Multiple sequence alignment - TraesCS6D01G010400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G010400 chr6D 100.000 2492 0 0 1 2492 3931655 3934146 0.000000e+00 4602
1 TraesCS6D01G010400 chr6D 83.768 499 66 11 1031 1524 3922006 3922494 2.260000e-125 459
2 TraesCS6D01G010400 chr6D 85.460 337 43 4 529 864 3918859 3919190 1.830000e-91 346
3 TraesCS6D01G010400 chr6D 89.516 124 10 3 2215 2336 293936886 293936764 1.190000e-33 154
4 TraesCS6D01G010400 chr6B 89.126 1876 124 19 344 2168 8774478 8772632 0.000000e+00 2261
5 TraesCS6D01G010400 chr6B 82.927 615 68 15 368 976 8780925 8780342 1.020000e-143 520
6 TraesCS6D01G010400 chr6B 90.435 345 31 2 1 343 8774865 8774521 1.050000e-123 453
7 TraesCS6D01G010400 chr6A 81.449 345 44 9 629 964 3662623 3662290 5.280000e-67 265
8 TraesCS6D01G010400 chr6A 91.489 188 8 1 1523 1702 3661636 3661449 4.110000e-63 252
9 TraesCS6D01G010400 chr6A 86.705 173 18 2 2321 2490 3660873 3660703 1.180000e-43 187
10 TraesCS6D01G010400 chr4A 92.727 110 7 1 2215 2323 622287832 622287941 9.230000e-35 158
11 TraesCS6D01G010400 chr7B 89.600 125 9 4 2215 2337 615378095 615378217 3.320000e-34 156
12 TraesCS6D01G010400 chr5D 92.661 109 6 2 2217 2323 529825512 529825620 3.320000e-34 156
13 TraesCS6D01G010400 chr5D 89.256 121 10 3 2206 2323 149640316 149640436 5.550000e-32 148
14 TraesCS6D01G010400 chr5B 90.756 119 8 3 2215 2331 508186392 508186509 3.320000e-34 156
15 TraesCS6D01G010400 chr5A 90.678 118 10 1 2215 2331 547605553 547605436 3.320000e-34 156
16 TraesCS6D01G010400 chr3D 87.692 130 12 4 2215 2343 316862464 316862338 5.550000e-32 148
17 TraesCS6D01G010400 chr3D 89.256 121 10 3 2215 2334 359861430 359861548 5.550000e-32 148


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G010400 chr6D 3931655 3934146 2491 False 4602.000000 4602 100.000000 1 2492 1 chr6D.!!$F1 2491
1 TraesCS6D01G010400 chr6D 3918859 3922494 3635 False 402.500000 459 84.614000 529 1524 2 chr6D.!!$F2 995
2 TraesCS6D01G010400 chr6B 8772632 8774865 2233 True 1357.000000 2261 89.780500 1 2168 2 chr6B.!!$R2 2167
3 TraesCS6D01G010400 chr6B 8780342 8780925 583 True 520.000000 520 82.927000 368 976 1 chr6B.!!$R1 608
4 TraesCS6D01G010400 chr6A 3660703 3662623 1920 True 234.666667 265 86.547667 629 2490 3 chr6A.!!$R1 1861

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
201 204 0.238553 TGTCGAGTCGTCAGCTGAAG 59.761 55.0 20.19 21.19 0.0 3.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2188 5220 0.038166 GAACAAGAGGGCCCACATCA 59.962 55.0 27.56 0.0 30.77 3.07 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
38 39 3.057019 CAACTAGCGTGCACAAGAACTA 58.943 45.455 18.64 8.71 0.00 2.24
63 65 1.372683 GACTCCTGTCAGCTTGCCA 59.627 57.895 0.00 0.00 42.48 4.92
81 83 1.510776 CAAAACATGGCACGGCAAAT 58.489 45.000 0.00 0.00 0.00 2.32
154 157 5.587043 ACTCGTCTTCTTGTACTCTCTATGG 59.413 44.000 0.00 0.00 0.00 2.74
160 163 7.121463 GTCTTCTTGTACTCTCTATGGTCTTCA 59.879 40.741 0.00 0.00 0.00 3.02
170 173 5.102953 TCTATGGTCTTCATTCAGTTGGG 57.897 43.478 0.00 0.00 37.30 4.12
196 199 2.089349 GGCTTGTCGAGTCGTCAGC 61.089 63.158 13.12 16.68 0.00 4.26
201 204 0.238553 TGTCGAGTCGTCAGCTGAAG 59.761 55.000 20.19 21.19 0.00 3.02
202 205 0.517755 GTCGAGTCGTCAGCTGAAGA 59.482 55.000 25.74 25.74 0.00 2.87
216 219 2.482839 GCTGAAGATACAGGTGCTCCTC 60.483 54.545 3.81 0.00 43.07 3.71
221 224 2.172930 AGATACAGGTGCTCCTCGACTA 59.827 50.000 3.81 0.00 43.07 2.59
224 227 0.965866 CAGGTGCTCCTCGACTACCA 60.966 60.000 3.81 0.00 43.07 3.25
257 260 7.718314 ACATCCACATATTAGCATGCTATATGG 59.282 37.037 32.59 28.66 31.75 2.74
265 268 7.918536 ATTAGCATGCTATATGGAGAAACAG 57.081 36.000 27.35 0.00 0.00 3.16
267 270 5.303971 AGCATGCTATATGGAGAAACAGAC 58.696 41.667 21.21 0.00 0.00 3.51
275 278 1.768275 TGGAGAAACAGACAGCCTCAA 59.232 47.619 0.00 0.00 0.00 3.02
289 292 1.807142 GCCTCAAGCAAGTACTCAACC 59.193 52.381 0.00 0.00 42.97 3.77
290 293 2.810400 GCCTCAAGCAAGTACTCAACCA 60.810 50.000 0.00 0.00 42.97 3.67
300 303 1.191647 GTACTCAACCAAGTTGTCGCG 59.808 52.381 0.00 0.00 43.23 5.87
308 311 1.795872 CCAAGTTGTCGCGTGTTCATA 59.204 47.619 5.77 0.00 0.00 2.15
321 324 3.128415 CGTGTTCATATTCATGTTGGCCA 59.872 43.478 0.00 0.00 33.57 5.36
326 329 3.570975 TCATATTCATGTTGGCCAGCATC 59.429 43.478 30.06 11.60 33.57 3.91
331 334 2.231964 TCATGTTGGCCAGCATCTTTTC 59.768 45.455 30.06 3.55 29.52 2.29
337 340 0.449388 GCCAGCATCTTTTCGACCAG 59.551 55.000 0.00 0.00 0.00 4.00
339 342 1.734465 CCAGCATCTTTTCGACCAGAC 59.266 52.381 0.00 0.00 0.00 3.51
348 393 2.971660 TTCGACCAGACACAGTCAAA 57.028 45.000 0.00 0.00 34.60 2.69
349 394 3.469008 TTCGACCAGACACAGTCAAAT 57.531 42.857 0.00 0.00 34.60 2.32
359 404 5.812642 CAGACACAGTCAAATATACACCTCC 59.187 44.000 0.00 0.00 34.60 4.30
362 407 3.134081 ACAGTCAAATATACACCTCCCCG 59.866 47.826 0.00 0.00 0.00 5.73
366 411 2.704065 CAAATATACACCTCCCCGGACT 59.296 50.000 0.73 0.00 36.31 3.85
374 419 4.153330 TCCCCGGACTAGCCCTCC 62.153 72.222 0.73 0.00 0.00 4.30
430 475 5.757320 ACATCTTCTCTTTGTTGTCAGTGAG 59.243 40.000 0.00 0.00 0.00 3.51
481 526 2.159653 GCATCGATCAACACAACTCACC 60.160 50.000 0.00 0.00 0.00 4.02
486 531 5.487433 TCGATCAACACAACTCACCATATT 58.513 37.500 0.00 0.00 0.00 1.28
497 542 5.991328 ACTCACCATATTGTTAAGCATCG 57.009 39.130 0.00 0.00 0.00 3.84
508 553 4.883083 TGTTAAGCATCGAAAGTCACTCT 58.117 39.130 0.00 0.00 0.00 3.24
520 565 5.164012 CGAAAGTCACTCTTTGCATCACTAG 60.164 44.000 0.00 0.00 45.15 2.57
655 705 2.899256 TGTACCGTAGTGGGCTTAAACT 59.101 45.455 0.00 0.00 44.64 2.66
661 711 4.322198 CCGTAGTGGGCTTAAACTGTTCTA 60.322 45.833 0.00 0.00 0.00 2.10
669 719 5.533528 GGGCTTAAACTGTTCTACTTCCAAA 59.466 40.000 0.00 0.00 0.00 3.28
676 726 6.787085 ACTGTTCTACTTCCAAAGAAATCG 57.213 37.500 0.00 0.00 33.70 3.34
755 812 3.806380 AGTTGATGTCTGATCCATCTGC 58.194 45.455 10.56 5.08 39.54 4.26
756 813 3.455177 AGTTGATGTCTGATCCATCTGCT 59.545 43.478 10.56 6.71 39.54 4.24
763 820 3.036091 TCTGATCCATCTGCTCACATGA 58.964 45.455 0.00 0.00 0.00 3.07
771 828 1.465777 TCTGCTCACATGAATTGCACG 59.534 47.619 0.00 0.02 0.00 5.34
857 922 5.352016 GCTAAGATGGATCAGATTCATGAGC 59.648 44.000 9.14 10.65 34.85 4.26
858 923 4.976540 AGATGGATCAGATTCATGAGCA 57.023 40.909 9.14 0.00 37.33 4.26
899 964 2.483188 CCGGCCGGCCTCTTTATATATC 60.483 54.545 41.01 12.17 0.00 1.63
940 1005 0.839277 CCCATCCATCCAGCTACACA 59.161 55.000 0.00 0.00 0.00 3.72
1089 3947 4.477975 CTCGTCGTCGGAGCCCAC 62.478 72.222 1.55 0.00 37.69 4.61
1249 4107 2.285743 GGGGAGGACTTGGGCTCT 60.286 66.667 0.00 0.00 0.00 4.09
1257 4115 4.351054 CTTGGGCTCTTGGCGGGT 62.351 66.667 0.00 0.00 42.94 5.28
1367 4240 4.025647 CGACGAAGAGAAAAAGAAGCAAGT 60.026 41.667 0.00 0.00 0.00 3.16
1502 4378 1.777941 AGAGGGTGATAAGTCGGTCC 58.222 55.000 0.00 0.00 0.00 4.46
1510 4386 1.623542 ATAAGTCGGTCCCCTGGCAC 61.624 60.000 0.00 0.00 0.00 5.01
1608 4548 7.100409 TCAATCTTGTACGTTGTTATCATGGA 58.900 34.615 0.00 0.00 0.00 3.41
1612 4552 6.533723 TCTTGTACGTTGTTATCATGGATGTC 59.466 38.462 0.00 0.00 0.00 3.06
1718 4670 7.666623 TCCATTTTGAAATAAAAGGAGGTGAC 58.333 34.615 0.00 0.00 31.84 3.67
1724 4676 7.938140 TGAAATAAAAGGAGGTGACATAAGG 57.062 36.000 0.00 0.00 0.00 2.69
1738 4690 6.346096 GTGACATAAGGAAACTGCAGGTATA 58.654 40.000 19.93 3.84 42.68 1.47
1754 4724 6.016360 TGCAGGTATATGTTGCCAATATGTTC 60.016 38.462 0.00 0.00 37.03 3.18
1771 4741 2.814919 TGTTCGACAACTGGTTTTGTGT 59.185 40.909 0.00 0.00 39.88 3.72
1782 4752 4.221342 CTGGTTTTGTGTCATCGATTGTG 58.779 43.478 0.00 0.00 0.00 3.33
1784 4754 4.336713 TGGTTTTGTGTCATCGATTGTGAA 59.663 37.500 0.00 0.00 0.00 3.18
1816 4786 5.476752 AAGAAGATGTTTAAGCGCTGATC 57.523 39.130 12.58 8.06 0.00 2.92
1825 4795 5.163864 TGTTTAAGCGCTGATCATACAACTG 60.164 40.000 12.58 0.00 0.00 3.16
1881 4851 5.010820 AGCGTAAGACAGAGGAGTAAACTTT 59.989 40.000 0.00 0.00 43.02 2.66
1904 4877 6.892658 TTTTTAGCTAGCTTGTTGATGGAA 57.107 33.333 24.88 4.47 0.00 3.53
1905 4878 6.500684 TTTTAGCTAGCTTGTTGATGGAAG 57.499 37.500 24.88 0.00 0.00 3.46
1906 4879 2.363683 AGCTAGCTTGTTGATGGAAGC 58.636 47.619 12.68 0.00 44.16 3.86
1931 4904 9.166173 GCAAAGCAAGTGGATATATATGTATCA 57.834 33.333 18.04 5.16 33.64 2.15
1935 4908 9.672673 AGCAAGTGGATATATATGTATCAAACC 57.327 33.333 18.04 5.27 33.64 3.27
1940 4913 7.499232 GTGGATATATATGTATCAAACCTGGGC 59.501 40.741 18.04 2.19 33.64 5.36
1943 4916 9.277783 GATATATATGTATCAAACCTGGGCATC 57.722 37.037 13.07 0.00 32.52 3.91
1944 4917 3.668141 ATGTATCAAACCTGGGCATCA 57.332 42.857 0.00 0.00 0.00 3.07
1949 4922 4.524802 ATCAAACCTGGGCATCAATCTA 57.475 40.909 0.00 0.00 0.00 1.98
1971 4944 2.641305 GAGATGCCATGAGCTCAAACT 58.359 47.619 22.50 8.12 44.23 2.66
1972 4945 3.739209 CGAGATGCCATGAGCTCAAACTA 60.739 47.826 22.50 8.50 44.23 2.24
2001 4974 3.380486 GCATGACAGTGCATATATCGC 57.620 47.619 0.00 1.55 44.43 4.58
2002 4975 2.222663 GCATGACAGTGCATATATCGCG 60.223 50.000 0.00 0.00 44.43 5.87
2004 4977 0.716108 GACAGTGCATATATCGCGCC 59.284 55.000 0.00 0.00 40.80 6.53
2005 4978 0.318441 ACAGTGCATATATCGCGCCT 59.682 50.000 0.00 0.00 40.80 5.52
2006 4979 0.717784 CAGTGCATATATCGCGCCTG 59.282 55.000 0.00 11.52 40.80 4.85
2007 4980 0.318441 AGTGCATATATCGCGCCTGT 59.682 50.000 0.00 0.00 40.80 4.00
2008 4981 1.544246 AGTGCATATATCGCGCCTGTA 59.456 47.619 0.00 0.00 40.80 2.74
2009 4982 1.654105 GTGCATATATCGCGCCTGTAC 59.346 52.381 0.00 0.00 33.75 2.90
2010 4983 1.544246 TGCATATATCGCGCCTGTACT 59.456 47.619 0.00 0.00 0.00 2.73
2016 5000 2.021068 ATCGCGCCTGTACTCATGCT 62.021 55.000 0.00 0.00 34.01 3.79
2079 5063 3.144506 CACCATAGCCATTGATCCAGAC 58.855 50.000 0.00 0.00 0.00 3.51
2082 5066 4.285517 ACCATAGCCATTGATCCAGACTAG 59.714 45.833 0.00 0.00 0.00 2.57
2107 5091 3.053619 ACTTTAACATCCACCCATCCTCC 60.054 47.826 0.00 0.00 0.00 4.30
2129 5113 4.262207 CCCGCTGTAGCCATATATCCATAG 60.262 50.000 0.00 0.00 37.91 2.23
2132 5116 5.053145 GCTGTAGCCATATATCCATAGTGC 58.947 45.833 0.00 0.00 34.31 4.40
2133 5117 5.605534 CTGTAGCCATATATCCATAGTGCC 58.394 45.833 0.00 0.00 0.00 5.01
2134 5118 3.827008 AGCCATATATCCATAGTGCCG 57.173 47.619 0.00 0.00 0.00 5.69
2144 5128 1.290203 CATAGTGCCGTACCAGCTTG 58.710 55.000 4.36 0.00 0.00 4.01
2154 5138 3.945285 CCGTACCAGCTTGGATGTAAAAT 59.055 43.478 8.91 0.00 40.96 1.82
2155 5139 4.201910 CCGTACCAGCTTGGATGTAAAATG 60.202 45.833 8.91 0.00 40.96 2.32
2165 5149 3.942748 TGGATGTAAAATGGACGTAAGCC 59.057 43.478 0.00 0.00 45.62 4.35
2166 5150 3.942748 GGATGTAAAATGGACGTAAGCCA 59.057 43.478 0.00 0.00 45.15 4.75
2167 5151 4.035208 GGATGTAAAATGGACGTAAGCCAG 59.965 45.833 0.68 0.00 44.50 4.85
2168 5152 2.745281 TGTAAAATGGACGTAAGCCAGC 59.255 45.455 0.68 0.00 44.50 4.85
2182 5214 2.331098 CAGCTCGCGGTGCAAAAA 59.669 55.556 22.46 0.00 0.00 1.94
2188 5220 2.862512 CTCGCGGTGCAAAAATGTATT 58.137 42.857 6.13 0.00 0.00 1.89
2189 5221 2.590073 TCGCGGTGCAAAAATGTATTG 58.410 42.857 6.13 0.00 0.00 1.90
2191 5223 3.119673 TCGCGGTGCAAAAATGTATTGAT 60.120 39.130 6.13 0.00 0.00 2.57
2194 5226 4.201608 GCGGTGCAAAAATGTATTGATGTG 60.202 41.667 0.00 0.00 0.00 3.21
2195 5227 4.326817 CGGTGCAAAAATGTATTGATGTGG 59.673 41.667 0.00 0.00 0.00 4.17
2196 5228 4.630940 GGTGCAAAAATGTATTGATGTGGG 59.369 41.667 0.00 0.00 0.00 4.61
2197 5229 4.093261 GTGCAAAAATGTATTGATGTGGGC 59.907 41.667 0.00 0.00 0.00 5.36
2198 5230 3.622612 GCAAAAATGTATTGATGTGGGCC 59.377 43.478 0.00 0.00 0.00 5.80
2205 5237 0.706433 ATTGATGTGGGCCCTCTTGT 59.294 50.000 25.70 9.98 0.00 3.16
2212 5244 2.342648 GGCCCTCTTGTTCGTCGT 59.657 61.111 0.00 0.00 0.00 4.34
2215 5247 1.606224 GGCCCTCTTGTTCGTCGTTTA 60.606 52.381 0.00 0.00 0.00 2.01
2216 5248 1.725164 GCCCTCTTGTTCGTCGTTTAG 59.275 52.381 0.00 0.00 0.00 1.85
2217 5249 2.865276 GCCCTCTTGTTCGTCGTTTAGT 60.865 50.000 0.00 0.00 0.00 2.24
2218 5250 3.387397 CCCTCTTGTTCGTCGTTTAGTT 58.613 45.455 0.00 0.00 0.00 2.24
2220 5252 4.271776 CCCTCTTGTTCGTCGTTTAGTTTT 59.728 41.667 0.00 0.00 0.00 2.43
2221 5253 5.463061 CCCTCTTGTTCGTCGTTTAGTTTTA 59.537 40.000 0.00 0.00 0.00 1.52
2222 5254 6.346359 CCCTCTTGTTCGTCGTTTAGTTTTAG 60.346 42.308 0.00 0.00 0.00 1.85
2223 5255 6.199719 CCTCTTGTTCGTCGTTTAGTTTTAGT 59.800 38.462 0.00 0.00 0.00 2.24
2224 5256 7.254218 CCTCTTGTTCGTCGTTTAGTTTTAGTT 60.254 37.037 0.00 0.00 0.00 2.24
2225 5257 7.962917 TCTTGTTCGTCGTTTAGTTTTAGTTT 58.037 30.769 0.00 0.00 0.00 2.66
2226 5258 8.442384 TCTTGTTCGTCGTTTAGTTTTAGTTTT 58.558 29.630 0.00 0.00 0.00 2.43
2227 5259 7.935804 TGTTCGTCGTTTAGTTTTAGTTTTG 57.064 32.000 0.00 0.00 0.00 2.44
2228 5260 6.465465 TGTTCGTCGTTTAGTTTTAGTTTTGC 59.535 34.615 0.00 0.00 0.00 3.68
2229 5261 6.104439 TCGTCGTTTAGTTTTAGTTTTGCA 57.896 33.333 0.00 0.00 0.00 4.08
2230 5262 6.186785 TCGTCGTTTAGTTTTAGTTTTGCAG 58.813 36.000 0.00 0.00 0.00 4.41
2231 5263 6.035866 TCGTCGTTTAGTTTTAGTTTTGCAGA 59.964 34.615 0.00 0.00 0.00 4.26
2232 5264 6.849305 CGTCGTTTAGTTTTAGTTTTGCAGAT 59.151 34.615 0.00 0.00 0.00 2.90
2233 5265 7.149351 CGTCGTTTAGTTTTAGTTTTGCAGATG 60.149 37.037 0.00 0.00 0.00 2.90
2234 5266 7.853929 GTCGTTTAGTTTTAGTTTTGCAGATGA 59.146 33.333 0.00 0.00 0.00 2.92
2235 5267 8.564574 TCGTTTAGTTTTAGTTTTGCAGATGAT 58.435 29.630 0.00 0.00 0.00 2.45
2236 5268 8.840867 CGTTTAGTTTTAGTTTTGCAGATGATC 58.159 33.333 0.00 0.00 0.00 2.92
2237 5269 9.677567 GTTTAGTTTTAGTTTTGCAGATGATCA 57.322 29.630 0.00 0.00 0.00 2.92
2275 5307 8.840833 AAATTTGGTCAAACTTTGTGTAGTTT 57.159 26.923 1.44 0.00 46.42 2.66
2284 5316 4.993905 ACTTTGTGTAGTTTGACTTTGGC 58.006 39.130 0.00 0.00 0.00 4.52
2285 5317 4.142249 ACTTTGTGTAGTTTGACTTTGGCC 60.142 41.667 0.00 0.00 0.00 5.36
2286 5318 3.006112 TGTGTAGTTTGACTTTGGCCA 57.994 42.857 0.00 0.00 0.00 5.36
2287 5319 3.357203 TGTGTAGTTTGACTTTGGCCAA 58.643 40.909 16.05 16.05 0.00 4.52
2288 5320 3.764434 TGTGTAGTTTGACTTTGGCCAAA 59.236 39.130 28.65 28.65 0.00 3.28
2289 5321 4.404073 TGTGTAGTTTGACTTTGGCCAAAT 59.596 37.500 30.46 19.95 35.14 2.32
2290 5322 5.105146 TGTGTAGTTTGACTTTGGCCAAATT 60.105 36.000 30.46 25.21 35.14 1.82
2291 5323 5.815222 GTGTAGTTTGACTTTGGCCAAATTT 59.185 36.000 30.46 20.36 35.14 1.82
2292 5324 6.981559 GTGTAGTTTGACTTTGGCCAAATTTA 59.018 34.615 30.46 19.24 35.14 1.40
2293 5325 7.655732 GTGTAGTTTGACTTTGGCCAAATTTAT 59.344 33.333 30.46 16.46 35.14 1.40
2295 5327 9.135843 GTAGTTTGACTTTGGCCAAATTTATAC 57.864 33.333 30.46 23.57 35.14 1.47
2296 5328 6.866248 AGTTTGACTTTGGCCAAATTTATACG 59.134 34.615 30.46 18.91 35.14 3.06
2297 5329 4.739195 TGACTTTGGCCAAATTTATACGC 58.261 39.130 30.46 12.65 0.00 4.42
2298 5330 3.765026 ACTTTGGCCAAATTTATACGCG 58.235 40.909 30.46 17.51 0.00 6.01
2300 5332 4.082679 ACTTTGGCCAAATTTATACGCGAA 60.083 37.500 30.46 4.37 0.00 4.70
2301 5333 3.684103 TGGCCAAATTTATACGCGAAG 57.316 42.857 15.93 0.00 0.00 3.79
2302 5334 3.011119 TGGCCAAATTTATACGCGAAGT 58.989 40.909 15.93 0.00 0.00 3.01
2303 5335 4.190001 TGGCCAAATTTATACGCGAAGTA 58.810 39.130 15.93 0.00 40.03 2.24
2304 5336 4.634883 TGGCCAAATTTATACGCGAAGTAA 59.365 37.500 15.93 5.78 39.04 2.24
2305 5337 5.123502 TGGCCAAATTTATACGCGAAGTAAA 59.876 36.000 15.93 14.69 39.04 2.01
2306 5338 6.028987 GGCCAAATTTATACGCGAAGTAAAA 58.971 36.000 15.93 6.22 39.04 1.52
2307 5339 6.527372 GGCCAAATTTATACGCGAAGTAAAAA 59.473 34.615 15.93 4.71 39.04 1.94
2308 5340 7.253519 GGCCAAATTTATACGCGAAGTAAAAAG 60.254 37.037 15.93 8.65 39.04 2.27
2309 5341 7.482428 GCCAAATTTATACGCGAAGTAAAAAGA 59.518 33.333 15.93 0.00 39.04 2.52
2310 5342 9.332301 CCAAATTTATACGCGAAGTAAAAAGAA 57.668 29.630 15.93 0.00 39.04 2.52
2313 5345 9.881529 AATTTATACGCGAAGTAAAAAGAAACA 57.118 25.926 15.93 0.00 39.04 2.83
2315 5347 6.774354 ATACGCGAAGTAAAAAGAAACAGA 57.226 33.333 15.93 0.00 39.04 3.41
2316 5348 5.079397 ACGCGAAGTAAAAAGAAACAGAG 57.921 39.130 15.93 0.00 0.00 3.35
2317 5349 4.025145 ACGCGAAGTAAAAAGAAACAGAGG 60.025 41.667 15.93 0.00 0.00 3.69
2319 5351 4.514066 GCGAAGTAAAAAGAAACAGAGGGA 59.486 41.667 0.00 0.00 0.00 4.20
2320 5352 5.334182 GCGAAGTAAAAAGAAACAGAGGGAG 60.334 44.000 0.00 0.00 0.00 4.30
2322 5354 6.927381 CGAAGTAAAAAGAAACAGAGGGAGTA 59.073 38.462 0.00 0.00 0.00 2.59
2323 5355 7.440255 CGAAGTAAAAAGAAACAGAGGGAGTAA 59.560 37.037 0.00 0.00 0.00 2.24
2327 5361 8.986847 GTAAAAAGAAACAGAGGGAGTAAGTAC 58.013 37.037 0.00 0.00 0.00 2.73
2336 5370 6.095160 ACAGAGGGAGTAAGTACGTATGAAAG 59.905 42.308 0.00 0.00 0.00 2.62
2341 5375 6.529477 GGGAGTAAGTACGTATGAAAGAACAC 59.471 42.308 0.00 0.00 0.00 3.32
2353 5387 5.666969 TGAAAGAACACACTTCCATAACG 57.333 39.130 0.00 0.00 0.00 3.18
2400 5437 7.759489 AACATGAACCAAACTAAATAGCTCA 57.241 32.000 0.00 0.00 0.00 4.26
2401 5438 7.944729 ACATGAACCAAACTAAATAGCTCAT 57.055 32.000 0.00 0.00 0.00 2.90
2432 5469 5.633830 AAATCGAATTCAAGCTCACATGT 57.366 34.783 6.22 0.00 0.00 3.21
2464 5501 9.260002 GATTTTCTGTTGGTCAAATTAACACAT 57.740 29.630 0.00 0.00 31.64 3.21
2471 5508 8.561212 TGTTGGTCAAATTAACACATACACTAC 58.439 33.333 0.00 0.00 30.06 2.73
2472 5509 8.780249 GTTGGTCAAATTAACACATACACTACT 58.220 33.333 0.00 0.00 0.00 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 3.437049 GTCCCAGATTAGTTCTTGTGCAC 59.563 47.826 10.75 10.75 29.93 4.57
38 39 0.908198 GCTGACAGGAGTCCCAGATT 59.092 55.000 15.79 0.00 44.33 2.40
63 65 3.393089 TTATTTGCCGTGCCATGTTTT 57.607 38.095 0.00 0.00 0.00 2.43
102 104 6.440965 AGGGACTGTTAGCAAGTAATCTAACT 59.559 38.462 11.77 0.00 42.94 2.24
154 157 4.335416 TGAATCCCCAACTGAATGAAGAC 58.665 43.478 0.00 0.00 0.00 3.01
160 163 2.023695 AGCCATGAATCCCCAACTGAAT 60.024 45.455 0.00 0.00 0.00 2.57
170 173 1.936547 GACTCGACAAGCCATGAATCC 59.063 52.381 0.00 0.00 0.00 3.01
210 213 2.787567 GGGCTGGTAGTCGAGGAGC 61.788 68.421 0.00 0.00 0.00 4.70
216 219 0.460284 GATGTGTGGGCTGGTAGTCG 60.460 60.000 0.00 0.00 0.00 4.18
221 224 1.792757 ATGTGGATGTGTGGGCTGGT 61.793 55.000 0.00 0.00 0.00 4.00
224 227 3.748668 GCTAATATGTGGATGTGTGGGCT 60.749 47.826 0.00 0.00 0.00 5.19
257 260 1.803555 GCTTGAGGCTGTCTGTTTCTC 59.196 52.381 0.00 0.00 38.06 2.87
265 268 2.289072 TGAGTACTTGCTTGAGGCTGTC 60.289 50.000 0.00 0.00 42.39 3.51
267 270 2.462456 TGAGTACTTGCTTGAGGCTG 57.538 50.000 0.00 0.00 42.39 4.85
275 278 3.877508 GACAACTTGGTTGAGTACTTGCT 59.122 43.478 15.89 0.00 45.28 3.91
280 283 1.191647 CGCGACAACTTGGTTGAGTAC 59.808 52.381 15.89 0.00 45.28 2.73
281 284 1.202440 ACGCGACAACTTGGTTGAGTA 60.202 47.619 15.93 0.00 45.28 2.59
289 292 3.722555 ATATGAACACGCGACAACTTG 57.277 42.857 15.93 0.68 0.00 3.16
290 293 3.743911 TGAATATGAACACGCGACAACTT 59.256 39.130 15.93 5.47 0.00 2.66
300 303 4.675510 CTGGCCAACATGAATATGAACAC 58.324 43.478 7.01 0.00 37.73 3.32
308 311 2.154567 AGATGCTGGCCAACATGAAT 57.845 45.000 26.04 4.40 0.00 2.57
321 324 2.224281 TGTGTCTGGTCGAAAAGATGCT 60.224 45.455 1.95 0.00 0.00 3.79
326 329 2.821546 TGACTGTGTCTGGTCGAAAAG 58.178 47.619 0.00 0.00 35.45 2.27
331 334 5.288712 GTGTATATTTGACTGTGTCTGGTCG 59.711 44.000 0.00 0.00 35.45 4.79
337 340 5.116882 GGGAGGTGTATATTTGACTGTGTC 58.883 45.833 0.00 0.00 0.00 3.67
339 342 4.451900 GGGGAGGTGTATATTTGACTGTG 58.548 47.826 0.00 0.00 0.00 3.66
348 393 2.557005 GCTAGTCCGGGGAGGTGTATAT 60.557 54.545 0.00 0.00 41.99 0.86
349 394 1.202976 GCTAGTCCGGGGAGGTGTATA 60.203 57.143 0.00 0.00 41.99 1.47
359 404 2.365105 TTGGAGGGCTAGTCCGGG 60.365 66.667 7.97 0.00 36.82 5.73
362 407 0.253327 CAAGGTTGGAGGGCTAGTCC 59.747 60.000 4.79 4.79 34.31 3.85
374 419 1.956477 AGCTAAAGTGTGCCAAGGTTG 59.044 47.619 0.00 0.00 0.00 3.77
382 427 1.740025 GGGTGATGAGCTAAAGTGTGC 59.260 52.381 0.00 0.00 0.00 4.57
392 437 2.119801 AGATGTGTTGGGTGATGAGC 57.880 50.000 0.00 0.00 0.00 4.26
430 475 9.512435 ACATGTATTGTCGTACAGTAAGTAATC 57.488 33.333 0.00 0.00 37.93 1.75
463 508 2.900716 TGGTGAGTTGTGTTGATCGA 57.099 45.000 0.00 0.00 0.00 3.59
464 509 5.122239 ACAATATGGTGAGTTGTGTTGATCG 59.878 40.000 0.00 0.00 34.98 3.69
465 510 6.500684 ACAATATGGTGAGTTGTGTTGATC 57.499 37.500 0.00 0.00 34.98 2.92
466 511 6.899393 AACAATATGGTGAGTTGTGTTGAT 57.101 33.333 0.00 0.00 36.31 2.57
481 526 7.688372 AGTGACTTTCGATGCTTAACAATATG 58.312 34.615 0.00 0.00 0.00 1.78
486 531 4.883083 AGAGTGACTTTCGATGCTTAACA 58.117 39.130 0.00 0.00 0.00 2.41
497 542 5.121454 CCTAGTGATGCAAAGAGTGACTTTC 59.879 44.000 0.00 0.00 45.66 2.62
508 553 7.230510 AGTTAAATGAACACCTAGTGATGCAAA 59.769 33.333 0.96 0.00 40.86 3.68
520 565 5.175673 GCAAAAGCTCAGTTAAATGAACACC 59.824 40.000 7.08 0.00 40.86 4.16
559 604 0.040514 TGTGCTTTTTCCGTGCATCG 60.041 50.000 0.00 0.00 39.00 3.84
655 705 5.049680 GCACGATTTCTTTGGAAGTAGAACA 60.050 40.000 0.00 0.00 32.61 3.18
661 711 3.632145 ACTTGCACGATTTCTTTGGAAGT 59.368 39.130 0.00 2.30 44.29 3.01
669 719 4.457834 AGCTACTACTTGCACGATTTCT 57.542 40.909 0.00 0.00 0.00 2.52
731 781 5.183969 CAGATGGATCAGACATCAACTTGT 58.816 41.667 11.52 0.00 45.49 3.16
755 812 1.129879 GCGCGTGCAATTCATGTGAG 61.130 55.000 17.66 2.35 43.17 3.51
756 813 1.154244 GCGCGTGCAATTCATGTGA 60.154 52.632 17.66 0.00 43.17 3.58
763 820 3.803082 ATCTGCGCGCGTGCAATT 61.803 55.556 41.76 30.36 45.74 2.32
782 839 1.004277 CGCAAGAGGTATCGATCCGC 61.004 60.000 0.00 5.36 43.02 5.54
899 964 1.878656 GAGGAGACGGGGACACACAG 61.879 65.000 0.00 0.00 0.00 3.66
940 1005 3.830744 TTGTGGTGTGTGTAGCTAACT 57.169 42.857 0.00 0.00 0.00 2.24
1089 3947 1.853963 TTTCTCCTTCTCTCCTCCCG 58.146 55.000 0.00 0.00 0.00 5.14
1257 4115 3.657038 CTCCCTTCCCTCCGTCGGA 62.657 68.421 14.54 14.54 0.00 4.55
1261 4119 2.203938 TTGCTCCCTTCCCTCCGT 60.204 61.111 0.00 0.00 0.00 4.69
1344 4217 4.025647 ACTTGCTTCTTTTTCTCTTCGTCG 60.026 41.667 0.00 0.00 0.00 5.12
1346 4219 4.035675 CCACTTGCTTCTTTTTCTCTTCGT 59.964 41.667 0.00 0.00 0.00 3.85
1482 4358 2.423947 GGGACCGACTTATCACCCTCTA 60.424 54.545 0.00 0.00 32.68 2.43
1608 4548 4.514401 GGGAAAATGGAAGTACTCGACAT 58.486 43.478 0.00 0.00 0.00 3.06
1612 4552 3.343941 TGGGGAAAATGGAAGTACTCG 57.656 47.619 0.00 0.00 0.00 4.18
1718 4670 7.642669 CAACATATACCTGCAGTTTCCTTATG 58.357 38.462 13.81 12.33 0.00 1.90
1724 4676 3.694072 TGGCAACATATACCTGCAGTTTC 59.306 43.478 13.81 0.00 46.17 2.78
1738 4690 4.458989 AGTTGTCGAACATATTGGCAACAT 59.541 37.500 13.80 0.00 39.88 2.71
1754 4724 3.617669 GATGACACAAAACCAGTTGTCG 58.382 45.455 0.00 0.00 39.73 4.35
1771 4741 7.602265 TCTTTTGTATCACTTCACAATCGATGA 59.398 33.333 0.00 0.00 34.78 2.92
1784 4754 8.230486 CGCTTAAACATCTTCTTTTGTATCACT 58.770 33.333 0.00 0.00 0.00 3.41
1850 4820 2.425312 CCTCTGTCTTACGCTCTCATGT 59.575 50.000 0.00 0.00 0.00 3.21
1856 4826 4.156373 AGTTTACTCCTCTGTCTTACGCTC 59.844 45.833 0.00 0.00 0.00 5.03
1881 4851 6.570378 GCTTCCATCAACAAGCTAGCTAAAAA 60.570 38.462 19.70 3.37 41.61 1.94
1896 4869 2.036217 CCACTTGCTTTGCTTCCATCAA 59.964 45.455 0.00 0.00 0.00 2.57
1899 4872 1.999648 TCCACTTGCTTTGCTTCCAT 58.000 45.000 0.00 0.00 0.00 3.41
1900 4873 1.999648 ATCCACTTGCTTTGCTTCCA 58.000 45.000 0.00 0.00 0.00 3.53
1901 4874 7.175641 ACATATATATCCACTTGCTTTGCTTCC 59.824 37.037 0.00 0.00 0.00 3.46
1903 4876 9.745018 ATACATATATATCCACTTGCTTTGCTT 57.255 29.630 0.00 0.00 0.00 3.91
1904 4877 9.388506 GATACATATATATCCACTTGCTTTGCT 57.611 33.333 0.00 0.00 0.00 3.91
1905 4878 9.166173 TGATACATATATATCCACTTGCTTTGC 57.834 33.333 0.00 0.00 31.53 3.68
1931 4904 2.238646 TCGTAGATTGATGCCCAGGTTT 59.761 45.455 0.00 0.00 0.00 3.27
1935 4908 3.324117 CATCTCGTAGATTGATGCCCAG 58.676 50.000 0.00 0.00 33.56 4.45
1940 4913 4.563061 TCATGGCATCTCGTAGATTGATG 58.437 43.478 0.00 0.00 40.69 3.07
1943 4916 2.735663 GCTCATGGCATCTCGTAGATTG 59.264 50.000 0.00 0.00 41.35 2.67
1944 4917 2.632028 AGCTCATGGCATCTCGTAGATT 59.368 45.455 0.00 0.00 44.79 2.40
1949 4922 0.538584 TTGAGCTCATGGCATCTCGT 59.461 50.000 19.04 0.00 44.79 4.18
1986 4959 0.318441 AGGCGCGATATATGCACTGT 59.682 50.000 12.10 0.00 0.00 3.55
2004 4977 8.618677 ACAAATATCATTGAAGCATGAGTACAG 58.381 33.333 0.00 0.00 34.38 2.74
2005 4978 8.510243 ACAAATATCATTGAAGCATGAGTACA 57.490 30.769 0.00 0.00 34.38 2.90
2007 4980 9.276590 CCTACAAATATCATTGAAGCATGAGTA 57.723 33.333 0.00 0.00 34.38 2.59
2008 4981 7.994911 TCCTACAAATATCATTGAAGCATGAGT 59.005 33.333 0.00 0.00 34.38 3.41
2009 4982 8.288208 GTCCTACAAATATCATTGAAGCATGAG 58.712 37.037 0.00 0.00 34.38 2.90
2010 4983 7.774625 TGTCCTACAAATATCATTGAAGCATGA 59.225 33.333 0.00 0.00 34.38 3.07
2016 5000 8.471609 TCTACGTGTCCTACAAATATCATTGAA 58.528 33.333 0.00 0.00 34.38 2.69
2079 5063 6.318900 GGATGGGTGGATGTTAAAGTTTCTAG 59.681 42.308 0.00 0.00 0.00 2.43
2082 5066 5.016831 AGGATGGGTGGATGTTAAAGTTTC 58.983 41.667 0.00 0.00 0.00 2.78
2107 5091 3.827008 ATGGATATATGGCTACAGCGG 57.173 47.619 0.00 0.00 43.26 5.52
2132 5116 2.684001 TTACATCCAAGCTGGTACGG 57.316 50.000 0.00 0.00 39.03 4.02
2133 5117 4.201910 CCATTTTACATCCAAGCTGGTACG 60.202 45.833 0.00 0.00 39.03 3.67
2134 5118 4.947388 TCCATTTTACATCCAAGCTGGTAC 59.053 41.667 0.00 0.00 39.03 3.34
2144 5128 3.942748 TGGCTTACGTCCATTTTACATCC 59.057 43.478 0.00 0.00 0.00 3.51
2154 5138 2.571757 CGAGCTGGCTTACGTCCA 59.428 61.111 0.00 0.00 0.00 4.02
2155 5139 2.886124 GCGAGCTGGCTTACGTCC 60.886 66.667 14.13 0.00 0.00 4.79
2165 5149 1.081242 ATTTTTGCACCGCGAGCTG 60.081 52.632 20.97 9.10 0.00 4.24
2166 5150 1.081242 CATTTTTGCACCGCGAGCT 60.081 52.632 20.97 0.00 0.00 4.09
2167 5151 0.109964 TACATTTTTGCACCGCGAGC 60.110 50.000 8.23 12.67 0.00 5.03
2168 5152 2.542766 ATACATTTTTGCACCGCGAG 57.457 45.000 8.23 0.00 0.00 5.03
2182 5214 2.138542 AGAGGGCCCACATCAATACAT 58.861 47.619 27.56 0.00 30.77 2.29
2188 5220 0.038166 GAACAAGAGGGCCCACATCA 59.962 55.000 27.56 0.00 30.77 3.07
2189 5221 1.026718 CGAACAAGAGGGCCCACATC 61.027 60.000 27.56 13.69 0.00 3.06
2191 5223 2.391724 GACGAACAAGAGGGCCCACA 62.392 60.000 27.56 0.00 0.00 4.17
2194 5226 2.434359 CGACGAACAAGAGGGCCC 60.434 66.667 16.46 16.46 0.00 5.80
2195 5227 0.883370 AAACGACGAACAAGAGGGCC 60.883 55.000 0.00 0.00 0.00 5.80
2196 5228 1.725164 CTAAACGACGAACAAGAGGGC 59.275 52.381 0.00 0.00 0.00 5.19
2197 5229 3.022607 ACTAAACGACGAACAAGAGGG 57.977 47.619 0.00 0.00 0.00 4.30
2198 5230 5.399604 AAAACTAAACGACGAACAAGAGG 57.600 39.130 0.00 0.00 0.00 3.69
2205 5237 6.541086 TGCAAAACTAAAACTAAACGACGAA 58.459 32.000 0.00 0.00 0.00 3.85
2249 5281 9.930693 AAACTACACAAAGTTTGACCAAATTTA 57.069 25.926 22.23 0.00 45.60 1.40
2261 5293 5.407502 GCCAAAGTCAAACTACACAAAGTT 58.592 37.500 0.00 0.00 41.46 2.66
2262 5294 4.142249 GGCCAAAGTCAAACTACACAAAGT 60.142 41.667 0.00 0.00 0.00 2.66
2264 5296 3.764434 TGGCCAAAGTCAAACTACACAAA 59.236 39.130 0.61 0.00 0.00 2.83
2275 5307 4.673061 CGCGTATAAATTTGGCCAAAGTCA 60.673 41.667 32.85 20.37 33.32 3.41
2276 5308 3.789224 CGCGTATAAATTTGGCCAAAGTC 59.211 43.478 32.85 18.72 33.32 3.01
2277 5309 3.440872 TCGCGTATAAATTTGGCCAAAGT 59.559 39.130 32.85 29.07 33.32 2.66
2278 5310 4.022464 TCGCGTATAAATTTGGCCAAAG 57.978 40.909 32.85 19.62 33.32 2.77
2280 5312 3.440872 ACTTCGCGTATAAATTTGGCCAA 59.559 39.130 16.05 16.05 0.00 4.52
2282 5314 3.685836 ACTTCGCGTATAAATTTGGCC 57.314 42.857 5.77 0.00 0.00 5.36
2283 5315 7.482428 TCTTTTTACTTCGCGTATAAATTTGGC 59.518 33.333 5.77 0.00 31.59 4.52
2284 5316 8.883789 TCTTTTTACTTCGCGTATAAATTTGG 57.116 30.769 5.77 1.98 31.59 3.28
2287 5319 9.881529 TGTTTCTTTTTACTTCGCGTATAAATT 57.118 25.926 5.77 0.00 31.59 1.82
2288 5320 9.537848 CTGTTTCTTTTTACTTCGCGTATAAAT 57.462 29.630 5.77 0.00 31.59 1.40
2289 5321 8.763356 TCTGTTTCTTTTTACTTCGCGTATAAA 58.237 29.630 5.77 7.04 31.29 1.40
2290 5322 8.296799 TCTGTTTCTTTTTACTTCGCGTATAA 57.703 30.769 5.77 0.37 0.00 0.98
2291 5323 7.062605 CCTCTGTTTCTTTTTACTTCGCGTATA 59.937 37.037 5.77 0.00 0.00 1.47
2292 5324 6.128634 CCTCTGTTTCTTTTTACTTCGCGTAT 60.129 38.462 5.77 0.00 0.00 3.06
2293 5325 5.176223 CCTCTGTTTCTTTTTACTTCGCGTA 59.824 40.000 5.77 0.00 0.00 4.42
2295 5327 4.455124 CCTCTGTTTCTTTTTACTTCGCG 58.545 43.478 0.00 0.00 0.00 5.87
2296 5328 4.514066 TCCCTCTGTTTCTTTTTACTTCGC 59.486 41.667 0.00 0.00 0.00 4.70
2297 5329 5.758784 ACTCCCTCTGTTTCTTTTTACTTCG 59.241 40.000 0.00 0.00 0.00 3.79
2298 5330 8.672823 TTACTCCCTCTGTTTCTTTTTACTTC 57.327 34.615 0.00 0.00 0.00 3.01
2300 5332 7.803131 ACTTACTCCCTCTGTTTCTTTTTACT 58.197 34.615 0.00 0.00 0.00 2.24
2301 5333 8.986847 GTACTTACTCCCTCTGTTTCTTTTTAC 58.013 37.037 0.00 0.00 0.00 2.01
2302 5334 7.869429 CGTACTTACTCCCTCTGTTTCTTTTTA 59.131 37.037 0.00 0.00 0.00 1.52
2303 5335 6.704937 CGTACTTACTCCCTCTGTTTCTTTTT 59.295 38.462 0.00 0.00 0.00 1.94
2304 5336 6.183360 ACGTACTTACTCCCTCTGTTTCTTTT 60.183 38.462 0.00 0.00 0.00 2.27
2305 5337 5.303845 ACGTACTTACTCCCTCTGTTTCTTT 59.696 40.000 0.00 0.00 0.00 2.52
2306 5338 4.831710 ACGTACTTACTCCCTCTGTTTCTT 59.168 41.667 0.00 0.00 0.00 2.52
2307 5339 4.405548 ACGTACTTACTCCCTCTGTTTCT 58.594 43.478 0.00 0.00 0.00 2.52
2308 5340 4.780275 ACGTACTTACTCCCTCTGTTTC 57.220 45.455 0.00 0.00 0.00 2.78
2309 5341 5.948162 TCATACGTACTTACTCCCTCTGTTT 59.052 40.000 0.00 0.00 0.00 2.83
2310 5342 5.503927 TCATACGTACTTACTCCCTCTGTT 58.496 41.667 0.00 0.00 0.00 3.16
2311 5343 5.108187 TCATACGTACTTACTCCCTCTGT 57.892 43.478 0.00 0.00 0.00 3.41
2312 5344 6.318144 TCTTTCATACGTACTTACTCCCTCTG 59.682 42.308 0.00 0.00 0.00 3.35
2313 5345 6.421485 TCTTTCATACGTACTTACTCCCTCT 58.579 40.000 0.00 0.00 0.00 3.69
2315 5347 6.435277 TGTTCTTTCATACGTACTTACTCCCT 59.565 38.462 0.00 0.00 0.00 4.20
2316 5348 6.529477 GTGTTCTTTCATACGTACTTACTCCC 59.471 42.308 0.00 0.00 0.00 4.30
2317 5349 7.061557 GTGTGTTCTTTCATACGTACTTACTCC 59.938 40.741 0.00 0.00 0.00 3.85
2319 5351 7.655490 AGTGTGTTCTTTCATACGTACTTACT 58.345 34.615 0.00 0.00 35.23 2.24
2320 5352 7.864307 AGTGTGTTCTTTCATACGTACTTAC 57.136 36.000 0.00 0.00 35.23 2.34
2322 5354 6.423001 GGAAGTGTGTTCTTTCATACGTACTT 59.577 38.462 0.00 0.00 35.23 2.24
2323 5355 5.924825 GGAAGTGTGTTCTTTCATACGTACT 59.075 40.000 0.00 0.00 35.23 2.73
2327 5361 5.862924 ATGGAAGTGTGTTCTTTCATACG 57.137 39.130 0.00 0.00 40.58 3.06
2336 5370 2.546368 TGTGCGTTATGGAAGTGTGTTC 59.454 45.455 0.00 0.00 0.00 3.18
2374 5411 8.637986 TGAGCTATTTAGTTTGGTTCATGTTTT 58.362 29.630 0.00 0.00 0.00 2.43
2408 5445 4.326413 TGTGAGCTTGAATTCGATTTCG 57.674 40.909 13.66 0.00 41.45 3.46
2418 5455 6.395426 AATCAGAAAACATGTGAGCTTGAA 57.605 33.333 0.00 0.00 34.38 2.69
2425 5462 6.979817 CCAACAGAAAATCAGAAAACATGTGA 59.020 34.615 0.00 0.00 35.53 3.58
2426 5463 6.757947 ACCAACAGAAAATCAGAAAACATGTG 59.242 34.615 0.00 0.00 0.00 3.21


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.