Multiple sequence alignment - TraesCS6D01G014000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G014000 chr6D 100.000 4909 0 0 1 4909 5913769 5908861 0.000000e+00 9066.0
1 TraesCS6D01G014000 chr6D 87.311 1324 130 21 2371 3686 5889068 5887775 0.000000e+00 1480.0
2 TraesCS6D01G014000 chr6D 88.409 880 83 16 2248 3122 5948276 5947411 0.000000e+00 1042.0
3 TraesCS6D01G014000 chr6D 87.697 699 71 5 3154 3840 5947422 5946727 0.000000e+00 800.0
4 TraesCS6D01G014000 chr6D 82.234 591 69 21 3727 4297 5887774 5887200 1.240000e-130 477.0
5 TraesCS6D01G014000 chr6D 91.104 326 27 2 4282 4607 5946299 5945976 1.620000e-119 440.0
6 TraesCS6D01G014000 chr6D 86.957 322 40 2 1866 2186 5902578 5902258 1.300000e-95 361.0
7 TraesCS6D01G014000 chr6B 93.347 2360 114 19 756 3102 11261283 11258954 0.000000e+00 3448.0
8 TraesCS6D01G014000 chr6B 84.768 1464 151 29 2316 3762 11242198 11240790 0.000000e+00 1402.0
9 TraesCS6D01G014000 chr6B 92.842 950 52 7 3135 4077 11258566 11257626 0.000000e+00 1363.0
10 TraesCS6D01G014000 chr6B 77.361 1948 322 73 1730 3613 11210517 11208625 0.000000e+00 1044.0
11 TraesCS6D01G014000 chr6B 92.550 604 33 8 133 724 11262120 11261517 0.000000e+00 856.0
12 TraesCS6D01G014000 chr6B 90.769 325 28 2 4283 4607 11257644 11257322 2.710000e-117 433.0
13 TraesCS6D01G014000 chr6B 78.211 693 117 27 2305 2976 174567296 174567975 3.540000e-111 412.0
14 TraesCS6D01G014000 chr6B 77.489 693 136 14 2298 2976 97817390 97818076 9.900000e-107 398.0
15 TraesCS6D01G014000 chr6B 83.991 431 52 9 1781 2204 174566754 174567174 9.900000e-107 398.0
16 TraesCS6D01G014000 chr6B 77.381 672 119 19 2961 3614 97818270 97818926 7.760000e-98 368.0
17 TraesCS6D01G014000 chr6B 89.850 266 24 3 1923 2186 11242480 11242216 6.090000e-89 339.0
18 TraesCS6D01G014000 chr6B 79.958 474 72 16 3154 3614 98519847 98520310 1.320000e-85 327.0
19 TraesCS6D01G014000 chr6B 76.377 690 110 28 2961 3614 98607177 98607849 6.130000e-84 322.0
20 TraesCS6D01G014000 chr6B 79.536 474 74 16 3154 3614 98408654 98409117 2.850000e-82 316.0
21 TraesCS6D01G014000 chr6B 79.536 474 74 16 3154 3614 98451856 98452319 2.850000e-82 316.0
22 TraesCS6D01G014000 chr6B 76.562 576 104 23 1017 1577 97816239 97816798 2.240000e-73 287.0
23 TraesCS6D01G014000 chr6B 77.677 439 72 17 1017 1444 97794864 97795287 1.360000e-60 244.0
24 TraesCS6D01G014000 chr6B 78.738 301 48 11 2722 3011 98408155 98408450 2.330000e-43 187.0
25 TraesCS6D01G014000 chr6B 78.893 289 45 12 2734 3011 98518818 98519101 1.090000e-41 182.0
26 TraesCS6D01G014000 chr6B 78.451 297 48 11 2722 3011 98451365 98451652 3.900000e-41 180.0
27 TraesCS6D01G014000 chr6B 79.771 262 42 9 2722 2976 98606886 98607143 3.900000e-41 180.0
28 TraesCS6D01G014000 chr6B 76.471 340 72 3 2310 2642 98606549 98606887 1.400000e-40 178.0
29 TraesCS6D01G014000 chr6A 91.699 2349 165 22 748 3083 5297487 5295156 0.000000e+00 3230.0
30 TraesCS6D01G014000 chr6A 96.231 796 21 4 3150 3940 5294915 5294124 0.000000e+00 1295.0
31 TraesCS6D01G014000 chr6A 91.382 615 25 13 133 724 5298300 5297691 0.000000e+00 817.0
32 TraesCS6D01G014000 chr6A 79.966 584 95 13 1749 2325 5239825 5239257 1.270000e-110 411.0
33 TraesCS6D01G014000 chrUn 79.211 1419 234 36 1730 3112 231207607 231209000 0.000000e+00 929.0
34 TraesCS6D01G014000 chrUn 81.136 440 74 3 1773 2209 21369074 21368641 1.310000e-90 344.0
35 TraesCS6D01G014000 chrUn 77.657 461 77 18 2175 2617 170381562 170381110 1.750000e-64 257.0
36 TraesCS6D01G014000 chrUn 77.657 461 77 18 2175 2617 174089651 174090103 1.750000e-64 257.0
37 TraesCS6D01G014000 chrUn 77.657 461 77 18 2175 2617 255569484 255569936 1.750000e-64 257.0
38 TraesCS6D01G014000 chrUn 80.071 281 32 16 2722 2985 21365083 21364810 2.330000e-43 187.0
39 TraesCS6D01G014000 chr4B 94.565 92 5 0 1 92 360334332 360334241 5.120000e-30 143.0
40 TraesCS6D01G014000 chr4B 93.478 92 6 0 1 92 314899176 314899085 2.380000e-28 137.0
41 TraesCS6D01G014000 chr5B 95.455 88 4 0 1 88 390129150 390129237 1.840000e-29 141.0
42 TraesCS6D01G014000 chr4D 93.478 92 6 0 1 92 492046263 492046354 2.380000e-28 137.0
43 TraesCS6D01G014000 chr3D 85.714 133 16 2 1 133 128895714 128895843 2.380000e-28 137.0
44 TraesCS6D01G014000 chr3B 85.714 133 16 3 1 133 761193745 761193874 2.380000e-28 137.0
45 TraesCS6D01G014000 chr2D 93.478 92 6 0 1 92 194655058 194655149 2.380000e-28 137.0
46 TraesCS6D01G014000 chr2D 86.207 116 13 2 3 118 241636042 241635930 6.670000e-24 122.0
47 TraesCS6D01G014000 chr7A 85.593 118 14 3 1 118 55937549 55937435 2.400000e-23 121.0
48 TraesCS6D01G014000 chr4A 85.714 70 7 2 65 134 743007069 743007003 2.450000e-08 71.3
49 TraesCS6D01G014000 chr4A 85.714 70 7 2 65 134 743030177 743030111 2.450000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G014000 chr6D 5908861 5913769 4908 True 9066.000000 9066 100.000000 1 4909 1 chr6D.!!$R2 4908
1 TraesCS6D01G014000 chr6D 5887200 5889068 1868 True 978.500000 1480 84.772500 2371 4297 2 chr6D.!!$R3 1926
2 TraesCS6D01G014000 chr6D 5945976 5948276 2300 True 760.666667 1042 89.070000 2248 4607 3 chr6D.!!$R4 2359
3 TraesCS6D01G014000 chr6B 11257322 11262120 4798 True 1525.000000 3448 92.377000 133 4607 4 chr6B.!!$R3 4474
4 TraesCS6D01G014000 chr6B 11208625 11210517 1892 True 1044.000000 1044 77.361000 1730 3613 1 chr6B.!!$R1 1883
5 TraesCS6D01G014000 chr6B 11240790 11242480 1690 True 870.500000 1402 87.309000 1923 3762 2 chr6B.!!$R2 1839
6 TraesCS6D01G014000 chr6B 174566754 174567975 1221 False 405.000000 412 81.101000 1781 2976 2 chr6B.!!$F7 1195
7 TraesCS6D01G014000 chr6B 97816239 97818926 2687 False 351.000000 398 77.144000 1017 3614 3 chr6B.!!$F2 2597
8 TraesCS6D01G014000 chr6B 98518818 98520310 1492 False 254.500000 327 79.425500 2734 3614 2 chr6B.!!$F5 880
9 TraesCS6D01G014000 chr6B 98408155 98409117 962 False 251.500000 316 79.137000 2722 3614 2 chr6B.!!$F3 892
10 TraesCS6D01G014000 chr6B 98451365 98452319 954 False 248.000000 316 78.993500 2722 3614 2 chr6B.!!$F4 892
11 TraesCS6D01G014000 chr6B 98606549 98607849 1300 False 226.666667 322 77.539667 2310 3614 3 chr6B.!!$F6 1304
12 TraesCS6D01G014000 chr6A 5294124 5298300 4176 True 1780.666667 3230 93.104000 133 3940 3 chr6A.!!$R2 3807
13 TraesCS6D01G014000 chr6A 5239257 5239825 568 True 411.000000 411 79.966000 1749 2325 1 chr6A.!!$R1 576
14 TraesCS6D01G014000 chrUn 231207607 231209000 1393 False 929.000000 929 79.211000 1730 3112 1 chrUn.!!$F2 1382
15 TraesCS6D01G014000 chrUn 21364810 21369074 4264 True 265.500000 344 80.603500 1773 2985 2 chrUn.!!$R2 1212

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
121 122 0.036388 TGCGCTACTGCTAGGCTTTT 60.036 50.000 9.73 0.0 36.97 2.27 F
844 1095 0.107800 CTGGGTCATCACTGCTCCTG 60.108 60.000 0.00 0.0 0.00 3.86 F
1010 1261 0.179062 CCTTCATTCCCTGCTCGGAG 60.179 60.000 0.00 0.0 32.13 4.63 F
1306 1563 1.303561 GGTGGATCCAGTTGCTGCA 60.304 57.895 16.81 0.0 35.97 4.41 F
2851 3194 0.389025 CAAAAGCCCTTGTGGTGGTC 59.611 55.000 0.00 0.0 36.04 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1306 1563 1.227853 GGTCGTCTTGCACACCCTT 60.228 57.895 0.00 0.0 0.00 3.95 R
2415 2738 0.394080 GCAGAGGCAAGGCAGATTCT 60.394 55.000 0.00 0.0 40.72 2.40 R
2620 2949 1.068588 CCCATTTGGCATCTGAGCATG 59.931 52.381 0.00 0.0 35.83 4.06 R
3259 5037 0.741221 GAGCACGGTGATGAAGGGAC 60.741 60.000 13.29 0.0 0.00 4.46 R
4761 7388 0.037447 GAAGCAGAGGTGGAAGCCTT 59.963 55.000 0.00 0.0 39.34 4.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 2.108566 CTCGCTGCTGCTAGCCAT 59.891 61.111 13.29 0.00 41.51 4.40
24 25 2.202974 TCGCTGCTGCTAGCCATG 60.203 61.111 13.29 3.63 41.51 3.66
25 26 2.513204 CGCTGCTGCTAGCCATGT 60.513 61.111 13.29 0.00 41.51 3.21
26 27 1.227350 CGCTGCTGCTAGCCATGTA 60.227 57.895 13.29 1.23 41.51 2.29
27 28 0.602106 CGCTGCTGCTAGCCATGTAT 60.602 55.000 13.29 0.00 41.51 2.29
28 29 1.337167 CGCTGCTGCTAGCCATGTATA 60.337 52.381 13.29 0.00 41.51 1.47
29 30 2.344950 GCTGCTGCTAGCCATGTATAG 58.655 52.381 13.29 1.59 41.51 1.31
30 31 2.344950 CTGCTGCTAGCCATGTATAGC 58.655 52.381 13.29 12.91 41.51 2.97
38 39 5.482908 GCTAGCCATGTATAGCAATAGTGT 58.517 41.667 17.23 0.00 43.17 3.55
39 40 5.349817 GCTAGCCATGTATAGCAATAGTGTG 59.650 44.000 17.23 0.00 43.17 3.82
40 41 4.645535 AGCCATGTATAGCAATAGTGTGG 58.354 43.478 0.00 0.00 0.00 4.17
41 42 3.753272 GCCATGTATAGCAATAGTGTGGG 59.247 47.826 0.00 0.00 0.00 4.61
42 43 4.746702 GCCATGTATAGCAATAGTGTGGGT 60.747 45.833 0.00 0.00 0.00 4.51
43 44 4.997395 CCATGTATAGCAATAGTGTGGGTC 59.003 45.833 0.00 0.00 0.00 4.46
44 45 5.454613 CCATGTATAGCAATAGTGTGGGTCA 60.455 44.000 0.00 0.00 0.00 4.02
45 46 5.276461 TGTATAGCAATAGTGTGGGTCAG 57.724 43.478 0.00 0.00 0.00 3.51
46 47 2.691409 TAGCAATAGTGTGGGTCAGC 57.309 50.000 0.00 0.00 0.00 4.26
47 48 0.692476 AGCAATAGTGTGGGTCAGCA 59.308 50.000 0.00 0.00 0.00 4.41
48 49 0.804989 GCAATAGTGTGGGTCAGCAC 59.195 55.000 0.00 0.00 35.98 4.40
49 50 1.078709 CAATAGTGTGGGTCAGCACG 58.921 55.000 0.00 0.00 40.26 5.34
50 51 0.673644 AATAGTGTGGGTCAGCACGC 60.674 55.000 0.00 0.00 40.26 5.34
51 52 2.835701 ATAGTGTGGGTCAGCACGCG 62.836 60.000 3.53 3.53 40.26 6.01
65 66 4.628160 CGCGCTACGGATACATGT 57.372 55.556 5.56 2.69 38.44 3.21
66 67 2.881441 CGCGCTACGGATACATGTT 58.119 52.632 2.30 0.00 38.44 2.71
67 68 2.040714 CGCGCTACGGATACATGTTA 57.959 50.000 2.30 0.00 38.44 2.41
68 69 1.976728 CGCGCTACGGATACATGTTAG 59.023 52.381 2.30 0.00 38.44 2.34
69 70 1.719780 GCGCTACGGATACATGTTAGC 59.280 52.381 14.03 14.03 0.00 3.09
70 71 2.607282 GCGCTACGGATACATGTTAGCT 60.607 50.000 19.25 0.00 0.00 3.32
71 72 2.980476 CGCTACGGATACATGTTAGCTG 59.020 50.000 19.25 11.80 0.00 4.24
72 73 3.550233 CGCTACGGATACATGTTAGCTGT 60.550 47.826 19.25 14.84 0.00 4.40
73 74 4.319984 CGCTACGGATACATGTTAGCTGTA 60.320 45.833 19.25 15.09 33.86 2.74
74 75 5.154932 GCTACGGATACATGTTAGCTGTAG 58.845 45.833 23.36 23.36 39.97 2.74
75 76 3.978687 ACGGATACATGTTAGCTGTAGC 58.021 45.455 2.30 0.00 42.49 3.58
86 87 3.920144 GCTGTAGCGTCGTATCAGT 57.080 52.632 11.77 0.00 0.00 3.41
88 89 2.906153 GCTGTAGCGTCGTATCAGTAG 58.094 52.381 11.77 0.00 0.00 2.57
89 90 2.906153 CTGTAGCGTCGTATCAGTAGC 58.094 52.381 0.00 0.00 0.00 3.58
90 91 1.259770 TGTAGCGTCGTATCAGTAGCG 59.740 52.381 0.00 0.00 0.00 4.26
91 92 0.234106 TAGCGTCGTATCAGTAGCGC 59.766 55.000 0.00 0.00 44.36 5.92
92 93 1.298116 GCGTCGTATCAGTAGCGCA 60.298 57.895 11.47 0.00 43.62 6.09
93 94 1.529883 GCGTCGTATCAGTAGCGCAC 61.530 60.000 11.47 5.97 43.62 5.34
94 95 0.928908 CGTCGTATCAGTAGCGCACC 60.929 60.000 11.47 0.00 0.00 5.01
95 96 0.099968 GTCGTATCAGTAGCGCACCA 59.900 55.000 11.47 0.00 0.00 4.17
96 97 0.812549 TCGTATCAGTAGCGCACCAA 59.187 50.000 11.47 0.00 0.00 3.67
97 98 1.202817 TCGTATCAGTAGCGCACCAAA 59.797 47.619 11.47 0.00 0.00 3.28
98 99 2.159156 TCGTATCAGTAGCGCACCAAAT 60.159 45.455 11.47 0.00 0.00 2.32
99 100 3.067040 TCGTATCAGTAGCGCACCAAATA 59.933 43.478 11.47 0.00 0.00 1.40
100 101 3.181774 CGTATCAGTAGCGCACCAAATAC 59.818 47.826 11.47 10.78 0.00 1.89
101 102 2.018542 TCAGTAGCGCACCAAATACC 57.981 50.000 11.47 0.00 0.00 2.73
102 103 1.553248 TCAGTAGCGCACCAAATACCT 59.447 47.619 11.47 0.00 0.00 3.08
103 104 1.665679 CAGTAGCGCACCAAATACCTG 59.334 52.381 11.47 0.00 0.00 4.00
104 105 0.377203 GTAGCGCACCAAATACCTGC 59.623 55.000 11.47 0.00 0.00 4.85
106 107 2.100216 CGCACCAAATACCTGCGC 59.900 61.111 0.00 0.00 46.34 6.09
107 108 2.398554 CGCACCAAATACCTGCGCT 61.399 57.895 9.73 0.00 46.34 5.92
108 109 1.087202 CGCACCAAATACCTGCGCTA 61.087 55.000 9.73 0.00 46.34 4.26
109 110 0.377203 GCACCAAATACCTGCGCTAC 59.623 55.000 9.73 0.00 0.00 3.58
110 111 2.012051 GCACCAAATACCTGCGCTACT 61.012 52.381 9.73 0.00 0.00 2.57
111 112 1.665679 CACCAAATACCTGCGCTACTG 59.334 52.381 9.73 0.00 0.00 2.74
112 113 0.657840 CCAAATACCTGCGCTACTGC 59.342 55.000 9.73 0.00 0.00 4.40
113 114 1.656652 CAAATACCTGCGCTACTGCT 58.343 50.000 9.73 0.00 36.97 4.24
114 115 2.483013 CCAAATACCTGCGCTACTGCTA 60.483 50.000 9.73 0.00 36.97 3.49
115 116 2.797156 CAAATACCTGCGCTACTGCTAG 59.203 50.000 9.73 0.00 36.97 3.42
116 117 0.962489 ATACCTGCGCTACTGCTAGG 59.038 55.000 9.73 7.65 42.81 3.02
117 118 1.735376 TACCTGCGCTACTGCTAGGC 61.735 60.000 9.73 0.00 41.70 3.93
118 119 2.790791 CCTGCGCTACTGCTAGGCT 61.791 63.158 9.73 0.00 35.51 4.58
119 120 1.142748 CTGCGCTACTGCTAGGCTT 59.857 57.895 9.73 0.00 36.97 4.35
120 121 0.460987 CTGCGCTACTGCTAGGCTTT 60.461 55.000 9.73 0.00 36.97 3.51
121 122 0.036388 TGCGCTACTGCTAGGCTTTT 60.036 50.000 9.73 0.00 36.97 2.27
122 123 1.087501 GCGCTACTGCTAGGCTTTTT 58.912 50.000 0.00 0.00 36.97 1.94
123 124 1.062733 GCGCTACTGCTAGGCTTTTTC 59.937 52.381 0.00 0.00 36.97 2.29
124 125 1.666189 CGCTACTGCTAGGCTTTTTCC 59.334 52.381 0.00 0.00 36.97 3.13
125 126 2.678190 CGCTACTGCTAGGCTTTTTCCT 60.678 50.000 0.00 0.00 40.21 3.36
126 127 3.430374 CGCTACTGCTAGGCTTTTTCCTA 60.430 47.826 0.00 0.00 37.66 2.94
202 203 1.376037 GCTCAGGTGGTTTCGGAGG 60.376 63.158 0.00 0.00 0.00 4.30
229 231 2.523325 TGAGAGAGGAAGGTGAGAGG 57.477 55.000 0.00 0.00 0.00 3.69
237 239 1.273324 GGAAGGTGAGAGGGAAGGAGA 60.273 57.143 0.00 0.00 0.00 3.71
239 241 0.338120 AGGTGAGAGGGAAGGAGAGG 59.662 60.000 0.00 0.00 0.00 3.69
254 263 5.530176 AGGAGAGGAGAAGAACTAGAAGT 57.470 43.478 0.00 0.00 0.00 3.01
424 445 2.941720 GAGCGGAGATTCTTTCTGCAAT 59.058 45.455 8.57 0.00 46.89 3.56
499 520 3.752747 TGAGTCAACGACGGATACTGTAA 59.247 43.478 0.00 0.00 37.67 2.41
506 527 4.813027 ACGACGGATACTGTAACAATTGT 58.187 39.130 4.92 4.92 0.00 2.71
511 532 7.305820 CGACGGATACTGTAACAATTGTGATAC 60.306 40.741 12.82 12.21 34.46 2.24
664 692 9.701098 TCCAAATCAATCTCTTTCAAAAATCAG 57.299 29.630 0.00 0.00 0.00 2.90
696 724 3.056107 TCGTGTAGCATGCCCCTTATATC 60.056 47.826 15.66 0.00 0.00 1.63
721 749 6.285224 TCACACGGTTCTCAAATCTTCTTTA 58.715 36.000 0.00 0.00 0.00 1.85
844 1095 0.107800 CTGGGTCATCACTGCTCCTG 60.108 60.000 0.00 0.00 0.00 3.86
937 1188 5.329493 GTGTTACGCCTGTTAATTTCCATC 58.671 41.667 0.00 0.00 0.00 3.51
938 1189 5.123344 GTGTTACGCCTGTTAATTTCCATCT 59.877 40.000 0.00 0.00 0.00 2.90
951 1202 8.979574 GTTAATTTCCATCTTATTCTCGATCGT 58.020 33.333 15.94 0.00 0.00 3.73
1010 1261 0.179062 CCTTCATTCCCTGCTCGGAG 60.179 60.000 0.00 0.00 32.13 4.63
1267 1524 3.119352 CGTCATCAACAGTCTCATCTCCA 60.119 47.826 0.00 0.00 0.00 3.86
1302 1559 3.134127 GGCGGTGGATCCAGTTGC 61.134 66.667 16.81 18.59 35.57 4.17
1306 1563 1.303561 GGTGGATCCAGTTGCTGCA 60.304 57.895 16.81 0.00 35.97 4.41
1383 1643 1.377229 CCGCTTGTTCCCCAACCTA 59.623 57.895 0.00 0.00 0.00 3.08
1399 1659 4.075793 TACCCGAGAGCCTGGCCT 62.076 66.667 16.57 12.30 0.00 5.19
1593 1859 2.434884 CGCAACATCTCCGGCTGT 60.435 61.111 0.00 0.00 0.00 4.40
1700 1966 3.717294 GACACCACCATCCCGCCT 61.717 66.667 0.00 0.00 0.00 5.52
2011 2280 2.283298 CCATCTGGTATGACACTGCAC 58.717 52.381 0.00 0.00 0.00 4.57
2205 2476 1.376683 CGCCGATCCCAACCTTGAA 60.377 57.895 0.00 0.00 0.00 2.69
2224 2516 2.125350 CTTCCACTCGCTCTGCCC 60.125 66.667 0.00 0.00 0.00 5.36
2227 2519 3.790437 CCACTCGCTCTGCCCCAT 61.790 66.667 0.00 0.00 0.00 4.00
2228 2520 2.202987 CACTCGCTCTGCCCCATC 60.203 66.667 0.00 0.00 0.00 3.51
2264 2556 2.046988 TGTGCTGATGAGGTGCCG 60.047 61.111 0.00 0.00 0.00 5.69
2369 2682 2.611800 TGCAGCCTCTCACCCCAT 60.612 61.111 0.00 0.00 0.00 4.00
2413 2736 3.195610 TCTCACTTCATGTAAGGCGATGT 59.804 43.478 8.95 0.00 39.73 3.06
2415 2738 5.079689 TCACTTCATGTAAGGCGATGTTA 57.920 39.130 8.95 0.00 39.73 2.41
2418 2741 5.580691 CACTTCATGTAAGGCGATGTTAGAA 59.419 40.000 8.95 0.00 39.73 2.10
2462 2785 2.529632 TGGCTCTGACAAGCTCTCTTA 58.470 47.619 8.76 0.00 42.13 2.10
2601 2930 8.603898 TGTATACAAGAATCTCCAAGAAGGTA 57.396 34.615 2.20 0.00 39.02 3.08
2655 2984 4.344104 CAAATGGGGTAGGTTCTGATGTT 58.656 43.478 0.00 0.00 0.00 2.71
2851 3194 0.389025 CAAAAGCCCTTGTGGTGGTC 59.611 55.000 0.00 0.00 36.04 4.02
3064 4458 7.555914 TGCATCTTTACATAGCTTACCATTTGA 59.444 33.333 0.00 0.00 0.00 2.69
3121 4517 8.873186 TTATCCAGAGTAAAAACTAAAAGGGG 57.127 34.615 0.00 0.00 0.00 4.79
3122 4518 5.074804 TCCAGAGTAAAAACTAAAAGGGGC 58.925 41.667 0.00 0.00 0.00 5.80
3123 4519 4.082949 CCAGAGTAAAAACTAAAAGGGGCG 60.083 45.833 0.00 0.00 0.00 6.13
3124 4520 4.077108 AGAGTAAAAACTAAAAGGGGCGG 58.923 43.478 0.00 0.00 0.00 6.13
3181 4951 9.590451 ACATAATTGAATGCCTTTACTTGAATG 57.410 29.630 0.00 0.00 0.00 2.67
3829 5679 4.811557 AGTTCTGTCAAAGCTACACAAGAC 59.188 41.667 0.00 0.00 0.00 3.01
3835 5687 4.210120 GTCAAAGCTACACAAGACTGAGTG 59.790 45.833 0.00 6.73 41.40 3.51
3904 5763 5.132985 TGTCTTAGAGGTAGGATAGTGCTCT 59.867 44.000 0.00 0.00 0.00 4.09
4010 5940 4.558226 AGTGATGCTATTTGAGTGTGGA 57.442 40.909 0.00 0.00 0.00 4.02
4022 5952 4.882842 TGAGTGTGGAAACTGCAGTATA 57.117 40.909 22.01 3.90 0.00 1.47
4024 5954 6.538945 TGAGTGTGGAAACTGCAGTATATA 57.461 37.500 22.01 4.68 0.00 0.86
4079 6013 1.269206 CGGTGCTGCATCTTTGTTGTT 60.269 47.619 11.64 0.00 0.00 2.83
4119 6054 0.545171 ATATGCACTGCTGAGCCTGT 59.455 50.000 0.23 0.00 0.00 4.00
4128 6063 3.084039 CTGCTGAGCCTGTGGAAATTTA 58.916 45.455 0.23 0.00 0.00 1.40
4163 6099 7.701539 ATCATTTGCTGTGTGGTTTATCTTA 57.298 32.000 0.00 0.00 0.00 2.10
4186 6776 9.994432 CTTACATGATCCAGTTTCTGTTATTTC 57.006 33.333 0.00 0.00 0.00 2.17
4192 6782 8.816894 TGATCCAGTTTCTGTTATTTCTCTAGT 58.183 33.333 0.00 0.00 0.00 2.57
4249 6843 8.195436 ACAGGAATGAATTCTCTAATTGCAATG 58.805 33.333 13.82 1.06 35.41 2.82
4251 6845 8.411683 AGGAATGAATTCTCTAATTGCAATGAC 58.588 33.333 13.82 0.00 35.41 3.06
4252 6846 7.650903 GGAATGAATTCTCTAATTGCAATGACC 59.349 37.037 13.82 0.00 35.41 4.02
4253 6847 7.649533 ATGAATTCTCTAATTGCAATGACCA 57.350 32.000 13.82 4.66 35.41 4.02
4256 6850 8.533657 TGAATTCTCTAATTGCAATGACCAAAT 58.466 29.630 13.82 8.06 35.41 2.32
4260 6854 8.761575 TCTCTAATTGCAATGACCAAATTTTC 57.238 30.769 13.82 0.00 0.00 2.29
4263 6857 3.103447 TGCAATGACCAAATTTTCGCA 57.897 38.095 0.00 0.00 0.00 5.10
4268 6862 3.077229 TGACCAAATTTTCGCACACAG 57.923 42.857 0.00 0.00 0.00 3.66
4276 6873 2.410322 TTTCGCACACAGCTGGGGAT 62.410 55.000 22.46 0.00 42.61 3.85
4323 6920 1.499049 GACTTGACGTCAACCCTGTC 58.501 55.000 26.53 25.01 42.37 3.51
4410 7007 4.494350 TTTTGATCAGTGAGCTTTGAGC 57.506 40.909 10.19 5.46 42.84 4.26
4423 7050 3.319972 AGCTTTGAGCACATGATTGTTGT 59.680 39.130 0.00 0.00 45.56 3.32
4431 7058 3.861508 GCACATGATTGTTGTGAATGGCA 60.862 43.478 0.00 0.00 45.83 4.92
4451 7078 5.656416 TGGCAGCCTAAAATAGCTACATTTT 59.344 36.000 14.15 11.07 40.37 1.82
4509 7136 4.759516 TTTGAAACGAAATCTACCAGCC 57.240 40.909 0.00 0.00 0.00 4.85
4528 7155 1.606224 CCAGCATTGCCAACCTTTCAC 60.606 52.381 4.70 0.00 0.00 3.18
4529 7156 0.681175 AGCATTGCCAACCTTTCACC 59.319 50.000 4.70 0.00 0.00 4.02
4533 7160 2.114411 GCCAACCTTTCACCCGGA 59.886 61.111 0.73 0.00 0.00 5.14
4544 7171 1.152839 CACCCGGAACAAGGTTGGT 60.153 57.895 0.73 0.00 31.72 3.67
4547 7174 2.561037 CCGGAACAAGGTTGGTGCC 61.561 63.158 0.00 0.00 31.96 5.01
4550 7177 1.652563 GAACAAGGTTGGTGCCGTC 59.347 57.895 0.00 0.00 0.00 4.79
4596 7223 1.067516 GCACAAAGCTGGAAAGAGCAA 59.932 47.619 0.00 0.00 41.83 3.91
4603 7230 0.879765 CTGGAAAGAGCAACAGCCAG 59.120 55.000 0.00 0.00 37.21 4.85
4605 7232 0.877743 GGAAAGAGCAACAGCCAGTC 59.122 55.000 0.00 0.00 0.00 3.51
4607 7234 1.803555 GAAAGAGCAACAGCCAGTCTC 59.196 52.381 0.00 0.00 0.00 3.36
4608 7235 0.036022 AAGAGCAACAGCCAGTCTCC 59.964 55.000 0.00 0.00 0.00 3.71
4609 7236 1.376553 GAGCAACAGCCAGTCTCCC 60.377 63.158 0.00 0.00 0.00 4.30
4610 7237 1.835927 GAGCAACAGCCAGTCTCCCT 61.836 60.000 0.00 0.00 0.00 4.20
4611 7238 1.376553 GCAACAGCCAGTCTCCCTC 60.377 63.158 0.00 0.00 0.00 4.30
4612 7239 1.298014 CAACAGCCAGTCTCCCTCC 59.702 63.158 0.00 0.00 0.00 4.30
4614 7241 1.197430 AACAGCCAGTCTCCCTCCAG 61.197 60.000 0.00 0.00 0.00 3.86
4616 7243 0.690411 CAGCCAGTCTCCCTCCAGAT 60.690 60.000 0.00 0.00 0.00 2.90
4617 7244 0.398381 AGCCAGTCTCCCTCCAGATC 60.398 60.000 0.00 0.00 0.00 2.75
4618 7245 1.406860 GCCAGTCTCCCTCCAGATCC 61.407 65.000 0.00 0.00 0.00 3.36
4622 7249 2.170187 CAGTCTCCCTCCAGATCCAAAG 59.830 54.545 0.00 0.00 0.00 2.77
4623 7250 1.134250 GTCTCCCTCCAGATCCAAAGC 60.134 57.143 0.00 0.00 0.00 3.51
4625 7252 0.620556 TCCCTCCAGATCCAAAGCAC 59.379 55.000 0.00 0.00 0.00 4.40
4626 7253 0.622665 CCCTCCAGATCCAAAGCACT 59.377 55.000 0.00 0.00 0.00 4.40
4627 7254 1.407989 CCCTCCAGATCCAAAGCACTC 60.408 57.143 0.00 0.00 0.00 3.51
4628 7255 1.407989 CCTCCAGATCCAAAGCACTCC 60.408 57.143 0.00 0.00 0.00 3.85
4630 7257 1.372087 CCAGATCCAAAGCACTCCGC 61.372 60.000 0.00 0.00 42.91 5.54
4631 7258 0.674581 CAGATCCAAAGCACTCCGCA 60.675 55.000 0.00 0.00 46.13 5.69
4632 7259 0.254178 AGATCCAAAGCACTCCGCAT 59.746 50.000 0.00 0.00 46.13 4.73
4633 7260 0.659957 GATCCAAAGCACTCCGCATC 59.340 55.000 0.00 0.00 46.13 3.91
4637 7264 2.680913 AAAGCACTCCGCATCACGC 61.681 57.895 0.00 0.00 46.13 5.34
4638 7265 3.596066 AAGCACTCCGCATCACGCT 62.596 57.895 0.00 0.00 46.13 5.07
4639 7266 3.558411 GCACTCCGCATCACGCTC 61.558 66.667 0.00 0.00 41.76 5.03
4640 7267 2.887568 CACTCCGCATCACGCTCC 60.888 66.667 0.00 0.00 41.76 4.70
4642 7269 2.279120 CTCCGCATCACGCTCCTC 60.279 66.667 0.00 0.00 41.76 3.71
4643 7270 3.781770 CTCCGCATCACGCTCCTCC 62.782 68.421 0.00 0.00 41.76 4.30
4644 7271 3.842923 CCGCATCACGCTCCTCCT 61.843 66.667 0.00 0.00 41.76 3.69
4645 7272 2.490148 CCGCATCACGCTCCTCCTA 61.490 63.158 0.00 0.00 41.76 2.94
4646 7273 1.299468 CGCATCACGCTCCTCCTAC 60.299 63.158 0.00 0.00 39.08 3.18
4647 7274 1.729470 CGCATCACGCTCCTCCTACT 61.729 60.000 0.00 0.00 39.08 2.57
4648 7275 0.031449 GCATCACGCTCCTCCTACTC 59.969 60.000 0.00 0.00 37.77 2.59
4649 7276 0.309302 CATCACGCTCCTCCTACTCG 59.691 60.000 0.00 0.00 0.00 4.18
4650 7277 1.448922 ATCACGCTCCTCCTACTCGC 61.449 60.000 0.00 0.00 0.00 5.03
4654 7281 2.408241 GCTCCTCCTACTCGCGTGT 61.408 63.158 18.61 18.61 0.00 4.49
4655 7282 1.935327 GCTCCTCCTACTCGCGTGTT 61.935 60.000 19.81 3.94 0.00 3.32
4656 7283 0.179161 CTCCTCCTACTCGCGTGTTG 60.179 60.000 19.81 16.78 0.00 3.33
4658 7285 1.213013 CTCCTACTCGCGTGTTGCT 59.787 57.895 19.81 0.00 43.27 3.91
4660 7287 0.388134 TCCTACTCGCGTGTTGCTTC 60.388 55.000 19.81 0.00 43.27 3.86
4662 7289 0.985549 CTACTCGCGTGTTGCTTCTC 59.014 55.000 19.81 0.00 43.27 2.87
4663 7290 0.388134 TACTCGCGTGTTGCTTCTCC 60.388 55.000 19.81 0.00 43.27 3.71
4664 7291 2.720758 CTCGCGTGTTGCTTCTCCG 61.721 63.158 5.77 0.00 43.27 4.63
4666 7293 2.594962 CGCGTGTTGCTTCTCCGTT 61.595 57.895 0.00 0.00 43.27 4.44
4668 7295 0.438830 GCGTGTTGCTTCTCCGTTAG 59.561 55.000 0.00 0.00 41.73 2.34
4669 7296 1.779569 CGTGTTGCTTCTCCGTTAGT 58.220 50.000 0.00 0.00 0.00 2.24
4670 7297 2.132762 CGTGTTGCTTCTCCGTTAGTT 58.867 47.619 0.00 0.00 0.00 2.24
4671 7298 2.096909 CGTGTTGCTTCTCCGTTAGTTG 60.097 50.000 0.00 0.00 0.00 3.16
4672 7299 1.871039 TGTTGCTTCTCCGTTAGTTGC 59.129 47.619 0.00 0.00 0.00 4.17
4673 7300 1.871039 GTTGCTTCTCCGTTAGTTGCA 59.129 47.619 0.00 0.00 34.51 4.08
4674 7301 1.795768 TGCTTCTCCGTTAGTTGCAG 58.204 50.000 0.00 0.00 33.25 4.41
4676 7303 1.727335 GCTTCTCCGTTAGTTGCAGTC 59.273 52.381 0.00 0.00 0.00 3.51
4677 7304 1.986378 CTTCTCCGTTAGTTGCAGTCG 59.014 52.381 0.00 0.00 0.00 4.18
4678 7305 0.388134 TCTCCGTTAGTTGCAGTCGC 60.388 55.000 0.00 0.00 39.24 5.19
4679 7306 0.388649 CTCCGTTAGTTGCAGTCGCT 60.389 55.000 0.00 0.00 39.64 4.93
4680 7307 0.388134 TCCGTTAGTTGCAGTCGCTC 60.388 55.000 0.00 0.00 39.64 5.03
4683 7310 1.321743 CGTTAGTTGCAGTCGCTCATC 59.678 52.381 0.00 0.00 39.64 2.92
4684 7311 1.321743 GTTAGTTGCAGTCGCTCATCG 59.678 52.381 0.00 0.00 39.64 3.84
4685 7312 0.179137 TAGTTGCAGTCGCTCATCGG 60.179 55.000 0.00 0.00 39.64 4.18
4686 7313 1.446099 GTTGCAGTCGCTCATCGGA 60.446 57.895 0.00 0.00 39.64 4.55
4687 7314 1.153765 TTGCAGTCGCTCATCGGAG 60.154 57.895 0.00 0.00 44.33 4.63
4698 7325 1.227089 CATCGGAGCTCTTCACCGG 60.227 63.158 14.64 0.00 46.81 5.28
4699 7326 3.082579 ATCGGAGCTCTTCACCGGC 62.083 63.158 14.64 0.00 46.81 6.13
4702 7329 4.443266 GAGCTCTTCACCGGCGCT 62.443 66.667 7.64 0.00 0.00 5.92
4721 7348 4.489771 GGGTGGGATCCCGTGCTG 62.490 72.222 26.03 0.00 37.93 4.41
4722 7349 3.717294 GGTGGGATCCCGTGCTGT 61.717 66.667 26.03 0.00 39.42 4.40
4723 7350 2.351276 GTGGGATCCCGTGCTGTT 59.649 61.111 26.03 0.00 39.42 3.16
4724 7351 2.040544 GTGGGATCCCGTGCTGTTG 61.041 63.158 26.03 0.00 39.42 3.33
4725 7352 2.351276 GGGATCCCGTGCTGTTGT 59.649 61.111 17.02 0.00 0.00 3.32
4727 7354 2.040544 GGATCCCGTGCTGTTGTGG 61.041 63.158 0.00 0.00 0.00 4.17
4728 7355 2.672996 ATCCCGTGCTGTTGTGGC 60.673 61.111 0.00 0.00 0.00 5.01
4730 7357 3.663176 CCCGTGCTGTTGTGGCTG 61.663 66.667 0.00 0.00 0.00 4.85
4731 7358 4.332637 CCGTGCTGTTGTGGCTGC 62.333 66.667 0.00 0.00 0.00 5.25
4732 7359 4.332637 CGTGCTGTTGTGGCTGCC 62.333 66.667 12.87 12.87 33.25 4.85
4733 7360 3.218470 GTGCTGTTGTGGCTGCCA 61.218 61.111 19.30 19.30 33.25 4.92
4755 7382 4.767255 GTGCCCTGCTCCGACCAG 62.767 72.222 0.00 0.00 0.00 4.00
4766 7393 4.379243 CGACCAGTCGCCAAGGCT 62.379 66.667 7.33 0.00 46.50 4.58
4767 7394 2.032681 GACCAGTCGCCAAGGCTT 59.967 61.111 9.73 0.00 39.32 4.35
4768 7395 2.032681 ACCAGTCGCCAAGGCTTC 59.967 61.111 9.73 2.12 39.32 3.86
4769 7396 2.747855 CCAGTCGCCAAGGCTTCC 60.748 66.667 9.73 0.00 39.32 3.46
4770 7397 2.032528 CAGTCGCCAAGGCTTCCA 59.967 61.111 9.73 0.00 39.32 3.53
4772 7399 3.056328 GTCGCCAAGGCTTCCACC 61.056 66.667 9.73 0.00 39.32 4.61
4773 7400 3.249189 TCGCCAAGGCTTCCACCT 61.249 61.111 9.73 0.00 43.91 4.00
4774 7401 2.747855 CGCCAAGGCTTCCACCTC 60.748 66.667 9.73 0.00 39.93 3.85
4775 7402 2.759795 GCCAAGGCTTCCACCTCT 59.240 61.111 3.29 0.00 39.93 3.69
4778 7405 1.377994 CAAGGCTTCCACCTCTGCT 59.622 57.895 0.00 0.00 39.93 4.24
4779 7406 0.251077 CAAGGCTTCCACCTCTGCTT 60.251 55.000 0.00 0.00 39.93 3.91
4780 7407 0.037447 AAGGCTTCCACCTCTGCTTC 59.963 55.000 0.00 0.00 39.93 3.86
4781 7408 1.743252 GGCTTCCACCTCTGCTTCG 60.743 63.158 0.00 0.00 0.00 3.79
4782 7409 2.394563 GCTTCCACCTCTGCTTCGC 61.395 63.158 0.00 0.00 0.00 4.70
4783 7410 2.048222 TTCCACCTCTGCTTCGCG 60.048 61.111 0.00 0.00 0.00 5.87
4784 7411 4.742201 TCCACCTCTGCTTCGCGC 62.742 66.667 0.00 0.00 39.77 6.86
4800 7427 4.385405 GCAGCGAGGCCACACTCT 62.385 66.667 5.01 0.00 35.33 3.24
4801 7428 3.006756 GCAGCGAGGCCACACTCTA 62.007 63.158 5.01 0.00 35.33 2.43
4803 7430 1.304547 AGCGAGGCCACACTCTACT 60.305 57.895 5.01 0.00 35.33 2.57
4804 7431 1.139947 GCGAGGCCACACTCTACTC 59.860 63.158 5.01 0.00 35.33 2.59
4805 7432 1.595993 GCGAGGCCACACTCTACTCA 61.596 60.000 5.01 0.00 35.33 3.41
4807 7434 1.066303 CGAGGCCACACTCTACTCATC 59.934 57.143 5.01 0.00 35.33 2.92
4808 7435 2.103373 GAGGCCACACTCTACTCATCA 58.897 52.381 5.01 0.00 34.65 3.07
4809 7436 1.827969 AGGCCACACTCTACTCATCAC 59.172 52.381 5.01 0.00 0.00 3.06
4810 7437 1.134670 GGCCACACTCTACTCATCACC 60.135 57.143 0.00 0.00 0.00 4.02
4811 7438 1.134670 GCCACACTCTACTCATCACCC 60.135 57.143 0.00 0.00 0.00 4.61
4812 7439 1.135139 CCACACTCTACTCATCACCCG 59.865 57.143 0.00 0.00 0.00 5.28
4813 7440 1.819288 CACACTCTACTCATCACCCGT 59.181 52.381 0.00 0.00 0.00 5.28
4814 7441 3.014623 CACACTCTACTCATCACCCGTA 58.985 50.000 0.00 0.00 0.00 4.02
4815 7442 3.015327 ACACTCTACTCATCACCCGTAC 58.985 50.000 0.00 0.00 0.00 3.67
4816 7443 2.358267 CACTCTACTCATCACCCGTACC 59.642 54.545 0.00 0.00 0.00 3.34
4817 7444 1.955080 CTCTACTCATCACCCGTACCC 59.045 57.143 0.00 0.00 0.00 3.69
4818 7445 0.666913 CTACTCATCACCCGTACCCG 59.333 60.000 0.00 0.00 0.00 5.28
4819 7446 1.386525 TACTCATCACCCGTACCCGC 61.387 60.000 0.00 0.00 0.00 6.13
4820 7447 2.363276 TCATCACCCGTACCCGCT 60.363 61.111 0.00 0.00 0.00 5.52
4821 7448 2.202878 CATCACCCGTACCCGCTG 60.203 66.667 0.00 0.00 0.00 5.18
4822 7449 4.157120 ATCACCCGTACCCGCTGC 62.157 66.667 0.00 0.00 0.00 5.25
4828 7455 4.208686 CGTACCCGCTGCCTCCTC 62.209 72.222 0.00 0.00 0.00 3.71
4829 7456 3.851128 GTACCCGCTGCCTCCTCC 61.851 72.222 0.00 0.00 0.00 4.30
4830 7457 4.075793 TACCCGCTGCCTCCTCCT 62.076 66.667 0.00 0.00 0.00 3.69
4833 7460 3.847602 CCGCTGCCTCCTCCTGAG 61.848 72.222 0.00 0.00 41.07 3.35
4834 7461 2.757508 CGCTGCCTCCTCCTGAGA 60.758 66.667 0.00 0.00 44.42 3.27
4838 7465 1.306397 TGCCTCCTCCTGAGATGCA 60.306 57.895 0.00 0.00 44.42 3.96
4840 7467 0.254178 GCCTCCTCCTGAGATGCAAA 59.746 55.000 0.00 0.00 44.42 3.68
4855 7482 1.288127 CAAAGTTGCTGCCTCCTGC 59.712 57.895 0.00 0.00 41.77 4.85
4864 7491 4.555610 GCCTCCTGCATCTTCCTG 57.444 61.111 0.00 0.00 40.77 3.86
4865 7492 1.823041 GCCTCCTGCATCTTCCTGC 60.823 63.158 0.00 0.00 42.62 4.85
4868 7495 0.530211 CTCCTGCATCTTCCTGCGAG 60.530 60.000 0.00 0.00 45.30 5.03
4869 7496 1.523258 CCTGCATCTTCCTGCGAGG 60.523 63.158 0.00 0.00 45.30 4.63
4871 7498 0.530211 CTGCATCTTCCTGCGAGGAG 60.530 60.000 5.26 1.88 46.73 3.69
4872 7499 1.886777 GCATCTTCCTGCGAGGAGC 60.887 63.158 5.26 2.81 46.73 4.70
4873 7500 1.227497 CATCTTCCTGCGAGGAGCC 60.227 63.158 5.26 0.00 46.73 4.70
4874 7501 1.687146 ATCTTCCTGCGAGGAGCCA 60.687 57.895 5.26 0.00 46.73 4.75
4875 7502 1.965754 ATCTTCCTGCGAGGAGCCAC 61.966 60.000 5.26 0.00 46.73 5.01
4881 7508 2.032681 GCGAGGAGCCACCAGTTT 59.967 61.111 0.00 0.00 42.04 2.66
4883 7510 1.376037 CGAGGAGCCACCAGTTTCC 60.376 63.158 0.47 0.00 42.04 3.13
4884 7511 1.002011 GAGGAGCCACCAGTTTCCC 60.002 63.158 0.47 0.00 42.04 3.97
4885 7512 2.359975 GGAGCCACCAGTTTCCCG 60.360 66.667 0.00 0.00 38.79 5.14
4886 7513 3.056328 GAGCCACCAGTTTCCCGC 61.056 66.667 0.00 0.00 0.00 6.13
4888 7515 4.966787 GCCACCAGTTTCCCGCCA 62.967 66.667 0.00 0.00 0.00 5.69
4889 7516 2.672996 CCACCAGTTTCCCGCCAG 60.673 66.667 0.00 0.00 0.00 4.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 2.108566 ATGGCTAGCAGCAGCGAG 59.891 61.111 18.24 6.85 44.75 5.03
7 8 1.675720 TACATGGCTAGCAGCAGCGA 61.676 55.000 18.24 7.21 44.75 4.93
8 9 0.602106 ATACATGGCTAGCAGCAGCG 60.602 55.000 18.24 4.55 44.75 5.18
9 10 2.344950 CTATACATGGCTAGCAGCAGC 58.655 52.381 18.24 7.98 44.75 5.25
10 11 2.289257 TGCTATACATGGCTAGCAGCAG 60.289 50.000 21.04 5.61 43.97 4.24
11 12 1.693606 TGCTATACATGGCTAGCAGCA 59.306 47.619 21.04 17.50 43.97 4.41
12 13 2.462456 TGCTATACATGGCTAGCAGC 57.538 50.000 21.04 15.00 43.97 5.25
14 15 5.012046 ACACTATTGCTATACATGGCTAGCA 59.988 40.000 21.04 21.04 46.37 3.49
15 16 5.349817 CACACTATTGCTATACATGGCTAGC 59.650 44.000 17.36 17.36 40.60 3.42
16 17 5.871524 CCACACTATTGCTATACATGGCTAG 59.128 44.000 0.00 0.00 35.09 3.42
17 18 5.279960 CCCACACTATTGCTATACATGGCTA 60.280 44.000 0.00 0.00 35.09 3.93
18 19 4.505566 CCCACACTATTGCTATACATGGCT 60.506 45.833 0.00 0.00 35.09 4.75
19 20 3.753272 CCCACACTATTGCTATACATGGC 59.247 47.826 0.00 0.00 34.56 4.40
20 21 4.973168 ACCCACACTATTGCTATACATGG 58.027 43.478 0.00 0.00 0.00 3.66
21 22 5.610398 TGACCCACACTATTGCTATACATG 58.390 41.667 0.00 0.00 0.00 3.21
22 23 5.743130 GCTGACCCACACTATTGCTATACAT 60.743 44.000 0.00 0.00 0.00 2.29
23 24 4.442893 GCTGACCCACACTATTGCTATACA 60.443 45.833 0.00 0.00 0.00 2.29
24 25 4.058817 GCTGACCCACACTATTGCTATAC 58.941 47.826 0.00 0.00 0.00 1.47
25 26 3.709141 TGCTGACCCACACTATTGCTATA 59.291 43.478 0.00 0.00 0.00 1.31
26 27 2.505407 TGCTGACCCACACTATTGCTAT 59.495 45.455 0.00 0.00 0.00 2.97
27 28 1.905894 TGCTGACCCACACTATTGCTA 59.094 47.619 0.00 0.00 0.00 3.49
28 29 0.692476 TGCTGACCCACACTATTGCT 59.308 50.000 0.00 0.00 0.00 3.91
29 30 0.804989 GTGCTGACCCACACTATTGC 59.195 55.000 0.00 0.00 35.80 3.56
30 31 1.078709 CGTGCTGACCCACACTATTG 58.921 55.000 0.00 0.00 35.47 1.90
31 32 0.673644 GCGTGCTGACCCACACTATT 60.674 55.000 0.00 0.00 35.47 1.73
32 33 1.079127 GCGTGCTGACCCACACTAT 60.079 57.895 0.00 0.00 35.47 2.12
33 34 2.342279 GCGTGCTGACCCACACTA 59.658 61.111 0.00 0.00 35.47 2.74
34 35 4.969196 CGCGTGCTGACCCACACT 62.969 66.667 0.00 0.00 35.47 3.55
45 46 1.660575 ATGTATCCGTAGCGCGTGC 60.661 57.895 14.39 14.39 43.24 5.34
46 47 0.594028 ACATGTATCCGTAGCGCGTG 60.594 55.000 8.43 0.00 39.32 5.34
47 48 0.101759 AACATGTATCCGTAGCGCGT 59.898 50.000 8.43 0.00 39.32 6.01
48 49 1.976728 CTAACATGTATCCGTAGCGCG 59.023 52.381 0.00 0.00 40.95 6.86
49 50 1.719780 GCTAACATGTATCCGTAGCGC 59.280 52.381 9.99 0.00 0.00 5.92
50 51 2.980476 CAGCTAACATGTATCCGTAGCG 59.020 50.000 16.82 10.52 34.60 4.26
51 52 3.978687 ACAGCTAACATGTATCCGTAGC 58.021 45.455 15.63 15.63 0.00 3.58
52 53 5.154932 GCTACAGCTAACATGTATCCGTAG 58.845 45.833 0.00 8.19 38.21 3.51
53 54 4.319984 CGCTACAGCTAACATGTATCCGTA 60.320 45.833 0.00 0.00 39.32 4.02
54 55 3.550233 CGCTACAGCTAACATGTATCCGT 60.550 47.826 0.00 0.00 39.32 4.69
55 56 2.980476 CGCTACAGCTAACATGTATCCG 59.020 50.000 0.00 0.00 39.32 4.18
56 57 3.978687 ACGCTACAGCTAACATGTATCC 58.021 45.455 0.00 0.00 39.32 2.59
57 58 3.664486 CGACGCTACAGCTAACATGTATC 59.336 47.826 0.00 0.00 39.32 2.24
58 59 3.066342 ACGACGCTACAGCTAACATGTAT 59.934 43.478 0.00 0.00 39.32 2.29
59 60 2.421073 ACGACGCTACAGCTAACATGTA 59.579 45.455 0.00 0.00 39.32 2.29
60 61 1.201647 ACGACGCTACAGCTAACATGT 59.798 47.619 0.00 0.00 39.32 3.21
61 62 1.909376 ACGACGCTACAGCTAACATG 58.091 50.000 0.00 0.00 39.32 3.21
62 63 3.314357 TGATACGACGCTACAGCTAACAT 59.686 43.478 0.00 0.00 39.32 2.71
63 64 2.679336 TGATACGACGCTACAGCTAACA 59.321 45.455 0.00 0.00 39.32 2.41
64 65 3.242673 ACTGATACGACGCTACAGCTAAC 60.243 47.826 13.07 0.00 39.32 2.34
65 66 2.941064 ACTGATACGACGCTACAGCTAA 59.059 45.455 13.07 0.00 39.32 3.09
66 67 2.558378 ACTGATACGACGCTACAGCTA 58.442 47.619 13.07 0.00 39.32 3.32
67 68 1.380524 ACTGATACGACGCTACAGCT 58.619 50.000 13.07 0.00 39.32 4.24
68 69 2.906153 CTACTGATACGACGCTACAGC 58.094 52.381 13.07 0.00 37.78 4.40
69 70 2.659558 CGCTACTGATACGACGCTACAG 60.660 54.545 12.04 12.04 35.14 2.74
70 71 1.259770 CGCTACTGATACGACGCTACA 59.740 52.381 0.00 0.00 0.00 2.74
71 72 1.934756 CGCTACTGATACGACGCTAC 58.065 55.000 0.00 0.00 0.00 3.58
72 73 0.234106 GCGCTACTGATACGACGCTA 59.766 55.000 0.00 0.00 42.81 4.26
73 74 1.009900 GCGCTACTGATACGACGCT 60.010 57.895 0.00 0.00 42.81 5.07
74 75 1.298116 TGCGCTACTGATACGACGC 60.298 57.895 9.73 0.00 46.05 5.19
75 76 0.928908 GGTGCGCTACTGATACGACG 60.929 60.000 9.73 0.00 0.00 5.12
76 77 0.099968 TGGTGCGCTACTGATACGAC 59.900 55.000 9.73 0.00 0.00 4.34
77 78 0.812549 TTGGTGCGCTACTGATACGA 59.187 50.000 9.73 0.00 0.00 3.43
78 79 1.635844 TTTGGTGCGCTACTGATACG 58.364 50.000 9.73 0.00 0.00 3.06
79 80 3.493503 GGTATTTGGTGCGCTACTGATAC 59.506 47.826 9.73 11.44 0.00 2.24
80 81 3.386726 AGGTATTTGGTGCGCTACTGATA 59.613 43.478 9.73 0.00 0.00 2.15
81 82 2.170607 AGGTATTTGGTGCGCTACTGAT 59.829 45.455 9.73 0.00 0.00 2.90
82 83 1.553248 AGGTATTTGGTGCGCTACTGA 59.447 47.619 9.73 0.00 0.00 3.41
83 84 1.665679 CAGGTATTTGGTGCGCTACTG 59.334 52.381 9.73 0.00 0.00 2.74
84 85 2.012051 GCAGGTATTTGGTGCGCTACT 61.012 52.381 9.73 0.00 0.00 2.57
85 86 0.377203 GCAGGTATTTGGTGCGCTAC 59.623 55.000 9.73 5.08 0.00 3.58
86 87 2.775351 GCAGGTATTTGGTGCGCTA 58.225 52.632 9.73 0.00 0.00 4.26
87 88 3.590824 GCAGGTATTTGGTGCGCT 58.409 55.556 9.73 0.00 0.00 5.92
90 91 0.377203 GTAGCGCAGGTATTTGGTGC 59.623 55.000 11.47 0.00 44.46 5.01
91 92 1.665679 CAGTAGCGCAGGTATTTGGTG 59.334 52.381 11.47 0.00 44.46 4.17
92 93 2.012051 GCAGTAGCGCAGGTATTTGGT 61.012 52.381 11.47 0.00 44.46 3.67
93 94 0.657840 GCAGTAGCGCAGGTATTTGG 59.342 55.000 11.47 0.00 44.46 3.28
103 104 6.995761 TAGGAAAAAGCCTAGCAGTAGCGC 62.996 50.000 0.00 0.00 41.87 5.92
104 105 3.430374 TAGGAAAAAGCCTAGCAGTAGCG 60.430 47.826 0.00 0.00 41.87 4.26
105 106 2.992593 AGGAAAAAGCCTAGCAGTAGC 58.007 47.619 0.00 0.00 36.22 3.58
113 114 3.199289 GGCCACTACTAGGAAAAAGCCTA 59.801 47.826 0.00 0.00 39.50 3.93
114 115 2.026169 GGCCACTACTAGGAAAAAGCCT 60.026 50.000 0.00 0.00 42.15 4.58
115 116 2.366533 GGCCACTACTAGGAAAAAGCC 58.633 52.381 0.00 0.00 0.00 4.35
116 117 2.366533 GGGCCACTACTAGGAAAAAGC 58.633 52.381 4.39 0.00 0.00 3.51
117 118 2.027469 ACGGGCCACTACTAGGAAAAAG 60.027 50.000 4.39 0.00 0.00 2.27
118 119 1.980036 ACGGGCCACTACTAGGAAAAA 59.020 47.619 4.39 0.00 0.00 1.94
119 120 1.648116 ACGGGCCACTACTAGGAAAA 58.352 50.000 4.39 0.00 0.00 2.29
120 121 1.276989 CAACGGGCCACTACTAGGAAA 59.723 52.381 4.39 0.00 0.00 3.13
121 122 0.899720 CAACGGGCCACTACTAGGAA 59.100 55.000 4.39 0.00 0.00 3.36
122 123 1.610554 GCAACGGGCCACTACTAGGA 61.611 60.000 4.39 0.00 36.11 2.94
123 124 1.153429 GCAACGGGCCACTACTAGG 60.153 63.158 4.39 0.00 36.11 3.02
124 125 4.515404 GCAACGGGCCACTACTAG 57.485 61.111 4.39 0.00 36.11 2.57
202 203 2.235898 ACCTTCCTCTCTCATTGCAGAC 59.764 50.000 0.00 0.00 0.00 3.51
229 231 4.862371 TCTAGTTCTTCTCCTCTCCTTCC 58.138 47.826 0.00 0.00 0.00 3.46
237 239 4.896482 ACACACACTTCTAGTTCTTCTCCT 59.104 41.667 0.00 0.00 0.00 3.69
239 241 4.985409 CCACACACACTTCTAGTTCTTCTC 59.015 45.833 0.00 0.00 0.00 2.87
254 263 1.073025 GAGCATCACCCCACACACA 59.927 57.895 0.00 0.00 33.17 3.72
424 445 2.297701 GTTGCAACAAGAGGACCTTCA 58.702 47.619 24.52 0.00 31.42 3.02
499 520 3.696051 GTGGCCATCAGTATCACAATTGT 59.304 43.478 9.72 4.92 0.00 2.71
506 527 2.042686 GCTTGTGGCCATCAGTATCA 57.957 50.000 9.72 0.00 34.27 2.15
534 555 6.016610 TGCAATAGGACCTTTGTTGTAGAAAC 60.017 38.462 0.00 0.00 0.00 2.78
664 692 2.099831 CTACACGAGTCGGCCGAC 59.900 66.667 43.92 43.92 44.86 4.79
696 724 4.310769 AGAAGATTTGAGAACCGTGTGAG 58.689 43.478 0.00 0.00 0.00 3.51
745 809 0.456221 CTCGAAGGCTAGCGGAAGAA 59.544 55.000 9.00 0.00 0.00 2.52
780 1019 2.847327 TGCAACTCCTTCTCCTCAAG 57.153 50.000 0.00 0.00 0.00 3.02
844 1095 0.889186 TCCTTCCTTTCTTGCACGGC 60.889 55.000 0.00 0.00 0.00 5.68
963 1214 1.963855 CGGTTGGATTGCACGGTGA 60.964 57.895 13.29 0.00 0.00 4.02
1228 1485 1.295423 CGATGTTGGAGACCGGGTT 59.705 57.895 6.32 0.00 0.00 4.11
1296 1553 1.361271 CACACCCTTGCAGCAACTG 59.639 57.895 2.83 2.56 34.12 3.16
1306 1563 1.227853 GGTCGTCTTGCACACCCTT 60.228 57.895 0.00 0.00 0.00 3.95
1557 1823 4.147449 CAGGCATGGACGAGGCGA 62.147 66.667 0.00 0.00 35.18 5.54
1593 1859 1.893137 AGGTGCAGAGTGTCGTCAATA 59.107 47.619 0.00 0.00 0.00 1.90
1700 1966 2.172082 AGCTTGCTAATGATGCAGGAGA 59.828 45.455 2.13 0.00 41.71 3.71
2011 2280 2.418746 CGAGTTTCATGGTAGGTGGGAG 60.419 54.545 0.00 0.00 0.00 4.30
2205 2476 2.659610 GCAGAGCGAGTGGAAGGT 59.340 61.111 0.00 0.00 0.00 3.50
2245 2537 1.002868 GGCACCTCATCAGCACAGT 60.003 57.895 0.00 0.00 0.00 3.55
2246 2538 2.104859 CGGCACCTCATCAGCACAG 61.105 63.158 0.00 0.00 0.00 3.66
2352 2665 2.611800 ATGGGGTGAGAGGCTGCA 60.612 61.111 0.50 0.00 0.00 4.41
2360 2673 3.849951 CGTCCGGGATGGGGTGAG 61.850 72.222 8.45 0.00 38.76 3.51
2369 2682 2.175035 CTTTACTTGGGCGTCCGGGA 62.175 60.000 0.00 0.00 35.24 5.14
2413 2736 2.681976 GCAGAGGCAAGGCAGATTCTAA 60.682 50.000 0.00 0.00 40.72 2.10
2415 2738 0.394080 GCAGAGGCAAGGCAGATTCT 60.394 55.000 0.00 0.00 40.72 2.40
2418 2741 1.077644 CAGCAGAGGCAAGGCAGAT 60.078 57.895 0.00 0.00 44.61 2.90
2441 2764 1.570803 AGAGAGCTTGTCAGAGCCAT 58.429 50.000 0.00 0.00 43.74 4.40
2462 2785 2.098117 GCAAGCCGCTTAACATCTTGAT 59.902 45.455 5.03 0.00 37.03 2.57
2620 2949 1.068588 CCCATTTGGCATCTGAGCATG 59.931 52.381 0.00 0.00 35.83 4.06
2655 2984 6.701145 TGTTAGCAATAACCAACAACAAGA 57.299 33.333 0.00 0.00 0.00 3.02
3064 4458 9.515226 TTTAGGCTGACAGAATAATAAAACAGT 57.485 29.630 6.65 0.00 0.00 3.55
3079 4473 3.454812 GGATAAGAGGGTTTAGGCTGACA 59.545 47.826 0.00 0.00 0.00 3.58
3112 4508 2.122783 TGAATGACCGCCCCTTTTAG 57.877 50.000 0.00 0.00 0.00 1.85
3121 4517 4.860072 ACTTCTTTTTCTTGAATGACCGC 58.140 39.130 0.00 0.00 0.00 5.68
3122 4518 6.955963 CGATACTTCTTTTTCTTGAATGACCG 59.044 38.462 0.00 0.00 0.00 4.79
3123 4519 8.029642 TCGATACTTCTTTTTCTTGAATGACC 57.970 34.615 0.00 0.00 0.00 4.02
3124 4520 8.171840 CCTCGATACTTCTTTTTCTTGAATGAC 58.828 37.037 0.00 0.00 0.00 3.06
3259 5037 0.741221 GAGCACGGTGATGAAGGGAC 60.741 60.000 13.29 0.00 0.00 4.46
3829 5679 4.683320 CACAGAACTACACATCACACTCAG 59.317 45.833 0.00 0.00 0.00 3.35
3835 5687 5.289675 GCATAGTCACAGAACTACACATCAC 59.710 44.000 0.00 0.00 34.68 3.06
3904 5763 8.908903 ACAATAACCACTTGTTAGATTTCACAA 58.091 29.630 0.00 0.00 42.50 3.33
3941 5865 9.692749 ATTACTAACACACATCGTAGGATATTG 57.307 33.333 0.00 1.67 0.00 1.90
3951 5881 8.192068 TCAAATACCATTACTAACACACATCG 57.808 34.615 0.00 0.00 0.00 3.84
3978 5908 8.565896 TCAAATAGCATCACTAACACAAATCT 57.434 30.769 0.00 0.00 33.57 2.40
3982 5912 6.710295 ACACTCAAATAGCATCACTAACACAA 59.290 34.615 0.00 0.00 33.57 3.33
4057 5987 0.593128 AACAAAGATGCAGCACCGTC 59.407 50.000 4.07 0.00 0.00 4.79
4079 6013 0.109532 TGGGAGCACGACCAAATTCA 59.890 50.000 0.00 0.00 32.89 2.57
4109 6044 3.084786 ACTAAATTTCCACAGGCTCAGC 58.915 45.455 0.00 0.00 0.00 4.26
4128 6063 8.623903 CCACACAGCAAATGATATAATACAACT 58.376 33.333 0.00 0.00 0.00 3.16
4141 6076 6.676950 TGTAAGATAAACCACACAGCAAATG 58.323 36.000 0.00 0.00 0.00 2.32
4163 6099 8.105829 AGAGAAATAACAGAAACTGGATCATGT 58.894 33.333 0.00 0.00 35.51 3.21
4203 6793 9.515226 TTCCTGTTTTGATATTACTAAGCAAGT 57.485 29.630 0.00 0.00 42.62 3.16
4222 6812 7.707624 TGCAATTAGAGAATTCATTCCTGTT 57.292 32.000 8.44 0.00 37.51 3.16
4223 6813 7.707624 TTGCAATTAGAGAATTCATTCCTGT 57.292 32.000 8.44 0.00 37.51 4.00
4224 6814 8.410912 TCATTGCAATTAGAGAATTCATTCCTG 58.589 33.333 9.83 0.00 37.51 3.86
4225 6815 8.411683 GTCATTGCAATTAGAGAATTCATTCCT 58.588 33.333 9.83 1.97 37.51 3.36
4249 6843 1.786579 GCTGTGTGCGAAAATTTGGTC 59.213 47.619 0.00 0.00 0.00 4.02
4263 6857 0.398522 TCCGATATCCCCAGCTGTGT 60.399 55.000 13.81 0.00 0.00 3.72
4268 6862 1.207329 GTACCATCCGATATCCCCAGC 59.793 57.143 0.00 0.00 0.00 4.85
4276 6873 4.503123 CCAATTCTGCAGTACCATCCGATA 60.503 45.833 14.67 0.00 0.00 2.92
4323 6920 9.991906 AATAAATTGAATGATTGCTAATGAGGG 57.008 29.630 0.00 0.00 0.00 4.30
4423 7050 3.902218 AGCTATTTTAGGCTGCCATTCA 58.098 40.909 22.65 1.98 37.41 2.57
4431 7058 9.771534 CTAGAGAAAATGTAGCTATTTTAGGCT 57.228 33.333 7.09 7.51 39.60 4.58
4451 7078 6.556116 ACCAAGTTTACCCTACAAACTAGAGA 59.444 38.462 0.00 0.00 43.62 3.10
4509 7136 1.606224 GGTGAAAGGTTGGCAATGCTG 60.606 52.381 1.92 0.00 0.00 4.41
4528 7155 2.561037 GCACCAACCTTGTTCCGGG 61.561 63.158 0.00 0.00 0.00 5.73
4529 7156 2.561037 GGCACCAACCTTGTTCCGG 61.561 63.158 0.00 0.00 0.00 5.14
4533 7160 2.184167 CGACGGCACCAACCTTGTT 61.184 57.895 0.00 0.00 0.00 2.83
4547 7174 2.158959 GCAAGTGACCGGATCGACG 61.159 63.158 9.46 0.00 0.00 5.12
4596 7223 1.611851 CTGGAGGGAGACTGGCTGT 60.612 63.158 0.00 0.00 0.00 4.40
4603 7230 1.134250 GCTTTGGATCTGGAGGGAGAC 60.134 57.143 0.00 0.00 0.00 3.36
4605 7232 0.914644 TGCTTTGGATCTGGAGGGAG 59.085 55.000 0.00 0.00 0.00 4.30
4607 7234 0.622665 AGTGCTTTGGATCTGGAGGG 59.377 55.000 0.00 0.00 0.00 4.30
4608 7235 1.407989 GGAGTGCTTTGGATCTGGAGG 60.408 57.143 0.00 0.00 0.00 4.30
4609 7236 1.741732 CGGAGTGCTTTGGATCTGGAG 60.742 57.143 0.00 0.00 0.00 3.86
4610 7237 0.250234 CGGAGTGCTTTGGATCTGGA 59.750 55.000 0.00 0.00 0.00 3.86
4611 7238 1.372087 GCGGAGTGCTTTGGATCTGG 61.372 60.000 0.00 0.00 41.73 3.86
4612 7239 0.674581 TGCGGAGTGCTTTGGATCTG 60.675 55.000 0.00 0.00 46.63 2.90
4614 7241 0.659957 GATGCGGAGTGCTTTGGATC 59.340 55.000 0.00 0.00 46.63 3.36
4616 7243 0.955428 GTGATGCGGAGTGCTTTGGA 60.955 55.000 0.00 0.00 46.63 3.53
4617 7244 1.503542 GTGATGCGGAGTGCTTTGG 59.496 57.895 0.00 0.00 46.63 3.28
4618 7245 1.133253 CGTGATGCGGAGTGCTTTG 59.867 57.895 0.00 0.00 46.63 2.77
4630 7257 0.309302 CGAGTAGGAGGAGCGTGATG 59.691 60.000 0.00 0.00 0.00 3.07
4631 7258 1.448922 GCGAGTAGGAGGAGCGTGAT 61.449 60.000 0.00 0.00 0.00 3.06
4632 7259 2.113433 GCGAGTAGGAGGAGCGTGA 61.113 63.158 0.00 0.00 0.00 4.35
4633 7260 2.409651 GCGAGTAGGAGGAGCGTG 59.590 66.667 0.00 0.00 0.00 5.34
4649 7276 0.438830 CTAACGGAGAAGCAACACGC 59.561 55.000 0.00 0.00 42.91 5.34
4650 7277 1.779569 ACTAACGGAGAAGCAACACG 58.220 50.000 0.00 0.00 0.00 4.49
4654 7281 2.143122 CTGCAACTAACGGAGAAGCAA 58.857 47.619 0.00 0.13 37.78 3.91
4655 7282 1.070134 ACTGCAACTAACGGAGAAGCA 59.930 47.619 0.00 9.13 37.11 3.91
4656 7283 1.727335 GACTGCAACTAACGGAGAAGC 59.273 52.381 0.00 0.00 0.00 3.86
4658 7285 1.933500 GCGACTGCAACTAACGGAGAA 60.934 52.381 0.00 0.00 42.15 2.87
4660 7287 0.388649 AGCGACTGCAACTAACGGAG 60.389 55.000 0.00 0.00 46.23 4.63
4662 7289 0.666274 TGAGCGACTGCAACTAACGG 60.666 55.000 0.00 0.00 46.23 4.44
4663 7290 1.321743 GATGAGCGACTGCAACTAACG 59.678 52.381 0.00 0.00 46.23 3.18
4664 7291 1.321743 CGATGAGCGACTGCAACTAAC 59.678 52.381 0.00 0.00 46.23 2.34
4666 7293 0.179137 CCGATGAGCGACTGCAACTA 60.179 55.000 0.00 0.00 46.23 2.24
4668 7295 1.416813 CTCCGATGAGCGACTGCAAC 61.417 60.000 0.00 0.00 46.23 4.17
4669 7296 1.153765 CTCCGATGAGCGACTGCAA 60.154 57.895 0.00 0.00 46.23 4.08
4670 7297 2.491621 CTCCGATGAGCGACTGCA 59.508 61.111 0.00 0.00 46.23 4.41
4678 7305 3.657956 GGTGAAGAGCTCCGATGAG 57.342 57.895 10.93 0.00 41.84 2.90
4685 7312 4.443266 AGCGCCGGTGAAGAGCTC 62.443 66.667 21.76 5.27 31.94 4.09
4686 7313 4.749310 CAGCGCCGGTGAAGAGCT 62.749 66.667 21.76 9.90 38.90 4.09
4701 7328 3.797353 CACGGGATCCCACCCCAG 61.797 72.222 30.42 15.13 46.62 4.45
4704 7331 4.489771 CAGCACGGGATCCCACCC 62.490 72.222 30.42 16.49 45.92 4.61
4705 7332 3.268103 AACAGCACGGGATCCCACC 62.268 63.158 30.42 16.85 35.37 4.61
4706 7333 2.040544 CAACAGCACGGGATCCCAC 61.041 63.158 30.42 18.44 35.37 4.61
4707 7334 2.350895 CAACAGCACGGGATCCCA 59.649 61.111 30.42 0.00 35.37 4.37
4708 7335 2.040544 CACAACAGCACGGGATCCC 61.041 63.158 22.12 22.12 0.00 3.85
4710 7337 2.690778 GCCACAACAGCACGGGATC 61.691 63.158 0.00 0.00 0.00 3.36
4712 7339 3.872603 AGCCACAACAGCACGGGA 61.873 61.111 0.00 0.00 0.00 5.14
4713 7340 3.663176 CAGCCACAACAGCACGGG 61.663 66.667 0.00 0.00 0.00 5.28
4714 7341 4.332637 GCAGCCACAACAGCACGG 62.333 66.667 0.00 0.00 0.00 4.94
4716 7343 3.218470 TGGCAGCCACAACAGCAC 61.218 61.111 11.22 0.00 0.00 4.40
4750 7377 2.032681 AAGCCTTGGCGACTGGTC 59.967 61.111 5.95 0.00 0.00 4.02
4751 7378 2.032681 GAAGCCTTGGCGACTGGT 59.967 61.111 5.95 0.00 0.00 4.00
4752 7379 2.747855 GGAAGCCTTGGCGACTGG 60.748 66.667 5.95 0.00 0.00 4.00
4753 7380 2.032528 TGGAAGCCTTGGCGACTG 59.967 61.111 5.95 0.00 0.00 3.51
4754 7381 2.032681 GTGGAAGCCTTGGCGACT 59.967 61.111 5.95 0.00 0.00 4.18
4755 7382 3.056328 GGTGGAAGCCTTGGCGAC 61.056 66.667 5.95 4.50 0.00 5.19
4758 7385 1.676967 CAGAGGTGGAAGCCTTGGC 60.677 63.158 2.97 2.97 39.34 4.52
4759 7386 1.676967 GCAGAGGTGGAAGCCTTGG 60.677 63.158 0.00 0.00 39.34 3.61
4761 7388 0.037447 GAAGCAGAGGTGGAAGCCTT 59.963 55.000 0.00 0.00 39.34 4.35
4762 7389 1.682257 GAAGCAGAGGTGGAAGCCT 59.318 57.895 0.00 0.00 42.53 4.58
4763 7390 1.743252 CGAAGCAGAGGTGGAAGCC 60.743 63.158 0.00 0.00 32.25 4.35
4764 7391 3.882025 CGAAGCAGAGGTGGAAGC 58.118 61.111 0.00 0.00 0.00 3.86
4783 7410 3.006756 TAGAGTGTGGCCTCGCTGC 62.007 63.158 24.76 15.47 36.56 5.25
4784 7411 1.153745 GTAGAGTGTGGCCTCGCTG 60.154 63.158 24.76 0.00 36.56 5.18
4785 7412 1.304547 AGTAGAGTGTGGCCTCGCT 60.305 57.895 20.36 20.36 36.56 4.93
4786 7413 1.139947 GAGTAGAGTGTGGCCTCGC 59.860 63.158 10.40 10.40 36.56 5.03
4787 7414 1.066303 GATGAGTAGAGTGTGGCCTCG 59.934 57.143 3.32 0.00 36.56 4.63
4788 7415 2.103373 TGATGAGTAGAGTGTGGCCTC 58.897 52.381 3.32 0.00 0.00 4.70
4789 7416 1.827969 GTGATGAGTAGAGTGTGGCCT 59.172 52.381 3.32 0.00 0.00 5.19
4790 7417 1.134670 GGTGATGAGTAGAGTGTGGCC 60.135 57.143 0.00 0.00 0.00 5.36
4791 7418 1.134670 GGGTGATGAGTAGAGTGTGGC 60.135 57.143 0.00 0.00 0.00 5.01
4793 7420 1.819288 ACGGGTGATGAGTAGAGTGTG 59.181 52.381 0.00 0.00 0.00 3.82
4795 7422 2.358267 GGTACGGGTGATGAGTAGAGTG 59.642 54.545 0.00 0.00 0.00 3.51
4796 7423 2.652590 GGTACGGGTGATGAGTAGAGT 58.347 52.381 0.00 0.00 0.00 3.24
4797 7424 1.955080 GGGTACGGGTGATGAGTAGAG 59.045 57.143 0.00 0.00 0.00 2.43
4798 7425 1.748244 CGGGTACGGGTGATGAGTAGA 60.748 57.143 0.00 0.00 36.18 2.59
4800 7427 1.386525 GCGGGTACGGGTGATGAGTA 61.387 60.000 0.00 0.00 41.36 2.59
4801 7428 2.718073 GCGGGTACGGGTGATGAGT 61.718 63.158 0.00 0.00 41.36 3.41
4803 7430 2.363276 AGCGGGTACGGGTGATGA 60.363 61.111 0.00 0.00 41.36 2.92
4811 7438 4.208686 GAGGAGGCAGCGGGTACG 62.209 72.222 0.00 0.00 44.63 3.67
4812 7439 3.851128 GGAGGAGGCAGCGGGTAC 61.851 72.222 0.00 0.00 0.00 3.34
4813 7440 4.075793 AGGAGGAGGCAGCGGGTA 62.076 66.667 0.00 0.00 0.00 3.69
4816 7443 3.847602 CTCAGGAGGAGGCAGCGG 61.848 72.222 0.00 0.00 40.13 5.52
4817 7444 2.132996 ATCTCAGGAGGAGGCAGCG 61.133 63.158 0.00 0.00 44.19 5.18
4818 7445 1.446791 CATCTCAGGAGGAGGCAGC 59.553 63.158 0.00 0.00 44.19 5.25
4819 7446 1.335882 TGCATCTCAGGAGGAGGCAG 61.336 60.000 0.00 0.00 43.82 4.85
4820 7447 0.911045 TTGCATCTCAGGAGGAGGCA 60.911 55.000 0.00 0.00 46.30 4.75
4821 7448 0.254178 TTTGCATCTCAGGAGGAGGC 59.746 55.000 0.00 0.00 44.19 4.70
4822 7449 1.558756 ACTTTGCATCTCAGGAGGAGG 59.441 52.381 0.00 0.00 44.19 4.30
4823 7450 3.008330 CAACTTTGCATCTCAGGAGGAG 58.992 50.000 0.00 0.00 45.49 3.69
4824 7451 3.063510 CAACTTTGCATCTCAGGAGGA 57.936 47.619 0.00 0.00 0.00 3.71
4838 7465 3.769201 GCAGGAGGCAGCAACTTT 58.231 55.556 0.00 0.00 43.97 2.66
4847 7474 1.823041 GCAGGAAGATGCAGGAGGC 60.823 63.158 0.00 0.00 45.77 4.70
4848 7475 1.523258 CGCAGGAAGATGCAGGAGG 60.523 63.158 0.00 0.00 46.87 4.30
4853 7480 1.519246 CTCCTCGCAGGAAGATGCA 59.481 57.895 6.39 0.00 45.28 3.96
4855 7482 1.227497 GGCTCCTCGCAGGAAGATG 60.227 63.158 6.39 0.00 45.28 2.90
4859 7486 3.706373 GGTGGCTCCTCGCAGGAA 61.706 66.667 6.39 0.00 45.28 3.36
4862 7489 2.738213 AAACTGGTGGCTCCTCGCAG 62.738 60.000 7.19 0.00 41.67 5.18
4864 7491 2.032681 AAACTGGTGGCTCCTCGC 59.967 61.111 7.19 0.00 37.07 5.03
4865 7492 1.376037 GGAAACTGGTGGCTCCTCG 60.376 63.158 7.19 0.88 37.07 4.63
4868 7495 2.359975 CGGGAAACTGGTGGCTCC 60.360 66.667 0.00 0.00 0.00 4.70
4869 7496 3.056328 GCGGGAAACTGGTGGCTC 61.056 66.667 0.00 0.00 37.13 4.70
4871 7498 4.966787 TGGCGGGAAACTGGTGGC 62.967 66.667 0.00 0.00 37.13 5.01
4872 7499 2.672996 CTGGCGGGAAACTGGTGG 60.673 66.667 0.00 0.00 37.13 4.61
4873 7500 3.365265 GCTGGCGGGAAACTGGTG 61.365 66.667 0.00 0.00 37.13 4.17
4874 7501 4.660938 GGCTGGCGGGAAACTGGT 62.661 66.667 0.00 0.00 37.13 4.00


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.