Multiple sequence alignment - TraesCS6D01G011600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G011600 chr6D 100.000 5313 0 0 756 6068 4517118 4522430 0.000000e+00 9812.0
1 TraesCS6D01G011600 chr6D 100.000 377 0 0 1 377 4516363 4516739 0.000000e+00 697.0
2 TraesCS6D01G011600 chr6A 90.231 3030 141 69 823 3756 2924935 2927905 0.000000e+00 3812.0
3 TraesCS6D01G011600 chr6A 90.379 2110 121 40 3763 5830 2927967 2930036 0.000000e+00 2697.0
4 TraesCS6D01G011600 chr6A 89.524 420 23 10 1985 2396 365023700 365023294 4.190000e-141 512.0
5 TraesCS6D01G011600 chr6A 87.619 420 22 14 1985 2396 353056151 353056548 1.540000e-125 460.0
6 TraesCS6D01G011600 chr6A 94.009 217 10 3 5855 6068 2932396 2932612 5.870000e-85 326.0
7 TraesCS6D01G011600 chr6A 91.133 203 8 4 1985 2179 427695451 427695651 3.610000e-67 267.0
8 TraesCS6D01G011600 chr6A 89.286 196 11 4 1985 2172 373048097 373047904 2.830000e-58 237.0
9 TraesCS6D01G011600 chr6A 100.000 38 0 0 1758 1795 41458872 41458909 3.030000e-08 71.3
10 TraesCS6D01G011600 chr6A 100.000 38 0 0 1758 1795 353056115 353056152 3.030000e-08 71.3
11 TraesCS6D01G011600 chr6A 100.000 38 0 0 1758 1795 365023736 365023699 3.030000e-08 71.3
12 TraesCS6D01G011600 chr6B 92.513 2658 110 46 3403 6014 8047508 8044894 0.000000e+00 3723.0
13 TraesCS6D01G011600 chr6B 81.042 2168 186 112 760 2812 8050067 8048010 0.000000e+00 1519.0
14 TraesCS6D01G011600 chr6B 83.958 480 53 15 2875 3344 8047991 8047526 7.220000e-119 438.0
15 TraesCS6D01G011600 chr2D 84.704 1046 79 35 820 1834 603997600 603996605 0.000000e+00 970.0
16 TraesCS6D01G011600 chr2D 93.617 47 2 1 330 376 71563384 71563429 1.090000e-07 69.4
17 TraesCS6D01G011600 chr3A 89.762 420 22 10 1985 2396 114598461 114598867 9.020000e-143 518.0
18 TraesCS6D01G011600 chr3A 88.810 420 26 9 1985 2396 139453591 139453997 4.220000e-136 496.0
19 TraesCS6D01G011600 chr3A 88.333 420 28 10 1985 2396 139479389 139479795 9.140000e-133 484.0
20 TraesCS6D01G011600 chr7A 88.836 421 25 10 1985 2396 734580600 734580193 1.170000e-136 497.0
21 TraesCS6D01G011600 chr2A 88.810 420 25 11 1985 2396 245168177 245168582 4.220000e-136 496.0
22 TraesCS6D01G011600 chr2A 91.626 203 7 4 1985 2179 739652342 739652142 7.750000e-69 272.0
23 TraesCS6D01G011600 chr4A 88.889 405 22 9 1985 2381 738305385 738304996 1.530000e-130 477.0
24 TraesCS6D01G011600 chr3B 88.452 407 25 10 1985 2381 334534766 334534372 7.120000e-129 472.0
25 TraesCS6D01G011600 chrUn 87.901 405 27 9 1985 2381 168696739 168696349 1.990000e-124 457.0
26 TraesCS6D01G011600 chrUn 100.000 38 0 0 1758 1795 168696775 168696738 3.030000e-08 71.3
27 TraesCS6D01G011600 chrUn 100.000 38 0 0 1758 1795 237061577 237061614 3.030000e-08 71.3
28 TraesCS6D01G011600 chrUn 100.000 38 0 0 1758 1795 380010914 380010951 3.030000e-08 71.3
29 TraesCS6D01G011600 chr5A 91.626 203 7 4 1985 2179 560031233 560031033 7.750000e-69 272.0
30 TraesCS6D01G011600 chr5A 89.286 196 10 4 1985 2172 155386990 155387182 1.020000e-57 235.0
31 TraesCS6D01G011600 chr1A 100.000 38 0 0 1758 1795 87311000 87310963 3.030000e-08 71.3
32 TraesCS6D01G011600 chr4D 89.091 55 5 1 322 376 381137246 381137299 3.930000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G011600 chr6D 4516363 4522430 6067 False 5254.500000 9812 100.000000 1 6068 2 chr6D.!!$F1 6067
1 TraesCS6D01G011600 chr6A 2924935 2932612 7677 False 2278.333333 3812 91.539667 823 6068 3 chr6A.!!$F3 5245
2 TraesCS6D01G011600 chr6B 8044894 8050067 5173 True 1893.333333 3723 85.837667 760 6014 3 chr6B.!!$R1 5254
3 TraesCS6D01G011600 chr2D 603996605 603997600 995 True 970.000000 970 84.704000 820 1834 1 chr2D.!!$R1 1014

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
865 898 0.034670 GCCAGAGTCATTTCCCAGCT 60.035 55.000 0.00 0.0 0.00 4.24 F
1294 1403 0.397941 CAACACCAGCTCCTCTTCCA 59.602 55.000 0.00 0.0 0.00 3.53 F
2316 2505 1.344438 ACAGTAGTAGCAGCAGCAACA 59.656 47.619 3.17 0.0 45.49 3.33 F
3812 4175 0.326264 GCAAGAAGGGCTCTGAGGAA 59.674 55.000 6.83 0.0 33.37 3.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2610 2860 0.323087 TGCTGTCTTGCTGCATCCAT 60.323 50.0 1.84 0.0 45.14 3.41 R
3011 3282 0.249489 GCCCGTACATAGGTGCTCAG 60.249 60.0 0.00 0.0 0.00 3.35 R
4156 4539 0.969149 CTCCAAAGAAGCCCCAAACC 59.031 55.0 0.00 0.0 0.00 3.27 R
5361 5761 0.455633 GCACAAGAGATGCAAAGGCG 60.456 55.0 0.00 0.0 45.35 5.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.267961 GGTGGTGGAACTAGGCGG 59.732 66.667 0.00 0.00 36.74 6.13
18 19 2.590114 GGTGGTGGAACTAGGCGGT 61.590 63.158 0.00 0.00 36.74 5.68
19 20 1.375523 GTGGTGGAACTAGGCGGTG 60.376 63.158 0.00 0.00 36.74 4.94
20 21 2.267961 GGTGGAACTAGGCGGTGG 59.732 66.667 0.00 0.00 36.74 4.61
21 22 2.267961 GTGGAACTAGGCGGTGGG 59.732 66.667 0.00 0.00 0.00 4.61
22 23 3.712907 TGGAACTAGGCGGTGGGC 61.713 66.667 0.00 0.00 42.51 5.36
23 24 4.832608 GGAACTAGGCGGTGGGCG 62.833 72.222 0.00 0.00 44.92 6.13
24 25 3.766691 GAACTAGGCGGTGGGCGA 61.767 66.667 0.00 0.00 44.92 5.54
25 26 3.718210 GAACTAGGCGGTGGGCGAG 62.718 68.421 0.00 0.00 45.13 5.03
60 61 4.096003 CGGGTGGGGCTGTAGGTG 62.096 72.222 0.00 0.00 0.00 4.00
61 62 3.728373 GGGTGGGGCTGTAGGTGG 61.728 72.222 0.00 0.00 0.00 4.61
62 63 2.609610 GGTGGGGCTGTAGGTGGA 60.610 66.667 0.00 0.00 0.00 4.02
63 64 2.670148 GGTGGGGCTGTAGGTGGAG 61.670 68.421 0.00 0.00 0.00 3.86
64 65 3.009115 TGGGGCTGTAGGTGGAGC 61.009 66.667 0.00 0.00 34.23 4.70
65 66 3.009115 GGGGCTGTAGGTGGAGCA 61.009 66.667 0.00 0.00 36.90 4.26
66 67 2.602676 GGGGCTGTAGGTGGAGCAA 61.603 63.158 0.00 0.00 36.90 3.91
67 68 1.078143 GGGCTGTAGGTGGAGCAAG 60.078 63.158 0.00 0.00 36.90 4.01
68 69 1.078143 GGCTGTAGGTGGAGCAAGG 60.078 63.158 0.00 0.00 36.90 3.61
69 70 1.746991 GCTGTAGGTGGAGCAAGGC 60.747 63.158 0.00 0.00 35.15 4.35
70 71 1.679311 CTGTAGGTGGAGCAAGGCA 59.321 57.895 0.00 0.00 0.00 4.75
71 72 0.254178 CTGTAGGTGGAGCAAGGCAT 59.746 55.000 0.00 0.00 0.00 4.40
72 73 0.253044 TGTAGGTGGAGCAAGGCATC 59.747 55.000 0.00 0.00 0.00 3.91
73 74 0.811616 GTAGGTGGAGCAAGGCATCG 60.812 60.000 0.00 0.00 0.00 3.84
74 75 1.971505 TAGGTGGAGCAAGGCATCGG 61.972 60.000 0.00 0.00 0.00 4.18
75 76 2.825836 GTGGAGCAAGGCATCGGG 60.826 66.667 0.00 0.00 0.00 5.14
76 77 4.113815 TGGAGCAAGGCATCGGGG 62.114 66.667 0.00 0.00 0.00 5.73
77 78 3.797353 GGAGCAAGGCATCGGGGA 61.797 66.667 0.00 0.00 0.00 4.81
78 79 2.512896 GAGCAAGGCATCGGGGAT 59.487 61.111 0.00 0.00 0.00 3.85
79 80 1.895707 GAGCAAGGCATCGGGGATG 60.896 63.158 1.29 1.29 42.37 3.51
115 116 2.107141 GGACGAATCCAGCTCCGG 59.893 66.667 0.00 0.00 45.47 5.14
116 117 2.107141 GACGAATCCAGCTCCGGG 59.893 66.667 0.00 0.00 0.00 5.73
117 118 4.162690 ACGAATCCAGCTCCGGGC 62.163 66.667 0.00 3.80 42.19 6.13
155 156 2.441023 GGAAAAACGCCCGATTTGC 58.559 52.632 0.00 0.00 0.00 3.68
156 157 0.319125 GGAAAAACGCCCGATTTGCA 60.319 50.000 4.21 0.00 0.00 4.08
157 158 1.059942 GAAAAACGCCCGATTTGCAG 58.940 50.000 0.00 0.00 0.00 4.41
158 159 0.943835 AAAAACGCCCGATTTGCAGC 60.944 50.000 0.00 0.00 0.00 5.25
161 162 4.817063 CGCCCGATTTGCAGCGTG 62.817 66.667 7.52 0.00 43.45 5.34
182 183 4.659172 CGGGGGCCAGCTGTTGAA 62.659 66.667 13.81 0.00 0.00 2.69
183 184 2.203625 GGGGGCCAGCTGTTGAAA 60.204 61.111 13.81 0.00 0.00 2.69
184 185 2.574018 GGGGGCCAGCTGTTGAAAC 61.574 63.158 13.81 0.00 0.00 2.78
185 186 2.644992 GGGCCAGCTGTTGAAACG 59.355 61.111 13.81 0.00 0.00 3.60
186 187 2.050077 GGCCAGCTGTTGAAACGC 60.050 61.111 13.81 6.64 0.00 4.84
187 188 2.427410 GCCAGCTGTTGAAACGCG 60.427 61.111 13.81 3.53 34.98 6.01
188 189 2.252260 CCAGCTGTTGAAACGCGG 59.748 61.111 12.47 0.00 34.98 6.46
189 190 2.427410 CAGCTGTTGAAACGCGGC 60.427 61.111 12.47 0.36 34.98 6.53
190 191 4.012895 AGCTGTTGAAACGCGGCG 62.013 61.111 22.36 22.36 34.98 6.46
192 193 3.342627 CTGTTGAAACGCGGCGGA 61.343 61.111 27.37 4.40 0.00 5.54
193 194 2.887889 CTGTTGAAACGCGGCGGAA 61.888 57.895 27.37 10.52 0.00 4.30
194 195 2.426261 GTTGAAACGCGGCGGAAC 60.426 61.111 27.37 17.92 0.00 3.62
195 196 2.589442 TTGAAACGCGGCGGAACT 60.589 55.556 27.37 7.41 0.00 3.01
196 197 2.887889 TTGAAACGCGGCGGAACTG 61.888 57.895 27.37 0.00 0.00 3.16
197 198 4.084888 GAAACGCGGCGGAACTGG 62.085 66.667 27.37 0.00 0.00 4.00
221 222 4.741239 GGGTGCTGGAGGGGGAGA 62.741 72.222 0.00 0.00 0.00 3.71
222 223 2.610859 GGTGCTGGAGGGGGAGAA 60.611 66.667 0.00 0.00 0.00 2.87
223 224 2.003548 GGTGCTGGAGGGGGAGAAT 61.004 63.158 0.00 0.00 0.00 2.40
224 225 1.529309 GTGCTGGAGGGGGAGAATC 59.471 63.158 0.00 0.00 0.00 2.52
225 226 0.985490 GTGCTGGAGGGGGAGAATCT 60.985 60.000 0.00 0.00 33.73 2.40
226 227 0.984961 TGCTGGAGGGGGAGAATCTG 60.985 60.000 0.00 0.00 33.73 2.90
227 228 1.704007 GCTGGAGGGGGAGAATCTGG 61.704 65.000 0.00 0.00 33.73 3.86
228 229 1.694169 TGGAGGGGGAGAATCTGGC 60.694 63.158 0.00 0.00 33.73 4.85
229 230 2.812619 GGAGGGGGAGAATCTGGCG 61.813 68.421 0.00 0.00 33.73 5.69
230 231 3.468326 GAGGGGGAGAATCTGGCGC 62.468 68.421 0.00 0.00 33.73 6.53
231 232 4.918201 GGGGGAGAATCTGGCGCG 62.918 72.222 0.00 0.00 33.73 6.86
232 233 4.918201 GGGGAGAATCTGGCGCGG 62.918 72.222 8.83 0.00 33.73 6.46
233 234 4.918201 GGGAGAATCTGGCGCGGG 62.918 72.222 8.83 0.00 33.73 6.13
234 235 4.918201 GGAGAATCTGGCGCGGGG 62.918 72.222 8.83 0.00 33.73 5.73
235 236 4.162690 GAGAATCTGGCGCGGGGT 62.163 66.667 8.83 0.00 0.00 4.95
236 237 4.473520 AGAATCTGGCGCGGGGTG 62.474 66.667 8.83 0.00 0.00 4.61
265 266 4.954970 CAAGTGGGCGGTGGCAGT 62.955 66.667 0.00 0.00 42.47 4.40
266 267 4.954970 AAGTGGGCGGTGGCAGTG 62.955 66.667 0.00 0.00 42.47 3.66
288 289 3.327404 GGGCGGTGGGAGGAAGAA 61.327 66.667 0.00 0.00 0.00 2.52
289 290 2.680370 GGGCGGTGGGAGGAAGAAT 61.680 63.158 0.00 0.00 0.00 2.40
290 291 1.342672 GGGCGGTGGGAGGAAGAATA 61.343 60.000 0.00 0.00 0.00 1.75
291 292 0.765510 GGCGGTGGGAGGAAGAATAT 59.234 55.000 0.00 0.00 0.00 1.28
292 293 1.543429 GGCGGTGGGAGGAAGAATATG 60.543 57.143 0.00 0.00 0.00 1.78
293 294 1.543429 GCGGTGGGAGGAAGAATATGG 60.543 57.143 0.00 0.00 0.00 2.74
294 295 1.072331 CGGTGGGAGGAAGAATATGGG 59.928 57.143 0.00 0.00 0.00 4.00
295 296 1.425448 GGTGGGAGGAAGAATATGGGG 59.575 57.143 0.00 0.00 0.00 4.96
296 297 2.136026 GTGGGAGGAAGAATATGGGGT 58.864 52.381 0.00 0.00 0.00 4.95
297 298 2.514160 GTGGGAGGAAGAATATGGGGTT 59.486 50.000 0.00 0.00 0.00 4.11
298 299 3.720002 GTGGGAGGAAGAATATGGGGTTA 59.280 47.826 0.00 0.00 0.00 2.85
299 300 3.980698 TGGGAGGAAGAATATGGGGTTAG 59.019 47.826 0.00 0.00 0.00 2.34
300 301 3.330998 GGGAGGAAGAATATGGGGTTAGG 59.669 52.174 0.00 0.00 0.00 2.69
301 302 3.330998 GGAGGAAGAATATGGGGTTAGGG 59.669 52.174 0.00 0.00 0.00 3.53
302 303 3.330998 GAGGAAGAATATGGGGTTAGGGG 59.669 52.174 0.00 0.00 0.00 4.79
303 304 3.049778 AGGAAGAATATGGGGTTAGGGGA 60.050 47.826 0.00 0.00 0.00 4.81
304 305 3.725267 GGAAGAATATGGGGTTAGGGGAA 59.275 47.826 0.00 0.00 0.00 3.97
305 306 4.202577 GGAAGAATATGGGGTTAGGGGAAG 60.203 50.000 0.00 0.00 0.00 3.46
306 307 3.336676 AGAATATGGGGTTAGGGGAAGG 58.663 50.000 0.00 0.00 0.00 3.46
307 308 3.049778 AGAATATGGGGTTAGGGGAAGGA 60.050 47.826 0.00 0.00 0.00 3.36
308 309 2.995765 TATGGGGTTAGGGGAAGGAA 57.004 50.000 0.00 0.00 0.00 3.36
309 310 2.084121 ATGGGGTTAGGGGAAGGAAA 57.916 50.000 0.00 0.00 0.00 3.13
310 311 1.378732 TGGGGTTAGGGGAAGGAAAG 58.621 55.000 0.00 0.00 0.00 2.62
311 312 0.629596 GGGGTTAGGGGAAGGAAAGG 59.370 60.000 0.00 0.00 0.00 3.11
312 313 0.629596 GGGTTAGGGGAAGGAAAGGG 59.370 60.000 0.00 0.00 0.00 3.95
313 314 1.677490 GGTTAGGGGAAGGAAAGGGA 58.323 55.000 0.00 0.00 0.00 4.20
314 315 1.997791 GGTTAGGGGAAGGAAAGGGAA 59.002 52.381 0.00 0.00 0.00 3.97
315 316 2.291411 GGTTAGGGGAAGGAAAGGGAAC 60.291 54.545 0.00 0.00 0.00 3.62
316 317 2.377531 GTTAGGGGAAGGAAAGGGAACA 59.622 50.000 0.00 0.00 0.00 3.18
317 318 1.076438 AGGGGAAGGAAAGGGAACAG 58.924 55.000 0.00 0.00 0.00 3.16
318 319 0.612174 GGGGAAGGAAAGGGAACAGC 60.612 60.000 0.00 0.00 0.00 4.40
319 320 0.960861 GGGAAGGAAAGGGAACAGCG 60.961 60.000 0.00 0.00 0.00 5.18
320 321 0.960861 GGAAGGAAAGGGAACAGCGG 60.961 60.000 0.00 0.00 0.00 5.52
321 322 0.250770 GAAGGAAAGGGAACAGCGGT 60.251 55.000 0.00 0.00 0.00 5.68
322 323 0.185175 AAGGAAAGGGAACAGCGGTT 59.815 50.000 0.50 0.50 40.76 4.44
323 324 0.537371 AGGAAAGGGAACAGCGGTTG 60.537 55.000 7.05 0.00 37.36 3.77
324 325 1.524008 GGAAAGGGAACAGCGGTTGG 61.524 60.000 7.05 0.00 37.36 3.77
325 326 2.142357 GAAAGGGAACAGCGGTTGGC 62.142 60.000 7.05 0.00 37.36 4.52
784 785 3.012518 CAAATGGCAGCAGTACTAGCTT 58.987 45.455 14.64 1.67 41.14 3.74
789 790 1.596727 GCAGCAGTACTAGCTTGCATC 59.403 52.381 21.64 0.00 41.14 3.91
795 803 4.421058 CAGTACTAGCTTGCATCGTTACA 58.579 43.478 0.00 0.00 0.00 2.41
800 808 2.009774 AGCTTGCATCGTTACACATCC 58.990 47.619 0.00 0.00 0.00 3.51
817 825 4.222588 CACATCCAGGTCTTTCTCTCTCTT 59.777 45.833 0.00 0.00 0.00 2.85
856 889 4.022589 CACTTTGTCAATTGCCAGAGTCAT 60.023 41.667 9.47 0.00 0.00 3.06
857 890 4.586001 ACTTTGTCAATTGCCAGAGTCATT 59.414 37.500 6.83 0.00 0.00 2.57
858 891 5.069516 ACTTTGTCAATTGCCAGAGTCATTT 59.930 36.000 6.83 0.00 0.00 2.32
859 892 4.771590 TGTCAATTGCCAGAGTCATTTC 57.228 40.909 0.00 0.00 0.00 2.17
860 893 3.507233 TGTCAATTGCCAGAGTCATTTCC 59.493 43.478 0.00 0.00 0.00 3.13
861 894 3.091545 TCAATTGCCAGAGTCATTTCCC 58.908 45.455 0.00 0.00 0.00 3.97
862 895 2.827322 CAATTGCCAGAGTCATTTCCCA 59.173 45.455 0.00 0.00 0.00 4.37
863 896 2.205022 TTGCCAGAGTCATTTCCCAG 57.795 50.000 0.00 0.00 0.00 4.45
864 897 0.322816 TGCCAGAGTCATTTCCCAGC 60.323 55.000 0.00 0.00 0.00 4.85
865 898 0.034670 GCCAGAGTCATTTCCCAGCT 60.035 55.000 0.00 0.00 0.00 4.24
866 899 1.210478 GCCAGAGTCATTTCCCAGCTA 59.790 52.381 0.00 0.00 0.00 3.32
869 902 1.488393 AGAGTCATTTCCCAGCTAGCC 59.512 52.381 12.13 0.00 0.00 3.93
875 908 0.905357 TTTCCCAGCTAGCCAGTCTC 59.095 55.000 12.13 0.00 0.00 3.36
881 914 1.092921 AGCTAGCCAGTCTCGAGTCG 61.093 60.000 12.13 6.09 0.00 4.18
896 929 1.925185 GAGTCGTTCAATTCGGTAGCC 59.075 52.381 0.00 0.00 0.00 3.93
919 960 1.136565 GCCACACACACACACACAC 59.863 57.895 0.00 0.00 0.00 3.82
989 1030 2.203938 TCACCCTCACCCTCACCC 60.204 66.667 0.00 0.00 0.00 4.61
990 1031 2.203998 CACCCTCACCCTCACCCT 60.204 66.667 0.00 0.00 0.00 4.34
991 1032 2.122954 ACCCTCACCCTCACCCTC 59.877 66.667 0.00 0.00 0.00 4.30
992 1033 2.122729 CCCTCACCCTCACCCTCA 59.877 66.667 0.00 0.00 0.00 3.86
995 1036 2.203938 TCACCCTCACCCTCACCC 60.204 66.667 0.00 0.00 0.00 4.61
996 1037 2.203998 CACCCTCACCCTCACCCT 60.204 66.667 0.00 0.00 0.00 4.34
998 1039 2.122729 CCCTCACCCTCACCCTCA 59.877 66.667 0.00 0.00 0.00 3.86
999 1040 2.294078 CCCTCACCCTCACCCTCAC 61.294 68.421 0.00 0.00 0.00 3.51
1000 1041 2.294078 CCTCACCCTCACCCTCACC 61.294 68.421 0.00 0.00 0.00 4.02
1001 1042 1.536418 CTCACCCTCACCCTCACCA 60.536 63.158 0.00 0.00 0.00 4.17
1002 1043 1.074090 TCACCCTCACCCTCACCAA 60.074 57.895 0.00 0.00 0.00 3.67
1003 1044 0.696143 TCACCCTCACCCTCACCAAA 60.696 55.000 0.00 0.00 0.00 3.28
1140 1216 3.412386 AGGGAGAAGAATTTGTTGTCGG 58.588 45.455 0.00 0.00 0.00 4.79
1141 1217 3.146847 GGGAGAAGAATTTGTTGTCGGT 58.853 45.455 0.00 0.00 0.00 4.69
1142 1218 3.188667 GGGAGAAGAATTTGTTGTCGGTC 59.811 47.826 0.00 0.00 0.00 4.79
1143 1219 4.065789 GGAGAAGAATTTGTTGTCGGTCT 58.934 43.478 0.00 0.00 0.00 3.85
1144 1220 4.152580 GGAGAAGAATTTGTTGTCGGTCTC 59.847 45.833 0.00 0.00 32.96 3.36
1145 1221 4.962155 AGAAGAATTTGTTGTCGGTCTCT 58.038 39.130 0.00 0.00 0.00 3.10
1146 1222 5.368989 AGAAGAATTTGTTGTCGGTCTCTT 58.631 37.500 0.00 0.00 0.00 2.85
1147 1223 5.467063 AGAAGAATTTGTTGTCGGTCTCTTC 59.533 40.000 0.00 0.00 38.42 2.87
1148 1224 4.962155 AGAATTTGTTGTCGGTCTCTTCT 58.038 39.130 0.00 0.00 0.00 2.85
1149 1225 5.368989 AGAATTTGTTGTCGGTCTCTTCTT 58.631 37.500 0.00 0.00 0.00 2.52
1150 1226 5.237344 AGAATTTGTTGTCGGTCTCTTCTTG 59.763 40.000 0.00 0.00 0.00 3.02
1151 1227 1.865865 TGTTGTCGGTCTCTTCTTGC 58.134 50.000 0.00 0.00 0.00 4.01
1152 1228 1.138069 TGTTGTCGGTCTCTTCTTGCA 59.862 47.619 0.00 0.00 0.00 4.08
1153 1229 2.224281 TGTTGTCGGTCTCTTCTTGCAT 60.224 45.455 0.00 0.00 0.00 3.96
1154 1230 2.370281 TGTCGGTCTCTTCTTGCATC 57.630 50.000 0.00 0.00 0.00 3.91
1155 1231 1.272781 GTCGGTCTCTTCTTGCATCG 58.727 55.000 0.00 0.00 0.00 3.84
1157 1233 1.135373 TCGGTCTCTTCTTGCATCGAC 60.135 52.381 0.00 0.00 0.00 4.20
1160 1236 0.537188 TCTCTTCTTGCATCGACCCC 59.463 55.000 0.00 0.00 0.00 4.95
1164 1240 2.202932 CTTGCATCGACCCCCTCG 60.203 66.667 0.00 0.00 44.44 4.63
1170 1246 3.976490 ATCGACCCCCTCGGCAAGA 62.976 63.158 0.00 0.00 43.16 3.02
1181 1257 2.288518 CCTCGGCAAGATTACCTAGCTC 60.289 54.545 0.00 0.00 0.00 4.09
1182 1258 2.625790 CTCGGCAAGATTACCTAGCTCT 59.374 50.000 0.00 0.00 0.00 4.09
1197 1286 6.668645 ACCTAGCTCTCTTCTTCATCTCTTA 58.331 40.000 0.00 0.00 0.00 2.10
1212 1318 4.308899 TCTCTTAGCCAGCTTCGATTAC 57.691 45.455 0.00 0.00 0.00 1.89
1290 1399 1.123861 TCAGCAACACCAGCTCCTCT 61.124 55.000 0.00 0.00 41.14 3.69
1294 1403 0.397941 CAACACCAGCTCCTCTTCCA 59.602 55.000 0.00 0.00 0.00 3.53
1299 1408 2.604686 AGCTCCTCTTCCACGCCA 60.605 61.111 0.00 0.00 0.00 5.69
1302 1411 3.316573 CTCCTCTTCCACGCCACCC 62.317 68.421 0.00 0.00 0.00 4.61
1396 1516 1.519455 CTAGGGTTTCTGCGAGCCG 60.519 63.158 0.00 0.00 39.60 5.52
1701 1833 4.496336 AGGGCTCCAAGGATGCGC 62.496 66.667 0.00 0.00 39.46 6.09
1841 1982 8.814235 CAAGATCATTAATTTCCATGAAGTTGC 58.186 33.333 0.00 0.00 33.13 4.17
1899 2040 7.935338 AGCTGAATTTGTTAGTGATGTTTTG 57.065 32.000 0.00 0.00 0.00 2.44
2087 2241 9.565090 TCTTGTTCTATATATGCTGCATTTCTT 57.435 29.630 21.56 7.01 0.00 2.52
2099 2253 4.560108 GCTGCATTTCTTGTTCCTGATGTT 60.560 41.667 0.00 0.00 0.00 2.71
2149 2310 1.478510 TGGCAGTGTAGCTAGCTTCTC 59.521 52.381 24.88 18.30 34.17 2.87
2261 2447 6.816136 TCGTATGAGCAGATAAATCCTGAAA 58.184 36.000 0.00 0.00 33.65 2.69
2300 2489 6.894682 AGAGAAGAAGAAAGGAAAGAACAGT 58.105 36.000 0.00 0.00 0.00 3.55
2302 2491 8.147704 AGAGAAGAAGAAAGGAAAGAACAGTAG 58.852 37.037 0.00 0.00 0.00 2.57
2303 2492 7.797062 AGAAGAAGAAAGGAAAGAACAGTAGT 58.203 34.615 0.00 0.00 0.00 2.73
2304 2493 8.925338 AGAAGAAGAAAGGAAAGAACAGTAGTA 58.075 33.333 0.00 0.00 0.00 1.82
2305 2494 9.198837 GAAGAAGAAAGGAAAGAACAGTAGTAG 57.801 37.037 0.00 0.00 0.00 2.57
2306 2495 7.156000 AGAAGAAAGGAAAGAACAGTAGTAGC 58.844 38.462 0.00 0.00 0.00 3.58
2307 2496 6.420913 AGAAAGGAAAGAACAGTAGTAGCA 57.579 37.500 0.00 0.00 0.00 3.49
2308 2497 6.459923 AGAAAGGAAAGAACAGTAGTAGCAG 58.540 40.000 0.00 0.00 0.00 4.24
2309 2498 4.195225 AGGAAAGAACAGTAGTAGCAGC 57.805 45.455 0.00 0.00 0.00 5.25
2310 2499 3.578716 AGGAAAGAACAGTAGTAGCAGCA 59.421 43.478 0.00 0.00 0.00 4.41
2311 2500 3.929610 GGAAAGAACAGTAGTAGCAGCAG 59.070 47.826 0.00 0.00 0.00 4.24
2312 2501 2.663826 AGAACAGTAGTAGCAGCAGC 57.336 50.000 0.00 0.00 42.56 5.25
2313 2502 1.895798 AGAACAGTAGTAGCAGCAGCA 59.104 47.619 3.17 0.00 45.49 4.41
2314 2503 2.300152 AGAACAGTAGTAGCAGCAGCAA 59.700 45.455 3.17 0.00 45.49 3.91
2315 2504 2.086054 ACAGTAGTAGCAGCAGCAAC 57.914 50.000 3.17 0.00 45.49 4.17
2316 2505 1.344438 ACAGTAGTAGCAGCAGCAACA 59.656 47.619 3.17 0.00 45.49 3.33
2367 2567 4.204799 TGATCTAGCTTCTGCATGCATTT 58.795 39.130 22.97 7.73 42.74 2.32
2572 2807 2.662866 TGCACCGGTCTTAGCTATACT 58.337 47.619 2.59 0.00 0.00 2.12
2600 2835 6.518493 TGAAAGAAATCAATGCAAGCTTTCT 58.482 32.000 12.73 12.73 39.99 2.52
2606 2841 7.384387 AGAAATCAATGCAAGCTTTCTCTTTTC 59.616 33.333 12.73 1.52 32.23 2.29
2610 2860 7.715657 TCAATGCAAGCTTTCTCTTTTCTAAA 58.284 30.769 0.00 0.00 0.00 1.85
2611 2861 8.362639 TCAATGCAAGCTTTCTCTTTTCTAAAT 58.637 29.630 0.00 0.00 0.00 1.40
2612 2862 8.433126 CAATGCAAGCTTTCTCTTTTCTAAATG 58.567 33.333 0.00 0.00 0.00 2.32
2613 2863 6.449698 TGCAAGCTTTCTCTTTTCTAAATGG 58.550 36.000 0.00 0.00 0.00 3.16
2614 2864 6.265196 TGCAAGCTTTCTCTTTTCTAAATGGA 59.735 34.615 0.00 0.00 0.00 3.41
2615 2865 7.039504 TGCAAGCTTTCTCTTTTCTAAATGGAT 60.040 33.333 0.00 0.00 0.00 3.41
2616 2866 7.275123 GCAAGCTTTCTCTTTTCTAAATGGATG 59.725 37.037 0.00 0.00 0.00 3.51
2617 2867 6.861144 AGCTTTCTCTTTTCTAAATGGATGC 58.139 36.000 0.00 0.00 0.00 3.91
2618 2868 6.435277 AGCTTTCTCTTTTCTAAATGGATGCA 59.565 34.615 0.00 0.00 0.00 3.96
2619 2869 6.750963 GCTTTCTCTTTTCTAAATGGATGCAG 59.249 38.462 0.00 0.00 0.00 4.41
2622 2872 5.711506 TCTCTTTTCTAAATGGATGCAGCAA 59.288 36.000 3.51 0.00 0.00 3.91
2674 2932 3.430929 GGATTCGTACCTCTGAATGCACT 60.431 47.826 7.51 0.00 41.08 4.40
2675 2933 4.202121 GGATTCGTACCTCTGAATGCACTA 60.202 45.833 7.51 0.00 41.08 2.74
2745 3011 7.489160 TGGTAAATGCATGTCTGTAGTACTAG 58.511 38.462 1.87 0.00 0.00 2.57
2750 3017 7.825331 ATGCATGTCTGTAGTACTAGTATGT 57.175 36.000 5.75 0.00 0.00 2.29
2751 3018 7.027778 TGCATGTCTGTAGTACTAGTATGTG 57.972 40.000 5.75 0.40 0.00 3.21
2778 3045 7.005062 ACTCGTATCACAAATCATTGCTAAC 57.995 36.000 0.00 0.00 40.34 2.34
2780 3047 7.003939 TCGTATCACAAATCATTGCTAACTG 57.996 36.000 0.00 0.00 40.34 3.16
2784 3051 9.490663 GTATCACAAATCATTGCTAACTGTAAC 57.509 33.333 0.00 0.00 40.34 2.50
2824 3092 2.424956 GGCTGATAGCAGTCCCTTTTTG 59.575 50.000 10.15 0.00 44.75 2.44
2869 3137 8.551205 CAAAATCATTAGTCGCATTAAGAGCTA 58.449 33.333 0.00 0.00 0.00 3.32
2884 3152 8.494347 CATTAAGAGCTAATAGATGCACAAGTC 58.506 37.037 0.00 0.00 0.00 3.01
2970 3241 1.695242 AGTACCGACAAACCCATGACA 59.305 47.619 0.00 0.00 0.00 3.58
3035 3306 0.387929 CACCTATGTACGGGCACGAT 59.612 55.000 19.19 0.00 44.60 3.73
3062 3333 6.692681 TGCCGTAGTTGTATTTATTCGAGTAC 59.307 38.462 0.00 0.00 0.00 2.73
3245 3516 1.613437 GCAGCAGTTACAATGGTGGTT 59.387 47.619 5.64 0.00 44.36 3.67
3438 3717 1.761174 GGGAGGGCACAACTTCTCA 59.239 57.895 0.00 0.00 0.00 3.27
3558 3837 9.467796 TGTAGTAGTAGACAGTACTGTAGTAGA 57.532 37.037 27.98 14.38 45.05 2.59
3598 3889 1.065998 TGCATGCAGCTGTAGATGACA 60.066 47.619 18.46 13.29 45.94 3.58
3599 3890 2.219458 GCATGCAGCTGTAGATGACAT 58.781 47.619 16.64 5.24 41.15 3.06
3600 3891 3.181463 TGCATGCAGCTGTAGATGACATA 60.181 43.478 18.46 1.55 45.94 2.29
3601 3892 4.001652 GCATGCAGCTGTAGATGACATAT 58.998 43.478 16.64 0.00 41.15 1.78
3639 3930 3.665745 ACATTTGGATGTTTGCCTGAC 57.334 42.857 0.00 0.00 43.92 3.51
3684 3975 5.509670 GCTCCCATTTCTGTTTGTTTTAGCT 60.510 40.000 0.00 0.00 0.00 3.32
3703 3994 1.615883 CTACACAGAGACACAGTGGCT 59.384 52.381 9.35 9.35 39.41 4.75
3704 3995 1.704641 ACACAGAGACACAGTGGCTA 58.295 50.000 9.62 0.00 34.53 3.93
3705 3996 2.251818 ACACAGAGACACAGTGGCTAT 58.748 47.619 9.62 2.22 34.53 2.97
3706 3997 2.232452 ACACAGAGACACAGTGGCTATC 59.768 50.000 9.62 0.00 34.53 2.08
3707 3998 2.495270 CACAGAGACACAGTGGCTATCT 59.505 50.000 9.62 0.00 34.53 1.98
3708 3999 2.757868 ACAGAGACACAGTGGCTATCTC 59.242 50.000 9.62 9.75 34.53 2.75
3709 4000 3.023119 CAGAGACACAGTGGCTATCTCT 58.977 50.000 9.62 11.98 45.49 3.10
3710 4001 3.066621 CAGAGACACAGTGGCTATCTCTC 59.933 52.174 9.62 8.63 43.33 3.20
3711 4002 3.053693 AGAGACACAGTGGCTATCTCTCT 60.054 47.826 9.62 10.87 41.84 3.10
3712 4003 3.287222 AGACACAGTGGCTATCTCTCTC 58.713 50.000 7.32 0.00 30.85 3.20
3713 4004 3.053693 AGACACAGTGGCTATCTCTCTCT 60.054 47.826 7.32 0.00 30.85 3.10
3714 4005 3.287222 ACACAGTGGCTATCTCTCTCTC 58.713 50.000 5.31 0.00 0.00 3.20
3715 4006 3.053693 ACACAGTGGCTATCTCTCTCTCT 60.054 47.826 5.31 0.00 0.00 3.10
3716 4007 3.565482 CACAGTGGCTATCTCTCTCTCTC 59.435 52.174 0.00 0.00 0.00 3.20
3717 4008 3.459598 ACAGTGGCTATCTCTCTCTCTCT 59.540 47.826 0.00 0.00 0.00 3.10
3718 4009 4.067896 CAGTGGCTATCTCTCTCTCTCTC 58.932 52.174 0.00 0.00 0.00 3.20
3725 4016 5.337169 GCTATCTCTCTCTCTCTCTCTCTCC 60.337 52.000 0.00 0.00 0.00 3.71
3766 4129 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
3767 4130 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
3768 4131 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
3769 4132 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
3770 4133 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
3771 4134 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
3772 4135 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
3811 4174 0.837691 TGCAAGAAGGGCTCTGAGGA 60.838 55.000 6.83 0.00 33.37 3.71
3812 4175 0.326264 GCAAGAAGGGCTCTGAGGAA 59.674 55.000 6.83 0.00 33.37 3.36
3946 4309 0.398318 AAGTTGGTCCTCTCCACTGC 59.602 55.000 0.00 0.00 37.20 4.40
3962 4325 1.407721 CTGCGCATTTTGCATGGACG 61.408 55.000 12.24 0.00 45.36 4.79
4198 4581 7.497249 GGAGTTGCTCAAGAATCATACTATTGT 59.503 37.037 0.00 0.00 31.08 2.71
4448 4836 9.221775 GGCATAATTGTGACTAAATACTTTTCG 57.778 33.333 6.35 0.00 0.00 3.46
4558 4948 5.700832 ACAGTGTCACAAGGTAACACATATG 59.299 40.000 5.62 0.00 44.46 1.78
4922 5316 4.160439 TCAGTCTCCTCCATTATGTGTGTC 59.840 45.833 0.00 0.00 0.00 3.67
4929 5323 4.318332 CTCCATTATGTGTGTCTGTGTGT 58.682 43.478 0.00 0.00 0.00 3.72
4933 5327 1.679139 ATGTGTGTCTGTGTGTTGGG 58.321 50.000 0.00 0.00 0.00 4.12
4934 5328 0.615850 TGTGTGTCTGTGTGTTGGGA 59.384 50.000 0.00 0.00 0.00 4.37
4939 5333 1.140852 TGTCTGTGTGTTGGGAAGAGG 59.859 52.381 0.00 0.00 0.00 3.69
4982 5376 5.674525 CTTGCTAGAGAGAGAGAGAGAGAA 58.325 45.833 0.00 0.00 0.00 2.87
5110 5508 4.168101 GGGGAGAGATCTAGAGAGAGAGA 58.832 52.174 0.00 0.00 34.35 3.10
5114 5512 5.087323 GAGAGATCTAGAGAGAGAGAGGGA 58.913 50.000 0.00 0.00 34.35 4.20
5204 5604 5.057819 TCCACGTGCAAGTCACTAAATAAA 58.942 37.500 10.91 0.00 43.46 1.40
5361 5761 2.611225 AGAGGTCGATGGCTCAATTC 57.389 50.000 0.00 0.00 0.00 2.17
5424 5824 2.535012 TGGTTGAATCTGTACACGCA 57.465 45.000 0.00 0.00 0.00 5.24
5429 5829 1.193650 TGAATCTGTACACGCAAACGC 59.806 47.619 0.00 0.00 45.53 4.84
5508 5913 5.703978 TTTGCATCGATTTTCTTTGGAGA 57.296 34.783 0.00 0.00 0.00 3.71
5528 5934 5.753438 GGAGAAAAATGTCTTGGGTGAAAAC 59.247 40.000 0.00 0.00 0.00 2.43
5555 5961 5.368256 AAGCTGTCTATTTGAGCAAACAG 57.632 39.130 7.91 7.91 35.03 3.16
5578 5984 4.032900 GCGTCACAGTTATACCTTGACATG 59.967 45.833 10.72 0.00 37.09 3.21
5582 5993 7.321153 GTCACAGTTATACCTTGACATGTACT 58.679 38.462 0.00 0.00 37.20 2.73
5584 5995 9.027202 TCACAGTTATACCTTGACATGTACTAA 57.973 33.333 0.00 0.00 0.00 2.24
5585 5996 9.647797 CACAGTTATACCTTGACATGTACTAAA 57.352 33.333 0.00 0.00 0.00 1.85
5590 6001 3.749609 ACCTTGACATGTACTAAAACGGC 59.250 43.478 0.00 0.00 0.00 5.68
5621 6032 5.393243 GCCGCGATAGAATAAGTTCCTCTAT 60.393 44.000 8.23 6.42 35.55 1.98
5637 6048 4.033709 CCTCTATCCTCCTTCCAGTTTCA 58.966 47.826 0.00 0.00 0.00 2.69
5645 6056 3.349022 TCCTTCCAGTTTCAACGTGTTT 58.651 40.909 0.00 0.00 0.00 2.83
5649 6060 3.271729 TCCAGTTTCAACGTGTTTGCTA 58.728 40.909 0.00 0.00 34.88 3.49
5656 6067 1.062880 CAACGTGTTTGCTACAACGGT 59.937 47.619 0.00 0.00 38.80 4.83
5701 6119 3.495629 GGATCAGCCATCTCTATTGTGCA 60.496 47.826 0.00 0.00 36.34 4.57
5703 6121 3.273434 TCAGCCATCTCTATTGTGCAAC 58.727 45.455 0.00 0.00 37.35 4.17
5705 6123 1.268234 GCCATCTCTATTGTGCAACGC 60.268 52.381 0.00 0.00 42.39 4.84
5709 6127 1.067846 TCTCTATTGTGCAACGCGTCT 60.068 47.619 14.44 0.00 42.39 4.18
5743 6161 2.252556 CCAACGCTTGGCATGTACA 58.747 52.632 0.00 0.00 45.17 2.90
5813 6232 1.416030 GGTTTCACAGGGTTTGCCATT 59.584 47.619 0.00 0.00 36.17 3.16
5819 6238 1.152830 AGGGTTTGCCATTGGTCGT 59.847 52.632 4.26 0.00 36.17 4.34
5830 6249 2.168521 CCATTGGTCGTCAGAGGTATGT 59.831 50.000 0.00 0.00 0.00 2.29
5835 6254 2.431057 GGTCGTCAGAGGTATGTTGGAT 59.569 50.000 0.00 0.00 0.00 3.41
5866 8620 4.755266 ACACTAACTGTCTTGTTGAGGT 57.245 40.909 0.00 0.00 0.00 3.85
5902 8659 0.106268 TGGTGTGCAAGATGGTTGGT 60.106 50.000 0.00 0.00 0.00 3.67
5975 8732 1.608025 GCACCAACGGTCTCATTGAGA 60.608 52.381 12.38 12.38 36.22 3.27
5979 8736 3.007940 ACCAACGGTCTCATTGAGAATGA 59.992 43.478 17.73 0.00 45.19 2.57
5988 8746 6.183360 GGTCTCATTGAGAATGAACCTTCATG 60.183 42.308 17.73 0.00 46.60 3.07
6019 8777 3.814842 TGTGCAAGATGGTTGACTTAGTG 59.185 43.478 0.00 0.00 0.00 2.74
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.267961 CCGCCTAGTTCCACCACC 59.732 66.667 0.00 0.00 0.00 4.61
1 2 1.375523 CACCGCCTAGTTCCACCAC 60.376 63.158 0.00 0.00 0.00 4.16
2 3 2.589157 CCACCGCCTAGTTCCACCA 61.589 63.158 0.00 0.00 0.00 4.17
3 4 2.267961 CCACCGCCTAGTTCCACC 59.732 66.667 0.00 0.00 0.00 4.61
4 5 2.267961 CCCACCGCCTAGTTCCAC 59.732 66.667 0.00 0.00 0.00 4.02
5 6 3.712907 GCCCACCGCCTAGTTCCA 61.713 66.667 0.00 0.00 0.00 3.53
6 7 4.832608 CGCCCACCGCCTAGTTCC 62.833 72.222 0.00 0.00 0.00 3.62
7 8 3.718210 CTCGCCCACCGCCTAGTTC 62.718 68.421 0.00 0.00 36.73 3.01
8 9 3.771160 CTCGCCCACCGCCTAGTT 61.771 66.667 0.00 0.00 36.73 2.24
43 44 4.096003 CACCTACAGCCCCACCCG 62.096 72.222 0.00 0.00 0.00 5.28
44 45 3.728373 CCACCTACAGCCCCACCC 61.728 72.222 0.00 0.00 0.00 4.61
45 46 2.609610 TCCACCTACAGCCCCACC 60.610 66.667 0.00 0.00 0.00 4.61
46 47 2.990479 CTCCACCTACAGCCCCAC 59.010 66.667 0.00 0.00 0.00 4.61
47 48 3.009115 GCTCCACCTACAGCCCCA 61.009 66.667 0.00 0.00 0.00 4.96
48 49 2.543067 CTTGCTCCACCTACAGCCCC 62.543 65.000 0.00 0.00 34.47 5.80
49 50 1.078143 CTTGCTCCACCTACAGCCC 60.078 63.158 0.00 0.00 34.47 5.19
50 51 1.078143 CCTTGCTCCACCTACAGCC 60.078 63.158 0.00 0.00 34.47 4.85
51 52 1.746991 GCCTTGCTCCACCTACAGC 60.747 63.158 0.00 0.00 36.08 4.40
52 53 0.254178 ATGCCTTGCTCCACCTACAG 59.746 55.000 0.00 0.00 0.00 2.74
53 54 0.253044 GATGCCTTGCTCCACCTACA 59.747 55.000 0.00 0.00 0.00 2.74
54 55 0.811616 CGATGCCTTGCTCCACCTAC 60.812 60.000 0.00 0.00 0.00 3.18
55 56 1.522092 CGATGCCTTGCTCCACCTA 59.478 57.895 0.00 0.00 0.00 3.08
56 57 2.270205 CGATGCCTTGCTCCACCT 59.730 61.111 0.00 0.00 0.00 4.00
57 58 2.825836 CCGATGCCTTGCTCCACC 60.826 66.667 0.00 0.00 0.00 4.61
58 59 2.825836 CCCGATGCCTTGCTCCAC 60.826 66.667 0.00 0.00 0.00 4.02
59 60 4.113815 CCCCGATGCCTTGCTCCA 62.114 66.667 0.00 0.00 0.00 3.86
60 61 3.125376 ATCCCCGATGCCTTGCTCC 62.125 63.158 0.00 0.00 0.00 4.70
61 62 1.895707 CATCCCCGATGCCTTGCTC 60.896 63.158 0.00 0.00 33.17 4.26
62 63 2.194056 CATCCCCGATGCCTTGCT 59.806 61.111 0.00 0.00 33.17 3.91
88 89 3.769875 GATTCGTCCCGACCTCCGC 62.770 68.421 0.00 0.00 34.89 5.54
89 90 2.412112 GATTCGTCCCGACCTCCG 59.588 66.667 0.00 0.00 34.89 4.63
90 91 2.017559 CTGGATTCGTCCCGACCTCC 62.018 65.000 7.24 7.24 38.00 4.30
91 92 1.437986 CTGGATTCGTCCCGACCTC 59.562 63.158 0.00 0.00 34.89 3.85
92 93 2.722201 GCTGGATTCGTCCCGACCT 61.722 63.158 0.00 0.00 34.89 3.85
93 94 2.202892 GCTGGATTCGTCCCGACC 60.203 66.667 0.00 0.00 34.89 4.79
94 95 1.227002 GAGCTGGATTCGTCCCGAC 60.227 63.158 0.00 0.00 34.89 4.79
95 96 2.423898 GGAGCTGGATTCGTCCCGA 61.424 63.158 0.00 0.00 0.00 5.14
96 97 2.107141 GGAGCTGGATTCGTCCCG 59.893 66.667 0.00 0.00 0.00 5.14
97 98 2.107141 CGGAGCTGGATTCGTCCC 59.893 66.667 0.00 0.00 0.00 4.46
98 99 2.107141 CCGGAGCTGGATTCGTCC 59.893 66.667 0.00 0.00 0.00 4.79
99 100 2.107141 CCCGGAGCTGGATTCGTC 59.893 66.667 0.73 0.00 0.00 4.20
100 101 4.162690 GCCCGGAGCTGGATTCGT 62.163 66.667 0.73 0.00 38.99 3.85
102 103 4.918201 CCGCCCGGAGCTGGATTC 62.918 72.222 0.73 0.00 40.39 2.52
136 137 1.341369 GCAAATCGGGCGTTTTTCCG 61.341 55.000 0.00 0.00 46.89 4.30
137 138 0.319125 TGCAAATCGGGCGTTTTTCC 60.319 50.000 0.00 0.00 0.00 3.13
138 139 1.059942 CTGCAAATCGGGCGTTTTTC 58.940 50.000 0.00 0.00 0.00 2.29
139 140 0.943835 GCTGCAAATCGGGCGTTTTT 60.944 50.000 0.00 0.00 0.00 1.94
140 141 1.372872 GCTGCAAATCGGGCGTTTT 60.373 52.632 0.00 0.00 0.00 2.43
141 142 2.258286 GCTGCAAATCGGGCGTTT 59.742 55.556 0.00 0.00 0.00 3.60
142 143 4.101790 CGCTGCAAATCGGGCGTT 62.102 61.111 7.52 0.00 42.23 4.84
146 147 4.817063 CGCACGCTGCAAATCGGG 62.817 66.667 0.00 4.45 45.36 5.14
147 148 4.817063 CCGCACGCTGCAAATCGG 62.817 66.667 0.00 2.85 45.36 4.18
165 166 4.659172 TTCAACAGCTGGCCCCCG 62.659 66.667 19.93 0.00 0.00 5.73
166 167 2.203625 TTTCAACAGCTGGCCCCC 60.204 61.111 19.93 0.00 0.00 5.40
167 168 2.919494 CGTTTCAACAGCTGGCCCC 61.919 63.158 19.93 0.00 0.00 5.80
168 169 2.644992 CGTTTCAACAGCTGGCCC 59.355 61.111 19.93 0.00 0.00 5.80
169 170 2.050077 GCGTTTCAACAGCTGGCC 60.050 61.111 19.93 0.00 0.00 5.36
170 171 2.427410 CGCGTTTCAACAGCTGGC 60.427 61.111 19.93 8.74 0.00 4.85
171 172 2.252260 CCGCGTTTCAACAGCTGG 59.748 61.111 19.93 0.36 0.00 4.85
172 173 2.427410 GCCGCGTTTCAACAGCTG 60.427 61.111 13.48 13.48 0.00 4.24
173 174 4.012895 CGCCGCGTTTCAACAGCT 62.013 61.111 4.92 0.00 0.00 4.24
175 176 2.887889 TTCCGCCGCGTTTCAACAG 61.888 57.895 12.58 0.00 0.00 3.16
176 177 2.895865 TTCCGCCGCGTTTCAACA 60.896 55.556 12.58 0.00 0.00 3.33
177 178 2.426261 GTTCCGCCGCGTTTCAAC 60.426 61.111 12.58 5.33 0.00 3.18
178 179 2.589442 AGTTCCGCCGCGTTTCAA 60.589 55.556 12.58 0.00 0.00 2.69
179 180 3.342627 CAGTTCCGCCGCGTTTCA 61.343 61.111 12.58 0.00 0.00 2.69
180 181 4.084888 CCAGTTCCGCCGCGTTTC 62.085 66.667 12.58 1.26 0.00 2.78
204 205 4.741239 TCTCCCCCTCCAGCACCC 62.741 72.222 0.00 0.00 0.00 4.61
205 206 1.988982 GATTCTCCCCCTCCAGCACC 61.989 65.000 0.00 0.00 0.00 5.01
206 207 0.985490 AGATTCTCCCCCTCCAGCAC 60.985 60.000 0.00 0.00 0.00 4.40
207 208 0.984961 CAGATTCTCCCCCTCCAGCA 60.985 60.000 0.00 0.00 0.00 4.41
208 209 1.704007 CCAGATTCTCCCCCTCCAGC 61.704 65.000 0.00 0.00 0.00 4.85
209 210 1.704007 GCCAGATTCTCCCCCTCCAG 61.704 65.000 0.00 0.00 0.00 3.86
210 211 1.694169 GCCAGATTCTCCCCCTCCA 60.694 63.158 0.00 0.00 0.00 3.86
211 212 2.812619 CGCCAGATTCTCCCCCTCC 61.813 68.421 0.00 0.00 0.00 4.30
212 213 2.825264 CGCCAGATTCTCCCCCTC 59.175 66.667 0.00 0.00 0.00 4.30
213 214 3.483869 GCGCCAGATTCTCCCCCT 61.484 66.667 0.00 0.00 0.00 4.79
214 215 4.918201 CGCGCCAGATTCTCCCCC 62.918 72.222 0.00 0.00 0.00 5.40
215 216 4.918201 CCGCGCCAGATTCTCCCC 62.918 72.222 0.00 0.00 0.00 4.81
216 217 4.918201 CCCGCGCCAGATTCTCCC 62.918 72.222 0.00 0.00 0.00 4.30
217 218 4.918201 CCCCGCGCCAGATTCTCC 62.918 72.222 0.00 0.00 0.00 3.71
218 219 4.162690 ACCCCGCGCCAGATTCTC 62.163 66.667 0.00 0.00 0.00 2.87
219 220 4.473520 CACCCCGCGCCAGATTCT 62.474 66.667 0.00 0.00 0.00 2.40
248 249 4.954970 ACTGCCACCGCCCACTTG 62.955 66.667 0.00 0.00 0.00 3.16
249 250 4.954970 CACTGCCACCGCCCACTT 62.955 66.667 0.00 0.00 0.00 3.16
271 272 1.342672 TATTCTTCCTCCCACCGCCC 61.343 60.000 0.00 0.00 0.00 6.13
272 273 0.765510 ATATTCTTCCTCCCACCGCC 59.234 55.000 0.00 0.00 0.00 6.13
273 274 1.543429 CCATATTCTTCCTCCCACCGC 60.543 57.143 0.00 0.00 0.00 5.68
274 275 1.072331 CCCATATTCTTCCTCCCACCG 59.928 57.143 0.00 0.00 0.00 4.94
275 276 1.425448 CCCCATATTCTTCCTCCCACC 59.575 57.143 0.00 0.00 0.00 4.61
276 277 2.136026 ACCCCATATTCTTCCTCCCAC 58.864 52.381 0.00 0.00 0.00 4.61
277 278 2.605825 ACCCCATATTCTTCCTCCCA 57.394 50.000 0.00 0.00 0.00 4.37
278 279 3.330998 CCTAACCCCATATTCTTCCTCCC 59.669 52.174 0.00 0.00 0.00 4.30
279 280 3.330998 CCCTAACCCCATATTCTTCCTCC 59.669 52.174 0.00 0.00 0.00 4.30
280 281 3.330998 CCCCTAACCCCATATTCTTCCTC 59.669 52.174 0.00 0.00 0.00 3.71
281 282 3.049778 TCCCCTAACCCCATATTCTTCCT 60.050 47.826 0.00 0.00 0.00 3.36
282 283 3.332968 TCCCCTAACCCCATATTCTTCC 58.667 50.000 0.00 0.00 0.00 3.46
283 284 4.202577 CCTTCCCCTAACCCCATATTCTTC 60.203 50.000 0.00 0.00 0.00 2.87
284 285 3.727391 CCTTCCCCTAACCCCATATTCTT 59.273 47.826 0.00 0.00 0.00 2.52
285 286 3.049778 TCCTTCCCCTAACCCCATATTCT 60.050 47.826 0.00 0.00 0.00 2.40
286 287 3.332968 TCCTTCCCCTAACCCCATATTC 58.667 50.000 0.00 0.00 0.00 1.75
287 288 3.465363 TCCTTCCCCTAACCCCATATT 57.535 47.619 0.00 0.00 0.00 1.28
288 289 3.465363 TTCCTTCCCCTAACCCCATAT 57.535 47.619 0.00 0.00 0.00 1.78
289 290 2.995765 TTCCTTCCCCTAACCCCATA 57.004 50.000 0.00 0.00 0.00 2.74
290 291 1.930204 CTTTCCTTCCCCTAACCCCAT 59.070 52.381 0.00 0.00 0.00 4.00
291 292 1.378732 CTTTCCTTCCCCTAACCCCA 58.621 55.000 0.00 0.00 0.00 4.96
292 293 0.629596 CCTTTCCTTCCCCTAACCCC 59.370 60.000 0.00 0.00 0.00 4.95
293 294 0.629596 CCCTTTCCTTCCCCTAACCC 59.370 60.000 0.00 0.00 0.00 4.11
294 295 1.677490 TCCCTTTCCTTCCCCTAACC 58.323 55.000 0.00 0.00 0.00 2.85
295 296 2.377531 TGTTCCCTTTCCTTCCCCTAAC 59.622 50.000 0.00 0.00 0.00 2.34
296 297 2.647802 CTGTTCCCTTTCCTTCCCCTAA 59.352 50.000 0.00 0.00 0.00 2.69
297 298 2.275466 CTGTTCCCTTTCCTTCCCCTA 58.725 52.381 0.00 0.00 0.00 3.53
298 299 1.076438 CTGTTCCCTTTCCTTCCCCT 58.924 55.000 0.00 0.00 0.00 4.79
299 300 0.612174 GCTGTTCCCTTTCCTTCCCC 60.612 60.000 0.00 0.00 0.00 4.81
300 301 0.960861 CGCTGTTCCCTTTCCTTCCC 60.961 60.000 0.00 0.00 0.00 3.97
301 302 0.960861 CCGCTGTTCCCTTTCCTTCC 60.961 60.000 0.00 0.00 0.00 3.46
302 303 0.250770 ACCGCTGTTCCCTTTCCTTC 60.251 55.000 0.00 0.00 0.00 3.46
303 304 0.185175 AACCGCTGTTCCCTTTCCTT 59.815 50.000 0.00 0.00 0.00 3.36
304 305 0.537371 CAACCGCTGTTCCCTTTCCT 60.537 55.000 0.00 0.00 30.42 3.36
305 306 1.524008 CCAACCGCTGTTCCCTTTCC 61.524 60.000 0.00 0.00 30.42 3.13
306 307 1.956802 CCAACCGCTGTTCCCTTTC 59.043 57.895 0.00 0.00 30.42 2.62
307 308 2.200337 GCCAACCGCTGTTCCCTTT 61.200 57.895 0.00 0.00 30.42 3.11
308 309 2.597510 GCCAACCGCTGTTCCCTT 60.598 61.111 0.00 0.00 30.42 3.95
755 756 1.796459 CTGCTGCCATTTGCTTGTTTC 59.204 47.619 0.00 0.00 42.00 2.78
756 757 1.139455 ACTGCTGCCATTTGCTTGTTT 59.861 42.857 0.00 0.00 42.00 2.83
757 758 0.754472 ACTGCTGCCATTTGCTTGTT 59.246 45.000 0.00 0.00 42.00 2.83
758 759 1.270550 GTACTGCTGCCATTTGCTTGT 59.729 47.619 0.00 0.00 42.00 3.16
767 768 0.391661 GCAAGCTAGTACTGCTGCCA 60.392 55.000 17.01 0.00 41.03 4.92
780 781 2.009774 GGATGTGTAACGATGCAAGCT 58.990 47.619 0.00 0.00 42.39 3.74
784 785 1.277842 ACCTGGATGTGTAACGATGCA 59.722 47.619 0.00 0.00 42.39 3.96
789 790 3.926616 AGAAAGACCTGGATGTGTAACG 58.073 45.455 0.00 0.00 42.39 3.18
795 803 4.059773 AGAGAGAGAAAGACCTGGATGT 57.940 45.455 0.00 0.00 0.00 3.06
800 808 6.987386 TCTTTGTAAGAGAGAGAAAGACCTG 58.013 40.000 0.00 0.00 32.85 4.00
856 889 0.905357 GAGACTGGCTAGCTGGGAAA 59.095 55.000 15.72 0.00 0.00 3.13
857 890 1.323271 CGAGACTGGCTAGCTGGGAA 61.323 60.000 15.72 0.00 0.00 3.97
858 891 1.754621 CGAGACTGGCTAGCTGGGA 60.755 63.158 15.72 0.00 0.00 4.37
859 892 1.733402 CTCGAGACTGGCTAGCTGGG 61.733 65.000 15.72 7.56 0.00 4.45
860 893 1.034838 ACTCGAGACTGGCTAGCTGG 61.035 60.000 21.68 10.10 0.00 4.85
861 894 0.380378 GACTCGAGACTGGCTAGCTG 59.620 60.000 21.68 10.51 0.00 4.24
862 895 1.092921 CGACTCGAGACTGGCTAGCT 61.093 60.000 21.68 0.00 0.00 3.32
863 896 1.353804 CGACTCGAGACTGGCTAGC 59.646 63.158 21.68 6.04 0.00 3.42
864 897 1.062880 GAACGACTCGAGACTGGCTAG 59.937 57.143 21.68 0.00 0.00 3.42
865 898 1.085091 GAACGACTCGAGACTGGCTA 58.915 55.000 21.68 0.00 0.00 3.93
866 899 0.889638 TGAACGACTCGAGACTGGCT 60.890 55.000 21.68 0.00 0.00 4.75
869 902 2.590276 CGAATTGAACGACTCGAGACTG 59.410 50.000 21.68 11.83 33.13 3.51
875 908 1.582502 GCTACCGAATTGAACGACTCG 59.417 52.381 0.00 0.00 0.00 4.18
881 914 1.737793 CTGTGGGCTACCGAATTGAAC 59.262 52.381 0.00 0.00 40.75 3.18
896 929 1.748500 TGTGTGTGTGTGGCTGTGG 60.749 57.895 0.00 0.00 0.00 4.17
919 960 7.652507 TGTGACGAGTGAGACTACTGTATATAG 59.347 40.741 0.00 0.00 0.00 1.31
989 1030 1.065126 GGAGGATTTGGTGAGGGTGAG 60.065 57.143 0.00 0.00 0.00 3.51
990 1031 0.991920 GGAGGATTTGGTGAGGGTGA 59.008 55.000 0.00 0.00 0.00 4.02
991 1032 0.995024 AGGAGGATTTGGTGAGGGTG 59.005 55.000 0.00 0.00 0.00 4.61
992 1033 1.203492 AGAGGAGGATTTGGTGAGGGT 60.203 52.381 0.00 0.00 0.00 4.34
995 1036 3.037549 AGCTAGAGGAGGATTTGGTGAG 58.962 50.000 0.00 0.00 0.00 3.51
996 1037 3.121929 AGCTAGAGGAGGATTTGGTGA 57.878 47.619 0.00 0.00 0.00 4.02
998 1039 2.969262 GCTAGCTAGAGGAGGATTTGGT 59.031 50.000 25.15 0.00 0.00 3.67
999 1040 2.968574 TGCTAGCTAGAGGAGGATTTGG 59.031 50.000 25.15 0.00 0.00 3.28
1000 1041 4.679373 TTGCTAGCTAGAGGAGGATTTG 57.321 45.455 25.15 0.00 0.00 2.32
1001 1042 4.444164 GCTTTGCTAGCTAGAGGAGGATTT 60.444 45.833 25.15 0.00 46.77 2.17
1002 1043 3.070878 GCTTTGCTAGCTAGAGGAGGATT 59.929 47.826 25.15 0.00 46.77 3.01
1003 1044 2.632512 GCTTTGCTAGCTAGAGGAGGAT 59.367 50.000 25.15 0.00 46.77 3.24
1140 1216 1.646189 GGGTCGATGCAAGAAGAGAC 58.354 55.000 0.00 0.00 0.00 3.36
1141 1217 0.537188 GGGGTCGATGCAAGAAGAGA 59.463 55.000 0.00 0.00 0.00 3.10
1142 1218 0.462759 GGGGGTCGATGCAAGAAGAG 60.463 60.000 0.00 0.00 0.00 2.85
1143 1219 0.909610 AGGGGGTCGATGCAAGAAGA 60.910 55.000 0.00 0.00 0.00 2.87
1144 1220 0.462759 GAGGGGGTCGATGCAAGAAG 60.463 60.000 0.00 0.00 0.00 2.85
1145 1221 1.602237 GAGGGGGTCGATGCAAGAA 59.398 57.895 0.00 0.00 0.00 2.52
1146 1222 3.309582 GAGGGGGTCGATGCAAGA 58.690 61.111 0.00 0.00 0.00 3.02
1155 1231 0.179054 GTAATCTTGCCGAGGGGGTC 60.179 60.000 0.00 0.00 38.44 4.46
1157 1233 1.148498 GGTAATCTTGCCGAGGGGG 59.852 63.158 0.00 0.00 39.58 5.40
1160 1236 1.689273 AGCTAGGTAATCTTGCCGAGG 59.311 52.381 8.71 0.00 43.60 4.63
1164 1240 4.343814 AGAAGAGAGCTAGGTAATCTTGCC 59.656 45.833 20.68 11.11 43.60 4.52
1170 1246 7.297614 AGAGATGAAGAAGAGAGCTAGGTAAT 58.702 38.462 0.00 0.00 0.00 1.89
1181 1257 4.099881 AGCTGGCTAAGAGATGAAGAAGAG 59.900 45.833 0.00 0.00 0.00 2.85
1182 1258 4.029520 AGCTGGCTAAGAGATGAAGAAGA 58.970 43.478 0.00 0.00 0.00 2.87
1197 1286 1.555075 TCCAAGTAATCGAAGCTGGCT 59.445 47.619 0.00 0.00 0.00 4.75
1212 1318 0.612732 TGGGGATTGCTTGCTCCAAG 60.613 55.000 0.74 0.74 43.57 3.61
1341 1450 4.023234 ATGTTGGTGGCGCCGGTA 62.023 61.111 23.90 7.14 41.21 4.02
1355 1467 0.250901 GTGGCTGAAGTGGTCCATGT 60.251 55.000 0.00 0.00 0.00 3.21
1692 1824 2.125512 GTCGTCCAGCGCATCCTT 60.126 61.111 11.47 0.00 41.07 3.36
1701 1833 4.700365 TGCAGCGTCGTCGTCCAG 62.700 66.667 3.66 0.00 39.49 3.86
1841 1982 8.522830 TGAATTAATTTGGGAGTAGCAAGAAAG 58.477 33.333 1.43 0.00 0.00 2.62
2018 2164 6.643388 AGGTGTGCTTTGAAAGAAAGAAAAT 58.357 32.000 9.48 0.00 0.00 1.82
2023 2173 4.907879 AGAGGTGTGCTTTGAAAGAAAG 57.092 40.909 9.48 0.00 0.00 2.62
2087 2241 5.680619 ACACTCTTGTTAACATCAGGAACA 58.319 37.500 9.56 0.00 28.43 3.18
2111 2265 4.825422 TGCCATGAACTTTGTTTTGACAA 58.175 34.783 0.00 0.00 0.00 3.18
2149 2310 5.104859 AGCTAGATGATAAGAGGGATGCATG 60.105 44.000 2.46 0.00 0.00 4.06
2234 2420 5.579904 CAGGATTTATCTGCTCATACGATGG 59.420 44.000 0.00 0.00 0.00 3.51
2275 2464 7.342581 ACTGTTCTTTCCTTTCTTCTTCTCTT 58.657 34.615 0.00 0.00 0.00 2.85
2282 2471 6.929606 TGCTACTACTGTTCTTTCCTTTCTTC 59.070 38.462 0.00 0.00 0.00 2.87
2300 2489 2.826128 ACTACTGTTGCTGCTGCTACTA 59.174 45.455 25.06 12.98 43.46 1.82
2302 2491 2.086054 ACTACTGTTGCTGCTGCTAC 57.914 50.000 20.07 20.07 43.39 3.58
2303 2492 2.826128 ACTACTACTGTTGCTGCTGCTA 59.174 45.455 17.00 6.36 40.48 3.49
2304 2493 1.620819 ACTACTACTGTTGCTGCTGCT 59.379 47.619 17.00 0.00 40.48 4.24
2305 2494 2.086054 ACTACTACTGTTGCTGCTGC 57.914 50.000 8.89 8.89 40.20 5.25
2306 2495 4.442375 AGTACTACTACTGTTGCTGCTG 57.558 45.455 0.00 0.00 31.46 4.41
2307 2496 4.096682 GCTAGTACTACTACTGTTGCTGCT 59.903 45.833 0.00 0.00 34.79 4.24
2308 2497 4.096682 AGCTAGTACTACTACTGTTGCTGC 59.903 45.833 7.89 0.00 35.70 5.25
2309 2498 5.821516 AGCTAGTACTACTACTGTTGCTG 57.178 43.478 7.89 0.00 35.70 4.41
2310 2499 5.528320 GCTAGCTAGTACTACTACTGTTGCT 59.472 44.000 21.62 12.08 38.16 3.91
2311 2500 5.528320 AGCTAGCTAGTACTACTACTGTTGC 59.472 44.000 17.69 2.68 34.79 4.17
2312 2501 7.095523 GCTAGCTAGCTAGTACTACTACTGTTG 60.096 44.444 39.05 18.74 45.67 3.33
2313 2502 6.930722 GCTAGCTAGCTAGTACTACTACTGTT 59.069 42.308 39.05 9.56 45.67 3.16
2314 2503 6.458210 GCTAGCTAGCTAGTACTACTACTGT 58.542 44.000 39.05 9.91 45.67 3.55
2315 2504 6.956299 GCTAGCTAGCTAGTACTACTACTG 57.044 45.833 39.05 19.81 45.67 2.74
2367 2567 4.136796 CCACTCCACACAAAATTCAGAGA 58.863 43.478 0.00 0.00 0.00 3.10
2513 2724 8.773645 TCAGTCACAAAAATCAGTTACTACATG 58.226 33.333 0.00 0.00 0.00 3.21
2572 2807 5.184479 AGCTTGCATTGATTTCTTTCAGCTA 59.816 36.000 0.00 0.00 0.00 3.32
2600 2835 5.711506 TCTTGCTGCATCCATTTAGAAAAGA 59.288 36.000 1.84 0.00 0.00 2.52
2606 2841 3.488721 GCTGTCTTGCTGCATCCATTTAG 60.489 47.826 1.84 0.00 41.05 1.85
2610 2860 0.323087 TGCTGTCTTGCTGCATCCAT 60.323 50.000 1.84 0.00 45.14 3.41
2611 2861 1.073548 TGCTGTCTTGCTGCATCCA 59.926 52.632 1.84 0.00 45.14 3.41
2612 2862 3.991999 TGCTGTCTTGCTGCATCC 58.008 55.556 1.84 0.00 45.14 3.51
2616 2866 1.229428 TGTACTTGCTGTCTTGCTGC 58.771 50.000 0.00 0.00 41.65 5.25
2617 2867 3.251729 ACAATGTACTTGCTGTCTTGCTG 59.748 43.478 0.00 0.00 38.50 4.41
2618 2868 3.251729 CACAATGTACTTGCTGTCTTGCT 59.748 43.478 0.00 0.00 38.50 3.91
2619 2869 3.558505 CACAATGTACTTGCTGTCTTGC 58.441 45.455 0.00 0.00 38.50 4.01
2622 2872 3.769739 TCCACAATGTACTTGCTGTCT 57.230 42.857 0.00 0.00 38.50 3.41
2713 2975 5.819379 ACAGACATGCATTTACCATCACTAG 59.181 40.000 0.00 0.00 0.00 2.57
2750 3017 5.006649 GCAATGATTTGTGATACGAGTAGCA 59.993 40.000 0.00 0.00 35.17 3.49
2751 3018 5.235186 AGCAATGATTTGTGATACGAGTAGC 59.765 40.000 0.00 0.00 35.17 3.58
2757 3024 6.775088 ACAGTTAGCAATGATTTGTGATACG 58.225 36.000 0.00 0.00 35.17 3.06
2844 3112 7.559590 AGCTCTTAATGCGACTAATGATTTT 57.440 32.000 0.00 0.00 35.28 1.82
2853 3121 5.866633 GCATCTATTAGCTCTTAATGCGACT 59.133 40.000 0.00 0.00 33.96 4.18
2869 3137 5.922544 GCAACAAAAGACTTGTGCATCTATT 59.077 36.000 5.21 0.00 32.22 1.73
2991 3262 8.857098 TGCTCAGGTTCTACGAACTATATAAAT 58.143 33.333 6.68 0.00 0.00 1.40
2992 3263 8.133627 GTGCTCAGGTTCTACGAACTATATAAA 58.866 37.037 6.68 0.00 0.00 1.40
3000 3271 1.272769 AGGTGCTCAGGTTCTACGAAC 59.727 52.381 0.00 0.00 0.00 3.95
3003 3274 2.427453 ACATAGGTGCTCAGGTTCTACG 59.573 50.000 0.00 0.00 0.00 3.51
3011 3282 0.249489 GCCCGTACATAGGTGCTCAG 60.249 60.000 0.00 0.00 0.00 3.35
3012 3283 0.973496 TGCCCGTACATAGGTGCTCA 60.973 55.000 0.00 0.00 0.00 4.26
3035 3306 7.428020 ACTCGAATAAATACAACTACGGCATA 58.572 34.615 0.00 0.00 0.00 3.14
3062 3333 5.098211 TCAGCGCTCATAATCGATATCAAG 58.902 41.667 7.13 0.00 0.00 3.02
3190 3461 1.795162 GCGCTGGTTCCATTTTGATCG 60.795 52.381 0.00 0.00 0.00 3.69
3459 3738 8.811017 TGTATATTTTCCATCATTTTGGTGTGT 58.189 29.630 0.00 0.00 38.01 3.72
3460 3739 9.820725 ATGTATATTTTCCATCATTTTGGTGTG 57.179 29.630 0.00 0.00 38.01 3.82
3537 3816 9.029368 TGACTTCTACTACAGTACTGTCTACTA 57.971 37.037 31.11 13.19 43.74 1.82
3639 3930 4.159135 AGCCTTTCTTGCCATTAACATGAG 59.841 41.667 0.00 0.00 31.07 2.90
3684 3975 1.704641 AGCCACTGTGTCTCTGTGTA 58.295 50.000 7.08 0.00 42.05 2.90
3703 3994 5.087323 GGGAGAGAGAGAGAGAGAGAGATA 58.913 50.000 0.00 0.00 0.00 1.98
3704 3995 3.906846 GGGAGAGAGAGAGAGAGAGAGAT 59.093 52.174 0.00 0.00 0.00 2.75
3705 3996 3.051803 AGGGAGAGAGAGAGAGAGAGAGA 60.052 52.174 0.00 0.00 0.00 3.10
3706 3997 3.312890 AGGGAGAGAGAGAGAGAGAGAG 58.687 54.545 0.00 0.00 0.00 3.20
3707 3998 3.051803 AGAGGGAGAGAGAGAGAGAGAGA 60.052 52.174 0.00 0.00 0.00 3.10
3708 3999 3.312890 AGAGGGAGAGAGAGAGAGAGAG 58.687 54.545 0.00 0.00 0.00 3.20
3709 4000 3.051803 AGAGAGGGAGAGAGAGAGAGAGA 60.052 52.174 0.00 0.00 0.00 3.10
3710 4001 3.312890 AGAGAGGGAGAGAGAGAGAGAG 58.687 54.545 0.00 0.00 0.00 3.20
3711 4002 3.051803 AGAGAGAGGGAGAGAGAGAGAGA 60.052 52.174 0.00 0.00 0.00 3.10
3712 4003 3.312890 AGAGAGAGGGAGAGAGAGAGAG 58.687 54.545 0.00 0.00 0.00 3.20
3713 4004 3.051803 AGAGAGAGAGGGAGAGAGAGAGA 60.052 52.174 0.00 0.00 0.00 3.10
3714 4005 3.312890 AGAGAGAGAGGGAGAGAGAGAG 58.687 54.545 0.00 0.00 0.00 3.20
3715 4006 3.051803 AGAGAGAGAGAGGGAGAGAGAGA 60.052 52.174 0.00 0.00 0.00 3.10
3716 4007 3.312890 AGAGAGAGAGAGGGAGAGAGAG 58.687 54.545 0.00 0.00 0.00 3.20
3717 4008 3.051803 AGAGAGAGAGAGAGGGAGAGAGA 60.052 52.174 0.00 0.00 0.00 3.10
3718 4009 3.312890 AGAGAGAGAGAGAGGGAGAGAG 58.687 54.545 0.00 0.00 0.00 3.20
3725 4016 4.222336 AGAGAGAGAGAGAGAGAGAGAGG 58.778 52.174 0.00 0.00 0.00 3.69
3766 4129 3.216800 CATGTGGAGAGAGAGGAGAGAG 58.783 54.545 0.00 0.00 0.00 3.20
3767 4130 2.686416 GCATGTGGAGAGAGAGGAGAGA 60.686 54.545 0.00 0.00 0.00 3.10
3768 4131 1.682854 GCATGTGGAGAGAGAGGAGAG 59.317 57.143 0.00 0.00 0.00 3.20
3769 4132 1.006400 TGCATGTGGAGAGAGAGGAGA 59.994 52.381 0.00 0.00 0.00 3.71
3770 4133 1.482954 TGCATGTGGAGAGAGAGGAG 58.517 55.000 0.00 0.00 0.00 3.69
3771 4134 1.942776 TTGCATGTGGAGAGAGAGGA 58.057 50.000 0.00 0.00 0.00 3.71
3772 4135 2.775911 TTTGCATGTGGAGAGAGAGG 57.224 50.000 0.00 0.00 0.00 3.69
3988 4351 4.173924 GCCTGCCTGCTCTCCCTC 62.174 72.222 0.00 0.00 0.00 4.30
4119 4491 7.086685 TGGACCCTCTTTTTACTTTGTCTAT 57.913 36.000 0.00 0.00 0.00 1.98
4120 4492 6.503560 TGGACCCTCTTTTTACTTTGTCTA 57.496 37.500 0.00 0.00 0.00 2.59
4121 4493 5.382664 TGGACCCTCTTTTTACTTTGTCT 57.617 39.130 0.00 0.00 0.00 3.41
4122 4494 6.127563 TGTTTGGACCCTCTTTTTACTTTGTC 60.128 38.462 0.00 0.00 0.00 3.18
4123 4495 5.717654 TGTTTGGACCCTCTTTTTACTTTGT 59.282 36.000 0.00 0.00 0.00 2.83
4124 4496 6.215495 TGTTTGGACCCTCTTTTTACTTTG 57.785 37.500 0.00 0.00 0.00 2.77
4156 4539 0.969149 CTCCAAAGAAGCCCCAAACC 59.031 55.000 0.00 0.00 0.00 3.27
4511 4901 4.706476 TCCTCTATTTTCAGTGCCATTTGG 59.294 41.667 0.00 0.00 38.53 3.28
4922 5316 0.764890 TCCCTCTTCCCAACACACAG 59.235 55.000 0.00 0.00 0.00 3.66
4929 5323 2.003830 TCTCTCTCTCCCTCTTCCCAA 58.996 52.381 0.00 0.00 0.00 4.12
4933 5327 1.850345 TCCCTCTCTCTCTCCCTCTTC 59.150 57.143 0.00 0.00 0.00 2.87
4934 5328 1.994399 TCCCTCTCTCTCTCCCTCTT 58.006 55.000 0.00 0.00 0.00 2.85
4939 5333 2.644798 AGCTAGATCCCTCTCTCTCTCC 59.355 54.545 0.00 0.00 32.66 3.71
4982 5376 7.050377 CACTATCACTCTTCTCTCTCTCTCTT 58.950 42.308 0.00 0.00 0.00 2.85
5110 5508 0.625683 ATGGATGAACAGCCCTCCCT 60.626 55.000 6.64 0.00 35.64 4.20
5114 5512 3.463048 AAAAGATGGATGAACAGCCCT 57.537 42.857 6.64 0.00 35.64 5.19
5204 5604 4.314961 CCTTTTTCGCTTTTGGGCTTTAT 58.685 39.130 0.00 0.00 0.00 1.40
5361 5761 0.455633 GCACAAGAGATGCAAAGGCG 60.456 55.000 0.00 0.00 45.35 5.52
5424 5824 3.315749 TCTTGGGAAAAATACACGCGTTT 59.684 39.130 10.22 5.90 0.00 3.60
5439 5842 2.283834 TCCTGCCCTATTTTCTTGGGA 58.716 47.619 0.91 0.00 42.10 4.37
5440 5843 2.826674 TCCTGCCCTATTTTCTTGGG 57.173 50.000 0.00 0.00 42.39 4.12
5484 5889 6.151691 TCTCCAAAGAAAATCGATGCAAAAG 58.848 36.000 0.00 0.00 0.00 2.27
5528 5934 6.426980 TTGCTCAAATAGACAGCTTATGTG 57.573 37.500 0.00 0.00 44.17 3.21
5555 5961 3.581755 TGTCAAGGTATAACTGTGACGC 58.418 45.455 19.33 6.31 41.18 5.19
5563 5969 8.598075 CCGTTTTAGTACATGTCAAGGTATAAC 58.402 37.037 0.00 0.00 0.00 1.89
5578 5984 1.792632 GCAATGCCGCCGTTTTAGTAC 60.793 52.381 0.00 0.00 0.00 2.73
5582 5993 2.569134 GGCAATGCCGCCGTTTTA 59.431 55.556 9.14 0.00 43.52 1.52
5599 6010 6.094325 AGGATAGAGGAACTTATTCTATCGCG 59.906 42.308 0.00 0.00 45.45 5.87
5621 6032 1.766496 ACGTTGAAACTGGAAGGAGGA 59.234 47.619 0.00 0.00 39.30 3.71
5637 6048 1.371595 ACCGTTGTAGCAAACACGTT 58.628 45.000 0.00 0.00 38.00 3.99
5645 6056 0.464735 ACAAGCCAACCGTTGTAGCA 60.465 50.000 10.34 0.00 35.10 3.49
5649 6060 1.724582 GCTCACAAGCCAACCGTTGT 61.725 55.000 10.34 0.00 43.10 3.32
5656 6067 1.891919 GACCACGCTCACAAGCCAA 60.892 57.895 0.00 0.00 46.34 4.52
5668 6079 2.184322 CTGATCCACCGGACCACG 59.816 66.667 9.46 0.00 43.80 4.94
5690 6108 1.059692 CAGACGCGTTGCACAATAGAG 59.940 52.381 15.53 0.00 0.00 2.43
5701 6119 1.375551 AAACAAACTCCAGACGCGTT 58.624 45.000 15.53 0.00 0.00 4.84
5703 6121 2.478894 ACATAAACAAACTCCAGACGCG 59.521 45.455 3.53 3.53 0.00 6.01
5705 6123 4.062293 TGGACATAAACAAACTCCAGACG 58.938 43.478 0.00 0.00 0.00 4.18
5709 6127 3.003897 GCGTTGGACATAAACAAACTCCA 59.996 43.478 0.00 0.00 0.00 3.86
5743 6161 0.468585 TAGTGTCACCACCACCGTCT 60.469 55.000 0.00 0.00 42.88 4.18
5813 6232 1.548719 CCAACATACCTCTGACGACCA 59.451 52.381 0.00 0.00 0.00 4.02
5819 6238 5.009631 CCAAAACATCCAACATACCTCTGA 58.990 41.667 0.00 0.00 0.00 3.27
5830 6249 4.404073 AGTTAGTGTTGCCAAAACATCCAA 59.596 37.500 0.00 0.00 32.23 3.53
5835 6254 4.013728 AGACAGTTAGTGTTGCCAAAACA 58.986 39.130 0.00 0.00 40.56 2.83
5851 8605 2.505819 AGGTCAACCTCAACAAGACAGT 59.494 45.455 0.00 0.00 44.77 3.55
5866 8620 2.361757 CACCAAGCAACATGAAGGTCAA 59.638 45.455 0.00 0.00 0.00 3.18
5975 8732 4.022589 CACAGAGCAACATGAAGGTTCATT 60.023 41.667 0.00 0.00 45.13 2.57
5979 8736 2.620115 CACACAGAGCAACATGAAGGTT 59.380 45.455 0.00 0.00 0.00 3.50
5988 8746 1.068748 CCATCTTGCACACAGAGCAAC 60.069 52.381 0.00 0.00 46.13 4.17
6019 8777 3.191581 TCTTGAAGAGTCTGGACGATGAC 59.808 47.826 0.00 0.00 36.20 3.06


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.