Multiple sequence alignment - TraesCS6D01G011200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G011200 chr6D 100.000 2612 0 0 1 2612 4290455 4293066 0.000000e+00 4824.0
1 TraesCS6D01G011200 chr6B 90.450 1843 134 17 806 2612 8411310 8409474 0.000000e+00 2390.0
2 TraesCS6D01G011200 chr6B 88.837 645 38 22 3 617 8412011 8411371 0.000000e+00 761.0
3 TraesCS6D01G011200 chr6A 87.803 1566 115 36 620 2141 2750573 2752106 0.000000e+00 1764.0
4 TraesCS6D01G011200 chr6A 90.032 622 41 13 1 617 2749587 2750192 0.000000e+00 785.0
5 TraesCS6D01G011200 chr6A 94.092 457 27 0 2151 2607 2752157 2752613 0.000000e+00 695.0
6 TraesCS6D01G011200 chr1B 85.195 385 47 2 1262 1636 683111336 683110952 1.130000e-103 387.0
7 TraesCS6D01G011200 chr1D 81.395 129 23 1 1283 1411 460602814 460602687 1.280000e-18 104.0
8 TraesCS6D01G011200 chr3B 81.250 112 14 5 114 223 749038555 749038661 1.670000e-12 84.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G011200 chr6D 4290455 4293066 2611 False 4824.000000 4824 100.000000 1 2612 1 chr6D.!!$F1 2611
1 TraesCS6D01G011200 chr6B 8409474 8412011 2537 True 1575.500000 2390 89.643500 3 2612 2 chr6B.!!$R1 2609
2 TraesCS6D01G011200 chr6A 2749587 2752613 3026 False 1081.333333 1764 90.642333 1 2607 3 chr6A.!!$F1 2606

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
705 1120 0.031994 GTGGGCAATGACACACAACC 59.968 55.0 5.44 0.0 37.54 3.77 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2476 3001 0.238817 GCGGAACATGCGGTTTGTTA 59.761 50.0 0.0 0.0 40.63 2.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
103 107 1.832167 GGACAACCTGCAGGCCAAA 60.832 57.895 33.06 0.00 39.32 3.28
115 119 3.574780 GCCAAAGTGTACGGCCTC 58.425 61.111 0.00 0.00 40.07 4.70
281 289 1.659335 GCCGCCAAATGATCATGCG 60.659 57.895 24.38 24.38 44.47 4.73
317 328 1.991264 CATGGATCAGATCATCGTCGC 59.009 52.381 12.66 0.00 0.00 5.19
338 355 2.611292 CCGTCTTCTTCTTGCATGGATC 59.389 50.000 0.00 0.00 0.00 3.36
339 356 3.264947 CGTCTTCTTCTTGCATGGATCA 58.735 45.455 0.00 0.00 0.00 2.92
340 357 3.063180 CGTCTTCTTCTTGCATGGATCAC 59.937 47.826 0.00 0.00 0.00 3.06
341 358 3.376546 GTCTTCTTCTTGCATGGATCACC 59.623 47.826 0.00 0.00 0.00 4.02
385 406 7.041576 ACCATCACTCATCGTTCATTATTGATG 60.042 37.037 0.00 0.00 39.59 3.07
450 474 7.861629 ACCCCATTTTCTTTTTCTTCTCTTTT 58.138 30.769 0.00 0.00 0.00 2.27
508 539 7.953158 ATTGTAGACCATGATTTACTGATCG 57.047 36.000 0.00 0.00 0.00 3.69
571 602 7.944061 TGAATTCACTCATCACATCTGTTTTT 58.056 30.769 3.38 0.00 0.00 1.94
636 1050 7.855375 TCTCATATTCTCATGTAATGGGGATC 58.145 38.462 0.00 0.00 39.44 3.36
689 1104 5.920273 GTGAAACCAGAATTAATGTGTGTGG 59.080 40.000 1.27 1.27 0.00 4.17
693 1108 3.257873 CCAGAATTAATGTGTGTGGGCAA 59.742 43.478 0.00 0.00 0.00 4.52
694 1109 4.081531 CCAGAATTAATGTGTGTGGGCAAT 60.082 41.667 0.00 0.00 0.00 3.56
695 1110 4.865925 CAGAATTAATGTGTGTGGGCAATG 59.134 41.667 0.00 0.00 0.00 2.82
696 1111 4.771577 AGAATTAATGTGTGTGGGCAATGA 59.228 37.500 0.00 0.00 0.00 2.57
697 1112 3.932545 TTAATGTGTGTGGGCAATGAC 57.067 42.857 0.00 0.00 0.00 3.06
698 1113 1.702182 AATGTGTGTGGGCAATGACA 58.298 45.000 0.00 0.00 0.00 3.58
699 1114 0.961019 ATGTGTGTGGGCAATGACAC 59.039 50.000 0.00 0.00 42.40 3.67
702 1117 4.995594 TGTGGGCAATGACACACA 57.004 50.000 8.29 8.29 42.20 3.72
703 1118 3.197664 TGTGGGCAATGACACACAA 57.802 47.368 9.61 0.00 42.20 3.33
704 1119 0.743688 TGTGGGCAATGACACACAAC 59.256 50.000 9.61 0.00 42.20 3.32
705 1120 0.031994 GTGGGCAATGACACACAACC 59.968 55.000 5.44 0.00 37.54 3.77
706 1121 0.396278 TGGGCAATGACACACAACCA 60.396 50.000 0.00 0.00 0.00 3.67
707 1122 0.314935 GGGCAATGACACACAACCAG 59.685 55.000 0.00 0.00 0.00 4.00
708 1123 0.314935 GGCAATGACACACAACCAGG 59.685 55.000 0.00 0.00 0.00 4.45
712 1127 3.366273 GCAATGACACACAACCAGGTATG 60.366 47.826 0.00 0.00 0.00 2.39
714 1129 1.141858 TGACACACAACCAGGTATGCA 59.858 47.619 0.00 0.00 0.00 3.96
715 1130 2.226330 GACACACAACCAGGTATGCAA 58.774 47.619 0.00 0.00 0.00 4.08
719 1134 3.255395 CACACAACCAGGTATGCAAATCA 59.745 43.478 0.00 0.00 0.00 2.57
722 1137 5.357878 ACACAACCAGGTATGCAAATCATAG 59.642 40.000 0.00 0.00 38.27 2.23
739 1154 7.486407 AATCATAGTTCTTTGCAGGGAAATT 57.514 32.000 8.49 2.12 0.00 1.82
741 1156 6.924111 TCATAGTTCTTTGCAGGGAAATTTC 58.076 36.000 9.83 9.83 0.00 2.17
793 1210 4.346127 TGACAGAAATCATCATCGATCCCT 59.654 41.667 0.00 0.00 0.00 4.20
794 1211 4.892433 ACAGAAATCATCATCGATCCCTC 58.108 43.478 0.00 0.00 0.00 4.30
797 1214 4.535294 AGAAATCATCATCGATCCCTCCAT 59.465 41.667 0.00 0.00 0.00 3.41
798 1215 4.923516 AATCATCATCGATCCCTCCATT 57.076 40.909 0.00 0.00 0.00 3.16
799 1216 3.690475 TCATCATCGATCCCTCCATTG 57.310 47.619 0.00 0.00 0.00 2.82
800 1217 2.303890 TCATCATCGATCCCTCCATTGG 59.696 50.000 0.00 0.00 0.00 3.16
801 1218 2.101640 TCATCGATCCCTCCATTGGA 57.898 50.000 5.05 5.05 36.05 3.53
802 1219 1.694150 TCATCGATCCCTCCATTGGAC 59.306 52.381 0.00 0.00 33.94 4.02
803 1220 0.681733 ATCGATCCCTCCATTGGACG 59.318 55.000 0.00 3.78 33.94 4.79
804 1221 0.686441 TCGATCCCTCCATTGGACGT 60.686 55.000 0.00 0.00 33.94 4.34
847 1265 5.064962 CCTGAGAATCTCTGAATTTGACAGC 59.935 44.000 17.14 0.00 35.61 4.40
913 1331 0.823356 GCCTCAAACCTGCAACTCCA 60.823 55.000 0.00 0.00 0.00 3.86
972 1424 5.683876 TTCCTCCTTCAACCTATCTCTTG 57.316 43.478 0.00 0.00 0.00 3.02
1077 1529 2.938428 ACATCTTCCTCCTCACCTCT 57.062 50.000 0.00 0.00 0.00 3.69
1081 1533 1.429299 TCTTCCTCCTCACCTCTGTCA 59.571 52.381 0.00 0.00 0.00 3.58
1090 1542 0.610687 CACCTCTGTCACCCTCTTCC 59.389 60.000 0.00 0.00 0.00 3.46
1092 1544 1.132689 ACCTCTGTCACCCTCTTCCTT 60.133 52.381 0.00 0.00 0.00 3.36
1098 1550 1.201429 TCACCCTCTTCCTTCTGCCC 61.201 60.000 0.00 0.00 0.00 5.36
1101 1553 1.500783 CCCTCTTCCTTCTGCCCCAA 61.501 60.000 0.00 0.00 0.00 4.12
1121 1573 3.458163 GGCGATGTCCTCCACCGA 61.458 66.667 0.00 0.00 0.00 4.69
1143 1595 0.987294 CCATCATCCGGCTCCCTTAT 59.013 55.000 0.00 0.00 0.00 1.73
1179 1631 1.326213 CCGAGACCTGCCAGAGATGT 61.326 60.000 0.00 0.00 0.00 3.06
1194 1646 0.798776 GATGTGGCGAGAACAACCAG 59.201 55.000 0.00 0.00 33.12 4.00
1200 1652 0.507358 GCGAGAACAACCAGAACGTC 59.493 55.000 0.00 0.00 0.00 4.34
1323 1775 3.785859 GCAGGCATGGACTCCGGA 61.786 66.667 2.93 2.93 0.00 5.14
1389 1841 2.747460 TGCCTCAACGCCTGCATC 60.747 61.111 0.00 0.00 0.00 3.91
1456 1908 1.525535 ATCGAGGACGGGAGGTACG 60.526 63.158 0.00 0.00 40.21 3.67
1465 1917 4.944372 GGAGGTACGCCGATGCCG 62.944 72.222 0.00 0.00 39.41 5.69
1643 2099 8.997323 AGATTATATTGAGCAAATGTCACTAGC 58.003 33.333 0.00 0.00 0.00 3.42
1667 2123 7.098503 CATATATTGCTCTATTCGGCATACG 57.901 40.000 0.00 0.00 46.11 3.06
1778 2253 3.117794 TGTTACAGTCGTGGAAACGAAG 58.882 45.455 2.07 1.93 44.12 3.79
1877 2353 4.144297 ACAACAAAGAATGCCAAGAGCTA 58.856 39.130 0.00 0.00 44.23 3.32
1881 2357 3.550437 AAGAATGCCAAGAGCTATCGT 57.450 42.857 0.00 0.00 44.23 3.73
1921 2397 2.723322 TCAGCCTTCAGGAATCATGG 57.277 50.000 0.00 0.00 37.39 3.66
1939 2415 2.978824 CGGACCGGTTCACCTCAT 59.021 61.111 14.76 0.00 0.00 2.90
1942 2418 0.899720 GGACCGGTTCACCTCATACA 59.100 55.000 9.42 0.00 0.00 2.29
1985 2462 0.711670 CGGTCCACAATCGTGTTACG 59.288 55.000 0.00 0.00 41.93 3.18
2070 2547 1.071605 GCCAGACGACACAATGAGAC 58.928 55.000 0.00 0.00 0.00 3.36
2071 2548 1.605457 GCCAGACGACACAATGAGACA 60.605 52.381 0.00 0.00 0.00 3.41
2079 2556 3.476552 GACACAATGAGACAGGGTTCAA 58.523 45.455 0.00 0.00 0.00 2.69
2101 2578 5.276461 ACATATACGACAGGATTCAAGCA 57.724 39.130 0.00 0.00 0.00 3.91
2107 2584 0.815734 ACAGGATTCAAGCATGCAGC 59.184 50.000 21.98 0.69 46.19 5.25
2123 2600 2.007360 CAGCAGCACTGGTTCTAGAG 57.993 55.000 0.00 0.00 43.19 2.43
2189 2708 8.281212 ACGAAAATTTCTGCAGGTAGATTTAT 57.719 30.769 15.13 6.63 0.00 1.40
2214 2733 5.690464 ATAAGGTTTCTCAGAGATGCACT 57.310 39.130 0.00 0.00 0.00 4.40
2243 2762 9.790344 CAACTTGAAAGGATATGAGGATTATCT 57.210 33.333 0.00 0.00 0.00 1.98
2334 2859 9.889128 CCCAAGAAAACAATTAATAATGGTCAT 57.111 29.630 0.00 0.00 0.00 3.06
2476 3001 6.212791 TCTTGAGTTTATGGTTGTAGTAGCCT 59.787 38.462 0.00 0.00 0.00 4.58
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
115 119 3.209812 ATGAGCTGCTGCATGGCG 61.210 61.111 18.42 0.00 42.74 5.69
317 328 2.099141 TCCATGCAAGAAGAAGACGG 57.901 50.000 0.00 0.00 0.00 4.79
338 355 4.273480 GGTGACGAGGAAATATTGATGGTG 59.727 45.833 0.00 0.00 0.00 4.17
339 356 4.080582 TGGTGACGAGGAAATATTGATGGT 60.081 41.667 0.00 0.00 0.00 3.55
340 357 4.450976 TGGTGACGAGGAAATATTGATGG 58.549 43.478 0.00 0.00 0.00 3.51
341 358 5.759763 TGATGGTGACGAGGAAATATTGATG 59.240 40.000 0.00 0.00 0.00 3.07
342 359 5.760253 GTGATGGTGACGAGGAAATATTGAT 59.240 40.000 0.00 0.00 0.00 2.57
344 361 5.118990 AGTGATGGTGACGAGGAAATATTG 58.881 41.667 0.00 0.00 0.00 1.90
345 362 5.104941 TGAGTGATGGTGACGAGGAAATATT 60.105 40.000 0.00 0.00 0.00 1.28
346 363 4.405680 TGAGTGATGGTGACGAGGAAATAT 59.594 41.667 0.00 0.00 0.00 1.28
347 364 3.767131 TGAGTGATGGTGACGAGGAAATA 59.233 43.478 0.00 0.00 0.00 1.40
399 420 9.387397 TCCCAACTACACCTGATTAATCATATA 57.613 33.333 18.26 7.92 36.02 0.86
400 421 8.157476 GTCCCAACTACACCTGATTAATCATAT 58.843 37.037 18.26 7.14 36.02 1.78
403 424 5.338871 GGTCCCAACTACACCTGATTAATCA 60.339 44.000 17.07 17.07 35.16 2.57
404 425 5.123936 GGTCCCAACTACACCTGATTAATC 58.876 45.833 8.60 8.60 0.00 1.75
405 426 4.079958 GGGTCCCAACTACACCTGATTAAT 60.080 45.833 1.78 0.00 0.00 1.40
406 427 3.264964 GGGTCCCAACTACACCTGATTAA 59.735 47.826 1.78 0.00 0.00 1.40
424 448 6.656632 AGAGAAGAAAAAGAAAATGGGGTC 57.343 37.500 0.00 0.00 0.00 4.46
456 480 5.151389 GCTTTTATGGACAATCGAAAACGT 58.849 37.500 0.00 0.00 0.00 3.99
457 481 4.259734 CGCTTTTATGGACAATCGAAAACG 59.740 41.667 0.00 0.00 0.00 3.60
458 482 5.387279 TCGCTTTTATGGACAATCGAAAAC 58.613 37.500 0.00 0.00 0.00 2.43
459 483 5.614923 TCGCTTTTATGGACAATCGAAAA 57.385 34.783 0.00 0.00 0.00 2.29
460 484 5.614923 TTCGCTTTTATGGACAATCGAAA 57.385 34.783 0.00 0.00 32.77 3.46
461 485 5.811399 ATTCGCTTTTATGGACAATCGAA 57.189 34.783 0.00 0.00 38.71 3.71
644 1059 8.634335 TTCACCAATCAAATCAGAAGTGATAA 57.366 30.769 0.00 0.00 43.04 1.75
647 1062 6.239008 GGTTTCACCAATCAAATCAGAAGTGA 60.239 38.462 0.00 0.00 38.42 3.41
648 1063 5.922544 GGTTTCACCAATCAAATCAGAAGTG 59.077 40.000 0.00 0.00 38.42 3.16
678 1093 2.556189 GTGTCATTGCCCACACACATTA 59.444 45.455 3.05 0.00 42.20 1.90
679 1094 1.340889 GTGTCATTGCCCACACACATT 59.659 47.619 3.05 0.00 42.20 2.71
680 1095 0.961019 GTGTCATTGCCCACACACAT 59.039 50.000 3.05 0.00 42.20 3.21
685 1100 0.743688 GTTGTGTGTCATTGCCCACA 59.256 50.000 5.27 5.27 39.16 4.17
687 1102 0.396278 TGGTTGTGTGTCATTGCCCA 60.396 50.000 0.00 0.00 0.00 5.36
689 1104 0.314935 CCTGGTTGTGTGTCATTGCC 59.685 55.000 0.00 0.00 0.00 4.52
693 1108 2.224744 TGCATACCTGGTTGTGTGTCAT 60.225 45.455 3.84 0.00 30.82 3.06
694 1109 1.141858 TGCATACCTGGTTGTGTGTCA 59.858 47.619 3.84 0.00 30.82 3.58
695 1110 1.890876 TGCATACCTGGTTGTGTGTC 58.109 50.000 3.84 0.00 30.82 3.67
696 1111 2.356665 TTGCATACCTGGTTGTGTGT 57.643 45.000 3.84 0.00 30.82 3.72
697 1112 3.255395 TGATTTGCATACCTGGTTGTGTG 59.745 43.478 3.84 0.75 0.00 3.82
698 1113 3.495331 TGATTTGCATACCTGGTTGTGT 58.505 40.909 3.84 0.00 0.00 3.72
699 1114 4.724074 ATGATTTGCATACCTGGTTGTG 57.276 40.909 3.84 6.09 34.82 3.33
700 1115 5.509498 ACTATGATTTGCATACCTGGTTGT 58.491 37.500 3.84 0.00 38.44 3.32
701 1116 6.319658 AGAACTATGATTTGCATACCTGGTTG 59.680 38.462 3.84 4.66 38.44 3.77
702 1117 6.426587 AGAACTATGATTTGCATACCTGGTT 58.573 36.000 3.84 0.00 38.44 3.67
703 1118 6.006275 AGAACTATGATTTGCATACCTGGT 57.994 37.500 4.05 4.05 38.44 4.00
704 1119 6.949352 AAGAACTATGATTTGCATACCTGG 57.051 37.500 0.00 0.00 38.44 4.45
714 1129 6.916360 TTTCCCTGCAAAGAACTATGATTT 57.084 33.333 0.00 0.00 0.00 2.17
715 1130 7.486407 AATTTCCCTGCAAAGAACTATGATT 57.514 32.000 0.00 0.00 0.00 2.57
719 1134 6.286240 GGAAATTTCCCTGCAAAGAACTAT 57.714 37.500 24.44 0.00 41.62 2.12
739 1154 3.129113 TCGACGAACTAAATCATCGGGAA 59.871 43.478 0.00 0.00 40.71 3.97
741 1156 3.074504 TCGACGAACTAAATCATCGGG 57.925 47.619 0.00 0.00 40.71 5.14
774 1189 3.906218 TGGAGGGATCGATGATGATTTCT 59.094 43.478 0.54 0.00 0.00 2.52
775 1190 4.277515 TGGAGGGATCGATGATGATTTC 57.722 45.455 0.54 0.00 0.00 2.17
776 1191 4.923516 ATGGAGGGATCGATGATGATTT 57.076 40.909 0.54 0.00 0.00 2.17
777 1192 4.567116 CCAATGGAGGGATCGATGATGATT 60.567 45.833 0.54 0.00 0.00 2.57
779 1194 2.303890 CCAATGGAGGGATCGATGATGA 59.696 50.000 0.54 0.00 0.00 2.92
780 1195 2.303890 TCCAATGGAGGGATCGATGATG 59.696 50.000 0.54 0.00 0.00 3.07
782 1197 1.694150 GTCCAATGGAGGGATCGATGA 59.306 52.381 0.27 0.00 36.67 2.92
793 1210 2.831526 TCTGAATCTCACGTCCAATGGA 59.168 45.455 0.00 0.00 0.00 3.41
794 1211 3.251479 TCTGAATCTCACGTCCAATGG 57.749 47.619 0.00 0.00 0.00 3.16
797 1214 4.743057 ATCATCTGAATCTCACGTCCAA 57.257 40.909 0.00 0.00 0.00 3.53
798 1215 4.743057 AATCATCTGAATCTCACGTCCA 57.257 40.909 0.00 0.00 0.00 4.02
799 1216 4.260538 GCAAATCATCTGAATCTCACGTCC 60.261 45.833 0.00 0.00 0.00 4.79
800 1217 4.260538 GGCAAATCATCTGAATCTCACGTC 60.261 45.833 0.00 0.00 0.00 4.34
801 1218 3.624861 GGCAAATCATCTGAATCTCACGT 59.375 43.478 0.00 0.00 0.00 4.49
802 1219 3.003068 GGGCAAATCATCTGAATCTCACG 59.997 47.826 0.00 0.00 0.00 4.35
803 1220 4.036498 CAGGGCAAATCATCTGAATCTCAC 59.964 45.833 0.00 0.00 0.00 3.51
804 1221 4.080186 TCAGGGCAAATCATCTGAATCTCA 60.080 41.667 0.00 0.00 33.87 3.27
847 1265 4.291783 GCTAGTCCGTTATGCTACTCTTG 58.708 47.826 0.00 0.00 0.00 3.02
913 1331 1.338200 GGTGAAGCGTGTGAGGAAGAT 60.338 52.381 0.00 0.00 0.00 2.40
972 1424 9.134734 GTTTTCTGCTATACATATAGTGAGAGC 57.865 37.037 7.57 0.00 38.30 4.09
1077 1529 0.687354 GCAGAAGGAAGAGGGTGACA 59.313 55.000 0.00 0.00 0.00 3.58
1081 1533 1.925972 GGGGCAGAAGGAAGAGGGT 60.926 63.158 0.00 0.00 0.00 4.34
1098 1550 2.511600 GAGGACATCGCCGGTTGG 60.512 66.667 1.90 0.00 38.77 3.77
1101 1553 3.771160 GTGGAGGACATCGCCGGT 61.771 66.667 1.90 0.00 38.24 5.28
1179 1631 0.878523 CGTTCTGGTTGTTCTCGCCA 60.879 55.000 0.00 0.00 0.00 5.69
1308 1760 1.528824 CATTCCGGAGTCCATGCCT 59.471 57.895 10.49 0.00 0.00 4.75
1323 1775 4.809496 CCCTGGAGCGCTGCCATT 62.809 66.667 26.87 0.00 34.33 3.16
1337 1789 1.674057 CTCGTTGTCTCCTTGCCCT 59.326 57.895 0.00 0.00 0.00 5.19
1348 1800 0.249322 CACCTTGTCGACCTCGTTGT 60.249 55.000 14.12 0.00 40.80 3.32
1426 1878 4.284860 CTCGATGGCGGCGATGGA 62.285 66.667 12.98 5.85 37.13 3.41
1456 1908 2.685387 ATCTTCGTCTCGGCATCGGC 62.685 60.000 0.00 0.00 40.13 5.54
1461 1913 1.511305 GGTCATCTTCGTCTCGGCA 59.489 57.895 0.00 0.00 0.00 5.69
1465 1917 0.802607 GTGGCGGTCATCTTCGTCTC 60.803 60.000 0.00 0.00 31.68 3.36
1497 1949 0.319297 ACTCGTCGTTGCAGGTAACC 60.319 55.000 0.00 0.00 37.17 2.85
1500 1952 0.669619 TGAACTCGTCGTTGCAGGTA 59.330 50.000 0.00 0.00 35.56 3.08
1643 2099 6.697455 ACGTATGCCGAATAGAGCAATATATG 59.303 38.462 0.00 0.00 43.36 1.78
1806 2281 7.410120 TCTGTAGCTGTCTTGATATGAAGAA 57.590 36.000 6.17 0.00 33.73 2.52
1820 2295 4.566004 TGCGAAATTAGTTCTGTAGCTGT 58.434 39.130 0.00 0.00 33.70 4.40
1863 2339 2.555199 ACACGATAGCTCTTGGCATTC 58.445 47.619 0.00 0.00 44.79 2.67
1921 2397 1.952102 TATGAGGTGAACCGGTCCGC 61.952 60.000 8.04 7.70 42.08 5.54
1939 2415 2.496070 CTCGAAGGGTGATTGGAGTGTA 59.504 50.000 0.00 0.00 32.26 2.90
1942 2418 1.938585 TCTCGAAGGGTGATTGGAGT 58.061 50.000 0.00 0.00 36.66 3.85
1985 2462 6.808704 GCCTGAAATTAACCAAAGAATGACTC 59.191 38.462 0.00 0.00 0.00 3.36
2070 2547 4.119862 CCTGTCGTATATGTTGAACCCTG 58.880 47.826 0.00 0.00 0.00 4.45
2071 2548 4.028131 TCCTGTCGTATATGTTGAACCCT 58.972 43.478 0.00 0.00 0.00 4.34
2079 2556 5.276461 TGCTTGAATCCTGTCGTATATGT 57.724 39.130 0.00 0.00 0.00 2.29
2107 2584 5.911752 ACATTATCTCTAGAACCAGTGCTG 58.088 41.667 0.00 0.00 0.00 4.41
2109 2586 6.818644 TGAAACATTATCTCTAGAACCAGTGC 59.181 38.462 0.00 0.00 0.00 4.40
2189 2708 7.624549 AGTGCATCTCTGAGAAACCTTATTTA 58.375 34.615 12.00 0.00 0.00 1.40
2214 2733 6.560003 TCCTCATATCCTTTCAAGTTGCTA 57.440 37.500 0.00 0.00 0.00 3.49
2230 2749 8.806429 TTTTTGTTGCTCAGATAATCCTCATA 57.194 30.769 0.00 0.00 0.00 2.15
2243 2762 4.505922 CGTTTGCCTAATTTTTGTTGCTCA 59.494 37.500 0.00 0.00 0.00 4.26
2284 2809 7.273712 GGATTTTACTTACCCTCTCCTAGTTG 58.726 42.308 0.00 0.00 0.00 3.16
2334 2859 3.502211 GGAAGCGAGAATGGTTCTTTTCA 59.498 43.478 5.77 0.00 43.89 2.69
2476 3001 0.238817 GCGGAACATGCGGTTTGTTA 59.761 50.000 0.00 0.00 40.63 2.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.