0.00 0.00 0.00 3.60
1271 1301 6.555463 AATTCATACTCCCTCCGTTTCTAA 57.445 37.500 0.00 0.00 0.00 2.10
1272 1302 6.555463 ATTCATACTCCCTCCGTTTCTAAA 57.445 37.500 0.00 0.00 0.00 1.85
1275 1305 7.047460 TCATACTCCCTCCGTTTCTAAATAC 57.953 40.000 0.00 0.00 0.00 1.89
1276 1306 6.837568 TCATACTCCCTCCGTTTCTAAATACT 59.162 38.462 0.00 0.00 0.00 2.12
1278 1308 5.731591 ACTCCCTCCGTTTCTAAATACTTG 58.268 41.667 0.00 0.00 0.00 3.16
1279 1309 5.247792 ACTCCCTCCGTTTCTAAATACTTGT 59.752 40.000 0.00 0.00 0.00 3.16
1280 1310 5.727434 TCCCTCCGTTTCTAAATACTTGTC 58.273 41.667 0.00 0.00 0.00 3.18
1281 1311 5.482878 TCCCTCCGTTTCTAAATACTTGTCT 59.517 40.000 0.00 0.00 0.00 3.41
1282 1312 6.013984 TCCCTCCGTTTCTAAATACTTGTCTT 60.014 38.462 0.00 0.00 0.00 3.01
1285 1315 7.603024 CCTCCGTTTCTAAATACTTGTCTTTCT 59.397 37.037 0.00 0.00 0.00 2.52
1286 1316 9.635520 CTCCGTTTCTAAATACTTGTCTTTCTA 57.364 33.333 0.00 0.00 0.00 2.10
1287 1317 9.635520 TCCGTTTCTAAATACTTGTCTTTCTAG 57.364 33.333 0.00 0.00 0.00 2.43
1289 1319 8.381387 CGTTTCTAAATACTTGTCTTTCTAGGC 58.619 37.037 0.00 0.00 0.00 3.93
1290 1320 9.216117 GTTTCTAAATACTTGTCTTTCTAGGCA 57.784 33.333 0.00 0.00 33.22 4.75
1291 1321 9.959721 TTTCTAAATACTTGTCTTTCTAGGCAT 57.040 29.630 0.00 0.00 35.56 4.40
1293 1323 9.959721 TCTAAATACTTGTCTTTCTAGGCATTT 57.040 29.630 0.00 0.00 35.56 2.32
1296 1326 8.635765 AATACTTGTCTTTCTAGGCATTTCAA 57.364 30.769 0.00 0.00 35.56 2.69
1298 1328 7.530426 ACTTGTCTTTCTAGGCATTTCAAAT 57.470 32.000 0.00 0.00 35.56 2.32
1301 1331 6.913170 TGTCTTTCTAGGCATTTCAAATGAC 58.087 36.000 14.65 11.48 29.10 3.06
1303 1333 7.882791 TGTCTTTCTAGGCATTTCAAATGACTA 59.117 33.333 22.19 22.19 38.54 2.59
1305 1335 9.113838 TCTTTCTAGGCATTTCAAATGACTATC 57.886 33.333 23.50 1.52 38.80 2.08
1306 1336 7.482654 TTCTAGGCATTTCAAATGACTATCG 57.517 36.000 23.50 14.34 38.80 2.92
1309 1339 4.581824 AGGCATTTCAAATGACTATCGCAT 59.418 37.500 17.52 0.00 35.20 4.73
1310 1340 5.764686 AGGCATTTCAAATGACTATCGCATA 59.235 36.000 17.52 0.00 35.20 3.14
1311 1341 5.853282 GGCATTTCAAATGACTATCGCATAC 59.147 40.000 14.65 0.00 0.00 2.39
1313 1343 5.651172 TTTCAAATGACTATCGCATACGG 57.349 39.130 0.00 0.00 40.63 4.02
1314 1344 4.577834 TCAAATGACTATCGCATACGGA 57.422 40.909 0.00 0.00 40.63 4.69
1315 1345 5.134202 TCAAATGACTATCGCATACGGAT 57.866 39.130 0.00 0.00 40.63 4.18
1316 1346 4.923281 TCAAATGACTATCGCATACGGATG 59.077 41.667 2.22 2.22 40.63 3.51
1317 1347 4.521130 AATGACTATCGCATACGGATGT 57.479 40.909 9.90 0.00 40.63 3.06
1318 1348 5.638596 AATGACTATCGCATACGGATGTA 57.361 39.130 9.90 0.00 40.63 2.29
1319 1349 5.836821 ATGACTATCGCATACGGATGTAT 57.163 39.130 9.90 6.19 42.03 2.29
1360 1390 9.400638 GAGTATAGATTCACTCATTTTACTCCG 57.599 37.037 0.00 0.00 40.74 4.63
1361 1391 8.915036 AGTATAGATTCACTCATTTTACTCCGT 58.085 33.333 0.00 0.00 0.00 4.69
1364 1394 9.698309 ATAGATTCACTCATTTTACTCCGTATG 57.302 33.333 0.00 0.00 0.00 2.39
1365 1395 7.556844 AGATTCACTCATTTTACTCCGTATGT 58.443 34.615 0.00 0.00 0.00 2.29
1366 1396 8.692710 AGATTCACTCATTTTACTCCGTATGTA 58.307 33.333 0.00 0.00 0.00 2.29
1367 1397 8.873215 ATTCACTCATTTTACTCCGTATGTAG 57.127 34.615 0.00 0.00 0.00 2.74
1368 1398 7.400599 TCACTCATTTTACTCCGTATGTAGT 57.599 36.000 0.00 0.00 0.00 2.73
1369 1399 7.478322 TCACTCATTTTACTCCGTATGTAGTC 58.522 38.462 0.00 0.00 0.00 2.59
1370 1400 7.121611 TCACTCATTTTACTCCGTATGTAGTCA 59.878 37.037 0.00 0.00 0.00 3.41
1371 1401 7.220300 CACTCATTTTACTCCGTATGTAGTCAC 59.780 40.741 0.00 0.00 0.00 3.67
1372 1402 7.122353 ACTCATTTTACTCCGTATGTAGTCACT 59.878 37.037 0.00 0.00 0.00 3.41
1373 1403 7.833786 TCATTTTACTCCGTATGTAGTCACTT 58.166 34.615 0.00 0.00 0.00 3.16
1374 1404 7.758076 TCATTTTACTCCGTATGTAGTCACTTG 59.242 37.037 0.00 0.00 0.00 3.16
1375 1405 6.579666 TTTACTCCGTATGTAGTCACTTGT 57.420 37.500 0.00 0.00 0.00 3.16
1376 1406 6.579666 TTACTCCGTATGTAGTCACTTGTT 57.420 37.500 0.00 0.00 0.00 2.83
1377 1407 4.806330 ACTCCGTATGTAGTCACTTGTTG 58.194 43.478 0.00 0.00 0.00 3.33
1378 1408 4.521639 ACTCCGTATGTAGTCACTTGTTGA 59.478 41.667 0.00 0.00 0.00 3.18
1379 1409 5.010314 ACTCCGTATGTAGTCACTTGTTGAA 59.990 40.000 0.00 0.00 35.39 2.69
1380 1410 5.845103 TCCGTATGTAGTCACTTGTTGAAA 58.155 37.500 0.00 0.00 35.39 2.69
1381 1411 6.460781 TCCGTATGTAGTCACTTGTTGAAAT 58.539 36.000 0.00 0.00 35.39 2.17
1382 1412 6.367695 TCCGTATGTAGTCACTTGTTGAAATG 59.632 38.462 0.00 0.00 35.39 2.32
1383 1413 6.147164 CCGTATGTAGTCACTTGTTGAAATGT 59.853 38.462 0.00 0.00 35.39 2.71
1384 1414 7.227461 CGTATGTAGTCACTTGTTGAAATGTC 58.773 38.462 0.00 0.00 35.39 3.06
1385 1415 7.116376 CGTATGTAGTCACTTGTTGAAATGTCT 59.884 37.037 0.00 0.00 35.39 3.41
1386 1416 9.419297 GTATGTAGTCACTTGTTGAAATGTCTA 57.581 33.333 0.00 0.00 35.39 2.59
1387 1417 8.902540 ATGTAGTCACTTGTTGAAATGTCTAA 57.097 30.769 0.00 0.00 35.39 2.10
1388 1418 8.725405 TGTAGTCACTTGTTGAAATGTCTAAA 57.275 30.769 0.00 0.00 35.39 1.85
1389 1419 9.168451 TGTAGTCACTTGTTGAAATGTCTAAAA 57.832 29.630 0.00 0.00 35.39 1.52
1390 1420 9.997482 GTAGTCACTTGTTGAAATGTCTAAAAA 57.003 29.630 0.00 0.00 35.39 1.94
1392 1422 8.956426 AGTCACTTGTTGAAATGTCTAAAAAGA 58.044 29.630 5.49 0.00 35.39 2.52
1393 1423 9.010366 GTCACTTGTTGAAATGTCTAAAAAGAC 57.990 33.333 0.00 0.00 35.39 3.01
1412 1442 8.581253 AAAAGACAAGTATTTAGGAATGGAGG 57.419 34.615 0.00 0.00 0.00 4.30
1413 1443 6.253946 AGACAAGTATTTAGGAATGGAGGG 57.746 41.667 0.00 0.00 0.00 4.30
1414 1444 5.970640 AGACAAGTATTTAGGAATGGAGGGA 59.029 40.000 0.00 0.00 0.00 4.20
1415 1445 6.100424 AGACAAGTATTTAGGAATGGAGGGAG 59.900 42.308 0.00 0.00 0.00 4.30
1416 1446 5.731678 ACAAGTATTTAGGAATGGAGGGAGT 59.268 40.000 0.00 0.00 0.00 3.85
1417 1447 6.906901 ACAAGTATTTAGGAATGGAGGGAGTA 59.093 38.462 0.00 0.00 0.00 2.59
1424 1454 8.814448 TTTAGGAATGGAGGGAGTAATTCTAT 57.186 34.615 0.00 0.00 31.20 1.98
1535 1580 9.817365 CATTTATGCGACAAATAATTCTAGAGG 57.183 33.333 0.00 0.00 0.00 3.69
1536 1581 9.778741 ATTTATGCGACAAATAATTCTAGAGGA 57.221 29.630 0.00 0.00 0.00 3.71
1556 1604 7.770662 AGAGGAAGGGAGTATATGAATACAGA 58.229 38.462 0.00 0.00 40.49 3.41
1572 1620 7.761409 TGAATACAGATTAAAGTGACATTGCC 58.239 34.615 0.00 0.00 0.00 4.52
1649 1701 1.434188 TGACCAAGAAGCTCCTGGAA 58.566 50.000 13.97 1.63 0.00 3.53
2141 2194 3.827898 GCCACGCTCTCCTACGCT 61.828 66.667 0.00 0.00 0.00 5.07
2293 2346 3.243201 GGCAGAGGCAGAAATAATTTCCG 60.243 47.826 0.00 0.00 43.71 4.30
2508 2681 1.726853 GTGTATGTGCACCTGAGTCC 58.273 55.000 15.69 0.00 33.53 3.85
2510 2683 1.001974 TGTATGTGCACCTGAGTCCAC 59.998 52.381 15.69 0.00 0.00 4.02
2642 2815 1.202463 CCAGGTGGTTAGCGATCTGAG 60.202 57.143 3.38 0.00 0.00 3.35
2651 2824 3.069980 GCGATCTGAGGCGTCCAGT 62.070 63.158 3.56 0.00 33.57 4.00
2738 2912 0.686789 CCAGGTGATATGCATCGGGA 59.313 55.000 0.19 0.00 44.75 5.14
2751 2925 2.666317 CATCGGGAATAAAAAGCCCCT 58.334 47.619 0.00 0.00 38.69 4.79
2755 2929 2.623239 CGGGAATAAAAAGCCCCTCCTT 60.623 50.000 0.00 0.00 38.69 3.36
2768 2942 0.677288 CCTCCTTGTACGTGGTGTGA 59.323 55.000 0.00 0.00 0.00 3.58
2884 5685 1.666888 CGCCTGAAAAATCCAGTGTGC 60.667 52.381 0.00 0.00 0.00 4.57
2891 5692 1.242076 AAATCCAGTGTGCTGTGCTC 58.758 50.000 0.00 0.00 41.02 4.26
2905 5706 3.096092 CTGTGCTCCTTCTTCTACCTCT 58.904 50.000 0.00 0.00 0.00 3.69
2913 5714 3.428316 CCTTCTTCTACCTCTGTTCGAGC 60.428 52.174 0.00 0.00 38.49 5.03
2915 5716 2.750166 TCTTCTACCTCTGTTCGAGCTG 59.250 50.000 0.00 0.00 38.49 4.24
2917 5718 1.178276 CTACCTCTGTTCGAGCTGGT 58.822 55.000 13.91 13.91 38.49 4.00
2920 5721 0.318441 CCTCTGTTCGAGCTGGTGAA 59.682 55.000 6.33 0.00 38.49 3.18
2931 6828 2.166254 GAGCTGGTGAAAGAGAGAGAGG 59.834 54.545 0.00 0.00 0.00 3.69
3004 6901 4.457603 TGTGTGTTGCCTCCACATTATAAC 59.542 41.667 3.89 0.00 44.03 1.89
3065 6962 7.317722 ACTAAATAGATGATCCCCACTAACC 57.682 40.000 0.00 0.00 0.00 2.85
3066 6963 7.082972 ACTAAATAGATGATCCCCACTAACCT 58.917 38.462 0.00 0.00 0.00 3.50
3067 6964 8.239478 ACTAAATAGATGATCCCCACTAACCTA 58.761 37.037 0.00 0.00 0.00 3.08
3068 6965 9.273137 CTAAATAGATGATCCCCACTAACCTAT 57.727 37.037 0.00 0.00 0.00 2.57
3069 6966 8.525729 AAATAGATGATCCCCACTAACCTATT 57.474 34.615 0.00 0.00 0.00 1.73
3070 6967 8.525729 AATAGATGATCCCCACTAACCTATTT 57.474 34.615 0.00 0.00 0.00 1.40
3071 6968 6.441088 AGATGATCCCCACTAACCTATTTC 57.559 41.667 0.00 0.00 0.00 2.17
3072 6969 6.153924 AGATGATCCCCACTAACCTATTTCT 58.846 40.000 0.00 0.00 0.00 2.52
3073 6970 5.888982 TGATCCCCACTAACCTATTTCTC 57.111 43.478 0.00 0.00 0.00 2.87
3074 6971 5.538877 TGATCCCCACTAACCTATTTCTCT 58.461 41.667 0.00 0.00 0.00 3.10
3075 6972 6.689561 TGATCCCCACTAACCTATTTCTCTA 58.310 40.000 0.00 0.00 0.00 2.43
3076 6973 6.553852 TGATCCCCACTAACCTATTTCTCTAC 59.446 42.308 0.00 0.00 0.00 2.59
3077 6974 5.845734 TCCCCACTAACCTATTTCTCTACA 58.154 41.667 0.00 0.00 0.00 2.74
3078 6975 5.659971 TCCCCACTAACCTATTTCTCTACAC 59.340 44.000 0.00 0.00 0.00 2.90
3079 6976 5.424252 CCCCACTAACCTATTTCTCTACACA 59.576 44.000 0.00 0.00 0.00 3.72
3080 6977 6.099845 CCCCACTAACCTATTTCTCTACACAT 59.900 42.308 0.00 0.00 0.00 3.21
3081 6978 6.986817 CCCACTAACCTATTTCTCTACACATG 59.013 42.308 0.00 0.00 0.00 3.21
3082 6979 6.480320 CCACTAACCTATTTCTCTACACATGC 59.520 42.308 0.00 0.00 0.00 4.06
3083 6980 7.041721 CACTAACCTATTTCTCTACACATGCA 58.958 38.462 0.00 0.00 0.00 3.96
3084 6981 7.549134 CACTAACCTATTTCTCTACACATGCAA 59.451 37.037 0.00 0.00 0.00 4.08
3085 6982 6.992063 AACCTATTTCTCTACACATGCAAG 57.008 37.500 0.00 0.00 0.00 4.01
3086 6983 4.878397 ACCTATTTCTCTACACATGCAAGC 59.122 41.667 0.00 0.00 0.00 4.01
3087 6984 5.121811 CCTATTTCTCTACACATGCAAGCT 58.878 41.667 0.00 0.00 0.00 3.74
3088 6985 6.127054 ACCTATTTCTCTACACATGCAAGCTA 60.127 38.462 0.00 0.00 0.00 3.32
3089 6986 6.423302 CCTATTTCTCTACACATGCAAGCTAG 59.577 42.308 0.00 0.00 0.00 3.42
3090 6987 5.405935 TTTCTCTACACATGCAAGCTAGA 57.594 39.130 0.00 0.00 0.00 2.43
3091 6988 4.377839 TCTCTACACATGCAAGCTAGAC 57.622 45.455 0.00 0.00 0.00 2.59
3092 6989 3.763897 TCTCTACACATGCAAGCTAGACA 59.236 43.478 0.00 0.00 0.00 3.41
3093 6990 3.849911 TCTACACATGCAAGCTAGACAC 58.150 45.455 0.00 0.00 0.00 3.67
3094 6991 2.549064 ACACATGCAAGCTAGACACA 57.451 45.000 0.00 0.00 0.00 3.72
3095 6992 3.063510 ACACATGCAAGCTAGACACAT 57.936 42.857 0.00 0.00 0.00 3.21
3096 6993 3.005554 ACACATGCAAGCTAGACACATC 58.994 45.455 0.00 0.00 0.00 3.06
3097 6994 3.004862 CACATGCAAGCTAGACACATCA 58.995 45.455 0.00 0.00 0.00 3.07
3098 6995 3.063588 CACATGCAAGCTAGACACATCAG 59.936 47.826 0.00 0.00 0.00 2.90
3099 6996 1.730501 TGCAAGCTAGACACATCAGC 58.269 50.000 0.00 0.00 35.49 4.26
3100 6997 1.002315 TGCAAGCTAGACACATCAGCA 59.998 47.619 0.00 0.00 37.78 4.41
3101 6998 2.079158 GCAAGCTAGACACATCAGCAA 58.921 47.619 0.00 0.00 37.78 3.91
3102 6999 2.095532 GCAAGCTAGACACATCAGCAAG 59.904 50.000 0.00 0.00 37.78 4.01
3103 7000 2.021355 AGCTAGACACATCAGCAAGC 57.979 50.000 0.00 0.00 37.78 4.01
3104 7001 1.554160 AGCTAGACACATCAGCAAGCT 59.446 47.619 0.00 0.00 37.78 3.74
3105 7002 2.027377 AGCTAGACACATCAGCAAGCTT 60.027 45.455 0.00 0.00 37.78 3.74
3106 7003 2.351111 GCTAGACACATCAGCAAGCTTC 59.649 50.000 0.00 0.00 35.35 3.86
3107 7004 2.855209 AGACACATCAGCAAGCTTCT 57.145 45.000 0.00 0.00 0.00 2.85
3108 7005 2.424557 AGACACATCAGCAAGCTTCTG 58.575 47.619 15.63 15.63 0.00 3.02
3109 7006 2.038164 AGACACATCAGCAAGCTTCTGA 59.962 45.455 22.44 22.44 43.79 3.27
3111 7008 3.418995 ACACATCAGCAAGCTTCTGATT 58.581 40.909 25.81 18.51 45.99 2.57
3112 7009 3.190744 ACACATCAGCAAGCTTCTGATTG 59.809 43.478 25.81 25.20 45.99 2.67
3113 7010 2.753452 ACATCAGCAAGCTTCTGATTGG 59.247 45.455 25.81 20.70 45.99 3.16
3115 7012 2.430465 TCAGCAAGCTTCTGATTGGTC 58.570 47.619 18.70 0.00 45.47 4.02
3116 7013 1.471684 CAGCAAGCTTCTGATTGGTCC 59.528 52.381 16.37 0.00 45.47 4.46
3117 7014 1.074405 AGCAAGCTTCTGATTGGTCCA 59.926 47.619 0.00 0.00 45.47 4.02
3118 7015 2.097825 GCAAGCTTCTGATTGGTCCAT 58.902 47.619 0.00 0.00 39.70 3.41
3119 7016 2.159282 GCAAGCTTCTGATTGGTCCATG 60.159 50.000 0.00 0.00 39.70 3.66
3120 7017 3.087031 CAAGCTTCTGATTGGTCCATGT 58.913 45.455 0.00 0.00 36.08 3.21
3121 7018 2.996631 AGCTTCTGATTGGTCCATGTC 58.003 47.619 0.00 0.00 0.00 3.06
3122 7019 2.306805 AGCTTCTGATTGGTCCATGTCA 59.693 45.455 0.00 0.00 0.00 3.58
3123 7020 3.053842 AGCTTCTGATTGGTCCATGTCAT 60.054 43.478 7.67 0.00 0.00 3.06
3124 7021 3.066342 GCTTCTGATTGGTCCATGTCATG 59.934 47.826 5.79 5.79 0.00 3.07
3125 7022 2.646930 TCTGATTGGTCCATGTCATGC 58.353 47.619 7.35 0.00 0.00 4.06
3126 7023 2.026075 TCTGATTGGTCCATGTCATGCA 60.026 45.455 7.35 0.00 0.00 3.96
3127 7024 2.357952 CTGATTGGTCCATGTCATGCAG 59.642 50.000 7.35 3.96 0.00 4.41
3128 7025 1.066605 GATTGGTCCATGTCATGCAGC 59.933 52.381 7.35 2.94 0.00 5.25
3129 7026 0.966875 TTGGTCCATGTCATGCAGCC 60.967 55.000 7.35 8.97 0.00 4.85
3130 7027 1.378911 GGTCCATGTCATGCAGCCA 60.379 57.895 7.35 0.00 0.00 4.75
3131 7028 0.966875 GGTCCATGTCATGCAGCCAA 60.967 55.000 7.35 0.00 0.00 4.52
3132 7029 0.454600 GTCCATGTCATGCAGCCAAG 59.545 55.000 7.35 0.00 0.00 3.61
3133 7030 1.141019 CCATGTCATGCAGCCAAGC 59.859 57.895 7.35 0.00 0.00 4.01
3134 7031 1.320344 CCATGTCATGCAGCCAAGCT 61.320 55.000 7.35 0.00 40.77 3.74
3135 7032 0.530744 CATGTCATGCAGCCAAGCTT 59.469 50.000 0.00 0.00 36.40 3.74
3136 7033 0.815734 ATGTCATGCAGCCAAGCTTC 59.184 50.000 0.00 0.00 36.40 3.86
3137 7034 1.136147 GTCATGCAGCCAAGCTTCG 59.864 57.895 0.00 0.00 36.40 3.79
3138 7035 1.302752 TCATGCAGCCAAGCTTCGT 60.303 52.632 0.00 0.00 36.40 3.85
3139 7036 1.136147 CATGCAGCCAAGCTTCGTC 59.864 57.895 0.00 0.00 36.40 4.20
3140 7037 1.302752 ATGCAGCCAAGCTTCGTCA 60.303 52.632 0.00 0.00 36.40 4.35
3141 7038 0.679002 ATGCAGCCAAGCTTCGTCAT 60.679 50.000 0.00 0.00 36.40 3.06
3142 7039 1.300971 TGCAGCCAAGCTTCGTCATC 61.301 55.000 0.00 0.00 36.40 2.92
3143 7040 1.300971 GCAGCCAAGCTTCGTCATCA 61.301 55.000 0.00 0.00 36.40 3.07
3144 7041 1.376543 CAGCCAAGCTTCGTCATCAT 58.623 50.000 0.00 0.00 36.40 2.45
3145 7042 2.554142 CAGCCAAGCTTCGTCATCATA 58.446 47.619 0.00 0.00 36.40 2.15
3146 7043 2.286294 CAGCCAAGCTTCGTCATCATAC 59.714 50.000 0.00 0.00 36.40 2.39
3147 7044 1.599542 GCCAAGCTTCGTCATCATACC 59.400 52.381 0.00 0.00 0.00 2.73
3148 7045 2.743183 GCCAAGCTTCGTCATCATACCT 60.743 50.000 0.00 0.00 0.00 3.08
3149 7046 3.535561 CCAAGCTTCGTCATCATACCTT 58.464 45.455 0.00 0.00 0.00 3.50
3150 7047 3.941483 CCAAGCTTCGTCATCATACCTTT 59.059 43.478 0.00 0.00 0.00 3.11
3151 7048 4.396166 CCAAGCTTCGTCATCATACCTTTT 59.604 41.667 0.00 0.00 0.00 2.27
3152 7049 5.447818 CCAAGCTTCGTCATCATACCTTTTC 60.448 44.000 0.00 0.00 0.00 2.29
3153 7050 4.192317 AGCTTCGTCATCATACCTTTTCC 58.808 43.478 0.00 0.00 0.00 3.13
3154 7051 4.080863 AGCTTCGTCATCATACCTTTTCCT 60.081 41.667 0.00 0.00 0.00 3.36
3155 7052 5.128827 AGCTTCGTCATCATACCTTTTCCTA 59.871 40.000 0.00 0.00 0.00 2.94
3156 7053 5.992217 GCTTCGTCATCATACCTTTTCCTAT 59.008 40.000 0.00 0.00 0.00 2.57
3157 7054 6.483640 GCTTCGTCATCATACCTTTTCCTATT 59.516 38.462 0.00 0.00 0.00 1.73
3158 7055 7.012421 GCTTCGTCATCATACCTTTTCCTATTT 59.988 37.037 0.00 0.00 0.00 1.40
3159 7056 9.542462 CTTCGTCATCATACCTTTTCCTATTTA 57.458 33.333 0.00 0.00 0.00 1.40
3160 7057 9.893634 TTCGTCATCATACCTTTTCCTATTTAA 57.106 29.630 0.00 0.00 0.00 1.52
3180 7077 6.836577 TTAATTTTCCTTTTTGTTCTGCCG 57.163 33.333 0.00 0.00 0.00 5.69
3181 7078 4.664150 ATTTTCCTTTTTGTTCTGCCGA 57.336 36.364 0.00 0.00 0.00 5.54
3182 7079 3.708563 TTTCCTTTTTGTTCTGCCGAG 57.291 42.857 0.00 0.00 0.00 4.63
3183 7080 0.951558 TCCTTTTTGTTCTGCCGAGC 59.048 50.000 0.00 0.00 0.00 5.03
3184 7081 0.385974 CCTTTTTGTTCTGCCGAGCG 60.386 55.000 0.00 0.00 0.00 5.03
3185 7082 0.586319 CTTTTTGTTCTGCCGAGCGA 59.414 50.000 0.00 0.00 0.00 4.93
3186 7083 0.306533 TTTTTGTTCTGCCGAGCGAC 59.693 50.000 0.00 0.00 0.00 5.19
3187 7084 1.827315 TTTTGTTCTGCCGAGCGACG 61.827 55.000 0.00 0.00 42.18 5.12
3198 7095 2.421168 CGAGCGACGGAAAGAAAATC 57.579 50.000 0.00 0.00 38.46 2.17
3199 7096 1.993370 CGAGCGACGGAAAGAAAATCT 59.007 47.619 0.00 0.00 38.46 2.40
3200 7097 2.028165 CGAGCGACGGAAAGAAAATCTC 59.972 50.000 0.00 0.00 38.46 2.75
3201 7098 2.993899 GAGCGACGGAAAGAAAATCTCA 59.006 45.455 0.00 0.00 0.00 3.27
3202 7099 3.600388 AGCGACGGAAAGAAAATCTCAT 58.400 40.909 0.00 0.00 0.00 2.90
3203 7100 4.003648 AGCGACGGAAAGAAAATCTCATT 58.996 39.130 0.00 0.00 0.00 2.57
3204 7101 5.175859 AGCGACGGAAAGAAAATCTCATTA 58.824 37.500 0.00 0.00 0.00 1.90
3205 7102 5.063564 AGCGACGGAAAGAAAATCTCATTAC 59.936 40.000 0.00 0.00 0.00 1.89
3206 7103 5.726963 GCGACGGAAAGAAAATCTCATTACC 60.727 44.000 0.00 0.00 0.00 2.85
3207 7104 5.581085 CGACGGAAAGAAAATCTCATTACCT 59.419 40.000 0.00 0.00 0.00 3.08
3208 7105 6.092259 CGACGGAAAGAAAATCTCATTACCTT 59.908 38.462 0.00 0.00 0.00 3.50
3209 7106 7.379098 ACGGAAAGAAAATCTCATTACCTTC 57.621 36.000 0.00 0.00 0.00 3.46
3210 7107 6.374613 ACGGAAAGAAAATCTCATTACCTTCC 59.625 38.462 0.00 0.00 0.00 3.46
3211 7108 6.183360 CGGAAAGAAAATCTCATTACCTTCCC 60.183 42.308 0.00 0.00 0.00 3.97
3212 7109 6.892456 GGAAAGAAAATCTCATTACCTTCCCT 59.108 38.462 0.00 0.00 0.00 4.20
3213 7110 7.067615 GGAAAGAAAATCTCATTACCTTCCCTC 59.932 40.741 0.00 0.00 0.00 4.30
3214 7111 6.007485 AGAAAATCTCATTACCTTCCCTCC 57.993 41.667 0.00 0.00 0.00 4.30
3215 7112 5.492524 AGAAAATCTCATTACCTTCCCTCCA 59.507 40.000 0.00 0.00 0.00 3.86
3216 7113 4.779993 AATCTCATTACCTTCCCTCCAC 57.220 45.455 0.00 0.00 0.00 4.02
3217 7114 2.108168 TCTCATTACCTTCCCTCCACG 58.892 52.381 0.00 0.00 0.00 4.94
3218 7115 1.831736 CTCATTACCTTCCCTCCACGT 59.168 52.381 0.00 0.00 0.00 4.49
3219 7116 1.829222 TCATTACCTTCCCTCCACGTC 59.171 52.381 0.00 0.00 0.00 4.34
3220 7117 0.822164 ATTACCTTCCCTCCACGTCG 59.178 55.000 0.00 0.00 0.00 5.12
3221 7118 0.540365 TTACCTTCCCTCCACGTCGT 60.540 55.000 0.00 0.00 0.00 4.34
3222 7119 0.540365 TACCTTCCCTCCACGTCGTT 60.540 55.000 0.00 0.00 0.00 3.85
3223 7120 1.374252 CCTTCCCTCCACGTCGTTG 60.374 63.158 0.00 0.00 0.00 4.10
3224 7121 1.366366 CTTCCCTCCACGTCGTTGT 59.634 57.895 0.00 0.00 0.00 3.32
3225 7122 0.666577 CTTCCCTCCACGTCGTTGTC 60.667 60.000 0.00 0.00 0.00 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
86 88 5.486526 GTTGCAACCCAAATTTCCATCATA 58.513 37.500 19.15 0.00 34.68 2.15
186 188 7.774625 TCATCTGTTTTATACATGCATTCCTCA 59.225 33.333 0.00 0.00 35.85 3.86
208 210 1.541588 GGCACACTTTTCCCAGTCATC 59.458 52.381 0.00 0.00 0.00 2.92
210 212 0.550914 AGGCACACTTTTCCCAGTCA 59.449 50.000 0.00 0.00 0.00 3.41
242 244 3.492482 CCAATTCCTGTGAACCAAACACC 60.492 47.826 0.00 0.00 37.45 4.16
262 264 6.325993 TCAATGGGATTCTTATGTTCTCCA 57.674 37.500 0.00 0.00 0.00 3.86
266 268 8.743714 ACTTTCTTCAATGGGATTCTTATGTTC 58.256 33.333 0.00 0.00 0.00 3.18
289 291 8.143835 CCATCAGGTTTTACTTTGATTTGACTT 58.856 33.333 0.00 0.00 0.00 3.01
372 374 3.128764 GGGGCTCTTTTCAAATTCCTACG 59.871 47.826 0.00 0.00 0.00 3.51
487 490 0.598419 GGCACAGTTCAAGGCTTTGC 60.598 55.000 10.16 10.16 38.50 3.68
491 494 1.529244 GGTGGCACAGTTCAAGGCT 60.529 57.895 20.82 0.00 41.80 4.58
500 503 4.806640 ATTTTTCCTTATGGTGGCACAG 57.193 40.909 20.82 7.86 41.80 3.66
515 518 9.750125 AGGAAACACATAAGAACAGAATTTTTC 57.250 29.630 0.00 0.00 0.00 2.29
518 521 8.912988 TGAAGGAAACACATAAGAACAGAATTT 58.087 29.630 0.00 0.00 0.00 1.82
520 523 7.721399 AGTGAAGGAAACACATAAGAACAGAAT 59.279 33.333 0.00 0.00 40.25 2.40
538 541 9.738832 CCTTTATTTTAAACGAAAAGTGAAGGA 57.261 29.630 15.82 0.00 41.33 3.36
558 561 3.566351 GCCACAATAAGGCCTCCTTTAT 58.434 45.455 5.23 0.00 41.69 1.40
559 562 3.012934 GCCACAATAAGGCCTCCTTTA 57.987 47.619 5.23 0.00 41.69 1.85
577 580 3.068873 ACGAGAATGAGATCCTTAGTGCC 59.931 47.826 0.00 0.00 0.00 5.01
593 596 5.660629 TTTTTATGCACGAAGAACGAGAA 57.339 34.783 0.00 0.00 45.77 2.87
720 737 4.186159 AGGAATAATGTTTCGTACGGTGG 58.814 43.478 16.52 0.00 0.00 4.61
721 738 5.789710 AAGGAATAATGTTTCGTACGGTG 57.210 39.130 16.52 0.00 0.00 4.94
722 739 7.903995 TTAAAGGAATAATGTTTCGTACGGT 57.096 32.000 16.52 0.00 0.00 4.83
835 854 4.988598 ACTTGTCCGGCGTGCTGG 62.989 66.667 13.67 13.67 43.69 4.85
838 857 2.665185 AGAACTTGTCCGGCGTGC 60.665 61.111 6.01 0.00 0.00 5.34
840 859 2.030562 CCAGAACTTGTCCGGCGT 59.969 61.111 6.01 0.00 0.00 5.68
906 925 4.120331 GCACACCATCGCCCAAGC 62.120 66.667 0.00 0.00 0.00 4.01
930 949 5.672819 GCTGTTTAAATAATCTCGTTGCCGT 60.673 40.000 0.00 0.00 35.01 5.68
931 950 4.728608 GCTGTTTAAATAATCTCGTTGCCG 59.271 41.667 0.00 0.00 0.00 5.69
968 987 0.181350 ATGATCCTGCGTTCCTTCCC 59.819 55.000 0.00 0.00 0.00 3.97
1122 1152 3.838271 ACGATGAGGATGGCGCGT 61.838 61.111 8.43 0.00 0.00 6.01
1168 1198 2.126228 GCGGATGACGTTGACGGA 60.126 61.111 8.52 0.00 46.52 4.69
1206 1236 1.601419 CGGGGAAGCCGTAGAAGTCA 61.601 60.000 0.00 0.00 0.00 3.41
1258 1288 5.731591 AGACAAGTATTTAGAAACGGAGGG 58.268 41.667 0.00 0.00 0.00 4.30
1259 1289 7.603024 AGAAAGACAAGTATTTAGAAACGGAGG 59.397 37.037 0.00 0.00 0.00 4.30
1261 1291 9.635520 CTAGAAAGACAAGTATTTAGAAACGGA 57.364 33.333 0.00 0.00 0.00 4.69
1262 1292 8.870879 CCTAGAAAGACAAGTATTTAGAAACGG 58.129 37.037 0.00 0.00 0.00 4.44
1263 1293 8.381387 GCCTAGAAAGACAAGTATTTAGAAACG 58.619 37.037 0.00 0.00 0.00 3.60
1266 1296 9.959721 AATGCCTAGAAAGACAAGTATTTAGAA 57.040 29.630 0.00 0.00 0.00 2.10
1267 1297 9.959721 AAATGCCTAGAAAGACAAGTATTTAGA 57.040 29.630 0.00 0.00 0.00 2.10
1271 1301 8.635765 TTGAAATGCCTAGAAAGACAAGTATT 57.364 30.769 0.00 0.00 0.00 1.89
1272 1302 8.635765 TTTGAAATGCCTAGAAAGACAAGTAT 57.364 30.769 0.00 0.00 0.00 2.12
1275 1305 7.540055 GTCATTTGAAATGCCTAGAAAGACAAG 59.460 37.037 12.86 0.00 0.00 3.16
1276 1306 7.231317 AGTCATTTGAAATGCCTAGAAAGACAA 59.769 33.333 12.86 0.00 0.00 3.18
1278 1308 7.150783 AGTCATTTGAAATGCCTAGAAAGAC 57.849 36.000 12.86 3.23 0.00 3.01
1279 1309 9.113838 GATAGTCATTTGAAATGCCTAGAAAGA 57.886 33.333 13.20 0.00 0.00 2.52
1280 1310 8.066595 CGATAGTCATTTGAAATGCCTAGAAAG 58.933 37.037 13.20 2.89 0.00 2.62
1281 1311 7.467267 GCGATAGTCATTTGAAATGCCTAGAAA 60.467 37.037 13.20 0.00 39.35 2.52
1282 1312 6.017934 GCGATAGTCATTTGAAATGCCTAGAA 60.018 38.462 13.20 0.00 39.35 2.10
1285 1315 5.122519 TGCGATAGTCATTTGAAATGCCTA 58.877 37.500 10.59 10.59 39.35 3.93
1286 1316 3.947196 TGCGATAGTCATTTGAAATGCCT 59.053 39.130 12.86 9.73 39.35 4.75
1287 1317 4.291540 TGCGATAGTCATTTGAAATGCC 57.708 40.909 12.86 1.61 39.35 4.40
1289 1319 6.073369 CCGTATGCGATAGTCATTTGAAATG 58.927 40.000 11.54 11.54 41.33 2.32
1290 1320 5.989168 TCCGTATGCGATAGTCATTTGAAAT 59.011 36.000 4.21 0.00 41.33 2.17
1291 1321 5.353111 TCCGTATGCGATAGTCATTTGAAA 58.647 37.500 4.21 0.00 41.33 2.69
1293 1323 4.577834 TCCGTATGCGATAGTCATTTGA 57.422 40.909 4.21 0.00 41.33 2.69
1294 1324 4.686091 ACATCCGTATGCGATAGTCATTTG 59.314 41.667 4.21 0.00 41.33 2.32
1296 1326 4.521130 ACATCCGTATGCGATAGTCATT 57.479 40.909 4.21 0.00 41.33 2.57
1298 1328 4.981794 CATACATCCGTATGCGATAGTCA 58.018 43.478 4.21 0.00 46.31 3.41
1334 1364 9.400638 CGGAGTAAAATGAGTGAATCTATACTC 57.599 37.037 0.00 0.00 42.77 2.59
1335 1365 8.915036 ACGGAGTAAAATGAGTGAATCTATACT 58.085 33.333 0.00 0.00 41.94 2.12
1353 1383 7.255555 TTCAACAAGTGACTACATACGGAGTAA 60.256 37.037 0.00 0.00 41.03 2.24
1354 1384 6.207221 TTCAACAAGTGACTACATACGGAGTA 59.793 38.462 0.00 0.00 41.66 2.59
1355 1385 5.010314 TTCAACAAGTGACTACATACGGAGT 59.990 40.000 0.00 0.00 39.84 3.85
1356 1386 5.055642 TCAACAAGTGACTACATACGGAG 57.944 43.478 0.00 0.00 0.00 4.63
1357 1387 5.456548 TTCAACAAGTGACTACATACGGA 57.543 39.130 0.00 0.00 35.39 4.69
1358 1388 6.147164 ACATTTCAACAAGTGACTACATACGG 59.853 38.462 0.00 0.00 35.39 4.02
1359 1389 7.116376 AGACATTTCAACAAGTGACTACATACG 59.884 37.037 0.00 0.00 35.39 3.06
1360 1390 8.311650 AGACATTTCAACAAGTGACTACATAC 57.688 34.615 0.00 0.00 35.39 2.39
1361 1391 9.990360 TTAGACATTTCAACAAGTGACTACATA 57.010 29.630 0.00 0.00 35.39 2.29
1362 1392 8.902540 TTAGACATTTCAACAAGTGACTACAT 57.097 30.769 0.00 0.00 35.39 2.29
1363 1393 8.725405 TTTAGACATTTCAACAAGTGACTACA 57.275 30.769 0.00 0.00 35.39 2.74
1364 1394 9.997482 TTTTTAGACATTTCAACAAGTGACTAC 57.003 29.630 0.00 0.00 35.39 2.73
1366 1396 8.956426 TCTTTTTAGACATTTCAACAAGTGACT 58.044 29.630 0.00 0.00 35.39 3.41
1367 1397 9.010366 GTCTTTTTAGACATTTCAACAAGTGAC 57.990 33.333 0.00 0.00 38.59 3.67
1368 1398 8.735315 TGTCTTTTTAGACATTTCAACAAGTGA 58.265 29.630 3.99 0.00 43.09 3.41
1369 1399 8.909708 TGTCTTTTTAGACATTTCAACAAGTG 57.090 30.769 3.99 0.00 43.09 3.16
1370 1400 9.573133 CTTGTCTTTTTAGACATTTCAACAAGT 57.427 29.630 8.65 0.00 46.61 3.16
1371 1401 9.573133 ACTTGTCTTTTTAGACATTTCAACAAG 57.427 29.630 8.65 0.00 46.61 3.16
1386 1416 9.025041 CCTCCATTCCTAAATACTTGTCTTTTT 57.975 33.333 0.00 0.00 0.00 1.94
1387 1417 7.615757 CCCTCCATTCCTAAATACTTGTCTTTT 59.384 37.037 0.00 0.00 0.00 2.27
1388 1418 7.036863 TCCCTCCATTCCTAAATACTTGTCTTT 60.037 37.037 0.00 0.00 0.00 2.52
1389 1419 6.447084 TCCCTCCATTCCTAAATACTTGTCTT 59.553 38.462 0.00 0.00 0.00 3.01
1390 1420 5.970640 TCCCTCCATTCCTAAATACTTGTCT 59.029 40.000 0.00 0.00 0.00 3.41
1391 1421 6.126739 ACTCCCTCCATTCCTAAATACTTGTC 60.127 42.308 0.00 0.00 0.00 3.18
1392 1422 5.731678 ACTCCCTCCATTCCTAAATACTTGT 59.268 40.000 0.00 0.00 0.00 3.16
1393 1423 6.253946 ACTCCCTCCATTCCTAAATACTTG 57.746 41.667 0.00 0.00 0.00 3.16
1394 1424 8.582891 ATTACTCCCTCCATTCCTAAATACTT 57.417 34.615 0.00 0.00 0.00 2.24
1395 1425 8.582891 AATTACTCCCTCCATTCCTAAATACT 57.417 34.615 0.00 0.00 0.00 2.12
1396 1426 8.661345 AGAATTACTCCCTCCATTCCTAAATAC 58.339 37.037 0.00 0.00 0.00 1.89
1397 1427 8.814448 AGAATTACTCCCTCCATTCCTAAATA 57.186 34.615 0.00 0.00 0.00 1.40
1398 1428 7.713704 AGAATTACTCCCTCCATTCCTAAAT 57.286 36.000 0.00 0.00 0.00 1.40
1399 1429 8.814448 ATAGAATTACTCCCTCCATTCCTAAA 57.186 34.615 0.00 0.00 0.00 1.85
1401 1431 9.716556 GATATAGAATTACTCCCTCCATTCCTA 57.283 37.037 0.00 0.00 0.00 2.94
1402 1432 7.625682 GGATATAGAATTACTCCCTCCATTCCT 59.374 40.741 0.00 0.00 0.00 3.36
1403 1433 7.147461 GGGATATAGAATTACTCCCTCCATTCC 60.147 44.444 0.00 0.00 42.00 3.01
1404 1434 7.797062 GGGATATAGAATTACTCCCTCCATTC 58.203 42.308 0.00 0.00 42.00 2.67
1405 1435 7.757242 GGGATATAGAATTACTCCCTCCATT 57.243 40.000 0.00 0.00 42.00 3.16
1531 1576 7.770662 TCTGTATTCATATACTCCCTTCCTCT 58.229 38.462 0.00 0.00 37.97 3.69
1556 1604 4.342092 GCATAGGGGCAATGTCACTTTAAT 59.658 41.667 0.00 0.00 0.00 1.40
1567 1615 3.530928 ACATATGTGCATAGGGGCAAT 57.469 42.857 7.78 0.00 46.93 3.56
1572 1620 4.248859 GTCAGCTACATATGTGCATAGGG 58.751 47.826 18.81 8.40 30.03 3.53
1624 1676 1.674962 GGAGCTTCTTGGTCATCATGC 59.325 52.381 0.00 0.00 44.40 4.06
1630 1682 1.349026 CTTCCAGGAGCTTCTTGGTCA 59.651 52.381 11.99 3.16 43.40 4.02
1829 1881 4.050934 ACGATGAGCACGCCGTCA 62.051 61.111 0.00 0.00 0.00 4.35
1988 2041 1.433879 CCTCTCCTCGTACCGCTTG 59.566 63.158 0.00 0.00 0.00 4.01
2036 2089 1.542187 GCGGGTAGAAGTGGTCTGGT 61.542 60.000 0.00 0.00 37.12 4.00
2141 2194 2.060370 GGTGGTGAACCGGTAGGAA 58.940 57.895 8.00 0.00 39.81 3.36
2293 2346 3.932710 TCTTCATAAACTCCGTCACATGC 59.067 43.478 0.00 0.00 0.00 4.06
2377 2430 9.857656 ACTCAATCATGATTATCCTAACACATT 57.142 29.630 20.32 0.00 34.37 2.71
2378 2431 9.499479 GACTCAATCATGATTATCCTAACACAT 57.501 33.333 20.32 0.00 34.37 3.21
2379 2432 8.485392 TGACTCAATCATGATTATCCTAACACA 58.515 33.333 20.32 8.67 34.37 3.72
2380 2433 8.893219 TGACTCAATCATGATTATCCTAACAC 57.107 34.615 20.32 6.56 34.37 3.32
2508 2681 0.469917 CCCTAGTGCCCTACATGGTG 59.530 60.000 0.00 0.00 0.00 4.17
2510 2683 1.056700 AGCCCTAGTGCCCTACATGG 61.057 60.000 0.00 0.00 0.00 3.66
2557 2730 4.828925 GCCTGAGGACTCGCCAGC 62.829 72.222 0.65 0.00 40.02 4.85
2562 2735 4.803426 GCACCGCCTGAGGACTCG 62.803 72.222 0.65 0.00 34.73 4.18
2642 2815 1.069227 CAAGCTAACAAACTGGACGCC 60.069 52.381 0.00 0.00 0.00 5.68
2651 2824 3.486383 AGCTGGCTAACAAGCTAACAAA 58.514 40.909 0.00 0.00 33.67 2.83
2669 2842 2.109229 ATCCAGCCACCACTATAGCT 57.891 50.000 0.00 0.00 35.52 3.32
2738 2912 4.014406 CGTACAAGGAGGGGCTTTTTATT 58.986 43.478 0.00 0.00 0.00 1.40
2751 2925 0.032952 GCTCACACCACGTACAAGGA 59.967 55.000 7.53 0.00 0.00 3.36
2755 2929 3.539842 TGGCTCACACCACGTACA 58.460 55.556 0.00 0.00 33.75 2.90
2768 2942 0.471617 ACTCAGCTCAAACTGTGGCT 59.528 50.000 0.00 0.00 38.84 4.75
2884 5685 3.096092 AGAGGTAGAAGAAGGAGCACAG 58.904 50.000 0.00 0.00 0.00 3.66
2891 5692 3.428316 GCTCGAACAGAGGTAGAAGAAGG 60.428 52.174 0.00 0.00 46.91 3.46
2905 5706 1.686587 TCTCTTTCACCAGCTCGAACA 59.313 47.619 0.00 0.00 0.00 3.18
2913 5714 1.830477 CCCCTCTCTCTCTTTCACCAG 59.170 57.143 0.00 0.00 0.00 4.00
2915 5716 1.945580 ACCCCTCTCTCTCTTTCACC 58.054 55.000 0.00 0.00 0.00 4.02
2917 5718 2.171840 CGAACCCCTCTCTCTCTTTCA 58.828 52.381 0.00 0.00 0.00 2.69
2920 5721 1.617533 GGACGAACCCCTCTCTCTCTT 60.618 57.143 0.00 0.00 0.00 2.85
2964 6861 4.248859 CACACAAACATTTTGTTGGGACA 58.751 39.130 1.49 0.00 40.14 4.02
2965 6862 4.249661 ACACACAAACATTTTGTTGGGAC 58.750 39.130 1.49 0.00 40.14 4.46
2966 6863 4.543590 ACACACAAACATTTTGTTGGGA 57.456 36.364 1.49 0.00 40.14 4.37
2967 6864 4.671250 GCAACACACAAACATTTTGTTGGG 60.671 41.667 16.43 9.48 44.68 4.12
2968 6865 4.401714 GCAACACACAAACATTTTGTTGG 58.598 39.130 16.43 3.31 44.68 3.77
2969 6866 4.153835 AGGCAACACACAAACATTTTGTTG 59.846 37.500 12.78 12.78 46.40 3.33
2970 6867 4.322567 AGGCAACACACAAACATTTTGTT 58.677 34.783 1.49 0.00 40.57 2.83
2971 6868 3.932089 GAGGCAACACACAAACATTTTGT 59.068 39.130 0.00 0.00 41.41 2.83
2972 6869 3.309410 GGAGGCAACACACAAACATTTTG 59.691 43.478 0.00 0.00 41.41 2.44
3004 6901 7.747888 TGTTAGACATGATTGATGTTAAACCG 58.252 34.615 0.00 0.00 45.90 4.44
3039 6936 8.877195 GGTTAGTGGGGATCATCTATTTAGTTA 58.123 37.037 0.00 0.00 0.00 2.24
3040 6937 7.572861 AGGTTAGTGGGGATCATCTATTTAGTT 59.427 37.037 0.00 0.00 0.00 2.24
3041 6938 7.082972 AGGTTAGTGGGGATCATCTATTTAGT 58.917 38.462 0.00 0.00 0.00 2.24
3042 6939 7.560796 AGGTTAGTGGGGATCATCTATTTAG 57.439 40.000 0.00 0.00 0.00 1.85
3043 6940 9.629649 AATAGGTTAGTGGGGATCATCTATTTA 57.370 33.333 0.00 0.00 0.00 1.40
3044 6941 8.525729 AATAGGTTAGTGGGGATCATCTATTT 57.474 34.615 0.00 0.00 0.00 1.40
3045 6942 8.525729 AAATAGGTTAGTGGGGATCATCTATT 57.474 34.615 0.00 0.00 0.00 1.73
3046 6943 7.964293 AGAAATAGGTTAGTGGGGATCATCTAT 59.036 37.037 0.00 0.00 0.00 1.98
3047 6944 7.313731 AGAAATAGGTTAGTGGGGATCATCTA 58.686 38.462 0.00 0.00 0.00 1.98
3048 6945 6.153924 AGAAATAGGTTAGTGGGGATCATCT 58.846 40.000 0.00 0.00 0.00 2.90
3049 6946 6.271159 AGAGAAATAGGTTAGTGGGGATCATC 59.729 42.308 0.00 0.00 0.00 2.92
3050 6947 6.153924 AGAGAAATAGGTTAGTGGGGATCAT 58.846 40.000 0.00 0.00 0.00 2.45
3051 6948 5.538877 AGAGAAATAGGTTAGTGGGGATCA 58.461 41.667 0.00 0.00 0.00 2.92
3052 6949 6.553852 TGTAGAGAAATAGGTTAGTGGGGATC 59.446 42.308 0.00 0.00 0.00 3.36
3053 6950 6.326843 GTGTAGAGAAATAGGTTAGTGGGGAT 59.673 42.308 0.00 0.00 0.00 3.85
3054 6951 5.659971 GTGTAGAGAAATAGGTTAGTGGGGA 59.340 44.000 0.00 0.00 0.00 4.81
3055 6952 5.424252 TGTGTAGAGAAATAGGTTAGTGGGG 59.576 44.000 0.00 0.00 0.00 4.96
3056 6953 6.540438 TGTGTAGAGAAATAGGTTAGTGGG 57.460 41.667 0.00 0.00 0.00 4.61
3057 6954 6.480320 GCATGTGTAGAGAAATAGGTTAGTGG 59.520 42.308 0.00 0.00 0.00 4.00
3058 6955 7.041721 TGCATGTGTAGAGAAATAGGTTAGTG 58.958 38.462 0.00 0.00 0.00 2.74
3059 6956 7.182817 TGCATGTGTAGAGAAATAGGTTAGT 57.817 36.000 0.00 0.00 0.00 2.24
3060 6957 7.254590 GCTTGCATGTGTAGAGAAATAGGTTAG 60.255 40.741 1.14 0.00 0.00 2.34
3061 6958 6.538742 GCTTGCATGTGTAGAGAAATAGGTTA 59.461 38.462 1.14 0.00 0.00 2.85
3062 6959 5.355350 GCTTGCATGTGTAGAGAAATAGGTT 59.645 40.000 1.14 0.00 0.00 3.50
3063 6960 4.878397 GCTTGCATGTGTAGAGAAATAGGT 59.122 41.667 1.14 0.00 0.00 3.08
3064 6961 5.121811 AGCTTGCATGTGTAGAGAAATAGG 58.878 41.667 1.14 0.00 0.00 2.57
3065 6962 7.168972 GTCTAGCTTGCATGTGTAGAGAAATAG 59.831 40.741 11.61 0.00 0.00 1.73
3066 6963 6.980978 GTCTAGCTTGCATGTGTAGAGAAATA 59.019 38.462 11.61 0.00 0.00 1.40
3067 6964 5.814705 GTCTAGCTTGCATGTGTAGAGAAAT 59.185 40.000 11.61 0.00 0.00 2.17
3068 6965 5.171476 GTCTAGCTTGCATGTGTAGAGAAA 58.829 41.667 11.61 0.00 0.00 2.52
3069 6966 4.220602 TGTCTAGCTTGCATGTGTAGAGAA 59.779 41.667 11.61 4.44 0.00 2.87
3070 6967 3.763897 TGTCTAGCTTGCATGTGTAGAGA 59.236 43.478 11.61 9.17 0.00 3.10
3071 6968 3.862267 GTGTCTAGCTTGCATGTGTAGAG 59.138 47.826 11.61 0.00 0.00 2.43
3072 6969 3.258123 TGTGTCTAGCTTGCATGTGTAGA 59.742 43.478 0.00 5.77 0.00 2.59
3073 6970 3.588955 TGTGTCTAGCTTGCATGTGTAG 58.411 45.455 0.00 3.67 0.00 2.74
3074 6971 3.676291 TGTGTCTAGCTTGCATGTGTA 57.324 42.857 0.00 0.00 0.00 2.90
3075 6972 2.549064 TGTGTCTAGCTTGCATGTGT 57.451 45.000 0.00 0.00 0.00 3.72
3076 6973 3.004862 TGATGTGTCTAGCTTGCATGTG 58.995 45.455 0.00 0.00 0.00 3.21
3077 6974 3.268330 CTGATGTGTCTAGCTTGCATGT 58.732 45.455 0.00 0.00 0.00 3.21
3078 6975 2.031807 GCTGATGTGTCTAGCTTGCATG 59.968 50.000 0.00 0.00 34.70 4.06
3079 6976 2.286872 GCTGATGTGTCTAGCTTGCAT 58.713 47.619 0.00 0.00 34.70 3.96
3080 6977 1.002315 TGCTGATGTGTCTAGCTTGCA 59.998 47.619 0.00 0.00 38.25 4.08
3081 6978 1.730501 TGCTGATGTGTCTAGCTTGC 58.269 50.000 0.00 0.00 38.25 4.01
3082 6979 2.095532 GCTTGCTGATGTGTCTAGCTTG 59.904 50.000 0.00 0.00 38.25 4.01
3083 6980 2.027377 AGCTTGCTGATGTGTCTAGCTT 60.027 45.455 0.00 0.00 38.25 3.74
3084 6981 1.554160 AGCTTGCTGATGTGTCTAGCT 59.446 47.619 0.00 0.00 38.25 3.32
3085 6982 2.021355 AGCTTGCTGATGTGTCTAGC 57.979 50.000 0.00 0.00 37.93 3.42
3086 6983 3.617706 CAGAAGCTTGCTGATGTGTCTAG 59.382 47.826 2.10 0.00 35.39 2.43
3087 6984 3.259123 TCAGAAGCTTGCTGATGTGTCTA 59.741 43.478 18.70 1.95 37.46 2.59
3088 6985 2.038164 TCAGAAGCTTGCTGATGTGTCT 59.962 45.455 18.70 0.00 37.46 3.41
3089 6986 2.420642 TCAGAAGCTTGCTGATGTGTC 58.579 47.619 18.70 0.00 37.46 3.67
3090 6987 2.556144 TCAGAAGCTTGCTGATGTGT 57.444 45.000 18.70 0.00 37.46 3.72
3095 6992 2.430465 GACCAATCAGAAGCTTGCTGA 58.570 47.619 22.44 22.44 45.52 4.26
3096 6993 1.471684 GGACCAATCAGAAGCTTGCTG 59.528 52.381 2.10 11.43 34.71 4.41
3097 6994 1.074405 TGGACCAATCAGAAGCTTGCT 59.926 47.619 2.10 0.00 0.00 3.91
3098 6995 1.538047 TGGACCAATCAGAAGCTTGC 58.462 50.000 2.10 0.00 0.00 4.01
3099 6996 3.087031 ACATGGACCAATCAGAAGCTTG 58.913 45.455 2.10 0.00 0.00 4.01
3100 6997 3.245016 TGACATGGACCAATCAGAAGCTT 60.245 43.478 0.00 0.00 0.00 3.74
3101 6998 2.306805 TGACATGGACCAATCAGAAGCT 59.693 45.455 0.00 0.00 0.00 3.74
3102 6999 2.715046 TGACATGGACCAATCAGAAGC 58.285 47.619 0.00 0.00 0.00 3.86
3103 7000 3.066342 GCATGACATGGACCAATCAGAAG 59.934 47.826 17.03 9.78 0.00 2.85
3104 7001 3.018856 GCATGACATGGACCAATCAGAA 58.981 45.455 17.03 0.00 0.00 3.02
3105 7002 2.026075 TGCATGACATGGACCAATCAGA 60.026 45.455 17.03 2.51 0.00 3.27
3106 7003 2.357952 CTGCATGACATGGACCAATCAG 59.642 50.000 17.03 9.52 0.00 2.90
3107 7004 2.371306 CTGCATGACATGGACCAATCA 58.629 47.619 17.03 12.82 0.00 2.57
3108 7005 1.066605 GCTGCATGACATGGACCAATC 59.933 52.381 17.03 0.00 0.00 2.67
3109 7006 1.108776 GCTGCATGACATGGACCAAT 58.891 50.000 17.03 0.00 0.00 3.16
3110 7007 0.966875 GGCTGCATGACATGGACCAA 60.967 55.000 17.03 0.00 0.00 3.67
3111 7008 1.378911 GGCTGCATGACATGGACCA 60.379 57.895 17.03 0.00 0.00 4.02
3112 7009 0.966875 TTGGCTGCATGACATGGACC 60.967 55.000 17.03 16.62 31.11 4.46
3113 7010 0.454600 CTTGGCTGCATGACATGGAC 59.545 55.000 17.03 8.83 31.11 4.02
3114 7011 1.317431 GCTTGGCTGCATGACATGGA 61.317 55.000 17.03 13.35 31.11 3.41
3115 7012 1.141019 GCTTGGCTGCATGACATGG 59.859 57.895 17.03 2.63 31.11 3.66
3116 7013 0.530744 AAGCTTGGCTGCATGACATG 59.469 50.000 11.27 11.27 39.62 3.21
3117 7014 0.815734 GAAGCTTGGCTGCATGACAT 59.184 50.000 2.10 0.00 39.62 3.06
3118 7015 1.579964 CGAAGCTTGGCTGCATGACA 61.580 55.000 2.10 0.00 39.62 3.58
3119 7016 1.136147 CGAAGCTTGGCTGCATGAC 59.864 57.895 2.10 0.00 39.62 3.06
3120 7017 1.300971 GACGAAGCTTGGCTGCATGA 61.301 55.000 2.10 0.00 39.62 3.07
3121 7018 1.136147 GACGAAGCTTGGCTGCATG 59.864 57.895 2.10 0.00 39.62 4.06
3122 7019 0.679002 ATGACGAAGCTTGGCTGCAT 60.679 50.000 2.10 4.97 39.62 3.96
3123 7020 1.300971 GATGACGAAGCTTGGCTGCA 61.301 55.000 2.10 2.48 39.62 4.41
3124 7021 1.300971 TGATGACGAAGCTTGGCTGC 61.301 55.000 2.10 0.00 39.62 5.25
3125 7022 1.376543 ATGATGACGAAGCTTGGCTG 58.623 50.000 2.10 0.00 39.62 4.85
3126 7023 2.555199 GTATGATGACGAAGCTTGGCT 58.445 47.619 2.10 0.00 42.56 4.75
3127 7024 1.599542 GGTATGATGACGAAGCTTGGC 59.400 52.381 2.10 0.00 0.00 4.52
3128 7025 3.185246 AGGTATGATGACGAAGCTTGG 57.815 47.619 2.10 4.94 0.00 3.61
3129 7026 5.447818 GGAAAAGGTATGATGACGAAGCTTG 60.448 44.000 2.10 0.00 30.63 4.01
3130 7027 4.636206 GGAAAAGGTATGATGACGAAGCTT 59.364 41.667 0.00 0.00 0.00 3.74
3131 7028 4.080863 AGGAAAAGGTATGATGACGAAGCT 60.081 41.667 0.00 0.00 0.00 3.74
3132 7029 4.192317 AGGAAAAGGTATGATGACGAAGC 58.808 43.478 0.00 0.00 0.00 3.86
3133 7030 8.438676 AAATAGGAAAAGGTATGATGACGAAG 57.561 34.615 0.00 0.00 0.00 3.79
3134 7031 9.893634 TTAAATAGGAAAAGGTATGATGACGAA 57.106 29.630 0.00 0.00 0.00 3.85
3154 7051 8.983724 CGGCAGAACAAAAAGGAAAATTAAATA 58.016 29.630 0.00 0.00 0.00 1.40
3155 7052 7.713073 TCGGCAGAACAAAAAGGAAAATTAAAT 59.287 29.630 0.00 0.00 0.00 1.40
3156 7053 7.042335 TCGGCAGAACAAAAAGGAAAATTAAA 58.958 30.769 0.00 0.00 0.00 1.52
3157 7054 6.574350 TCGGCAGAACAAAAAGGAAAATTAA 58.426 32.000 0.00 0.00 0.00 1.40
3158 7055 6.150396 TCGGCAGAACAAAAAGGAAAATTA 57.850 33.333 0.00 0.00 0.00 1.40
3159 7056 5.017294 TCGGCAGAACAAAAAGGAAAATT 57.983 34.783 0.00 0.00 0.00 1.82
3160 7057 4.620982 CTCGGCAGAACAAAAAGGAAAAT 58.379 39.130 0.00 0.00 0.00 1.82
3161 7058 3.736740 GCTCGGCAGAACAAAAAGGAAAA 60.737 43.478 0.00 0.00 0.00 2.29
3162 7059 2.223711 GCTCGGCAGAACAAAAAGGAAA 60.224 45.455 0.00 0.00 0.00 3.13
3163 7060 1.336755 GCTCGGCAGAACAAAAAGGAA 59.663 47.619 0.00 0.00 0.00 3.36
3164 7061 0.951558 GCTCGGCAGAACAAAAAGGA 59.048 50.000 0.00 0.00 0.00 3.36
3165 7062 0.385974 CGCTCGGCAGAACAAAAAGG 60.386 55.000 0.00 0.00 0.00 3.11
3166 7063 0.586319 TCGCTCGGCAGAACAAAAAG 59.414 50.000 0.00 0.00 0.00 2.27
3167 7064 0.306533 GTCGCTCGGCAGAACAAAAA 59.693 50.000 0.00 0.00 0.00 1.94
3168 7065 1.827315 CGTCGCTCGGCAGAACAAAA 61.827 55.000 0.00 0.00 35.71 2.44
3169 7066 2.307309 CGTCGCTCGGCAGAACAAA 61.307 57.895 0.00 0.00 35.71 2.83
3170 7067 2.733218 CGTCGCTCGGCAGAACAA 60.733 61.111 0.00 0.00 35.71 2.83
3179 7076 1.993370 AGATTTTCTTTCCGTCGCTCG 59.007 47.619 0.00 0.00 39.52 5.03
3180 7077 2.993899 TGAGATTTTCTTTCCGTCGCTC 59.006 45.455 0.00 0.00 0.00 5.03
3181 7078 3.040147 TGAGATTTTCTTTCCGTCGCT 57.960 42.857 0.00 0.00 0.00 4.93
3182 7079 4.342352 AATGAGATTTTCTTTCCGTCGC 57.658 40.909 0.00 0.00 0.00 5.19
3183 7080 5.581085 AGGTAATGAGATTTTCTTTCCGTCG 59.419 40.000 0.00 0.00 0.00 5.12
3184 7081 6.986904 AGGTAATGAGATTTTCTTTCCGTC 57.013 37.500 0.00 0.00 0.00 4.79
3185 7082 6.374613 GGAAGGTAATGAGATTTTCTTTCCGT 59.625 38.462 0.00 0.00 29.53 4.69
3186 7083 6.183360 GGGAAGGTAATGAGATTTTCTTTCCG 60.183 42.308 0.00 0.00 34.88 4.30
3187 7084 6.892456 AGGGAAGGTAATGAGATTTTCTTTCC 59.108 38.462 0.00 0.00 34.15 3.13
3188 7085 7.067615 GGAGGGAAGGTAATGAGATTTTCTTTC 59.932 40.741 0.00 0.00 0.00 2.62
3189 7086 6.892456 GGAGGGAAGGTAATGAGATTTTCTTT 59.108 38.462 0.00 0.00 0.00 2.52
3190 7087 6.011628 TGGAGGGAAGGTAATGAGATTTTCTT 60.012 38.462 0.00 0.00 0.00 2.52
3191 7088 5.492524 TGGAGGGAAGGTAATGAGATTTTCT 59.507 40.000 0.00 0.00 0.00 2.52
3192 7089 5.590663 GTGGAGGGAAGGTAATGAGATTTTC 59.409 44.000 0.00 0.00 0.00 2.29
3193 7090 5.510430 GTGGAGGGAAGGTAATGAGATTTT 58.490 41.667 0.00 0.00 0.00 1.82
3194 7091 4.384208 CGTGGAGGGAAGGTAATGAGATTT 60.384 45.833 0.00 0.00 0.00 2.17
3195 7092 3.134804 CGTGGAGGGAAGGTAATGAGATT 59.865 47.826 0.00 0.00 0.00 2.40
3196 7093 2.700897 CGTGGAGGGAAGGTAATGAGAT 59.299 50.000 0.00 0.00 0.00 2.75
3197 7094 2.108168 CGTGGAGGGAAGGTAATGAGA 58.892 52.381 0.00 0.00 0.00 3.27
3198 7095 1.831736 ACGTGGAGGGAAGGTAATGAG 59.168 52.381 0.00 0.00 0.00 2.90
3199 7096 1.829222 GACGTGGAGGGAAGGTAATGA 59.171 52.381 0.00 0.00 0.00 2.57
3200 7097 1.470979 CGACGTGGAGGGAAGGTAATG 60.471 57.143 0.00 0.00 0.00 1.90
3201 7098 0.822164 CGACGTGGAGGGAAGGTAAT 59.178 55.000 0.00 0.00 0.00 1.89
3202 7099 0.540365 ACGACGTGGAGGGAAGGTAA 60.540 55.000 3.97 0.00 0.00 2.85
3203 7100 0.540365 AACGACGTGGAGGGAAGGTA 60.540 55.000 3.97 0.00 0.00 3.08
3204 7101 1.835712 AACGACGTGGAGGGAAGGT 60.836 57.895 3.97 0.00 0.00 3.50
3205 7102 1.374252 CAACGACGTGGAGGGAAGG 60.374 63.158 3.97 0.00 0.00 3.46
3206 7103 0.666577 GACAACGACGTGGAGGGAAG 60.667 60.000 9.92 0.00 0.00 3.46
3207 7104 1.364901 GACAACGACGTGGAGGGAA 59.635 57.895 9.92 0.00 0.00 3.97
3208 7105 3.045142 GACAACGACGTGGAGGGA 58.955 61.111 9.92 0.00 0.00 4.20


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.