Multiple sequence alignment - TraesCS6D01G014900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G014900 chr6D 100.000 8420 0 0 1 8420 6262284 6253865 0.000000e+00 15549
1 TraesCS6D01G014900 chr6D 86.099 2007 229 17 5625 7592 6117274 6115279 0.000000e+00 2115
2 TraesCS6D01G014900 chr6D 84.789 1065 151 9 2790 3849 6132936 6131878 0.000000e+00 1059
3 TraesCS6D01G014900 chr6D 84.799 1046 126 11 4598 5617 6118581 6117543 0.000000e+00 1020
4 TraesCS6D01G014900 chr6D 87.138 863 92 16 7569 8420 6115256 6114402 0.000000e+00 961
5 TraesCS6D01G014900 chr6D 84.785 861 105 8 1945 2789 6133817 6132967 0.000000e+00 841
6 TraesCS6D01G014900 chr6D 90.116 516 48 3 1432 1946 6134424 6133911 0.000000e+00 667
7 TraesCS6D01G014900 chr6D 83.425 730 79 19 60 783 6135848 6135155 2.560000e-179 640
8 TraesCS6D01G014900 chr6A 83.485 2858 409 33 2790 5617 5503205 5500381 0.000000e+00 2604
9 TraesCS6D01G014900 chr6A 93.459 1483 86 7 509 1989 5558844 5557371 0.000000e+00 2191
10 TraesCS6D01G014900 chr6A 85.296 2013 237 26 5625 7592 5500107 5498109 0.000000e+00 2023
11 TraesCS6D01G014900 chr6A 84.784 2011 249 25 5625 7592 5474746 5472750 0.000000e+00 1965
12 TraesCS6D01G014900 chr6A 82.950 1871 269 19 3773 5617 5476861 5475015 0.000000e+00 1642
13 TraesCS6D01G014900 chr6A 86.109 1375 167 15 1433 2789 5480368 5479000 0.000000e+00 1459
14 TraesCS6D01G014900 chr6A 84.380 1370 159 29 1433 2789 5504563 5503236 0.000000e+00 1293
15 TraesCS6D01G014900 chr6A 79.755 1793 291 42 5833 7592 5552241 5550488 0.000000e+00 1234
16 TraesCS6D01G014900 chr6A 86.643 846 89 17 7585 8420 5472710 5471879 0.000000e+00 915
17 TraesCS6D01G014900 chr6A 86.650 779 79 15 7643 8420 5548805 5548051 0.000000e+00 839
18 TraesCS6D01G014900 chr6A 85.571 797 88 16 7585 8372 5498069 5497291 0.000000e+00 809
19 TraesCS6D01G014900 chr6A 81.881 872 97 29 553 1405 5481295 5480466 0.000000e+00 678
20 TraesCS6D01G014900 chr6A 83.280 628 51 19 188 802 5505828 5505242 5.790000e-146 529
21 TraesCS6D01G014900 chr6A 79.426 418 45 16 167 568 5481698 5481306 3.020000e-64 257
22 TraesCS6D01G014900 chr6A 80.208 192 27 9 2136 2320 5555597 5555410 5.300000e-27 134
23 TraesCS6D01G014900 chr6B 89.463 1993 146 18 831 2789 11526056 11524094 0.000000e+00 2459
24 TraesCS6D01G014900 chr6B 86.143 1999 234 26 2790 4752 11524063 11522072 0.000000e+00 2117
25 TraesCS6D01G014900 chr6B 83.989 2161 310 23 2790 4920 11419708 11417554 0.000000e+00 2041
26 TraesCS6D01G014900 chr6B 89.588 1239 121 5 6359 7592 11521066 11519831 0.000000e+00 1567
27 TraesCS6D01G014900 chr6B 86.538 1404 160 17 6201 7592 11416071 11414685 0.000000e+00 1519
28 TraesCS6D01G014900 chr6B 82.810 1466 156 39 1 1404 11429799 11428368 0.000000e+00 1223
29 TraesCS6D01G014900 chr6B 91.875 800 47 10 1 783 11526849 11526051 0.000000e+00 1101
30 TraesCS6D01G014900 chr6B 88.702 894 91 8 1432 2321 11428271 11427384 0.000000e+00 1083
31 TraesCS6D01G014900 chr6B 85.614 1001 110 12 4963 5932 11522066 11521069 0.000000e+00 1020
32 TraesCS6D01G014900 chr6B 88.319 839 66 24 7593 8420 11519784 11518967 0.000000e+00 977
33 TraesCS6D01G014900 chr6B 85.979 863 88 19 7569 8420 11414662 11413822 0.000000e+00 893
34 TraesCS6D01G014900 chr6B 82.962 628 82 6 4960 5565 11417549 11416925 2.070000e-150 544
35 TraesCS6D01G014900 chr6B 81.789 313 51 5 143 452 11430098 11429789 3.020000e-64 257


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G014900 chr6D 6253865 6262284 8419 True 15549.000000 15549 100.000000 1 8420 1 chr6D.!!$R1 8419
1 TraesCS6D01G014900 chr6D 6114402 6118581 4179 True 1365.333333 2115 86.012000 4598 8420 3 chr6D.!!$R2 3822
2 TraesCS6D01G014900 chr6D 6131878 6135848 3970 True 801.750000 1059 85.778750 60 3849 4 chr6D.!!$R3 3789
3 TraesCS6D01G014900 chr6A 5497291 5505828 8537 True 1451.600000 2604 84.402400 188 8372 5 chr6A.!!$R2 8184
4 TraesCS6D01G014900 chr6A 5471879 5481698 9819 True 1152.666667 1965 83.632167 167 8420 6 chr6A.!!$R1 8253
5 TraesCS6D01G014900 chr6A 5548051 5558844 10793 True 1099.500000 2191 85.018000 509 8420 4 chr6A.!!$R3 7911
6 TraesCS6D01G014900 chr6B 11518967 11526849 7882 True 1540.166667 2459 88.500333 1 8420 6 chr6B.!!$R3 8419
7 TraesCS6D01G014900 chr6B 11413822 11419708 5886 True 1249.250000 2041 84.867000 2790 8420 4 chr6B.!!$R1 5630
8 TraesCS6D01G014900 chr6B 11427384 11430098 2714 True 854.333333 1223 84.433667 1 2321 3 chr6B.!!$R2 2320

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
403 733 0.033405 CCCCGTGGTCTTCTCCTCTA 60.033 60.0 0.00 0.00 0.00 2.43 F
807 1259 0.035725 TCTCTTCATGCTGGCAGTGG 60.036 55.0 17.16 6.13 0.00 4.00 F
2538 5288 0.179100 GCATCTGCTCTGCCTCGTTA 60.179 55.0 0.00 0.00 38.21 3.18 F
3651 6452 0.037326 ATCATCAACGCACACGACCT 60.037 50.0 0.00 0.00 43.93 3.85 F
4561 8534 0.095245 GTCGGTGCATGACAACATCG 59.905 55.0 14.94 7.90 34.73 3.84 F
5687 10234 0.107703 CACCGAGATTGGCAGCCTAA 60.108 55.0 14.15 5.87 0.00 2.69 F
6260 10838 0.323999 TCGCTACCTTGCCCTAGTGA 60.324 55.0 0.00 0.00 0.00 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1563 2282 0.952497 ACGTGCTGCCAGATGAAGTG 60.952 55.0 0.00 0.00 0.00 3.16 R
2720 5482 0.309922 GGCGTAGATCGTCATCGGAA 59.690 55.0 0.00 0.00 44.22 4.30 R
4295 8267 0.033504 GAGTGTTGCACGAGGGAGAA 59.966 55.0 0.00 0.00 39.64 2.87 R
4636 8631 0.036022 AACTGCCTTGAGGTCAGAGC 59.964 55.0 20.71 0.00 39.83 4.09 R
6011 10563 0.101040 CATTGTGGTGGCAATAGGCG 59.899 55.0 0.00 0.00 46.16 5.52 R
6894 11481 0.692419 ATGACGGGGAGCTCCTCATT 60.692 55.0 31.90 18.43 35.80 2.57 R
7816 14069 0.676782 GTTCTTATGGTGGCGGCTGT 60.677 55.0 11.43 0.00 0.00 4.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
65 374 6.381498 TTGTGGGTATAGTGAGGAATTTCA 57.619 37.500 0.00 0.00 0.00 2.69
69 378 9.387397 TGTGGGTATAGTGAGGAATTTCATATA 57.613 33.333 0.00 0.00 0.00 0.86
155 464 2.611224 CCCACATGGCTTCTTTTGCTTC 60.611 50.000 0.00 0.00 0.00 3.86
205 516 1.073284 ACAGACGGTTGGGTGCTTTAT 59.927 47.619 0.00 0.00 0.00 1.40
287 613 4.104420 CACTAGTTCTAGCCTCTAGGGGTA 59.896 50.000 11.24 9.45 45.03 3.69
296 622 4.877773 AGCCTCTAGGGGTATCTATCATG 58.122 47.826 11.24 0.00 45.03 3.07
297 623 3.964031 GCCTCTAGGGGTATCTATCATGG 59.036 52.174 11.24 0.00 35.18 3.66
349 679 2.969443 CACGAAATGTGGGTCTTGTC 57.031 50.000 0.00 0.00 45.21 3.18
374 704 2.107141 CATCGGACTTCTCCCGCC 59.893 66.667 0.00 0.00 46.10 6.13
403 733 0.033405 CCCCGTGGTCTTCTCCTCTA 60.033 60.000 0.00 0.00 0.00 2.43
422 752 1.139520 GCATGGCACCGGTTTGATC 59.860 57.895 2.97 0.00 0.00 2.92
466 803 5.416271 AGAAAGGAATACAAACTCGCCTA 57.584 39.130 0.00 0.00 0.00 3.93
467 804 5.801380 AGAAAGGAATACAAACTCGCCTAA 58.199 37.500 0.00 0.00 0.00 2.69
468 805 6.415573 AGAAAGGAATACAAACTCGCCTAAT 58.584 36.000 0.00 0.00 0.00 1.73
704 1084 5.743467 CATGCTTTACGTGTTTGACTGTAA 58.257 37.500 0.00 0.00 0.00 2.41
705 1085 5.146482 TGCTTTACGTGTTTGACTGTAAC 57.854 39.130 0.00 0.00 0.00 2.50
706 1086 4.198584 GCTTTACGTGTTTGACTGTAACG 58.801 43.478 0.00 0.00 40.00 3.18
707 1087 4.754332 CTTTACGTGTTTGACTGTAACGG 58.246 43.478 0.00 0.00 38.52 4.44
773 1225 0.671472 TGTCTCTTCATGCTGGTGCG 60.671 55.000 0.00 0.00 43.34 5.34
774 1226 1.078918 TCTCTTCATGCTGGTGCGG 60.079 57.895 0.00 0.00 43.34 5.69
775 1227 2.747460 TCTTCATGCTGGTGCGGC 60.747 61.111 0.00 0.00 43.34 6.53
776 1228 2.749044 CTTCATGCTGGTGCGGCT 60.749 61.111 0.00 0.00 43.34 5.52
777 1229 3.047718 CTTCATGCTGGTGCGGCTG 62.048 63.158 0.00 0.00 43.34 4.85
778 1230 3.848301 TTCATGCTGGTGCGGCTGT 62.848 57.895 0.00 0.00 43.34 4.40
779 1231 2.436469 CATGCTGGTGCGGCTGTA 60.436 61.111 0.00 0.00 43.34 2.74
780 1232 2.039974 CATGCTGGTGCGGCTGTAA 61.040 57.895 0.00 0.00 43.34 2.41
781 1233 1.303236 ATGCTGGTGCGGCTGTAAA 60.303 52.632 0.00 0.00 43.34 2.01
782 1234 1.308069 ATGCTGGTGCGGCTGTAAAG 61.308 55.000 0.00 0.00 43.34 1.85
783 1235 1.966451 GCTGGTGCGGCTGTAAAGT 60.966 57.895 0.00 0.00 32.24 2.66
784 1236 1.515521 GCTGGTGCGGCTGTAAAGTT 61.516 55.000 0.00 0.00 32.24 2.66
785 1237 0.951558 CTGGTGCGGCTGTAAAGTTT 59.048 50.000 0.00 0.00 0.00 2.66
786 1238 1.336755 CTGGTGCGGCTGTAAAGTTTT 59.663 47.619 0.00 0.00 0.00 2.43
787 1239 1.066303 TGGTGCGGCTGTAAAGTTTTG 59.934 47.619 0.00 0.00 0.00 2.44
788 1240 1.066454 GGTGCGGCTGTAAAGTTTTGT 59.934 47.619 0.00 0.00 0.00 2.83
789 1241 2.381589 GTGCGGCTGTAAAGTTTTGTC 58.618 47.619 0.00 0.00 0.00 3.18
790 1242 2.032924 GTGCGGCTGTAAAGTTTTGTCT 59.967 45.455 0.00 0.00 0.00 3.41
791 1243 2.289547 TGCGGCTGTAAAGTTTTGTCTC 59.710 45.455 0.00 0.00 0.00 3.36
792 1244 2.548480 GCGGCTGTAAAGTTTTGTCTCT 59.452 45.455 0.00 0.00 0.00 3.10
793 1245 3.003378 GCGGCTGTAAAGTTTTGTCTCTT 59.997 43.478 0.00 0.00 0.00 2.85
794 1246 4.773510 CGGCTGTAAAGTTTTGTCTCTTC 58.226 43.478 0.00 0.00 0.00 2.87
795 1247 4.272504 CGGCTGTAAAGTTTTGTCTCTTCA 59.727 41.667 0.00 0.00 0.00 3.02
796 1248 5.049405 CGGCTGTAAAGTTTTGTCTCTTCAT 60.049 40.000 0.00 0.00 0.00 2.57
797 1249 6.145535 GGCTGTAAAGTTTTGTCTCTTCATG 58.854 40.000 0.00 0.00 0.00 3.07
798 1250 5.626955 GCTGTAAAGTTTTGTCTCTTCATGC 59.373 40.000 0.00 0.00 0.00 4.06
799 1251 6.514048 GCTGTAAAGTTTTGTCTCTTCATGCT 60.514 38.462 0.00 0.00 0.00 3.79
800 1252 6.728200 TGTAAAGTTTTGTCTCTTCATGCTG 58.272 36.000 0.00 0.00 0.00 4.41
801 1253 4.843220 AAGTTTTGTCTCTTCATGCTGG 57.157 40.909 0.00 0.00 0.00 4.85
802 1254 2.555757 AGTTTTGTCTCTTCATGCTGGC 59.444 45.455 0.00 0.00 0.00 4.85
803 1255 2.275134 TTTGTCTCTTCATGCTGGCA 57.725 45.000 0.00 0.00 0.00 4.92
804 1256 1.817357 TTGTCTCTTCATGCTGGCAG 58.183 50.000 10.94 10.94 0.00 4.85
805 1257 0.689055 TGTCTCTTCATGCTGGCAGT 59.311 50.000 17.16 0.00 0.00 4.40
806 1258 1.085091 GTCTCTTCATGCTGGCAGTG 58.915 55.000 17.16 7.60 0.00 3.66
807 1259 0.035725 TCTCTTCATGCTGGCAGTGG 60.036 55.000 17.16 6.13 0.00 4.00
808 1260 1.654954 CTCTTCATGCTGGCAGTGGC 61.655 60.000 17.16 10.30 40.13 5.01
809 1261 1.974875 CTTCATGCTGGCAGTGGCA 60.975 57.895 19.44 19.44 43.71 4.92
816 1268 2.851588 TGGCAGTGGCAGGTACCA 60.852 61.111 16.56 0.00 43.71 3.25
817 1269 2.434331 GGCAGTGGCAGGTACCAA 59.566 61.111 15.94 0.00 42.70 3.67
818 1270 1.000896 GGCAGTGGCAGGTACCAAT 60.001 57.895 15.94 0.00 42.70 3.16
820 1272 4.743018 AGTGGCAGGTACCAATGC 57.257 55.556 15.94 15.97 42.70 3.56
821 1273 1.767036 AGTGGCAGGTACCAATGCA 59.233 52.632 23.31 10.18 44.37 3.96
822 1274 0.322816 AGTGGCAGGTACCAATGCAG 60.323 55.000 23.31 4.70 44.37 4.41
823 1275 0.322456 GTGGCAGGTACCAATGCAGA 60.322 55.000 23.31 9.86 44.37 4.26
824 1276 0.625316 TGGCAGGTACCAATGCAGAT 59.375 50.000 23.31 0.00 44.37 2.90
825 1277 1.027357 GGCAGGTACCAATGCAGATG 58.973 55.000 23.31 8.51 44.37 2.90
826 1278 1.408683 GGCAGGTACCAATGCAGATGA 60.409 52.381 23.31 0.00 44.37 2.92
829 1281 0.940126 GGTACCAATGCAGATGAGCG 59.060 55.000 7.15 0.00 37.31 5.03
841 1346 0.384477 GATGAGCGGTAGAGCGTACG 60.384 60.000 11.84 11.84 43.00 3.67
1424 2011 6.989169 ACATATCTCCATGTTCTAGCTTGTTC 59.011 38.462 0.00 0.00 35.60 3.18
1451 2170 5.896678 AGGTATAGATCTGATAGATGTGCCC 59.103 44.000 5.18 0.00 34.53 5.36
1698 2420 0.250513 AGGGCAAGGAGTGAACGATC 59.749 55.000 0.00 0.00 0.00 3.69
1802 2524 2.599973 GCATGAATTGTTCGTCAATGCC 59.400 45.455 0.00 5.93 44.85 4.40
1843 2565 3.119291 CAGAAGGTGCGTGAGATACATC 58.881 50.000 0.00 0.00 0.00 3.06
1867 2589 5.221106 CCGAAATGCATGAATGGTCAACTAT 60.221 40.000 0.00 0.00 37.30 2.12
1890 2612 2.463752 GATACCTACCTGTGGACCACA 58.536 52.381 25.61 25.61 42.45 4.17
2375 4870 3.650950 GCACTCCCTTGCTCCCCA 61.651 66.667 0.00 0.00 39.59 4.96
2427 5177 0.539438 TGGCTTCACCACACATTCCC 60.539 55.000 0.00 0.00 46.36 3.97
2455 5205 1.694844 TGGTTGTCCACGTCTAGTCA 58.305 50.000 0.00 0.00 39.03 3.41
2538 5288 0.179100 GCATCTGCTCTGCCTCGTTA 60.179 55.000 0.00 0.00 38.21 3.18
2543 5293 1.144936 GCTCTGCCTCGTTAGCCAT 59.855 57.895 0.00 0.00 0.00 4.40
2547 5297 1.555075 TCTGCCTCGTTAGCCATTCTT 59.445 47.619 0.00 0.00 0.00 2.52
2566 5316 1.073373 TTTTTGCCATCCCGGTCGA 59.927 52.632 0.00 0.00 36.97 4.20
2612 5374 0.745845 ACCTCATGTTGCTCATCGGC 60.746 55.000 0.00 0.00 34.09 5.54
2652 5414 5.471556 TGTCTTACCTCACACCGATTTTA 57.528 39.130 0.00 0.00 0.00 1.52
2667 5429 5.095490 CCGATTTTAATGACTTCTTGTGGC 58.905 41.667 0.00 0.00 0.00 5.01
2668 5430 5.335583 CCGATTTTAATGACTTCTTGTGGCA 60.336 40.000 0.00 0.00 0.00 4.92
2680 5442 3.286353 TCTTGTGGCAGATTTGTGTTCA 58.714 40.909 0.00 0.00 0.00 3.18
2681 5443 3.316029 TCTTGTGGCAGATTTGTGTTCAG 59.684 43.478 0.00 0.00 0.00 3.02
2704 5466 1.003839 GATGTTGCCACCCTCACGA 60.004 57.895 0.00 0.00 0.00 4.35
2720 5482 3.875727 CTCACGATGGCAGATTCATTCTT 59.124 43.478 0.00 0.00 29.93 2.52
2724 5486 3.303593 CGATGGCAGATTCATTCTTTCCG 60.304 47.826 0.00 0.00 29.93 4.30
2726 5488 3.889815 TGGCAGATTCATTCTTTCCGAT 58.110 40.909 0.00 0.00 29.93 4.18
2751 5513 4.357018 GATCTACGCCATGATCGTATCA 57.643 45.455 16.57 9.67 44.55 2.15
2762 5524 2.628178 TGATCGTATCATCCTCCGCTTT 59.372 45.455 0.00 0.00 33.59 3.51
2775 5537 1.089920 CCGCTTTCACTCATCCTTGG 58.910 55.000 0.00 0.00 0.00 3.61
2815 5607 2.121963 ACTTCCAGGAGTGGGCCA 60.122 61.111 0.00 0.00 45.11 5.36
2848 5640 3.366052 CCTATGGCAGTTGGGTAGTTT 57.634 47.619 0.00 0.00 0.00 2.66
2860 5652 1.543871 GGGTAGTTTCTTGGCAACGGA 60.544 52.381 0.00 0.00 42.51 4.69
2874 5666 2.741985 CGGATGCGGTGTTGCTCA 60.742 61.111 0.00 0.00 35.36 4.26
3036 5828 1.213678 CATGTGAGTCATCCACCCCAT 59.786 52.381 0.00 0.00 34.09 4.00
3081 5875 2.304056 CCCCACATGCTCCTGGACT 61.304 63.158 1.70 0.00 0.00 3.85
3133 5927 9.455144 TCCACTATATAAATAAAACCTCTCCCA 57.545 33.333 0.00 0.00 0.00 4.37
3163 5957 2.568546 TAGATTGCCTCTCCCCTTCA 57.431 50.000 0.00 0.00 35.28 3.02
3173 5967 0.543749 CTCCCCTTCACTGACCATCC 59.456 60.000 0.00 0.00 0.00 3.51
3215 6013 1.281867 CTCCCAAAGCCTATCACCACA 59.718 52.381 0.00 0.00 0.00 4.17
3229 6027 2.166829 CACCACACAGAGCTCTCTAGT 58.833 52.381 14.96 9.83 37.98 2.57
3289 6087 2.241176 AGATTGCCGAGACCCCATTTTA 59.759 45.455 0.00 0.00 0.00 1.52
3347 6145 1.612462 CCTGCATGCTTCTGACCTTCA 60.612 52.381 20.33 0.00 0.00 3.02
3383 6181 4.440829 TGGCTTTCCCATCCCCGC 62.441 66.667 0.00 0.00 39.18 6.13
3384 6182 4.129148 GGCTTTCCCATCCCCGCT 62.129 66.667 0.00 0.00 0.00 5.52
3389 6187 0.914417 TTTCCCATCCCCGCTTCTCT 60.914 55.000 0.00 0.00 0.00 3.10
3417 6215 1.381327 CCGCTCCCAACCTCCTCTA 60.381 63.158 0.00 0.00 0.00 2.43
3495 6293 1.317613 GTGGAAGAACACATGGTGCA 58.682 50.000 0.00 0.00 40.99 4.57
3546 6345 2.124151 GCGCCACCTGGGATGATT 60.124 61.111 0.00 0.00 40.01 2.57
3554 6353 1.358830 CCTGGGATGATTGGGCCTCT 61.359 60.000 4.53 0.00 0.00 3.69
3556 6355 0.920763 TGGGATGATTGGGCCTCTGT 60.921 55.000 4.53 0.00 0.00 3.41
3563 6362 0.038744 ATTGGGCCTCTGTCCTTGTG 59.961 55.000 4.53 0.00 37.08 3.33
3577 6378 7.732025 TCTGTCCTTGTGTTATCAACTAAAGA 58.268 34.615 6.11 0.00 30.83 2.52
3578 6379 8.375506 TCTGTCCTTGTGTTATCAACTAAAGAT 58.624 33.333 6.11 0.00 30.83 2.40
3597 6398 3.207354 GAGGTTCATCTCGGCGGA 58.793 61.111 7.21 3.43 0.00 5.54
3606 6407 2.017049 CATCTCGGCGGATTTTTCCTT 58.983 47.619 7.21 0.00 0.00 3.36
3636 6437 2.639839 CTCGGGTCTATTTCCCCATCAT 59.360 50.000 0.00 0.00 41.30 2.45
3644 6445 1.173043 TTTCCCCATCATCAACGCAC 58.827 50.000 0.00 0.00 0.00 5.34
3648 6449 1.018752 CCCATCATCAACGCACACGA 61.019 55.000 0.00 0.00 43.93 4.35
3651 6452 0.037326 ATCATCAACGCACACGACCT 60.037 50.000 0.00 0.00 43.93 3.85
3718 6521 1.563924 TGGGCAACACTATCGGTAGT 58.436 50.000 1.45 1.45 41.84 2.73
3729 6532 0.325860 ATCGGTAGTTGTGGGCCCTA 60.326 55.000 25.70 9.60 0.00 3.53
3775 7712 2.351738 CCTGAAGTGCGGAAAAATGACC 60.352 50.000 0.00 0.00 0.00 4.02
3838 7775 0.666577 ACACCGCTGCTTTAGTCGAC 60.667 55.000 7.70 7.70 0.00 4.20
3849 7786 2.322355 TTAGTCGACCTACCTCTCCG 57.678 55.000 13.01 0.00 0.00 4.63
3851 7788 1.748122 GTCGACCTACCTCTCCGCA 60.748 63.158 3.51 0.00 0.00 5.69
3867 7805 1.200716 CCGCAACCGTCTCTACACTTA 59.799 52.381 0.00 0.00 0.00 2.24
3913 7866 5.338708 CGCCCCTCTTATCAAGATGGATATT 60.339 44.000 10.69 0.00 43.59 1.28
3966 7919 3.075005 GGACTCTGCCGCCACCTA 61.075 66.667 0.00 0.00 0.00 3.08
3968 7921 3.701604 GACTCTGCCGCCACCTACG 62.702 68.421 0.00 0.00 0.00 3.51
4040 7993 1.082117 GGTTCCATGTGCTACCGTCG 61.082 60.000 0.00 0.00 0.00 5.12
4045 7998 0.109272 CATGTGCTACCGTCGTCTGT 60.109 55.000 0.00 0.00 0.00 3.41
4127 8099 3.322466 CGCCCCTGACCTCCAACT 61.322 66.667 0.00 0.00 0.00 3.16
4157 8129 2.291465 GTCTTGTGTTGCATCTGAAGCA 59.709 45.455 3.07 3.07 40.85 3.91
4181 8153 1.089920 CGGAGTGGGCTCAAGATTTG 58.910 55.000 0.00 0.00 43.37 2.32
4188 8160 3.319122 GTGGGCTCAAGATTTGTCAAAGT 59.681 43.478 4.03 0.00 0.00 2.66
4201 8173 6.569179 TTTGTCAAAGTAGCTCAAATACCC 57.431 37.500 0.00 0.00 0.00 3.69
4212 8184 4.164796 AGCTCAAATACCCTGATGTCATCA 59.835 41.667 14.76 14.76 37.76 3.07
4284 8256 3.522343 ACATGGTCTCCCTAACCCTAAAC 59.478 47.826 0.00 0.00 35.84 2.01
4293 8265 3.844804 CCCTAACCCTAAACTCCTCTTGT 59.155 47.826 0.00 0.00 0.00 3.16
4295 8267 4.286291 CCTAACCCTAAACTCCTCTTGTGT 59.714 45.833 0.00 0.00 0.00 3.72
4335 8308 1.559368 CTTGCCCCCATGAACATCAA 58.441 50.000 0.00 0.00 0.00 2.57
4349 8322 7.148540 CCATGAACATCAATGTGTGGATTTTTC 60.149 37.037 13.22 0.00 41.61 2.29
4356 8329 4.759516 ATGTGTGGATTTTTCGTGGTAC 57.240 40.909 0.00 0.00 0.00 3.34
4358 8331 4.138290 TGTGTGGATTTTTCGTGGTACAT 58.862 39.130 0.00 0.00 44.52 2.29
4360 8333 3.057876 TGTGGATTTTTCGTGGTACATGC 60.058 43.478 0.00 0.00 46.56 4.06
4390 8363 5.712152 ATTCTTTTGCAAACTCGGAGATT 57.288 34.783 12.39 2.92 33.89 2.40
4393 8366 0.881118 TTGCAAACTCGGAGATTGGC 59.119 50.000 23.83 17.04 33.89 4.52
4461 8434 0.602106 AGATTGCATGCCTCGATCGG 60.602 55.000 16.68 5.93 31.26 4.18
4524 8497 6.409349 GCACCCTTTATTACTTCTACCATCCT 60.409 42.308 0.00 0.00 0.00 3.24
4528 8501 8.495260 CCCTTTATTACTTCTACCATCCTCTTT 58.505 37.037 0.00 0.00 0.00 2.52
4560 8533 1.155889 TGTCGGTGCATGACAACATC 58.844 50.000 18.88 0.00 42.99 3.06
4561 8534 0.095245 GTCGGTGCATGACAACATCG 59.905 55.000 14.94 7.90 34.73 3.84
4568 8541 1.280982 CATGACAACATCGACCTCCG 58.719 55.000 0.00 0.00 34.15 4.63
4634 8629 2.653448 CTCGTGCATCCGCTCTCG 60.653 66.667 0.00 0.00 39.64 4.04
4727 8722 2.969821 TTTTCCTCAAGCAGGCCTAA 57.030 45.000 3.98 0.00 43.08 2.69
4774 8770 5.008613 TGCTCTCACAAAATGGTTCTACAAC 59.991 40.000 0.00 0.00 0.00 3.32
4786 8782 0.601558 TCTACAACCACGAGGCTGAC 59.398 55.000 9.37 0.00 39.06 3.51
4792 8788 1.557099 ACCACGAGGCTGACTATTCA 58.443 50.000 0.00 0.00 39.06 2.57
4854 8852 0.908198 GCTCCCACCTCTCTGACAAT 59.092 55.000 0.00 0.00 0.00 2.71
4891 8893 2.676471 CAAAACTGCCCCCTCCCG 60.676 66.667 0.00 0.00 0.00 5.14
4923 8925 2.164422 TGTCGTGAGTCATGATGTCTCC 59.836 50.000 17.84 5.05 32.76 3.71
4941 8943 1.565390 CCCCAGGAGCCACTCATTCA 61.565 60.000 0.00 0.00 31.08 2.57
4958 8960 6.993902 ACTCATTCATTTCCTTGTGCATTTTT 59.006 30.769 0.00 0.00 0.00 1.94
5021 9023 2.711922 ATCGTCACCGTGGAGCTCC 61.712 63.158 26.78 26.78 35.01 4.70
5046 9048 4.731773 GCAATGCTTCCATTAGTACAGTGC 60.732 45.833 0.00 0.00 39.60 4.40
5162 9188 4.788679 TCGGTCTGTAGTCATCCTCAATA 58.211 43.478 0.00 0.00 0.00 1.90
5231 9258 2.013006 TCCCTTGTCCCCTACCTCTTA 58.987 52.381 0.00 0.00 0.00 2.10
5243 9270 5.304871 CCCCTACCTCTTAATCCTAGTTGTC 59.695 48.000 0.00 0.00 0.00 3.18
5253 9280 8.622157 TCTTAATCCTAGTTGTCTATGTTCTCG 58.378 37.037 0.00 0.00 0.00 4.04
5258 9285 2.747989 AGTTGTCTATGTTCTCGAGCGA 59.252 45.455 7.81 0.00 0.00 4.93
5279 9306 1.452651 CATCCTCGCCATTGGTGCT 60.453 57.895 11.54 0.00 32.51 4.40
5280 9307 1.452651 ATCCTCGCCATTGGTGCTG 60.453 57.895 11.54 6.72 32.51 4.41
5298 9326 4.966787 ACGGTGGCGGCCAAACAT 62.967 61.111 25.70 5.37 34.18 2.71
5346 9375 4.224594 CCAGTCCTGCTATATGTGGATGAT 59.775 45.833 0.00 0.00 0.00 2.45
5382 9411 1.903183 ACTAGCCTCACCCTCAACTTC 59.097 52.381 0.00 0.00 0.00 3.01
5414 9443 2.295070 TGTTCATTCCTCTCAACGTCGA 59.705 45.455 0.00 0.00 0.00 4.20
5493 9523 2.678190 GCAACAGTACTAGGGCTTCTGG 60.678 54.545 0.00 0.00 0.00 3.86
5520 9550 2.228059 CCCACAAGCTCATGATCATCC 58.772 52.381 4.86 0.00 0.00 3.51
5526 9556 3.596310 AGCTCATGATCATCCATCTCG 57.404 47.619 4.86 0.00 31.92 4.04
5549 9579 2.363680 CCCTCTCATTGCTCGTGTAGAT 59.636 50.000 0.00 0.00 0.00 1.98
5568 9598 4.455606 AGATAAAATGGCTCACTAGGTGC 58.544 43.478 0.00 0.00 32.98 5.01
5603 9633 1.835494 TCCTCGACTGACAAGGGTAG 58.165 55.000 0.00 0.00 0.00 3.18
5621 10166 2.031465 TTTTGTCGACGCCCCTCC 59.969 61.111 11.62 0.00 0.00 4.30
5623 10168 1.186917 TTTTGTCGACGCCCCTCCTA 61.187 55.000 11.62 0.00 0.00 2.94
5646 10191 2.002586 CATTGAAGACCACCTACTGCG 58.997 52.381 0.00 0.00 0.00 5.18
5686 10233 1.264749 ACACCGAGATTGGCAGCCTA 61.265 55.000 14.15 5.25 0.00 3.93
5687 10234 0.107703 CACCGAGATTGGCAGCCTAA 60.108 55.000 14.15 5.87 0.00 2.69
5697 10245 3.370840 TGGCAGCCTAAATGATGAGTT 57.629 42.857 14.15 0.00 0.00 3.01
5718 10266 1.902508 GGGGAAGATGTCACTCTCACA 59.097 52.381 0.00 0.00 0.00 3.58
5724 10272 2.697751 AGATGTCACTCTCACATAGGGC 59.302 50.000 0.00 0.00 34.49 5.19
5725 10273 1.937191 TGTCACTCTCACATAGGGCA 58.063 50.000 0.00 0.00 0.00 5.36
5749 10297 2.438975 CACCGCATCATGCACCCT 60.439 61.111 11.00 0.00 45.36 4.34
5818 10366 1.702182 TGCATGTTGTGGACACCATT 58.298 45.000 0.00 0.00 42.04 3.16
5863 10413 2.683867 CGCCCCCGTAAATGTAAATTCA 59.316 45.455 0.00 0.00 0.00 2.57
5879 10429 5.391312 AAATTCATCCTTTGGTTCTTCCG 57.609 39.130 0.00 0.00 39.52 4.30
5886 10436 3.146066 CCTTTGGTTCTTCCGTCATCAA 58.854 45.455 0.00 0.00 39.52 2.57
5902 10452 0.530744 TCAACGACTTCCCATCTCCG 59.469 55.000 0.00 0.00 0.00 4.63
5905 10455 2.427245 CGACTTCCCATCTCCGCCT 61.427 63.158 0.00 0.00 0.00 5.52
5909 10459 3.976490 TTCCCATCTCCGCCTCCGT 62.976 63.158 0.00 0.00 0.00 4.69
5924 10474 1.194547 CTCCGTCACAACATTTCCACG 59.805 52.381 0.00 0.00 0.00 4.94
6011 10563 2.098293 CCATTTGGGCACTAGACGC 58.902 57.895 0.00 0.00 0.00 5.19
6028 10580 2.339556 GCGCCTATTGCCACCACAA 61.340 57.895 0.00 0.00 36.24 3.33
6062 10614 2.788191 CTTGTCAGCACCCTCGACCC 62.788 65.000 0.00 0.00 0.00 4.46
6076 10628 1.635817 CGACCCCATGGATCACCCTT 61.636 60.000 15.22 0.00 35.38 3.95
6086 10638 4.207698 TGGATCACCCTTGCCTATACTA 57.792 45.455 0.00 0.00 35.38 1.82
6100 10652 4.882427 GCCTATACTACACAGTCTGTCTCA 59.118 45.833 1.37 0.00 36.14 3.27
6119 10671 6.667848 TGTCTCACCATCCTCTAGAACATTTA 59.332 38.462 0.00 0.00 0.00 1.40
6126 10678 7.570607 ACCATCCTCTAGAACATTTAGGAGATT 59.429 37.037 0.00 0.00 39.62 2.40
6142 10694 3.429410 GGAGATTTGTAATGCCAAGGTGC 60.429 47.826 0.00 0.00 0.00 5.01
6153 10706 1.543429 GCCAAGGTGCTCACAACTAGT 60.543 52.381 2.21 0.00 45.50 2.57
6154 10707 2.146342 CCAAGGTGCTCACAACTAGTG 58.854 52.381 0.00 0.00 45.50 2.74
6169 10723 4.538746 ACTAGTGTGCTCCCTTTTCTAC 57.461 45.455 0.00 0.00 0.00 2.59
6178 10732 3.628032 GCTCCCTTTTCTACTATTGTGGC 59.372 47.826 0.00 0.00 0.00 5.01
6181 10735 5.007682 TCCCTTTTCTACTATTGTGGCAAC 58.992 41.667 0.00 0.00 0.00 4.17
6198 10776 4.221041 TGGCAACATCAACATCAACATCAT 59.779 37.500 0.00 0.00 46.17 2.45
6199 10777 4.565166 GGCAACATCAACATCAACATCATG 59.435 41.667 0.00 0.00 0.00 3.07
6246 10824 2.047274 GGGTGCAGTGCTTCGCTA 60.047 61.111 17.60 0.00 0.00 4.26
6260 10838 0.323999 TCGCTACCTTGCCCTAGTGA 60.324 55.000 0.00 0.00 0.00 3.41
6262 10840 1.066430 CGCTACCTTGCCCTAGTGAAA 60.066 52.381 0.00 0.00 0.00 2.69
6269 10847 2.163818 TGCCCTAGTGAAACGTTCAG 57.836 50.000 0.00 0.00 45.86 3.02
6323 10902 7.092399 ACCCTAAAACCTATAGCTCTGATGTTT 60.092 37.037 0.00 0.00 0.00 2.83
6461 11042 8.776061 AACTACTCTAATTCTCTCATAAGGCT 57.224 34.615 0.00 0.00 0.00 4.58
6498 11079 4.036734 GTGTTGGTGATCTCTTCTTGCAAA 59.963 41.667 0.00 0.00 0.00 3.68
6504 11085 4.217118 GTGATCTCTTCTTGCAAACCACAT 59.783 41.667 0.00 0.00 0.00 3.21
6527 11109 8.562892 ACATGAGACTAGTTTTTCAAGACAATG 58.437 33.333 0.00 0.00 0.00 2.82
6528 11110 6.959361 TGAGACTAGTTTTTCAAGACAATGC 58.041 36.000 0.00 0.00 0.00 3.56
6566 11149 9.319143 GGATCCCAATCTGAATATATTACTTCG 57.681 37.037 0.00 0.00 32.12 3.79
6613 11196 4.263949 TGACATCTCTTCTAGGAGGTCACA 60.264 45.833 9.28 0.00 44.51 3.58
6673 11256 8.008922 AGTGCTCTTTTATGGTACCCTATACTA 58.991 37.037 10.07 0.00 0.00 1.82
6674 11257 8.813951 GTGCTCTTTTATGGTACCCTATACTAT 58.186 37.037 10.07 0.00 0.00 2.12
6712 11295 6.726490 ATCATGGAGATCAAAATTCCCAAG 57.274 37.500 0.00 0.00 28.20 3.61
6821 11408 3.563479 GGGAAGATCCTAGTTTTTGGCCA 60.563 47.826 0.00 0.00 36.57 5.36
6839 11426 2.159085 GCCAGCTAACTAATCGAGGTGT 60.159 50.000 0.00 0.00 37.06 4.16
6894 11481 0.889186 GGGCTGCCTCTTTTTCGTGA 60.889 55.000 19.68 0.00 0.00 4.35
7006 11593 2.264794 GGAGTCGTGACCGCCATT 59.735 61.111 0.00 0.00 0.00 3.16
7066 11671 1.856265 GCCTCTTTGGTGGCGACTTG 61.856 60.000 0.00 0.00 41.35 3.16
7078 11683 1.739562 CGACTTGAGTGGAGCTGCC 60.740 63.158 1.53 0.00 37.10 4.85
7207 11812 6.486253 TTAATCATAGGATCGAATTGCTGC 57.514 37.500 0.00 0.00 31.88 5.25
7311 11921 4.836125 AATGCTTGAAATTCAGTGACGT 57.164 36.364 0.00 0.00 0.00 4.34
7407 12017 2.654863 AGGGCTTGGATAATTGAACCG 58.345 47.619 0.00 0.00 0.00 4.44
7416 12026 4.946772 TGGATAATTGAACCGCTGATCAAA 59.053 37.500 5.00 0.00 38.88 2.69
7435 12045 8.514594 TGATCAAATAACAAGGTCATGAACTTC 58.485 33.333 23.26 8.77 35.91 3.01
7436 12046 6.898041 TCAAATAACAAGGTCATGAACTTCG 58.102 36.000 23.26 19.23 35.91 3.79
7467 12077 0.326264 GAGGTCAAGGATGTGCCAGT 59.674 55.000 0.00 0.00 40.02 4.00
7525 12142 1.760875 GGGGGATGGCGACTAGACA 60.761 63.158 0.00 0.00 45.56 3.41
7578 12195 3.053095 ACCAGCATGAGGAGGATGAAAAT 60.053 43.478 11.16 0.00 39.69 1.82
7612 12277 6.179756 AGGTCCTTGCAAACAAAGAAATTTT 58.820 32.000 0.00 0.00 34.74 1.82
7680 12347 4.862574 CGATGGGATTATATGTGTACCACG 59.137 45.833 0.00 0.00 37.14 4.94
7692 13945 0.108472 GTACCACGCAGTTCCCTACC 60.108 60.000 0.00 0.00 41.61 3.18
7816 14069 6.108687 AGCATTTCTTAGACGATGAACATGA 58.891 36.000 0.00 0.00 0.00 3.07
7822 14075 0.647410 GACGATGAACATGACAGCCG 59.353 55.000 0.00 9.56 0.00 5.52
7829 14082 2.438975 CATGACAGCCGCCACCAT 60.439 61.111 0.00 0.00 0.00 3.55
7848 14101 3.365832 CATAAGAACAATCACATGCGGC 58.634 45.455 0.00 0.00 0.00 6.53
7901 14154 5.856156 AGATCGAAGATCAAAGATGATGCT 58.144 37.500 11.94 0.00 46.30 3.79
7932 14186 6.169094 CACACCTAGAACAAGAACTCATCAT 58.831 40.000 0.00 0.00 0.00 2.45
7968 14222 2.293170 GCCTTTGGATAGTCTTGAGCC 58.707 52.381 0.00 0.00 0.00 4.70
8100 14361 4.517952 CCAATGTCAATGCTTGGTGTTA 57.482 40.909 0.00 0.00 35.70 2.41
8107 14368 3.157087 CAATGCTTGGTGTTAGGGTTCT 58.843 45.455 0.00 0.00 0.00 3.01
8108 14369 4.042311 TCAATGCTTGGTGTTAGGGTTCTA 59.958 41.667 0.00 0.00 0.00 2.10
8203 14464 1.304282 GGAGCCTGGGCAAGATTGA 59.696 57.895 14.39 0.00 44.88 2.57
8271 14532 3.586470 TGGTGGTACCATTGAGTTTGT 57.414 42.857 19.72 0.00 44.79 2.83
8319 14580 9.127560 TGAAGGGACATGGGAAATTCTATATAT 57.872 33.333 0.00 0.00 0.00 0.86
8361 14622 9.262358 GAGTTTGACTCTCTATACTTTTGTTGT 57.738 33.333 0.97 0.00 41.88 3.32
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
134 443 0.971386 AGCAAAAGAAGCCATGTGGG 59.029 50.000 0.54 0.00 40.85 4.61
174 485 5.358160 ACCCAACCGTCTGTACTAGTATTAC 59.642 44.000 5.75 4.30 0.00 1.89
205 516 3.002791 CGAGATGGAAGCACTTTAAGCA 58.997 45.455 0.00 0.00 0.00 3.91
287 613 1.902508 CCGGTACTGCCCATGATAGAT 59.097 52.381 0.00 0.00 0.00 1.98
296 622 2.513897 GCATGTCCGGTACTGCCC 60.514 66.667 0.00 0.00 0.00 5.36
297 623 1.078426 AAGCATGTCCGGTACTGCC 60.078 57.895 17.18 4.58 34.62 4.85
337 663 1.522806 GTGTGCGACAAGACCCACA 60.523 57.895 0.00 0.00 35.99 4.17
345 675 1.068250 TCCGATGTGTGTGCGACAA 59.932 52.632 0.00 0.00 35.91 3.18
349 679 0.667487 AGAAGTCCGATGTGTGTGCG 60.667 55.000 0.00 0.00 0.00 5.34
374 704 2.189521 CCACGGGGAATCCTTCGG 59.810 66.667 0.00 8.09 35.59 4.30
403 733 1.304381 ATCAAACCGGTGCCATGCT 60.304 52.632 8.52 0.00 0.00 3.79
422 752 0.439985 CAAAGTGTGTCGCATCTCCG 59.560 55.000 0.00 0.00 0.00 4.63
706 1086 2.125147 TAGCATGCACAGCCGTCC 60.125 61.111 21.98 0.00 0.00 4.79
707 1087 2.817423 GCTAGCATGCACAGCCGTC 61.817 63.158 25.80 6.12 0.00 4.79
773 1225 5.751243 TGAAGAGACAAAACTTTACAGCC 57.249 39.130 0.00 0.00 0.00 4.85
774 1226 5.626955 GCATGAAGAGACAAAACTTTACAGC 59.373 40.000 0.00 0.00 0.00 4.40
775 1227 6.854892 CAGCATGAAGAGACAAAACTTTACAG 59.145 38.462 0.00 0.00 39.69 2.74
776 1228 6.238731 CCAGCATGAAGAGACAAAACTTTACA 60.239 38.462 0.00 0.00 39.69 2.41
777 1229 6.145535 CCAGCATGAAGAGACAAAACTTTAC 58.854 40.000 0.00 0.00 39.69 2.01
778 1230 5.278463 GCCAGCATGAAGAGACAAAACTTTA 60.278 40.000 0.00 0.00 39.69 1.85
779 1231 4.500375 GCCAGCATGAAGAGACAAAACTTT 60.500 41.667 0.00 0.00 39.69 2.66
780 1232 3.005155 GCCAGCATGAAGAGACAAAACTT 59.995 43.478 0.00 0.00 39.69 2.66
781 1233 2.555757 GCCAGCATGAAGAGACAAAACT 59.444 45.455 0.00 0.00 39.69 2.66
782 1234 2.294233 TGCCAGCATGAAGAGACAAAAC 59.706 45.455 0.00 0.00 39.69 2.43
783 1235 2.555325 CTGCCAGCATGAAGAGACAAAA 59.445 45.455 0.00 0.00 39.69 2.44
784 1236 2.156917 CTGCCAGCATGAAGAGACAAA 58.843 47.619 0.00 0.00 39.69 2.83
785 1237 1.072806 ACTGCCAGCATGAAGAGACAA 59.927 47.619 0.00 0.00 39.69 3.18
786 1238 0.689055 ACTGCCAGCATGAAGAGACA 59.311 50.000 0.00 0.00 39.69 3.41
787 1239 1.085091 CACTGCCAGCATGAAGAGAC 58.915 55.000 0.00 0.00 39.69 3.36
788 1240 0.035725 CCACTGCCAGCATGAAGAGA 60.036 55.000 0.00 0.00 39.69 3.10
789 1241 1.654954 GCCACTGCCAGCATGAAGAG 61.655 60.000 0.00 0.00 39.69 2.85
790 1242 1.676635 GCCACTGCCAGCATGAAGA 60.677 57.895 0.00 0.00 39.69 2.87
791 1243 1.934220 CTGCCACTGCCAGCATGAAG 61.934 60.000 0.00 0.00 38.56 3.02
792 1244 1.974875 CTGCCACTGCCAGCATGAA 60.975 57.895 0.00 0.00 38.56 2.57
793 1245 2.360726 CTGCCACTGCCAGCATGA 60.361 61.111 0.00 0.00 38.56 3.07
794 1246 2.825075 TACCTGCCACTGCCAGCATG 62.825 60.000 0.00 0.00 38.56 4.06
795 1247 2.605607 TACCTGCCACTGCCAGCAT 61.606 57.895 0.00 0.00 38.56 3.79
796 1248 3.248418 TACCTGCCACTGCCAGCA 61.248 61.111 0.00 0.00 36.33 4.41
797 1249 2.747855 GTACCTGCCACTGCCAGC 60.748 66.667 0.00 0.00 36.33 4.85
798 1250 2.045926 GGTACCTGCCACTGCCAG 60.046 66.667 4.06 0.00 36.33 4.85
799 1251 1.788518 ATTGGTACCTGCCACTGCCA 61.789 55.000 14.36 0.00 38.42 4.92
800 1252 1.000896 ATTGGTACCTGCCACTGCC 60.001 57.895 14.36 0.00 38.42 4.85
801 1253 2.183409 CATTGGTACCTGCCACTGC 58.817 57.895 14.36 0.00 38.42 4.40
802 1254 0.608856 TGCATTGGTACCTGCCACTG 60.609 55.000 20.19 3.81 40.73 3.66
803 1255 0.322816 CTGCATTGGTACCTGCCACT 60.323 55.000 20.19 0.00 38.42 4.00
804 1256 0.322456 TCTGCATTGGTACCTGCCAC 60.322 55.000 20.19 4.93 38.42 5.01
805 1257 0.625316 ATCTGCATTGGTACCTGCCA 59.375 50.000 20.19 9.70 35.51 4.92
806 1258 1.027357 CATCTGCATTGGTACCTGCC 58.973 55.000 20.19 6.25 35.51 4.85
807 1259 1.945394 CTCATCTGCATTGGTACCTGC 59.055 52.381 17.14 17.14 36.67 4.85
808 1260 1.945394 GCTCATCTGCATTGGTACCTG 59.055 52.381 14.36 5.02 0.00 4.00
809 1261 1.473965 CGCTCATCTGCATTGGTACCT 60.474 52.381 14.36 0.00 0.00 3.08
810 1262 0.940126 CGCTCATCTGCATTGGTACC 59.060 55.000 4.43 4.43 0.00 3.34
811 1263 0.940126 CCGCTCATCTGCATTGGTAC 59.060 55.000 0.00 0.00 0.00 3.34
812 1264 0.541392 ACCGCTCATCTGCATTGGTA 59.459 50.000 0.00 0.00 0.00 3.25
813 1265 0.541392 TACCGCTCATCTGCATTGGT 59.459 50.000 0.00 0.00 0.00 3.67
814 1266 1.202568 TCTACCGCTCATCTGCATTGG 60.203 52.381 0.00 0.00 0.00 3.16
815 1267 2.133553 CTCTACCGCTCATCTGCATTG 58.866 52.381 0.00 0.00 0.00 2.82
816 1268 1.539929 GCTCTACCGCTCATCTGCATT 60.540 52.381 0.00 0.00 0.00 3.56
817 1269 0.033228 GCTCTACCGCTCATCTGCAT 59.967 55.000 0.00 0.00 0.00 3.96
818 1270 1.439228 GCTCTACCGCTCATCTGCA 59.561 57.895 0.00 0.00 0.00 4.41
819 1271 1.659954 CGCTCTACCGCTCATCTGC 60.660 63.158 0.00 0.00 0.00 4.26
820 1272 0.945099 TACGCTCTACCGCTCATCTG 59.055 55.000 0.00 0.00 0.00 2.90
821 1273 0.945813 GTACGCTCTACCGCTCATCT 59.054 55.000 0.00 0.00 0.00 2.90
822 1274 0.384477 CGTACGCTCTACCGCTCATC 60.384 60.000 0.52 0.00 0.00 2.92
823 1275 1.647629 CGTACGCTCTACCGCTCAT 59.352 57.895 0.52 0.00 0.00 2.90
824 1276 3.095911 CGTACGCTCTACCGCTCA 58.904 61.111 0.52 0.00 0.00 4.26
825 1277 2.352115 GCGTACGCTCTACCGCTC 60.352 66.667 31.95 0.00 42.66 5.03
826 1278 4.233635 CGCGTACGCTCTACCGCT 62.234 66.667 34.69 0.00 43.70 5.52
829 1281 1.582168 GACACGCGTACGCTCTACC 60.582 63.158 34.69 17.49 45.53 3.18
841 1346 0.166814 GTCCAATCAAGCAGACACGC 59.833 55.000 0.00 0.00 0.00 5.34
1367 1920 4.131088 GGCTCACCGAGGACGACC 62.131 72.222 0.00 0.00 42.66 4.79
1424 2011 7.254966 GGCACATCTATCAGATCTATACCTACG 60.255 44.444 0.00 0.00 31.32 3.51
1451 2170 2.650602 ACTGCACAAAAACGCGCG 60.651 55.556 30.96 30.96 0.00 6.86
1563 2282 0.952497 ACGTGCTGCCAGATGAAGTG 60.952 55.000 0.00 0.00 0.00 3.16
1731 2453 2.580155 TTTGTGGTCCCCAGCTGCAA 62.580 55.000 8.66 2.11 32.34 4.08
1802 2524 3.199677 TGTTGTCTTTAACTGGGTGACG 58.800 45.455 0.00 0.00 0.00 4.35
1843 2565 3.119388 AGTTGACCATTCATGCATTTCGG 60.119 43.478 0.00 0.00 0.00 4.30
1867 2589 2.860679 TGGTCCACAGGTAGGTATCCTA 59.139 50.000 0.00 0.00 34.61 2.94
1890 2612 7.530426 ACAACTAAGCATGGAGAAAGAAAAT 57.470 32.000 0.00 0.00 0.00 1.82
2000 2856 4.718961 AGTTTGGCCACATATGTCTATCC 58.281 43.478 3.88 5.43 0.00 2.59
2068 2937 2.353269 ACTCTCGAGCTACTTGTGATCG 59.647 50.000 7.81 0.00 34.80 3.69
2218 4665 4.365899 TCAATGTGAGTTACGACGCTAT 57.634 40.909 0.00 0.00 0.00 2.97
2225 4672 5.288472 TGTCATCGATTCAATGTGAGTTACG 59.712 40.000 0.00 0.00 0.00 3.18
2260 4729 7.852263 AGCTACCTAAACAGAACAATCACTAT 58.148 34.615 0.00 0.00 0.00 2.12
2261 4730 7.178628 AGAGCTACCTAAACAGAACAATCACTA 59.821 37.037 0.00 0.00 0.00 2.74
2264 4733 6.360370 AGAGCTACCTAAACAGAACAATCA 57.640 37.500 0.00 0.00 0.00 2.57
2315 4788 4.733725 TGGAAGGGGGACGGGGAG 62.734 72.222 0.00 0.00 0.00 4.30
2321 4815 1.609794 ACGAGAGTGGAAGGGGGAC 60.610 63.158 0.00 0.00 46.97 4.46
2353 4847 3.672295 GAGCAAGGGAGTGCCGAGG 62.672 68.421 0.00 0.00 46.14 4.63
2360 4854 3.334054 GCTGGGGAGCAAGGGAGT 61.334 66.667 0.00 0.00 34.41 3.85
2377 4872 3.866582 GGAGGATGTGGCGAGGGG 61.867 72.222 0.00 0.00 0.00 4.79
2392 5142 1.745890 CCAACACGAGTGGACTGGA 59.254 57.895 8.19 0.00 33.46 3.86
2427 5177 2.359975 GGACAACCAAGGAGGGCG 60.360 66.667 0.00 0.00 43.89 6.13
2504 5254 0.965439 GATGCTCCTAGACGATGCCT 59.035 55.000 0.00 0.00 0.00 4.75
2566 5316 1.354705 GGTCAAAGTAAGGGAAGGGCT 59.645 52.381 0.00 0.00 0.00 5.19
2612 5374 2.079158 ACAATCCAGAATGTCAGTGCG 58.921 47.619 0.00 0.00 0.00 5.34
2652 5414 4.586001 ACAAATCTGCCACAAGAAGTCATT 59.414 37.500 0.00 0.00 0.00 2.57
2667 5429 7.484007 GCAACATCTATTCTGAACACAAATCTG 59.516 37.037 0.00 0.00 0.00 2.90
2668 5430 7.362401 GGCAACATCTATTCTGAACACAAATCT 60.362 37.037 0.00 0.00 0.00 2.40
2704 5466 3.889815 TCGGAAAGAATGAATCTGCCAT 58.110 40.909 0.00 0.00 38.79 4.40
2720 5482 0.309922 GGCGTAGATCGTCATCGGAA 59.690 55.000 0.00 0.00 44.22 4.30
2751 5513 1.139853 GGATGAGTGAAAGCGGAGGAT 59.860 52.381 0.00 0.00 0.00 3.24
2762 5524 1.355381 ACAATGCCCAAGGATGAGTGA 59.645 47.619 0.00 0.00 0.00 3.41
2775 5537 1.518774 CCCAAGGATGCACAATGCC 59.481 57.895 0.00 0.00 44.23 4.40
2815 5607 0.186873 CCATAGGCCCAGGAGCAAAT 59.813 55.000 0.00 0.00 0.00 2.32
2860 5652 3.058160 GCCTGAGCAACACCGCAT 61.058 61.111 0.00 0.00 39.53 4.73
2864 5656 3.368571 GGCAGCCTGAGCAACACC 61.369 66.667 3.29 0.00 43.56 4.16
2874 5666 1.304713 CAAACATCAGGGGCAGCCT 60.305 57.895 12.43 0.00 0.00 4.58
2890 5682 1.534697 GAGTGTTGGTGGGTCCCAA 59.465 57.895 13.78 0.00 42.16 4.12
2957 5749 5.583495 GAGCACATTAATGTAGACGAGACT 58.417 41.667 20.39 8.77 39.39 3.24
3064 5858 0.467384 CTAGTCCAGGAGCATGTGGG 59.533 60.000 0.00 0.00 34.27 4.61
3081 5875 3.561143 ACAAACATGTTGACCAAGGCTA 58.439 40.909 12.82 0.00 0.00 3.93
3156 5950 1.609783 GGGATGGTCAGTGAAGGGG 59.390 63.158 0.00 0.00 0.00 4.79
3163 5957 1.903877 CTTGAGCGGGGATGGTCAGT 61.904 60.000 0.00 0.00 45.98 3.41
3186 5984 0.693049 GGCTTTGGGAGAGGAGTGAA 59.307 55.000 0.00 0.00 0.00 3.18
3215 6013 3.391296 CCCTAGAGACTAGAGAGCTCTGT 59.609 52.174 23.91 20.93 40.71 3.41
3289 6087 0.036388 AGCAACGACGGTGAATCCAT 60.036 50.000 18.96 0.00 35.57 3.41
3316 6114 1.522092 CATGCAGGTCGCCCTCTTA 59.478 57.895 0.00 0.00 39.89 2.10
3333 6131 3.569701 GGAAAACATGAAGGTCAGAAGCA 59.430 43.478 0.00 0.00 0.00 3.91
3383 6181 0.391263 GCGGGGGTTGTACAGAGAAG 60.391 60.000 0.00 0.00 0.00 2.85
3384 6182 0.834687 AGCGGGGGTTGTACAGAGAA 60.835 55.000 0.00 0.00 0.00 2.87
3389 6187 3.324108 GGGAGCGGGGGTTGTACA 61.324 66.667 0.00 0.00 0.00 2.90
3417 6215 1.488393 GGAAGAAGCAGTATCCAGGCT 59.512 52.381 0.00 0.00 40.14 4.58
3469 6267 0.813610 TGTGTTCTTCCACCACAGCG 60.814 55.000 0.00 0.00 34.37 5.18
3480 6278 1.999648 ACCATGCACCATGTGTTCTT 58.000 45.000 0.00 0.00 39.94 2.52
3546 6345 1.352622 AACACAAGGACAGAGGCCCA 61.353 55.000 0.00 0.00 0.00 5.36
3554 6353 7.330946 CGATCTTTAGTTGATAACACAAGGACA 59.669 37.037 0.00 0.00 0.00 4.02
3556 6355 7.608153 TCGATCTTTAGTTGATAACACAAGGA 58.392 34.615 0.00 0.00 0.00 3.36
3563 6362 8.649973 ATGAACCTCGATCTTTAGTTGATAAC 57.350 34.615 0.00 0.00 0.00 1.89
3597 6398 3.356290 CGAGATGTGGGGAAGGAAAAAT 58.644 45.455 0.00 0.00 0.00 1.82
3636 6437 1.011968 GCATAGGTCGTGTGCGTTGA 61.012 55.000 0.00 0.00 39.49 3.18
3644 6445 2.024918 GCCCATTGCATAGGTCGTG 58.975 57.895 4.46 0.00 40.77 4.35
3709 6510 0.325860 AGGGCCCACAACTACCGATA 60.326 55.000 27.56 0.00 0.00 2.92
3729 6532 7.339482 GGTCATAGAAGTTAAAATCTCCCACT 58.661 38.462 0.00 0.00 0.00 4.00
3775 7712 1.875963 GTCGGTGGGCATTGAAGTG 59.124 57.895 0.00 0.00 0.00 3.16
3838 7775 2.280823 GACGGTTGCGGAGAGGTAGG 62.281 65.000 0.00 0.00 0.00 3.18
3849 7786 4.491676 TCATTAAGTGTAGAGACGGTTGC 58.508 43.478 0.00 0.00 0.00 4.17
3851 7788 7.383687 TGATTTCATTAAGTGTAGAGACGGTT 58.616 34.615 0.00 0.00 0.00 4.44
3867 7805 3.106827 GGGTGGGGTTCATGATTTCATT 58.893 45.455 0.00 0.00 33.61 2.57
3960 7913 0.038526 GTGACAGTGGACGTAGGTGG 60.039 60.000 0.00 0.00 0.00 4.61
3966 7919 2.694829 GAAGGCGTGACAGTGGACGT 62.695 60.000 15.72 0.00 37.89 4.34
3968 7921 2.022129 CGAAGGCGTGACAGTGGAC 61.022 63.158 0.00 0.00 0.00 4.02
4040 7993 2.227388 CCCATTGCTCACTGAAACAGAC 59.773 50.000 5.76 0.00 35.18 3.51
4045 7998 1.962807 CCAACCCATTGCTCACTGAAA 59.037 47.619 0.00 0.00 34.17 2.69
4157 8129 1.306141 TTGAGCCCACTCCGGATCT 60.306 57.895 3.57 0.00 42.74 2.75
4181 8153 5.488341 TCAGGGTATTTGAGCTACTTTGAC 58.512 41.667 0.00 0.00 0.00 3.18
4188 8160 5.366477 TGATGACATCAGGGTATTTGAGCTA 59.634 40.000 14.24 0.00 33.59 3.32
4212 8184 2.884012 TCGTGATGTGGCAGTTTTTGAT 59.116 40.909 0.00 0.00 0.00 2.57
4217 8189 0.889186 GGGTCGTGATGTGGCAGTTT 60.889 55.000 0.00 0.00 0.00 2.66
4284 8256 1.203523 CGAGGGAGAACACAAGAGGAG 59.796 57.143 0.00 0.00 0.00 3.69
4293 8265 0.531974 GTGTTGCACGAGGGAGAACA 60.532 55.000 0.00 0.00 0.00 3.18
4295 8267 0.033504 GAGTGTTGCACGAGGGAGAA 59.966 55.000 0.00 0.00 39.64 2.87
4335 8308 4.138290 TGTACCACGAAAAATCCACACAT 58.862 39.130 0.00 0.00 0.00 3.21
4349 8322 1.566404 TATCTTGCGCATGTACCACG 58.434 50.000 21.14 0.00 0.00 4.94
4356 8329 4.106909 TGCAAAAGAATATCTTGCGCATG 58.893 39.130 12.75 15.07 46.70 4.06
4358 8331 3.846423 TGCAAAAGAATATCTTGCGCA 57.154 38.095 5.66 5.66 46.70 6.09
4360 8333 5.002840 CGAGTTTGCAAAAGAATATCTTGCG 59.997 40.000 14.67 2.38 46.70 4.85
4390 8363 2.727123 TGGAAGAAGTTTGAGTGCCA 57.273 45.000 0.00 0.00 0.00 4.92
4393 8366 2.229784 GGGCATGGAAGAAGTTTGAGTG 59.770 50.000 0.00 0.00 0.00 3.51
4507 8480 6.267014 CCCGAAAGAGGATGGTAGAAGTAATA 59.733 42.308 0.00 0.00 0.00 0.98
4510 8483 3.958798 CCCGAAAGAGGATGGTAGAAGTA 59.041 47.826 0.00 0.00 0.00 2.24
4524 8497 2.632377 GACATCTTCATGCCCGAAAGA 58.368 47.619 0.00 0.00 32.57 2.52
4528 8501 1.143838 CCGACATCTTCATGCCCGA 59.856 57.895 0.00 0.00 33.54 5.14
4568 8541 0.890542 TGTGTGTGCCATGAAGAGCC 60.891 55.000 0.00 0.00 0.00 4.70
4634 8629 2.270527 GCCTTGAGGTCAGAGCCC 59.729 66.667 0.00 0.00 37.57 5.19
4636 8631 0.036022 AACTGCCTTGAGGTCAGAGC 59.964 55.000 20.71 0.00 39.83 4.09
4643 8638 2.958355 TCCAAAGAAAACTGCCTTGAGG 59.042 45.455 0.00 0.00 38.53 3.86
4727 8722 6.648192 CAATAAGATTGAGGAGAAGTGACCT 58.352 40.000 0.00 0.00 39.41 3.85
4774 8770 2.215907 CTGAATAGTCAGCCTCGTGG 57.784 55.000 7.33 0.00 44.74 4.94
4786 8782 7.541162 TGAAGGATTTTGTTGATGCTGAATAG 58.459 34.615 0.00 0.00 0.00 1.73
4792 8788 4.676196 GCGATGAAGGATTTTGTTGATGCT 60.676 41.667 0.00 0.00 0.00 3.79
4802 8798 1.133976 CAGGAGGGCGATGAAGGATTT 60.134 52.381 0.00 0.00 0.00 2.17
4803 8799 0.471617 CAGGAGGGCGATGAAGGATT 59.528 55.000 0.00 0.00 0.00 3.01
4891 8893 0.716108 CTCACGACAACATCTTCCGC 59.284 55.000 0.00 0.00 0.00 5.54
4893 8895 3.026630 TGACTCACGACAACATCTTCC 57.973 47.619 0.00 0.00 0.00 3.46
4923 8925 0.549950 ATGAATGAGTGGCTCCTGGG 59.450 55.000 0.00 0.00 0.00 4.45
4933 8935 5.733620 AATGCACAAGGAAATGAATGAGT 57.266 34.783 0.00 0.00 0.00 3.41
4941 8943 5.928264 GTCTGCTAAAAATGCACAAGGAAAT 59.072 36.000 0.00 0.00 36.37 2.17
5046 9048 1.078918 TTGAGCACCATCTCCAGCG 60.079 57.895 0.00 0.00 32.22 5.18
5162 9188 1.863155 ATCCAATTGCCGGGGACACT 61.863 55.000 2.18 0.00 32.60 3.55
5231 9258 6.460399 GCTCGAGAACATAGACAACTAGGATT 60.460 42.308 18.75 0.00 34.90 3.01
5243 9270 3.550561 GATGAGTCGCTCGAGAACATAG 58.449 50.000 18.75 0.00 32.35 2.23
5258 9285 0.107508 CACCAATGGCGAGGATGAGT 60.108 55.000 0.00 0.00 0.00 3.41
5289 9316 1.749258 GACGAGGGGATGTTTGGCC 60.749 63.158 0.00 0.00 0.00 5.36
5298 9326 0.043637 ACAATAAGGGGACGAGGGGA 59.956 55.000 0.00 0.00 0.00 4.81
5346 9375 2.479049 GCTAGTGATTGTCGCGAAGGTA 60.479 50.000 12.06 0.00 30.95 3.08
5382 9411 3.087031 AGGAATGAACATGCACTTGGAG 58.913 45.455 0.00 0.00 0.00 3.86
5414 9443 4.142315 CCAATTGTTCGGCAATCTCTGATT 60.142 41.667 4.43 0.00 46.29 2.57
5434 9463 1.076632 AACCAAACACCGAGGCCAA 60.077 52.632 5.01 0.00 0.00 4.52
5493 9523 0.326264 ATGAGCTTGTGGGTGGAGAC 59.674 55.000 0.00 0.00 0.00 3.36
5520 9550 1.411977 AGCAATGAGAGGGACGAGATG 59.588 52.381 0.00 0.00 0.00 2.90
5526 9556 0.247736 ACACGAGCAATGAGAGGGAC 59.752 55.000 0.00 0.00 0.00 4.46
5549 9579 3.009033 ACAGCACCTAGTGAGCCATTTTA 59.991 43.478 0.00 0.00 35.23 1.52
5568 9598 0.466189 AGGAAACAGGTGTGCCACAG 60.466 55.000 0.00 0.00 35.86 3.66
5603 9633 2.322830 GGAGGGGCGTCGACAAAAC 61.323 63.158 17.16 2.74 0.00 2.43
5621 10166 4.813161 CAGTAGGTGGTCTTCAATGCATAG 59.187 45.833 0.00 0.00 0.00 2.23
5623 10168 3.614092 CAGTAGGTGGTCTTCAATGCAT 58.386 45.455 0.00 0.00 0.00 3.96
5646 10191 2.493675 TGCATGACCACAGAGAGACTAC 59.506 50.000 0.00 0.00 0.00 2.73
5686 10233 4.939255 ACATCTTCCCCAACTCATCATTT 58.061 39.130 0.00 0.00 0.00 2.32
5687 10234 4.018141 TGACATCTTCCCCAACTCATCATT 60.018 41.667 0.00 0.00 0.00 2.57
5697 10245 1.902508 GTGAGAGTGACATCTTCCCCA 59.097 52.381 0.00 0.00 0.00 4.96
5718 10266 1.445942 CGGTGGTTCGATGCCCTAT 59.554 57.895 4.38 0.00 0.00 2.57
5724 10272 0.305617 CATGATGCGGTGGTTCGATG 59.694 55.000 0.00 0.00 0.00 3.84
5725 10273 1.439353 GCATGATGCGGTGGTTCGAT 61.439 55.000 0.00 0.00 31.71 3.59
5749 10297 0.953471 CCATGAACGAGGCACCGAAA 60.953 55.000 6.32 0.00 0.00 3.46
5818 10366 3.150949 CGCTAGATCATGGGGGCA 58.849 61.111 0.00 0.00 0.00 5.36
5863 10413 3.009033 TGATGACGGAAGAACCAAAGGAT 59.991 43.478 0.00 0.00 38.90 3.24
5879 10429 3.190874 GAGATGGGAAGTCGTTGATGAC 58.809 50.000 0.00 0.00 39.21 3.06
5886 10436 2.722201 GGCGGAGATGGGAAGTCGT 61.722 63.158 0.00 0.00 0.00 4.34
5902 10452 0.521735 GGAAATGTTGTGACGGAGGC 59.478 55.000 0.00 0.00 0.00 4.70
5905 10455 1.222300 CGTGGAAATGTTGTGACGGA 58.778 50.000 0.00 0.00 0.00 4.69
5909 10459 2.147958 GCTACCGTGGAAATGTTGTGA 58.852 47.619 0.00 0.00 0.00 3.58
5924 10474 3.758554 ACCACATCAAAAGACATGCTACC 59.241 43.478 0.00 0.00 0.00 3.18
5974 10526 1.824760 CATGGGCGTGGATGCATGA 60.825 57.895 11.06 0.00 36.28 3.07
6006 10558 2.511600 GTGGCAATAGGCGCGTCT 60.512 61.111 20.79 20.79 46.16 4.18
6011 10563 0.101040 CATTGTGGTGGCAATAGGCG 59.899 55.000 0.00 0.00 46.16 5.52
6028 10580 1.075482 CAAGGCACACCACCTCCAT 59.925 57.895 0.00 0.00 36.14 3.41
6062 10614 0.846015 TAGGCAAGGGTGATCCATGG 59.154 55.000 4.97 4.97 38.24 3.66
6076 10628 4.856509 AGACAGACTGTGTAGTATAGGCA 58.143 43.478 14.14 0.00 40.56 4.75
6086 10638 1.620819 GGATGGTGAGACAGACTGTGT 59.379 52.381 14.14 9.33 44.49 3.72
6100 10652 6.444704 TCTCCTAAATGTTCTAGAGGATGGT 58.555 40.000 0.00 0.00 35.77 3.55
6119 10671 4.019174 CACCTTGGCATTACAAATCTCCT 58.981 43.478 0.00 0.00 0.00 3.69
6126 10678 1.885887 GTGAGCACCTTGGCATTACAA 59.114 47.619 0.00 0.00 35.83 2.41
6153 10706 5.245531 CACAATAGTAGAAAAGGGAGCACA 58.754 41.667 0.00 0.00 0.00 4.57
6154 10707 4.636206 CCACAATAGTAGAAAAGGGAGCAC 59.364 45.833 0.00 0.00 0.00 4.40
6169 10723 5.313520 TGATGTTGATGTTGCCACAATAG 57.686 39.130 0.00 0.00 36.16 1.73
6178 10732 8.185505 TCATACATGATGTTGATGTTGATGTTG 58.814 33.333 2.29 0.00 35.62 3.33
6181 10735 8.784043 AGATCATACATGATGTTGATGTTGATG 58.216 33.333 20.13 9.90 46.84 3.07
6219 10797 4.622260 AGCACTGCACCCAAAATTTTAT 57.378 36.364 2.44 0.00 0.00 1.40
6222 10800 2.802774 CGAAGCACTGCACCCAAAATTT 60.803 45.455 3.30 0.00 0.00 1.82
6246 10824 0.763035 ACGTTTCACTAGGGCAAGGT 59.237 50.000 0.00 0.00 0.00 3.50
6260 10838 0.751643 AGCCAAGGCACTGAACGTTT 60.752 50.000 14.40 0.00 44.88 3.60
6262 10840 1.893808 CAGCCAAGGCACTGAACGT 60.894 57.895 14.40 0.00 44.88 3.99
6269 10847 1.300388 CAAGCAACAGCCAAGGCAC 60.300 57.895 14.40 0.00 44.88 5.01
6296 10874 6.042208 ACATCAGAGCTATAGGTTTTAGGGTC 59.958 42.308 5.80 0.00 0.00 4.46
6298 10876 6.426646 ACATCAGAGCTATAGGTTTTAGGG 57.573 41.667 5.80 0.00 0.00 3.53
6305 10884 4.080356 TGGCAAAACATCAGAGCTATAGGT 60.080 41.667 3.58 3.58 0.00 3.08
6339 10918 8.236586 GGAAAGCCCAAATGAACATTTTAATTC 58.763 33.333 9.63 9.68 38.84 2.17
6480 11061 3.057946 GTGGTTTGCAAGAAGAGATCACC 60.058 47.826 0.00 1.45 0.00 4.02
6498 11079 6.483640 GTCTTGAAAAACTAGTCTCATGTGGT 59.516 38.462 0.00 0.00 0.00 4.16
6504 11085 6.017109 GGCATTGTCTTGAAAAACTAGTCTCA 60.017 38.462 0.00 0.00 0.00 3.27
6527 11109 1.564348 TGGGATCCTTTCTACCTTGGC 59.436 52.381 12.58 0.00 0.00 4.52
6528 11110 4.166919 AGATTGGGATCCTTTCTACCTTGG 59.833 45.833 12.58 0.00 32.44 3.61
6566 11149 2.084546 GTCTGGTGGTGTAATGCCTTC 58.915 52.381 0.00 0.00 0.00 3.46
6578 11161 0.987294 AGATGTCAAGGGTCTGGTGG 59.013 55.000 0.00 0.00 0.00 4.61
6613 11196 4.406003 GTCACAACCTATGTATCCTGACCT 59.594 45.833 0.00 0.00 41.46 3.85
6681 11264 9.464714 GAATTTTGATCTCCATGATTGAATGAG 57.535 33.333 0.00 0.00 35.14 2.90
6712 11295 4.082787 CCAATTCCACCAATATACATCGCC 60.083 45.833 0.00 0.00 0.00 5.54
6821 11408 3.762288 TGTGACACCTCGATTAGTTAGCT 59.238 43.478 2.45 0.00 0.00 3.32
6839 11426 2.906389 AGAAGCAGTAGAATGGGTGTGA 59.094 45.455 0.00 0.00 0.00 3.58
6855 11442 3.312697 CCCGCTATCAAAACCTAAGAAGC 59.687 47.826 0.00 0.00 0.00 3.86
6894 11481 0.692419 ATGACGGGGAGCTCCTCATT 60.692 55.000 31.90 18.43 35.80 2.57
7006 11593 2.436173 TGACAACAGTGTGGACCACATA 59.564 45.455 29.45 5.49 46.32 2.29
7014 11601 1.134401 AGAGTGGTGACAACAGTGTGG 60.134 52.381 5.31 0.00 46.06 4.17
7060 11665 1.739562 GGCAGCTCCACTCAAGTCG 60.740 63.158 0.00 0.00 34.01 4.18
7066 11671 3.123620 CGCTTGGCAGCTCCACTC 61.124 66.667 4.59 0.39 46.55 3.51
7082 11687 1.800805 CAGGTCCATTATAGCAGCCG 58.199 55.000 0.00 0.00 0.00 5.52
7188 11793 3.070015 TCTGCAGCAATTCGATCCTATGA 59.930 43.478 9.47 0.00 0.00 2.15
7295 11901 4.196193 ACCAAGACGTCACTGAATTTCAA 58.804 39.130 19.50 0.00 0.00 2.69
7309 11919 1.148310 CTGCCACAACTACCAAGACG 58.852 55.000 0.00 0.00 0.00 4.18
7311 11921 0.764890 AGCTGCCACAACTACCAAGA 59.235 50.000 0.00 0.00 0.00 3.02
7407 12017 6.441093 TCATGACCTTGTTATTTGATCAGC 57.559 37.500 0.00 0.00 0.00 4.26
7416 12026 5.120208 CGTTCGAAGTTCATGACCTTGTTAT 59.880 40.000 10.59 0.00 0.00 1.89
7455 12065 1.410517 CGTCATAGACTGGCACATCCT 59.589 52.381 0.00 0.00 38.20 3.24
7467 12077 2.612672 GTGATCCAGTCGACGTCATAGA 59.387 50.000 17.16 1.54 0.00 1.98
7525 12142 3.700538 TCATTTAGCTCCCATTGTGCTT 58.299 40.909 0.00 0.00 40.82 3.91
7578 12195 2.832838 TGCAAGGACCTCAATCTCCTA 58.167 47.619 0.00 0.00 35.72 2.94
7650 12317 7.672983 ACACATATAATCCCATCGTTGATTC 57.327 36.000 0.00 0.00 33.46 2.52
7692 13945 4.310022 TTTTTGACCATACCCCCTACTG 57.690 45.455 0.00 0.00 0.00 2.74
7800 14053 3.521560 GGCTGTCATGTTCATCGTCTAA 58.478 45.455 0.00 0.00 0.00 2.10
7816 14069 0.676782 GTTCTTATGGTGGCGGCTGT 60.677 55.000 11.43 0.00 0.00 4.40
7822 14075 4.675510 CATGTGATTGTTCTTATGGTGGC 58.324 43.478 0.00 0.00 0.00 5.01
7829 14082 1.396648 CGCCGCATGTGATTGTTCTTA 59.603 47.619 8.11 0.00 0.00 2.10
7901 14154 4.994282 TCTTGTTCTAGGTGTGGTCTCTA 58.006 43.478 0.00 0.00 0.00 2.43
7932 14186 4.260990 CCAAAGGCGATATTCGTTGCATTA 60.261 41.667 0.00 0.00 42.81 1.90
7968 14222 2.223641 ACATCTTTGTGTTGCTGTGCAG 60.224 45.455 0.00 0.00 35.57 4.41
8038 14299 1.350019 GTAATATTGGGGTCGGGAGGG 59.650 57.143 0.00 0.00 0.00 4.30
8043 14304 5.480772 ACTGATCTAGTAATATTGGGGTCGG 59.519 44.000 0.00 0.00 38.04 4.79
8236 14497 8.275187 TGGTACCACCATAGAATCAATTATCT 57.725 34.615 11.60 0.00 44.79 1.98
8271 14532 8.940397 TTCATATACTCCATATGTCTGTGAGA 57.060 34.615 11.48 0.00 44.73 3.27
8278 14539 7.482169 TGTCCCTTCATATACTCCATATGTC 57.518 40.000 1.24 0.00 44.73 3.06
8284 14545 3.909995 CCCATGTCCCTTCATATACTCCA 59.090 47.826 0.00 0.00 0.00 3.86
8319 14580 1.037493 ACTCAACACGTCTGCCACTA 58.963 50.000 0.00 0.00 0.00 2.74
8320 14581 0.178068 AACTCAACACGTCTGCCACT 59.822 50.000 0.00 0.00 0.00 4.00


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.