Multiple sequence alignment - TraesCS6D01G010100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G010100 chr6D 100.000 5822 0 0 1 5822 3850857 3856678 0.000000e+00 10752.0
1 TraesCS6D01G010100 chr6D 89.877 405 39 2 4435 4838 3922537 3922940 2.400000e-143 520.0
2 TraesCS6D01G010100 chr6D 90.323 62 4 2 3219 3279 30094470 30094410 4.840000e-11 80.5
3 TraesCS6D01G010100 chr6D 100.000 31 0 0 14 44 48455117 48455147 2.270000e-04 58.4
4 TraesCS6D01G010100 chr6B 91.154 2340 175 16 2943 5263 8788131 8785805 0.000000e+00 3145.0
5 TraesCS6D01G010100 chr6B 91.391 906 67 5 1731 2636 8790731 8789837 0.000000e+00 1230.0
6 TraesCS6D01G010100 chr6B 94.754 629 31 2 6 633 8792585 8791958 0.000000e+00 977.0
7 TraesCS6D01G010100 chr6B 90.111 718 57 7 990 1696 8791441 8790727 0.000000e+00 920.0
8 TraesCS6D01G010100 chr6B 91.736 242 14 4 2721 2956 8789797 8789556 1.210000e-86 331.0
9 TraesCS6D01G010100 chr6B 88.770 187 6 10 798 972 8791807 8791624 1.270000e-51 215.0
10 TraesCS6D01G010100 chr6B 84.177 158 5 6 634 789 8791926 8791787 1.020000e-27 135.0
11 TraesCS6D01G010100 chr6B 100.000 47 0 0 3214 3260 96970754 96970800 2.890000e-13 87.9
12 TraesCS6D01G010100 chr6B 95.122 41 1 1 6 45 6679235 6679275 4.870000e-06 63.9
13 TraesCS6D01G010100 chr5A 81.825 1414 226 23 3423 4823 4957933 4956538 0.000000e+00 1158.0
14 TraesCS6D01G010100 chr5A 81.896 823 132 13 3789 4598 29906563 29905745 0.000000e+00 678.0
15 TraesCS6D01G010100 chr5A 81.435 237 41 2 1955 2188 4958880 4958644 2.140000e-44 191.0
16 TraesCS6D01G010100 chr5A 78.165 316 57 10 3343 3648 29907113 29906800 2.140000e-44 191.0
17 TraesCS6D01G010100 chr5A 90.722 97 9 0 2784 2880 4958193 4958097 4.730000e-26 130.0
18 TraesCS6D01G010100 chr5D 81.767 1415 225 24 3423 4823 7502890 7501495 0.000000e+00 1153.0
19 TraesCS6D01G010100 chr5D 79.103 1048 202 13 3789 4823 41605118 41604075 0.000000e+00 706.0
20 TraesCS6D01G010100 chr5D 85.227 176 26 0 3473 3648 41605548 41605373 1.290000e-41 182.0
21 TraesCS6D01G010100 chr5D 90.722 97 9 0 2784 2880 7503152 7503056 4.730000e-26 130.0
22 TraesCS6D01G010100 chr5D 93.846 65 3 1 3343 3407 41605725 41605662 4.800000e-16 97.1
23 TraesCS6D01G010100 chr5B 80.777 1415 239 25 3423 4823 7707702 7706307 0.000000e+00 1075.0
24 TraesCS6D01G010100 chr5B 79.866 1048 192 15 3789 4822 36237761 36236719 0.000000e+00 749.0
25 TraesCS6D01G010100 chr5B 93.846 65 3 1 3343 3407 36238504 36238441 4.800000e-16 97.1
26 TraesCS6D01G010100 chr6A 82.288 638 79 18 4965 5591 3663477 3662863 6.690000e-144 521.0
27 TraesCS6D01G010100 chr3D 86.810 326 40 3 5500 5822 128424330 128424655 1.540000e-95 361.0
28 TraesCS6D01G010100 chr3D 85.802 324 42 4 5500 5822 573856690 573857010 2.010000e-89 340.0
29 TraesCS6D01G010100 chr3D 85.139 323 48 0 5500 5822 547419008 547418686 1.210000e-86 331.0
30 TraesCS6D01G010100 chr2B 86.420 324 43 1 5500 5822 643688251 643688574 2.580000e-93 353.0
31 TraesCS6D01G010100 chrUn 86.111 324 45 0 5499 5822 115224522 115224845 3.340000e-92 350.0
32 TraesCS6D01G010100 chr4D 86.378 323 41 3 5500 5822 503993937 503994256 3.340000e-92 350.0
33 TraesCS6D01G010100 chr7D 86.164 318 44 0 5500 5817 382382165 382382482 1.550000e-90 344.0
34 TraesCS6D01G010100 chr3A 85.759 323 46 0 5500 5822 465207780 465207458 5.590000e-90 342.0
35 TraesCS6D01G010100 chr4A 85.449 323 47 0 5500 5822 170620757 170620435 2.600000e-88 337.0
36 TraesCS6D01G010100 chr7A 82.014 278 38 8 3789 4057 15525081 15524807 5.870000e-55 226.0
37 TraesCS6D01G010100 chr7A 91.525 59 4 1 3209 3267 486086913 486086970 4.840000e-11 80.5
38 TraesCS6D01G010100 chr7B 98.000 50 1 0 3211 3260 450564928 450564977 2.890000e-13 87.9
39 TraesCS6D01G010100 chr7B 90.909 66 5 1 3193 3258 572403165 572403101 2.890000e-13 87.9
40 TraesCS6D01G010100 chr7B 94.444 54 3 0 3214 3267 53250571 53250624 3.740000e-12 84.2
41 TraesCS6D01G010100 chr2D 96.226 53 0 2 3209 3260 25037873 25037924 1.040000e-12 86.1
42 TraesCS6D01G010100 chr4B 96.154 52 1 1 3209 3260 404569962 404569912 3.740000e-12 84.2
43 TraesCS6D01G010100 chr3B 91.525 59 3 2 3217 3274 622391509 622391566 4.840000e-11 80.5
44 TraesCS6D01G010100 chr3B 91.304 46 3 1 6 50 228739052 228739007 1.750000e-05 62.1
45 TraesCS6D01G010100 chr3B 97.059 34 1 0 14 47 326875446 326875413 2.270000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G010100 chr6D 3850857 3856678 5821 False 10752.000000 10752 100.000000 1 5822 1 chr6D.!!$F1 5821
1 TraesCS6D01G010100 chr6B 8785805 8792585 6780 True 993.285714 3145 90.299000 6 5263 7 chr6B.!!$R1 5257
2 TraesCS6D01G010100 chr5A 4956538 4958880 2342 True 493.000000 1158 84.660667 1955 4823 3 chr5A.!!$R1 2868
3 TraesCS6D01G010100 chr5A 29905745 29907113 1368 True 434.500000 678 80.030500 3343 4598 2 chr5A.!!$R2 1255
4 TraesCS6D01G010100 chr5D 7501495 7503152 1657 True 641.500000 1153 86.244500 2784 4823 2 chr5D.!!$R1 2039
5 TraesCS6D01G010100 chr5D 41604075 41605725 1650 True 328.366667 706 86.058667 3343 4823 3 chr5D.!!$R2 1480
6 TraesCS6D01G010100 chr5B 7706307 7707702 1395 True 1075.000000 1075 80.777000 3423 4823 1 chr5B.!!$R1 1400
7 TraesCS6D01G010100 chr5B 36236719 36238504 1785 True 423.050000 749 86.856000 3343 4822 2 chr5B.!!$R2 1479
8 TraesCS6D01G010100 chr6A 3662863 3663477 614 True 521.000000 521 82.288000 4965 5591 1 chr6A.!!$R1 626

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
732 765 0.030369 CGTATCTAGGCCACACGGAC 59.970 60.0 5.01 0.00 43.02 4.79 F
1793 2015 0.254178 CCTGGATCAACCCCTCACAG 59.746 60.0 0.00 0.00 38.00 3.66 F
3594 5542 0.109272 CACGTGCGCTCTTCTTCCTA 60.109 55.0 9.73 0.00 0.00 2.94 F
4186 6264 0.588233 CTACGTGGCGCACTACTACG 60.588 60.0 10.83 11.92 40.30 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2349 2574 0.240945 CCTTGCGCTCCGTGAAATTT 59.759 50.0 9.73 0.0 0.00 1.82 R
3753 5732 0.103208 GATGGTAGCCAGTGTCGAGG 59.897 60.0 0.00 0.0 36.75 4.63 R
4624 6711 0.319641 AAGTCCTCGAACGCCTTGTC 60.320 55.0 0.00 0.0 0.00 3.18 R
5657 7756 0.040646 TCTTAGCCGGAAGACTGGGA 59.959 55.0 5.05 0.0 42.48 4.37 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 7.410120 AATCTCCAAAAGGCTTATGTTTAGG 57.590 36.000 0.00 0.00 0.00 2.69
162 164 0.899720 TACGTTTGGTAGCCTCCAGG 59.100 55.000 0.00 0.00 38.80 4.45
261 263 6.483974 TGTGTTGAAACCGTATGTGTATCTTT 59.516 34.615 0.00 0.00 0.00 2.52
270 272 6.980978 ACCGTATGTGTATCTTTCTCTCATTG 59.019 38.462 0.00 0.00 0.00 2.82
273 275 9.899226 CGTATGTGTATCTTTCTCTCATTGATA 57.101 33.333 0.00 0.00 0.00 2.15
279 281 8.417106 TGTATCTTTCTCTCATTGATACAGACC 58.583 37.037 9.24 0.00 42.22 3.85
287 289 5.658634 TCTCATTGATACAGACCAACTAGCT 59.341 40.000 0.00 0.00 0.00 3.32
367 369 2.512515 GCCATCGGCCTCTCACAC 60.513 66.667 0.00 0.00 44.06 3.82
370 372 3.083997 ATCGGCCTCTCACACCCC 61.084 66.667 0.00 0.00 0.00 4.95
376 378 2.358737 CTCTCACACCCCGCCAAC 60.359 66.667 0.00 0.00 0.00 3.77
584 586 5.580297 TCAAGCACTTCAAAATGTTTGGAAC 59.420 36.000 1.90 0.00 37.55 3.62
602 604 3.068590 GGAACCATACATGCATTCCCTTG 59.931 47.826 0.00 0.00 36.39 3.61
692 725 2.368548 GGAACCCAGCCAAAAGAACAAT 59.631 45.455 0.00 0.00 0.00 2.71
702 735 4.453136 GCCAAAAGAACAATACTGGACGTA 59.547 41.667 0.00 0.00 0.00 3.57
703 736 5.616204 GCCAAAAGAACAATACTGGACGTAC 60.616 44.000 0.00 0.00 0.00 3.67
714 747 0.388006 TGGACGTACATGCACTCACG 60.388 55.000 0.00 12.65 40.15 4.35
718 751 2.782192 GACGTACATGCACTCACGTATC 59.218 50.000 18.03 6.64 46.66 2.24
719 752 2.422479 ACGTACATGCACTCACGTATCT 59.578 45.455 16.92 0.00 45.04 1.98
720 753 3.624410 ACGTACATGCACTCACGTATCTA 59.376 43.478 16.92 0.00 45.04 1.98
721 754 4.212150 CGTACATGCACTCACGTATCTAG 58.788 47.826 7.44 0.00 0.00 2.43
722 755 3.717400 ACATGCACTCACGTATCTAGG 57.283 47.619 0.00 0.00 0.00 3.02
723 756 2.223829 ACATGCACTCACGTATCTAGGC 60.224 50.000 0.00 0.00 0.00 3.93
724 757 0.744874 TGCACTCACGTATCTAGGCC 59.255 55.000 0.00 0.00 0.00 5.19
725 758 0.744874 GCACTCACGTATCTAGGCCA 59.255 55.000 5.01 0.00 0.00 5.36
726 759 1.536284 GCACTCACGTATCTAGGCCAC 60.536 57.143 5.01 0.00 0.00 5.01
727 760 1.749063 CACTCACGTATCTAGGCCACA 59.251 52.381 5.01 0.00 0.00 4.17
728 761 1.749634 ACTCACGTATCTAGGCCACAC 59.250 52.381 5.01 0.00 0.00 3.82
729 762 0.736636 TCACGTATCTAGGCCACACG 59.263 55.000 5.01 9.27 38.52 4.49
730 763 0.248907 CACGTATCTAGGCCACACGG 60.249 60.000 5.01 0.00 36.95 4.94
731 764 0.394762 ACGTATCTAGGCCACACGGA 60.395 55.000 5.01 0.00 36.95 4.69
732 765 0.030369 CGTATCTAGGCCACACGGAC 59.970 60.000 5.01 0.00 43.02 4.79
773 806 1.000385 ACCACACGACATTTTGCATGG 60.000 47.619 0.00 0.00 0.00 3.66
774 807 1.269174 CCACACGACATTTTGCATGGA 59.731 47.619 0.00 0.00 0.00 3.41
775 808 2.318578 CACACGACATTTTGCATGGAC 58.681 47.619 0.00 0.00 0.00 4.02
776 809 2.030893 CACACGACATTTTGCATGGACT 60.031 45.455 0.00 0.00 0.00 3.85
777 810 3.188254 CACACGACATTTTGCATGGACTA 59.812 43.478 0.00 0.00 0.00 2.59
778 811 3.188460 ACACGACATTTTGCATGGACTAC 59.812 43.478 0.00 0.00 0.00 2.73
779 812 3.188254 CACGACATTTTGCATGGACTACA 59.812 43.478 0.00 0.00 0.00 2.74
780 813 4.009675 ACGACATTTTGCATGGACTACAT 58.990 39.130 0.00 0.00 41.57 2.29
781 814 5.064579 CACGACATTTTGCATGGACTACATA 59.935 40.000 0.00 0.00 37.84 2.29
782 815 5.822519 ACGACATTTTGCATGGACTACATAT 59.177 36.000 0.00 0.00 37.84 1.78
783 816 6.989759 ACGACATTTTGCATGGACTACATATA 59.010 34.615 0.00 0.00 37.84 0.86
784 817 7.661437 ACGACATTTTGCATGGACTACATATAT 59.339 33.333 0.00 0.00 37.84 0.86
785 818 9.150348 CGACATTTTGCATGGACTACATATATA 57.850 33.333 0.00 0.00 37.84 0.86
788 821 9.726232 CATTTTGCATGGACTACATATATATGC 57.274 33.333 20.46 8.24 37.84 3.14
789 822 9.690913 ATTTTGCATGGACTACATATATATGCT 57.309 29.630 20.46 11.43 39.91 3.79
790 823 8.496707 TTTGCATGGACTACATATATATGCTG 57.503 34.615 20.46 15.55 39.91 4.41
791 824 6.051074 TGCATGGACTACATATATATGCTGC 58.949 40.000 20.46 16.51 39.91 5.25
792 825 6.051074 GCATGGACTACATATATATGCTGCA 58.949 40.000 20.46 14.76 37.84 4.41
793 826 6.709397 GCATGGACTACATATATATGCTGCAT 59.291 38.462 20.18 20.18 37.84 3.96
794 827 7.307811 GCATGGACTACATATATATGCTGCATG 60.308 40.741 26.21 26.21 37.84 4.06
795 828 7.422465 TGGACTACATATATATGCTGCATGA 57.578 36.000 24.59 12.88 37.19 3.07
796 829 7.495055 TGGACTACATATATATGCTGCATGAG 58.505 38.462 24.59 10.06 37.19 2.90
797 830 7.124750 TGGACTACATATATATGCTGCATGAGT 59.875 37.037 24.59 14.62 37.19 3.41
798 831 7.437565 GGACTACATATATATGCTGCATGAGTG 59.562 40.741 24.59 16.54 37.19 3.51
799 832 6.760298 ACTACATATATATGCTGCATGAGTGC 59.240 38.462 24.59 0.00 43.25 4.40
800 833 5.493809 ACATATATATGCTGCATGAGTGCA 58.506 37.500 24.59 4.11 46.68 4.57
801 834 6.120220 ACATATATATGCTGCATGAGTGCAT 58.880 36.000 24.59 19.15 46.53 3.96
802 835 6.602009 ACATATATATGCTGCATGAGTGCATT 59.398 34.615 24.59 12.89 46.53 3.56
853 886 4.138487 ACCGTCCATAGAAATGTTCTCC 57.862 45.455 0.00 0.00 41.14 3.71
863 896 2.180159 AATGTTCTCCACGTCCGGGG 62.180 60.000 0.00 0.37 40.85 5.73
864 897 4.078516 GTTCTCCACGTCCGGGGG 62.079 72.222 8.32 0.64 39.67 5.40
937 982 4.260985 CCCTGCTACATACAAACATCACA 58.739 43.478 0.00 0.00 0.00 3.58
939 984 4.201714 CCTGCTACATACAAACATCACACG 60.202 45.833 0.00 0.00 0.00 4.49
941 986 4.387559 TGCTACATACAAACATCACACGTC 59.612 41.667 0.00 0.00 0.00 4.34
972 1017 7.801104 TCTCTATAAATACAACATGCCTTCCA 58.199 34.615 0.00 0.00 0.00 3.53
975 1023 6.849085 ATAAATACAACATGCCTTCCACAA 57.151 33.333 0.00 0.00 0.00 3.33
978 1026 2.880443 ACAACATGCCTTCCACAATCT 58.120 42.857 0.00 0.00 0.00 2.40
988 1036 1.896220 TCCACAATCTCTTGCACACC 58.104 50.000 0.00 0.00 35.69 4.16
997 1207 3.728845 TCTCTTGCACACCAGAAAGTAC 58.271 45.455 0.00 0.00 0.00 2.73
1059 1269 1.228245 ACATGGTGCTCCGTTTGCT 60.228 52.632 0.00 0.00 36.30 3.91
1088 1298 2.680913 CGCTGGTTCCAAAGGCTCG 61.681 63.158 0.00 0.00 0.00 5.03
1089 1299 2.982744 GCTGGTTCCAAAGGCTCGC 61.983 63.158 0.00 0.00 0.00 5.03
1096 1306 4.404654 CAAAGGCTCGCCGGCAAC 62.405 66.667 28.98 14.81 41.95 4.17
1123 1333 2.258013 CCTCGCCGCACCTCAAAAA 61.258 57.895 0.00 0.00 0.00 1.94
1136 1346 2.159282 CCTCAAAAATAGGCAGCAGCAG 60.159 50.000 2.65 0.00 44.61 4.24
1160 1376 2.113139 CTCCACCACCACCACCAC 59.887 66.667 0.00 0.00 0.00 4.16
1167 1383 1.152567 CACCACCACCACCACCAAT 60.153 57.895 0.00 0.00 0.00 3.16
1234 1450 3.181448 TGACCTCCACTTTGACCTTAACC 60.181 47.826 0.00 0.00 0.00 2.85
1248 1464 2.501223 TTAACCAGGCCGTCGAGCTG 62.501 60.000 0.00 0.00 0.00 4.24
1273 1489 2.761559 CCACTGTGACGGTAAACATGA 58.238 47.619 9.86 0.00 0.00 3.07
1307 1523 7.345691 TGGTTAAAAGAGGATATGCTTGATCA 58.654 34.615 0.00 0.00 0.00 2.92
1310 1526 3.699411 AGAGGATATGCTTGATCAGGC 57.301 47.619 22.04 22.04 0.00 4.85
1312 1528 0.801251 GGATATGCTTGATCAGGCGC 59.199 55.000 23.01 14.43 36.05 6.53
1314 1530 2.149578 GATATGCTTGATCAGGCGCTT 58.850 47.619 23.01 13.60 36.05 4.68
1319 1535 1.376543 CTTGATCAGGCGCTTGATGT 58.623 50.000 35.95 17.44 37.90 3.06
1320 1536 1.741706 CTTGATCAGGCGCTTGATGTT 59.258 47.619 35.95 16.66 37.90 2.71
1330 1546 2.663119 GCGCTTGATGTTTTCCACAATC 59.337 45.455 0.00 0.00 39.50 2.67
1338 1554 7.815840 TGATGTTTTCCACAATCTCTTTACA 57.184 32.000 0.00 0.00 39.50 2.41
1339 1555 7.648142 TGATGTTTTCCACAATCTCTTTACAC 58.352 34.615 0.00 0.00 39.50 2.90
1346 1562 8.870160 TTCCACAATCTCTTTACACAAAATTG 57.130 30.769 0.00 0.00 0.00 2.32
1404 1620 0.906066 GTGAGAAACCTCCCCTCTCC 59.094 60.000 0.00 0.00 35.70 3.71
1413 1629 3.148331 ACCTCCCCTCTCCCTTCTATTA 58.852 50.000 0.00 0.00 0.00 0.98
1415 1631 3.158676 CTCCCCTCTCCCTTCTATTACG 58.841 54.545 0.00 0.00 0.00 3.18
1418 1634 3.563223 CCCTCTCCCTTCTATTACGTGA 58.437 50.000 0.00 0.00 0.00 4.35
1464 1686 4.892345 TCTCTCTCTCTCTCTCTCTCTCTG 59.108 50.000 0.00 0.00 0.00 3.35
1465 1687 4.614475 TCTCTCTCTCTCTCTCTCTCTGT 58.386 47.826 0.00 0.00 0.00 3.41
1466 1688 4.403752 TCTCTCTCTCTCTCTCTCTCTGTG 59.596 50.000 0.00 0.00 0.00 3.66
1467 1689 4.352893 TCTCTCTCTCTCTCTCTCTGTGA 58.647 47.826 0.00 0.00 0.00 3.58
1468 1690 4.777366 TCTCTCTCTCTCTCTCTCTGTGAA 59.223 45.833 0.00 0.00 0.00 3.18
1469 1691 4.832248 TCTCTCTCTCTCTCTCTGTGAAC 58.168 47.826 0.00 0.00 0.00 3.18
1470 1692 3.595173 TCTCTCTCTCTCTCTGTGAACG 58.405 50.000 0.00 0.00 0.00 3.95
1471 1693 2.080693 TCTCTCTCTCTCTGTGAACGC 58.919 52.381 0.00 0.00 0.00 4.84
1472 1694 0.799393 TCTCTCTCTCTGTGAACGCG 59.201 55.000 3.53 3.53 0.00 6.01
1480 1702 1.455786 CTCTGTGAACGCGTTTGTAGG 59.544 52.381 27.32 14.91 0.00 3.18
1490 1712 3.252400 CGCGTTTGTAGGTATTGGTGTA 58.748 45.455 0.00 0.00 0.00 2.90
1496 1718 7.271868 GCGTTTGTAGGTATTGGTGTATTTTTC 59.728 37.037 0.00 0.00 0.00 2.29
1497 1719 7.751793 CGTTTGTAGGTATTGGTGTATTTTTCC 59.248 37.037 0.00 0.00 0.00 3.13
1498 1720 6.988622 TGTAGGTATTGGTGTATTTTTCCG 57.011 37.500 0.00 0.00 0.00 4.30
1503 1725 6.820152 AGGTATTGGTGTATTTTTCCGTAGAC 59.180 38.462 0.00 0.00 0.00 2.59
1509 1731 5.106830 GGTGTATTTTTCCGTAGACTTGGTG 60.107 44.000 0.00 0.00 0.00 4.17
1537 1759 8.682936 ATTTAAACAAGTCAGGGCTATATCTG 57.317 34.615 0.00 0.00 0.00 2.90
1584 1806 2.035442 GTCTCCGGCAAAGTCCAGC 61.035 63.158 0.00 0.00 0.00 4.85
1590 1812 1.845809 CGGCAAAGTCCAGCACTCAC 61.846 60.000 0.00 0.00 32.30 3.51
1602 1824 2.681778 ACTCACGGAGCCTGGAGG 60.682 66.667 0.00 0.00 32.04 4.30
1606 1828 3.673597 ACGGAGCCTGGAGGAGGA 61.674 66.667 0.00 0.00 46.33 3.71
1637 1859 1.945387 ACGATGCTAGCTTCATGGTG 58.055 50.000 25.24 13.78 32.83 4.17
1646 1868 2.823593 TTCATGGTGCCGGCATCG 60.824 61.111 35.23 20.71 0.00 3.84
1682 1904 1.194772 GCCGTGCAAGTGAAGAACTAC 59.805 52.381 0.00 0.00 38.56 2.73
1696 1918 3.965694 AGAACTACCACTACACGGAGAT 58.034 45.455 0.00 0.00 0.00 2.75
1697 1919 3.695060 AGAACTACCACTACACGGAGATG 59.305 47.826 0.00 0.00 0.00 2.90
1698 1920 3.083122 ACTACCACTACACGGAGATGT 57.917 47.619 0.00 0.00 36.56 3.06
1700 1922 2.743636 ACCACTACACGGAGATGTTG 57.256 50.000 0.00 0.00 33.85 3.33
1701 1923 1.968493 ACCACTACACGGAGATGTTGT 59.032 47.619 0.00 0.00 38.79 3.32
1702 1924 2.367567 ACCACTACACGGAGATGTTGTT 59.632 45.455 0.00 0.00 36.58 2.83
1703 1925 3.575256 ACCACTACACGGAGATGTTGTTA 59.425 43.478 0.00 0.00 36.58 2.41
1704 1926 4.174009 CCACTACACGGAGATGTTGTTAG 58.826 47.826 0.00 0.00 36.58 2.34
1705 1927 4.174009 CACTACACGGAGATGTTGTTAGG 58.826 47.826 0.00 0.00 36.58 2.69
1706 1928 2.762535 ACACGGAGATGTTGTTAGGG 57.237 50.000 0.00 0.00 0.00 3.53
1707 1929 1.278127 ACACGGAGATGTTGTTAGGGG 59.722 52.381 0.00 0.00 0.00 4.79
1708 1930 1.553248 CACGGAGATGTTGTTAGGGGA 59.447 52.381 0.00 0.00 0.00 4.81
1709 1931 1.553704 ACGGAGATGTTGTTAGGGGAC 59.446 52.381 0.00 0.00 0.00 4.46
1710 1932 1.553248 CGGAGATGTTGTTAGGGGACA 59.447 52.381 0.00 0.00 0.00 4.02
1711 1933 2.170607 CGGAGATGTTGTTAGGGGACAT 59.829 50.000 0.00 0.00 36.76 3.06
1712 1934 3.370527 CGGAGATGTTGTTAGGGGACATT 60.371 47.826 0.00 0.00 34.38 2.71
1713 1935 4.141801 CGGAGATGTTGTTAGGGGACATTA 60.142 45.833 0.00 0.00 34.38 1.90
1714 1936 5.628200 CGGAGATGTTGTTAGGGGACATTAA 60.628 44.000 0.00 0.00 34.38 1.40
1715 1937 5.823045 GGAGATGTTGTTAGGGGACATTAAG 59.177 44.000 0.00 0.00 34.38 1.85
1716 1938 5.755849 AGATGTTGTTAGGGGACATTAAGG 58.244 41.667 0.00 0.00 34.38 2.69
1717 1939 5.253096 AGATGTTGTTAGGGGACATTAAGGT 59.747 40.000 0.00 0.00 34.38 3.50
1718 1940 4.913784 TGTTGTTAGGGGACATTAAGGTC 58.086 43.478 11.77 11.77 37.06 3.85
1719 1941 4.600111 TGTTGTTAGGGGACATTAAGGTCT 59.400 41.667 18.79 3.24 37.91 3.85
1720 1942 5.073965 TGTTGTTAGGGGACATTAAGGTCTT 59.926 40.000 18.79 8.51 37.91 3.01
1721 1943 5.431179 TGTTAGGGGACATTAAGGTCTTC 57.569 43.478 18.79 11.65 37.91 2.87
1722 1944 4.226620 TGTTAGGGGACATTAAGGTCTTCC 59.773 45.833 18.79 18.63 37.91 3.46
1723 1945 2.206223 AGGGGACATTAAGGTCTTCCC 58.794 52.381 20.64 20.64 44.76 3.97
1724 1946 1.920351 GGGGACATTAAGGTCTTCCCA 59.080 52.381 22.32 0.00 46.98 4.37
1725 1947 2.092375 GGGGACATTAAGGTCTTCCCAG 60.092 54.545 22.32 0.00 46.98 4.45
1726 1948 2.644676 GGACATTAAGGTCTTCCCAGC 58.355 52.381 18.79 0.00 37.91 4.85
1727 1949 2.644676 GACATTAAGGTCTTCCCAGCC 58.355 52.381 12.86 0.00 34.92 4.85
1728 1950 1.065418 ACATTAAGGTCTTCCCAGCCG 60.065 52.381 0.00 0.00 34.66 5.52
1729 1951 0.546598 ATTAAGGTCTTCCCAGCCGG 59.453 55.000 0.00 0.00 34.66 6.13
1781 2003 0.615331 TCCACTGCAACTCCTGGATC 59.385 55.000 0.00 0.00 0.00 3.36
1793 2015 0.254178 CCTGGATCAACCCCTCACAG 59.746 60.000 0.00 0.00 38.00 3.66
1827 2049 1.473278 AGCGTAGTTTCTTCCCTCTCG 59.527 52.381 0.00 0.00 0.00 4.04
1862 2084 2.627945 TCATTACACTTCGCCATGACC 58.372 47.619 0.00 0.00 0.00 4.02
1873 2095 1.597663 CGCCATGACCGGATTTACTTC 59.402 52.381 9.46 0.00 0.00 3.01
1875 2097 2.354821 GCCATGACCGGATTTACTTCAC 59.645 50.000 9.46 0.00 0.00 3.18
1879 2101 5.125417 CCATGACCGGATTTACTTCACAAAT 59.875 40.000 9.46 0.00 0.00 2.32
1902 2124 4.413760 ACACACTACTAGGTAGGAAGCAA 58.586 43.478 9.14 0.00 40.13 3.91
2216 2441 7.656137 ACTGCCGGAAATGTACAGTATTATTAG 59.344 37.037 5.05 0.00 39.69 1.73
2219 2444 9.649167 GCCGGAAATGTACAGTATTATTAGTAT 57.351 33.333 5.05 0.00 0.00 2.12
2228 2453 9.866798 GTACAGTATTATTAGTATTACTGCCCC 57.133 37.037 19.32 9.51 42.76 5.80
2230 2455 8.813951 ACAGTATTATTAGTATTACTGCCCCTC 58.186 37.037 19.32 0.00 42.76 4.30
2231 2456 7.974501 CAGTATTATTAGTATTACTGCCCCTCG 59.025 40.741 6.60 0.00 37.67 4.63
2232 2457 7.892241 AGTATTATTAGTATTACTGCCCCTCGA 59.108 37.037 6.60 0.00 30.03 4.04
2233 2458 6.982160 TTATTAGTATTACTGCCCCTCGAA 57.018 37.500 6.60 0.00 0.00 3.71
2234 2459 4.931661 TTAGTATTACTGCCCCTCGAAG 57.068 45.455 6.60 0.00 0.00 3.79
2235 2460 1.413077 AGTATTACTGCCCCTCGAAGC 59.587 52.381 0.00 0.00 0.00 3.86
2247 2472 4.025401 CGAAGCCGCAACCGCTTT 62.025 61.111 0.00 0.00 33.31 3.51
2256 2481 3.122445 GCCGCAACCGCTTTACTATATAC 59.878 47.826 0.00 0.00 35.30 1.47
2349 2574 3.527533 CATTTATGTTCCCGAGGACGAA 58.472 45.455 0.00 0.00 42.66 3.85
2371 2596 2.377628 TTTCACGGAGCGCAAGGAGT 62.378 55.000 11.47 0.00 38.28 3.85
2372 2597 2.357517 CACGGAGCGCAAGGAGTT 60.358 61.111 11.47 0.00 38.28 3.01
2431 2656 3.624861 CGGGATATGCAGGATTATGAAGC 59.375 47.826 0.00 0.00 0.00 3.86
2432 2657 3.624861 GGGATATGCAGGATTATGAAGCG 59.375 47.826 0.00 0.00 0.00 4.68
2433 2658 3.624861 GGATATGCAGGATTATGAAGCGG 59.375 47.826 0.00 0.00 0.00 5.52
2436 2661 0.861837 GCAGGATTATGAAGCGGTCG 59.138 55.000 0.00 0.00 0.00 4.79
2439 2664 2.797156 CAGGATTATGAAGCGGTCGAAG 59.203 50.000 0.00 0.00 0.00 3.79
2468 2693 0.771127 CAGAGTTTCCCCACCTTGGA 59.229 55.000 0.00 0.00 40.96 3.53
2512 2737 0.951040 CGAGTTCAGGAACCAGCCAC 60.951 60.000 8.47 0.00 42.06 5.01
2523 2748 3.054503 CAGCCACTGCAGCCAGAC 61.055 66.667 15.27 0.00 41.77 3.51
2556 2781 6.967199 AGTTCAAATTTATCGCCGAATTTCTC 59.033 34.615 0.00 0.00 34.25 2.87
2604 2829 1.450360 AGGAAGGGGCAGAGTTTCTT 58.550 50.000 0.00 0.00 0.00 2.52
2626 2851 3.553597 GGGATACGCAGAGTCTTCG 57.446 57.895 10.76 10.76 37.60 3.79
2640 2865 1.070108 GTCTTCGAGTTTGAAACGCCC 60.070 52.381 6.22 0.00 36.23 6.13
2649 2874 1.153353 TTGAAACGCCCGAGATTCAC 58.847 50.000 0.00 0.00 31.96 3.18
2662 2887 3.340552 GAGATTCACGACAGTACGTACG 58.659 50.000 19.49 15.01 44.76 3.67
2666 2891 1.660607 TCACGACAGTACGTACGGATC 59.339 52.381 28.72 20.42 44.76 3.36
2679 2904 1.032657 ACGGATCGAGTGCTGCTACT 61.033 55.000 0.00 2.70 0.00 2.57
2680 2905 0.945099 CGGATCGAGTGCTGCTACTA 59.055 55.000 0.00 0.00 0.00 1.82
2689 2914 4.675671 CGAGTGCTGCTACTAGTTTTAGCT 60.676 45.833 15.38 0.00 42.21 3.32
2690 2915 4.499183 AGTGCTGCTACTAGTTTTAGCTG 58.501 43.478 15.38 15.25 42.21 4.24
2693 2918 3.861840 CTGCTACTAGTTTTAGCTGCCA 58.138 45.455 15.38 0.00 42.21 4.92
2696 2921 3.619038 GCTACTAGTTTTAGCTGCCACTG 59.381 47.826 0.00 0.00 39.17 3.66
2697 2922 3.771577 ACTAGTTTTAGCTGCCACTGT 57.228 42.857 0.00 0.00 0.00 3.55
2698 2923 4.086706 ACTAGTTTTAGCTGCCACTGTT 57.913 40.909 0.00 0.00 0.00 3.16
2699 2924 5.223449 ACTAGTTTTAGCTGCCACTGTTA 57.777 39.130 0.00 0.00 0.00 2.41
2700 2925 5.617252 ACTAGTTTTAGCTGCCACTGTTAA 58.383 37.500 0.00 0.00 0.00 2.01
2701 2926 6.238648 ACTAGTTTTAGCTGCCACTGTTAAT 58.761 36.000 0.00 0.00 0.00 1.40
2702 2927 6.715264 ACTAGTTTTAGCTGCCACTGTTAATT 59.285 34.615 0.00 0.00 0.00 1.40
2705 2930 7.272244 AGTTTTAGCTGCCACTGTTAATTTTT 58.728 30.769 0.00 0.00 0.00 1.94
2706 2931 7.224557 AGTTTTAGCTGCCACTGTTAATTTTTG 59.775 33.333 0.00 0.00 0.00 2.44
2707 2932 3.993920 AGCTGCCACTGTTAATTTTTGG 58.006 40.909 0.00 0.00 0.00 3.28
2708 2933 3.640967 AGCTGCCACTGTTAATTTTTGGA 59.359 39.130 0.00 0.00 0.00 3.53
2709 2934 3.740832 GCTGCCACTGTTAATTTTTGGAC 59.259 43.478 0.00 0.00 0.00 4.02
2710 2935 4.306600 CTGCCACTGTTAATTTTTGGACC 58.693 43.478 0.00 0.00 0.00 4.46
2711 2936 3.070302 TGCCACTGTTAATTTTTGGACCC 59.930 43.478 0.00 0.00 0.00 4.46
2715 2940 4.038162 CACTGTTAATTTTTGGACCCCGAA 59.962 41.667 0.00 0.00 0.00 4.30
2716 2941 4.836175 ACTGTTAATTTTTGGACCCCGAAT 59.164 37.500 0.00 0.00 0.00 3.34
2717 2942 5.047590 ACTGTTAATTTTTGGACCCCGAATC 60.048 40.000 0.00 0.00 0.00 2.52
2718 2943 5.081032 TGTTAATTTTTGGACCCCGAATCT 58.919 37.500 0.00 0.00 0.00 2.40
2719 2944 5.047660 TGTTAATTTTTGGACCCCGAATCTG 60.048 40.000 0.00 0.00 0.00 2.90
2729 2954 1.417890 CCCCGAATCTGCCACTCTTAT 59.582 52.381 0.00 0.00 0.00 1.73
2731 2956 3.071023 CCCCGAATCTGCCACTCTTATTA 59.929 47.826 0.00 0.00 0.00 0.98
2800 3031 4.202631 ACCTAAAAATGCAGGGGACAAGTA 60.203 41.667 0.00 0.00 36.15 2.24
2976 4645 5.777732 GGATGATCTCCACCTATGTACTTCT 59.222 44.000 6.39 0.00 44.26 2.85
3010 4679 6.215121 CAAACAAACATGCCATCTCAACTTA 58.785 36.000 0.00 0.00 0.00 2.24
3028 4697 8.195617 TCAACTTACAAAAATGCCTGAAAAAG 57.804 30.769 0.00 0.00 0.00 2.27
3067 4736 5.954150 AGCCTTTCCATTCAATTATGTCACT 59.046 36.000 0.00 0.00 0.00 3.41
3141 4810 9.784531 AGTTTGAGTTAGCATGCATACTATAAT 57.215 29.630 21.98 7.45 0.00 1.28
3163 4832 4.508461 TCTGCATATTTATGTGCCATGC 57.492 40.909 8.66 0.00 43.23 4.06
3172 4841 9.511144 CATATTTATGTGCCATGCATATACAAG 57.489 33.333 0.00 0.00 41.06 3.16
3184 4853 6.232139 TGCATATACAAGCAAATCTCATCG 57.768 37.500 0.00 0.00 37.90 3.84
3224 4893 7.453393 TGAACCAATTGGATATCATCTACTCC 58.547 38.462 31.22 3.27 38.94 3.85
3226 4895 6.094302 ACCAATTGGATATCATCTACTCCCT 58.906 40.000 31.22 0.00 38.94 4.20
3227 4896 6.214412 ACCAATTGGATATCATCTACTCCCTC 59.786 42.308 31.22 0.00 38.94 4.30
3228 4897 6.352565 CCAATTGGATATCATCTACTCCCTCC 60.353 46.154 20.50 0.00 37.39 4.30
3229 4898 3.969553 TGGATATCATCTACTCCCTCCG 58.030 50.000 4.83 0.00 0.00 4.63
3230 4899 3.333980 TGGATATCATCTACTCCCTCCGT 59.666 47.826 4.83 0.00 0.00 4.69
3231 4900 3.949113 GGATATCATCTACTCCCTCCGTC 59.051 52.174 4.83 0.00 0.00 4.79
3232 4901 2.296073 ATCATCTACTCCCTCCGTCC 57.704 55.000 0.00 0.00 0.00 4.79
3233 4902 0.185416 TCATCTACTCCCTCCGTCCC 59.815 60.000 0.00 0.00 0.00 4.46
3235 4904 0.861155 ATCTACTCCCTCCGTCCCAT 59.139 55.000 0.00 0.00 0.00 4.00
3237 4906 1.854939 TCTACTCCCTCCGTCCCATAA 59.145 52.381 0.00 0.00 0.00 1.90
3238 4907 2.449730 TCTACTCCCTCCGTCCCATAAT 59.550 50.000 0.00 0.00 0.00 1.28
3240 4909 1.344087 ACTCCCTCCGTCCCATAATGT 60.344 52.381 0.00 0.00 0.00 2.71
3241 4910 2.090943 ACTCCCTCCGTCCCATAATGTA 60.091 50.000 0.00 0.00 0.00 2.29
3242 4911 2.969950 CTCCCTCCGTCCCATAATGTAA 59.030 50.000 0.00 0.00 0.00 2.41
3243 4912 2.969950 TCCCTCCGTCCCATAATGTAAG 59.030 50.000 0.00 0.00 0.00 2.34
3245 4914 3.244112 CCCTCCGTCCCATAATGTAAGAC 60.244 52.174 0.00 0.00 0.00 3.01
3248 4917 3.448301 TCCGTCCCATAATGTAAGACGTT 59.552 43.478 9.63 0.00 46.62 3.99
3249 4918 4.081531 TCCGTCCCATAATGTAAGACGTTT 60.082 41.667 9.63 0.00 46.62 3.60
3251 4920 5.122711 CCGTCCCATAATGTAAGACGTTTTT 59.877 40.000 9.63 0.00 46.62 1.94
3292 4961 7.012327 GCATGAGTAAAACTATGTATGCAGGAA 59.988 37.037 0.00 0.00 39.41 3.36
3359 5028 5.593010 CGGACTCCTTGATAACTAAAGAGG 58.407 45.833 0.00 0.00 0.00 3.69
3410 5079 0.257328 AGCTGAGGAGGTGAGATCGA 59.743 55.000 0.00 0.00 0.00 3.59
3459 5135 6.341316 TGGTTGAAGAGCAGATCATAGTAAC 58.659 40.000 0.00 0.00 0.00 2.50
3594 5542 0.109272 CACGTGCGCTCTTCTTCCTA 60.109 55.000 9.73 0.00 0.00 2.94
3648 5626 2.125912 CTGACGAGGCCCAAGTCG 60.126 66.667 10.33 10.33 42.04 4.18
3697 5676 4.758251 CGCCGGCATCAGGACACA 62.758 66.667 28.98 0.00 0.00 3.72
3748 5727 4.776322 TCGCCAAGGCCCATGTCG 62.776 66.667 5.34 0.04 37.98 4.35
3753 5732 2.672996 AAGGCCCATGTCGTGTGC 60.673 61.111 0.00 0.00 0.00 4.57
3874 5952 2.028190 CCATCTACCGGCTGCTCG 59.972 66.667 0.00 1.31 0.00 5.03
3875 5953 2.659897 CATCTACCGGCTGCTCGC 60.660 66.667 0.00 0.00 38.13 5.03
3909 5987 2.353357 TCACCATGGAGATCAATGCC 57.647 50.000 21.47 0.00 0.00 4.40
3996 6074 1.301558 CATGGAGATCAGCTCGGCC 60.302 63.158 0.00 0.00 44.91 6.13
4186 6264 0.588233 CTACGTGGCGCACTACTACG 60.588 60.000 10.83 11.92 40.30 3.51
4385 6463 3.055385 GTGAACTTCAGCCAGTACCCATA 60.055 47.826 0.00 0.00 0.00 2.74
4546 6633 0.597637 GGTGATGGCGATACTGGACG 60.598 60.000 0.00 0.00 0.00 4.79
4624 6711 1.202222 GGCAACAGAATGGCAAGATCG 60.202 52.381 0.00 0.00 44.66 3.69
4653 6743 0.681564 TCGAGGACTTCAGGGAGAGC 60.682 60.000 0.00 0.00 0.00 4.09
4691 6781 1.334869 GCAGGTCAACAAGTGGAACAG 59.665 52.381 0.00 0.00 41.80 3.16
4772 6862 1.006102 CGGACGGTGATCCTATGGC 60.006 63.158 0.00 0.00 36.52 4.40
4823 6913 3.087031 CAACCAGCATCTCCATTTGAGT 58.913 45.455 0.00 0.00 42.12 3.41
4853 6943 9.793259 ATATATATTACCTGTTTCACCCAGTTG 57.207 33.333 0.00 0.00 0.00 3.16
4909 6999 1.336755 ACCACAACTTGAATTCGTGCC 59.663 47.619 0.04 0.00 0.00 5.01
4918 7008 1.271325 TGAATTCGTGCCACATGACCT 60.271 47.619 0.00 0.00 0.00 3.85
4931 7021 5.491070 CCACATGACCTTCAGAATAAGACA 58.509 41.667 0.00 0.00 0.00 3.41
4960 7050 9.755804 TGTTGAATACATTTGCAACTCATTTTA 57.244 25.926 0.00 0.00 40.78 1.52
4972 7062 9.624697 TTGCAACTCATTTTAATGTCATAGTTC 57.375 29.630 0.00 2.05 37.65 3.01
5110 7207 8.872845 GTGTGAAATACCAATCATTTTGAATCC 58.127 33.333 0.00 0.00 0.00 3.01
5183 7280 5.763204 ACCATTGTGAAATAACTGAAGTCGT 59.237 36.000 0.00 0.00 0.00 4.34
5187 7284 8.682016 CATTGTGAAATAACTGAAGTCGTTTTC 58.318 33.333 0.00 0.00 0.00 2.29
5200 7297 7.414436 TGAAGTCGTTTTCTTAAATGTGGAAG 58.586 34.615 3.97 0.00 33.04 3.46
5201 7298 7.281324 TGAAGTCGTTTTCTTAAATGTGGAAGA 59.719 33.333 3.97 0.00 33.04 2.87
5329 7428 7.517614 TTCCTAACATAAATCAACAAGTGCA 57.482 32.000 0.00 0.00 0.00 4.57
5330 7429 7.517614 TCCTAACATAAATCAACAAGTGCAA 57.482 32.000 0.00 0.00 0.00 4.08
5332 7431 8.584157 TCCTAACATAAATCAACAAGTGCAAAT 58.416 29.630 0.00 0.00 0.00 2.32
5345 7444 5.466393 ACAAGTGCAAATAAATTCCTGCAAC 59.534 36.000 4.15 1.04 45.71 4.17
5371 7470 1.299648 CCGATCTTCCCTTGGCACA 59.700 57.895 0.00 0.00 0.00 4.57
5406 7505 2.497675 ACATGTCAGCTCGTAGAACCAT 59.502 45.455 0.00 0.00 34.09 3.55
5412 7511 5.127194 TGTCAGCTCGTAGAACCATTCTTAT 59.873 40.000 0.00 0.00 41.14 1.73
5413 7512 6.043411 GTCAGCTCGTAGAACCATTCTTATT 58.957 40.000 0.00 0.00 41.14 1.40
5415 7514 7.705325 GTCAGCTCGTAGAACCATTCTTATTAA 59.295 37.037 0.00 0.00 41.14 1.40
5438 7537 2.672961 TTCATCCAAGTACCAGAGCG 57.327 50.000 0.00 0.00 0.00 5.03
5439 7538 1.847328 TCATCCAAGTACCAGAGCGA 58.153 50.000 0.00 0.00 0.00 4.93
5466 7565 4.804108 CTGAAAGACTGAGTACTGACAGG 58.196 47.826 14.26 0.00 38.30 4.00
5468 7567 1.551452 AGACTGAGTACTGACAGGCC 58.449 55.000 12.65 0.00 42.49 5.19
5469 7568 1.076350 AGACTGAGTACTGACAGGCCT 59.924 52.381 12.65 0.00 42.49 5.19
5485 7584 1.972198 CCTGTCGGTCTTACCAGCA 59.028 57.895 0.00 0.00 38.47 4.41
5491 7590 2.399356 GGTCTTACCAGCAAGCGGC 61.399 63.158 0.00 0.00 45.30 6.53
5502 7601 1.070471 GCAAGCGGCGTTTACATTGG 61.070 55.000 9.06 0.00 0.00 3.16
5510 7609 4.496673 GCGGCGTTTACATTGGAAATATGA 60.497 41.667 9.37 0.00 0.00 2.15
5517 7616 8.548721 CGTTTACATTGGAAATATGACCTAGAC 58.451 37.037 0.00 0.00 0.00 2.59
5518 7617 8.548721 GTTTACATTGGAAATATGACCTAGACG 58.451 37.037 0.00 0.00 0.00 4.18
5527 7626 9.601217 GGAAATATGACCTAGACGCAATAATAT 57.399 33.333 0.00 0.00 0.00 1.28
5603 7702 6.808008 ACTTTTATGATCCTGGAATATGCG 57.192 37.500 0.00 0.00 0.00 4.73
5604 7703 6.533730 ACTTTTATGATCCTGGAATATGCGA 58.466 36.000 0.00 0.00 0.00 5.10
5605 7704 7.170965 ACTTTTATGATCCTGGAATATGCGAT 58.829 34.615 0.00 0.00 0.00 4.58
5606 7705 7.667219 ACTTTTATGATCCTGGAATATGCGATT 59.333 33.333 0.00 0.00 0.00 3.34
5607 7706 7.615582 TTTATGATCCTGGAATATGCGATTC 57.384 36.000 0.00 3.16 0.00 2.52
5608 7707 4.897509 TGATCCTGGAATATGCGATTCT 57.102 40.909 0.00 0.00 0.00 2.40
5609 7708 4.572909 TGATCCTGGAATATGCGATTCTG 58.427 43.478 0.00 5.08 0.00 3.02
5610 7709 4.040829 TGATCCTGGAATATGCGATTCTGT 59.959 41.667 0.00 0.00 0.00 3.41
5611 7710 3.732212 TCCTGGAATATGCGATTCTGTG 58.268 45.455 10.11 2.97 0.00 3.66
5612 7711 2.810274 CCTGGAATATGCGATTCTGTGG 59.190 50.000 10.11 6.99 0.00 4.17
5613 7712 3.494924 CCTGGAATATGCGATTCTGTGGA 60.495 47.826 10.11 0.00 0.00 4.02
5614 7713 4.129380 CTGGAATATGCGATTCTGTGGAA 58.871 43.478 10.11 0.00 35.78 3.53
5615 7714 4.522114 TGGAATATGCGATTCTGTGGAAA 58.478 39.130 10.11 0.00 34.90 3.13
5616 7715 4.946772 TGGAATATGCGATTCTGTGGAAAA 59.053 37.500 10.11 0.00 34.90 2.29
5617 7716 5.593909 TGGAATATGCGATTCTGTGGAAAAT 59.406 36.000 10.11 0.00 34.90 1.82
5618 7717 6.096705 TGGAATATGCGATTCTGTGGAAAATT 59.903 34.615 10.11 0.00 34.90 1.82
5619 7718 6.980397 GGAATATGCGATTCTGTGGAAAATTT 59.020 34.615 10.11 0.00 34.90 1.82
5620 7719 7.043192 GGAATATGCGATTCTGTGGAAAATTTG 60.043 37.037 10.11 0.00 34.90 2.32
5621 7720 4.582701 TGCGATTCTGTGGAAAATTTGT 57.417 36.364 0.00 0.00 34.90 2.83
5622 7721 5.697473 TGCGATTCTGTGGAAAATTTGTA 57.303 34.783 0.00 0.00 34.90 2.41
5623 7722 6.266168 TGCGATTCTGTGGAAAATTTGTAT 57.734 33.333 0.00 0.00 34.90 2.29
5624 7723 6.092092 TGCGATTCTGTGGAAAATTTGTATG 58.908 36.000 0.00 0.00 34.90 2.39
5625 7724 5.516339 GCGATTCTGTGGAAAATTTGTATGG 59.484 40.000 0.00 0.00 34.90 2.74
5626 7725 6.624861 GCGATTCTGTGGAAAATTTGTATGGA 60.625 38.462 0.00 0.00 34.90 3.41
5627 7726 6.747280 CGATTCTGTGGAAAATTTGTATGGAC 59.253 38.462 0.00 0.00 34.90 4.02
5628 7727 5.621197 TCTGTGGAAAATTTGTATGGACG 57.379 39.130 0.00 0.00 0.00 4.79
5629 7728 4.083003 TCTGTGGAAAATTTGTATGGACGC 60.083 41.667 0.00 0.00 0.00 5.19
5630 7729 3.168193 GTGGAAAATTTGTATGGACGCG 58.832 45.455 3.53 3.53 0.00 6.01
5631 7730 2.814919 TGGAAAATTTGTATGGACGCGT 59.185 40.909 13.85 13.85 0.00 6.01
5632 7731 3.168193 GGAAAATTTGTATGGACGCGTG 58.832 45.455 20.70 0.00 0.00 5.34
5633 7732 2.911819 AAATTTGTATGGACGCGTGG 57.088 45.000 20.70 0.00 0.00 4.94
5634 7733 2.102070 AATTTGTATGGACGCGTGGA 57.898 45.000 20.70 1.85 0.00 4.02
5635 7734 2.102070 ATTTGTATGGACGCGTGGAA 57.898 45.000 20.70 0.94 0.00 3.53
5636 7735 2.102070 TTTGTATGGACGCGTGGAAT 57.898 45.000 20.70 9.98 0.00 3.01
5637 7736 1.364721 TTGTATGGACGCGTGGAATG 58.635 50.000 20.70 0.00 0.00 2.67
5638 7737 0.533032 TGTATGGACGCGTGGAATGA 59.467 50.000 20.70 0.00 0.00 2.57
5639 7738 1.138069 TGTATGGACGCGTGGAATGAT 59.862 47.619 20.70 1.27 0.00 2.45
5640 7739 2.362717 TGTATGGACGCGTGGAATGATA 59.637 45.455 20.70 0.22 0.00 2.15
5641 7740 2.613026 ATGGACGCGTGGAATGATAA 57.387 45.000 20.70 0.00 0.00 1.75
5642 7741 2.388310 TGGACGCGTGGAATGATAAA 57.612 45.000 20.70 0.00 0.00 1.40
5643 7742 2.004017 TGGACGCGTGGAATGATAAAC 58.996 47.619 20.70 0.00 0.00 2.01
5644 7743 2.004017 GGACGCGTGGAATGATAAACA 58.996 47.619 20.70 0.00 0.00 2.83
5645 7744 2.417239 GGACGCGTGGAATGATAAACAA 59.583 45.455 20.70 0.00 0.00 2.83
5646 7745 3.064820 GGACGCGTGGAATGATAAACAAT 59.935 43.478 20.70 0.00 0.00 2.71
5647 7746 4.271533 GGACGCGTGGAATGATAAACAATA 59.728 41.667 20.70 0.00 0.00 1.90
5648 7747 5.220700 GGACGCGTGGAATGATAAACAATAA 60.221 40.000 20.70 0.00 0.00 1.40
5649 7748 6.184580 ACGCGTGGAATGATAAACAATAAA 57.815 33.333 12.93 0.00 0.00 1.40
5650 7749 6.613233 ACGCGTGGAATGATAAACAATAAAA 58.387 32.000 12.93 0.00 0.00 1.52
5651 7750 7.254852 ACGCGTGGAATGATAAACAATAAAAT 58.745 30.769 12.93 0.00 0.00 1.82
5652 7751 7.757624 ACGCGTGGAATGATAAACAATAAAATT 59.242 29.630 12.93 0.00 0.00 1.82
5653 7752 9.227490 CGCGTGGAATGATAAACAATAAAATTA 57.773 29.630 0.00 0.00 0.00 1.40
5665 7764 8.721133 AAACAATAAAATTAGGTTCCCAGTCT 57.279 30.769 0.00 0.00 0.00 3.24
5666 7765 8.721133 AACAATAAAATTAGGTTCCCAGTCTT 57.279 30.769 0.00 0.00 0.00 3.01
5667 7766 8.349568 ACAATAAAATTAGGTTCCCAGTCTTC 57.650 34.615 0.00 0.00 0.00 2.87
5668 7767 7.396339 ACAATAAAATTAGGTTCCCAGTCTTCC 59.604 37.037 0.00 0.00 0.00 3.46
5669 7768 3.629142 AATTAGGTTCCCAGTCTTCCG 57.371 47.619 0.00 0.00 0.00 4.30
5670 7769 1.272807 TTAGGTTCCCAGTCTTCCGG 58.727 55.000 0.00 0.00 0.00 5.14
5671 7770 1.262640 TAGGTTCCCAGTCTTCCGGC 61.263 60.000 0.00 0.00 0.00 6.13
5672 7771 2.593956 GGTTCCCAGTCTTCCGGCT 61.594 63.158 0.00 0.00 0.00 5.52
5673 7772 1.262640 GGTTCCCAGTCTTCCGGCTA 61.263 60.000 0.00 0.00 0.00 3.93
5674 7773 0.611714 GTTCCCAGTCTTCCGGCTAA 59.388 55.000 0.00 0.00 0.00 3.09
5675 7774 0.902531 TTCCCAGTCTTCCGGCTAAG 59.097 55.000 0.00 0.00 0.00 2.18
5676 7775 0.040646 TCCCAGTCTTCCGGCTAAGA 59.959 55.000 0.00 0.00 33.10 2.10
5681 7780 3.834732 TCTTCCGGCTAAGACTTGC 57.165 52.632 0.00 0.00 30.54 4.01
5682 7781 1.267121 TCTTCCGGCTAAGACTTGCT 58.733 50.000 0.00 0.00 30.54 3.91
5683 7782 1.204941 TCTTCCGGCTAAGACTTGCTC 59.795 52.381 0.00 0.00 30.54 4.26
5684 7783 0.973632 TTCCGGCTAAGACTTGCTCA 59.026 50.000 0.00 0.00 0.00 4.26
5685 7784 0.973632 TCCGGCTAAGACTTGCTCAA 59.026 50.000 0.00 0.00 0.00 3.02
5686 7785 1.066858 TCCGGCTAAGACTTGCTCAAG 60.067 52.381 7.99 7.99 43.79 3.02
5697 7796 2.801063 CTTGCTCAAGTGTTGTTGGTG 58.199 47.619 1.61 0.00 33.87 4.17
5698 7797 2.121291 TGCTCAAGTGTTGTTGGTGA 57.879 45.000 0.00 0.00 0.00 4.02
5699 7798 2.653726 TGCTCAAGTGTTGTTGGTGAT 58.346 42.857 0.00 0.00 0.00 3.06
5700 7799 3.814625 TGCTCAAGTGTTGTTGGTGATA 58.185 40.909 0.00 0.00 0.00 2.15
5701 7800 4.203226 TGCTCAAGTGTTGTTGGTGATAA 58.797 39.130 0.00 0.00 0.00 1.75
5702 7801 4.036262 TGCTCAAGTGTTGTTGGTGATAAC 59.964 41.667 0.00 0.00 0.00 1.89
5703 7802 4.772434 CTCAAGTGTTGTTGGTGATAACG 58.228 43.478 0.00 0.00 32.53 3.18
5704 7803 4.193090 TCAAGTGTTGTTGGTGATAACGT 58.807 39.130 0.00 0.00 32.53 3.99
5705 7804 4.636648 TCAAGTGTTGTTGGTGATAACGTT 59.363 37.500 5.88 5.88 32.53 3.99
5706 7805 5.124138 TCAAGTGTTGTTGGTGATAACGTTT 59.876 36.000 5.91 0.00 32.53 3.60
5707 7806 5.570234 AGTGTTGTTGGTGATAACGTTTT 57.430 34.783 5.91 0.00 32.53 2.43
5708 7807 5.575019 AGTGTTGTTGGTGATAACGTTTTC 58.425 37.500 5.91 9.20 32.53 2.29
5709 7808 5.124138 AGTGTTGTTGGTGATAACGTTTTCA 59.876 36.000 16.12 16.12 32.53 2.69
5710 7809 5.454232 GTGTTGTTGGTGATAACGTTTTCAG 59.546 40.000 19.77 0.00 32.53 3.02
5711 7810 4.822036 TGTTGGTGATAACGTTTTCAGG 57.178 40.909 19.77 0.00 33.28 3.86
5712 7811 4.452825 TGTTGGTGATAACGTTTTCAGGA 58.547 39.130 19.77 8.26 33.28 3.86
5713 7812 5.067273 TGTTGGTGATAACGTTTTCAGGAT 58.933 37.500 19.77 0.01 33.28 3.24
5714 7813 5.049060 TGTTGGTGATAACGTTTTCAGGATG 60.049 40.000 19.77 0.00 33.28 3.51
5715 7814 4.647611 TGGTGATAACGTTTTCAGGATGT 58.352 39.130 19.77 0.00 37.40 3.06
5716 7815 5.067273 TGGTGATAACGTTTTCAGGATGTT 58.933 37.500 19.77 0.00 37.40 2.71
5717 7816 6.231951 TGGTGATAACGTTTTCAGGATGTTA 58.768 36.000 19.77 1.85 37.40 2.41
5718 7817 6.370442 TGGTGATAACGTTTTCAGGATGTTAG 59.630 38.462 19.77 0.00 37.40 2.34
5719 7818 6.183360 GGTGATAACGTTTTCAGGATGTTAGG 60.183 42.308 19.77 0.00 37.40 2.69
5720 7819 6.592607 GTGATAACGTTTTCAGGATGTTAGGA 59.407 38.462 19.77 0.00 37.40 2.94
5721 7820 7.280205 GTGATAACGTTTTCAGGATGTTAGGAT 59.720 37.037 19.77 0.00 37.40 3.24
5722 7821 8.479689 TGATAACGTTTTCAGGATGTTAGGATA 58.520 33.333 16.12 0.00 37.40 2.59
5723 7822 9.321562 GATAACGTTTTCAGGATGTTAGGATAA 57.678 33.333 5.91 0.00 37.40 1.75
5724 7823 9.847224 ATAACGTTTTCAGGATGTTAGGATAAT 57.153 29.630 5.91 0.00 37.40 1.28
5725 7824 7.553881 ACGTTTTCAGGATGTTAGGATAATG 57.446 36.000 0.00 0.00 37.40 1.90
5726 7825 7.110155 ACGTTTTCAGGATGTTAGGATAATGT 58.890 34.615 0.00 0.00 37.40 2.71
5727 7826 7.610305 ACGTTTTCAGGATGTTAGGATAATGTT 59.390 33.333 0.00 0.00 37.40 2.71
5728 7827 9.104965 CGTTTTCAGGATGTTAGGATAATGTTA 57.895 33.333 0.00 0.00 37.40 2.41
5732 7831 9.613428 TTCAGGATGTTAGGATAATGTTAAGTG 57.387 33.333 0.00 0.00 37.40 3.16
5733 7832 8.768397 TCAGGATGTTAGGATAATGTTAAGTGT 58.232 33.333 0.00 0.00 37.40 3.55
5758 7857 4.744570 CGATAGTCCTAAAGCAACACTGA 58.255 43.478 0.00 0.00 0.00 3.41
5759 7858 4.800993 CGATAGTCCTAAAGCAACACTGAG 59.199 45.833 0.00 0.00 0.00 3.35
5760 7859 5.393135 CGATAGTCCTAAAGCAACACTGAGA 60.393 44.000 0.00 0.00 0.00 3.27
5761 7860 4.264460 AGTCCTAAAGCAACACTGAGAG 57.736 45.455 0.00 0.00 0.00 3.20
5762 7861 3.643792 AGTCCTAAAGCAACACTGAGAGT 59.356 43.478 0.00 0.00 0.00 3.24
5763 7862 4.833380 AGTCCTAAAGCAACACTGAGAGTA 59.167 41.667 0.00 0.00 0.00 2.59
5764 7863 5.482175 AGTCCTAAAGCAACACTGAGAGTAT 59.518 40.000 0.00 0.00 0.00 2.12
5765 7864 5.578727 GTCCTAAAGCAACACTGAGAGTATG 59.421 44.000 0.00 0.00 0.00 2.39
5766 7865 5.246203 TCCTAAAGCAACACTGAGAGTATGT 59.754 40.000 0.00 0.00 0.00 2.29
5767 7866 6.436218 TCCTAAAGCAACACTGAGAGTATGTA 59.564 38.462 0.00 0.00 0.00 2.29
5768 7867 6.754209 CCTAAAGCAACACTGAGAGTATGTAG 59.246 42.308 0.00 0.00 0.00 2.74
5769 7868 5.730296 AAGCAACACTGAGAGTATGTAGT 57.270 39.130 0.00 0.00 0.00 2.73
5770 7869 5.730296 AGCAACACTGAGAGTATGTAGTT 57.270 39.130 0.00 0.00 0.00 2.24
5771 7870 6.835819 AGCAACACTGAGAGTATGTAGTTA 57.164 37.500 0.00 0.00 0.00 2.24
5772 7871 6.622549 AGCAACACTGAGAGTATGTAGTTAC 58.377 40.000 0.00 0.00 0.00 2.50
5773 7872 6.208797 AGCAACACTGAGAGTATGTAGTTACA 59.791 38.462 0.00 0.00 40.98 2.41
5774 7873 6.866770 GCAACACTGAGAGTATGTAGTTACAA 59.133 38.462 0.00 0.00 39.99 2.41
5775 7874 7.062371 GCAACACTGAGAGTATGTAGTTACAAG 59.938 40.741 0.00 0.00 39.99 3.16
5776 7875 7.997773 ACACTGAGAGTATGTAGTTACAAGA 57.002 36.000 0.00 0.00 39.99 3.02
5777 7876 8.405418 ACACTGAGAGTATGTAGTTACAAGAA 57.595 34.615 0.00 0.00 39.99 2.52
5778 7877 8.298140 ACACTGAGAGTATGTAGTTACAAGAAC 58.702 37.037 0.00 0.00 39.99 3.01
5779 7878 7.482113 CACTGAGAGTATGTAGTTACAAGAACG 59.518 40.741 0.00 0.00 39.99 3.95
5780 7879 7.389884 ACTGAGAGTATGTAGTTACAAGAACGA 59.610 37.037 0.00 0.00 39.99 3.85
5781 7880 8.277490 TGAGAGTATGTAGTTACAAGAACGAT 57.723 34.615 0.00 0.00 39.99 3.73
5782 7881 8.737175 TGAGAGTATGTAGTTACAAGAACGATT 58.263 33.333 0.00 0.00 39.99 3.34
5809 7908 6.642707 TTGAATCGACCCAAACTTATTTGT 57.357 33.333 0.00 0.00 43.23 2.83
5810 7909 6.642707 TGAATCGACCCAAACTTATTTGTT 57.357 33.333 0.00 0.00 43.23 2.83
5811 7910 7.747155 TGAATCGACCCAAACTTATTTGTTA 57.253 32.000 0.00 0.00 43.23 2.41
5812 7911 8.343168 TGAATCGACCCAAACTTATTTGTTAT 57.657 30.769 0.00 0.00 43.23 1.89
5813 7912 9.451002 TGAATCGACCCAAACTTATTTGTTATA 57.549 29.630 0.00 0.00 43.23 0.98
5814 7913 9.712359 GAATCGACCCAAACTTATTTGTTATAC 57.288 33.333 0.00 0.00 43.23 1.47
5815 7914 9.457436 AATCGACCCAAACTTATTTGTTATACT 57.543 29.630 0.00 0.00 43.23 2.12
5816 7915 8.851541 TCGACCCAAACTTATTTGTTATACTT 57.148 30.769 0.00 0.00 43.23 2.24
5817 7916 9.287373 TCGACCCAAACTTATTTGTTATACTTT 57.713 29.630 0.00 0.00 43.23 2.66
5818 7917 9.337091 CGACCCAAACTTATTTGTTATACTTTG 57.663 33.333 0.00 0.00 43.23 2.77
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 8.650143 ACATAAGCCTTTTGGAGATTTTAGAA 57.350 30.769 0.04 0.00 44.07 2.10
1 2 8.650143 AACATAAGCCTTTTGGAGATTTTAGA 57.350 30.769 0.04 0.00 44.07 2.10
11 12 5.399013 CGTTCCTAAACATAAGCCTTTTGG 58.601 41.667 0.04 0.00 37.71 3.28
12 13 5.182380 TCCGTTCCTAAACATAAGCCTTTTG 59.818 40.000 0.00 0.00 34.93 2.44
18 19 3.118519 TCCCTCCGTTCCTAAACATAAGC 60.119 47.826 0.00 0.00 34.93 3.09
97 98 5.231702 ACTGGACATTTCATTTTGGCAAT 57.768 34.783 0.00 0.00 0.00 3.56
151 153 1.138069 GAGAGCTTTCCTGGAGGCTAC 59.862 57.143 20.70 15.43 35.01 3.58
261 263 6.183360 GCTAGTTGGTCTGTATCAATGAGAGA 60.183 42.308 0.00 0.00 0.00 3.10
270 272 4.946478 ATGGAGCTAGTTGGTCTGTATC 57.054 45.455 3.86 0.00 42.40 2.24
273 275 2.906389 TGAATGGAGCTAGTTGGTCTGT 59.094 45.455 3.86 0.00 42.40 3.41
275 277 3.181471 CGATGAATGGAGCTAGTTGGTCT 60.181 47.826 3.86 0.00 42.40 3.85
279 281 1.869767 GCCGATGAATGGAGCTAGTTG 59.130 52.381 0.00 0.00 0.00 3.16
287 289 1.089481 GCTTGACGCCGATGAATGGA 61.089 55.000 0.00 0.00 0.00 3.41
358 360 3.636231 TTGGCGGGGTGTGAGAGG 61.636 66.667 0.00 0.00 0.00 3.69
370 372 2.108362 GGTCTATCCCCGTTGGCG 59.892 66.667 0.00 0.00 37.95 5.69
376 378 1.183030 TACCATGCGGTCTATCCCCG 61.183 60.000 0.00 0.00 44.71 5.73
506 508 4.345257 CCTATTATGGCCCTCGCAGTATAT 59.655 45.833 0.00 0.00 36.38 0.86
508 510 2.501723 CCTATTATGGCCCTCGCAGTAT 59.498 50.000 0.00 0.00 36.38 2.12
510 512 0.687354 CCTATTATGGCCCTCGCAGT 59.313 55.000 0.00 0.00 36.38 4.40
511 513 0.036010 CCCTATTATGGCCCTCGCAG 60.036 60.000 0.00 0.00 36.38 5.18
512 514 0.472925 TCCCTATTATGGCCCTCGCA 60.473 55.000 0.00 0.00 36.38 5.10
513 515 0.690762 TTCCCTATTATGGCCCTCGC 59.309 55.000 0.00 0.00 0.00 5.03
514 516 3.244911 ACAATTCCCTATTATGGCCCTCG 60.245 47.826 0.00 0.00 0.00 4.63
516 518 4.832560 AACAATTCCCTATTATGGCCCT 57.167 40.909 0.00 0.00 0.00 5.19
576 578 4.432712 GGAATGCATGTATGGTTCCAAAC 58.567 43.478 0.00 0.00 38.52 2.93
584 586 2.291465 CGACAAGGGAATGCATGTATGG 59.709 50.000 0.00 0.00 0.00 2.74
602 604 1.586154 CTTGGCATCCCCACAACGAC 61.586 60.000 0.00 0.00 45.34 4.34
692 725 2.094906 GTGAGTGCATGTACGTCCAGTA 60.095 50.000 8.36 0.00 0.00 2.74
714 747 0.388294 GGTCCGTGTGGCCTAGATAC 59.612 60.000 3.32 0.00 34.14 2.24
718 751 1.068741 GATAAGGTCCGTGTGGCCTAG 59.931 57.143 3.32 0.00 39.82 3.02
719 752 1.117150 GATAAGGTCCGTGTGGCCTA 58.883 55.000 3.32 0.00 39.82 3.93
720 753 1.905512 GATAAGGTCCGTGTGGCCT 59.094 57.895 3.32 0.00 41.69 5.19
721 754 1.520787 CGATAAGGTCCGTGTGGCC 60.521 63.158 0.00 0.00 34.14 5.36
722 755 0.104304 ATCGATAAGGTCCGTGTGGC 59.896 55.000 0.00 0.00 34.14 5.01
723 756 1.269621 GGATCGATAAGGTCCGTGTGG 60.270 57.143 0.00 0.00 40.92 4.17
724 757 2.135664 GGATCGATAAGGTCCGTGTG 57.864 55.000 0.00 0.00 40.92 3.82
729 762 2.030981 GTGTCTCGGATCGATAAGGTCC 60.031 54.545 0.00 0.00 46.86 4.46
730 763 2.617308 TGTGTCTCGGATCGATAAGGTC 59.383 50.000 0.00 0.00 34.61 3.85
731 764 2.358267 GTGTGTCTCGGATCGATAAGGT 59.642 50.000 0.00 0.00 34.61 3.50
732 765 2.357952 TGTGTGTCTCGGATCGATAAGG 59.642 50.000 0.00 0.00 34.61 2.69
773 806 8.350238 CACTCATGCAGCATATATATGTAGTC 57.650 38.462 21.10 7.16 36.11 2.59
799 832 4.413969 TCTTGCATTATTGTGTGCGAATG 58.586 39.130 0.00 0.00 44.11 2.67
800 833 4.700268 TCTTGCATTATTGTGTGCGAAT 57.300 36.364 0.00 0.00 44.11 3.34
801 834 4.700268 ATCTTGCATTATTGTGTGCGAA 57.300 36.364 0.00 0.00 44.11 4.70
802 835 4.875536 AGTATCTTGCATTATTGTGTGCGA 59.124 37.500 0.00 0.00 44.11 5.10
906 939 1.806496 ATGTAGCAGGGGAGCACATA 58.194 50.000 0.00 0.00 35.79 2.29
937 982 8.692710 TGTTGTATTTATAGAGATGGAAGACGT 58.307 33.333 0.00 0.00 0.00 4.34
941 986 8.725148 GGCATGTTGTATTTATAGAGATGGAAG 58.275 37.037 0.00 0.00 0.00 3.46
965 1010 1.200948 GTGCAAGAGATTGTGGAAGGC 59.799 52.381 0.00 0.00 0.00 4.35
972 1017 2.936919 TCTGGTGTGCAAGAGATTGT 57.063 45.000 0.00 0.00 0.00 2.71
975 1023 3.498774 ACTTTCTGGTGTGCAAGAGAT 57.501 42.857 0.00 0.00 0.00 2.75
978 1026 2.479837 CGTACTTTCTGGTGTGCAAGA 58.520 47.619 0.00 0.00 0.00 3.02
988 1036 5.741425 CATGATAACCATGCGTACTTTCTG 58.259 41.667 0.00 0.00 45.25 3.02
1018 1228 0.741221 CCTACGAGAGGCCTTGTTGC 60.741 60.000 6.77 0.00 38.96 4.17
1067 1277 3.737172 CCTTTGGAACCAGCGCCG 61.737 66.667 2.29 0.00 0.00 6.46
1070 1280 2.680913 CGAGCCTTTGGAACCAGCG 61.681 63.158 0.00 0.00 0.00 5.18
1104 1314 4.697756 TTTGAGGTGCGGCGAGGG 62.698 66.667 12.98 0.00 0.00 4.30
1105 1315 1.586154 ATTTTTGAGGTGCGGCGAGG 61.586 55.000 12.98 0.00 0.00 4.63
1123 1333 2.124403 GGTGCTGCTGCTGCCTAT 60.124 61.111 25.44 0.00 40.48 2.57
1136 1346 4.269523 TGGTGGTGGAGCTGGTGC 62.270 66.667 0.00 0.00 40.05 5.01
1144 1354 3.494254 GGTGGTGGTGGTGGTGGA 61.494 66.667 0.00 0.00 0.00 4.02
1146 1356 2.518349 GTGGTGGTGGTGGTGGTG 60.518 66.667 0.00 0.00 0.00 4.17
1160 1376 2.374184 TGGCTTCGGATAAATTGGTGG 58.626 47.619 0.00 0.00 0.00 4.61
1234 1450 4.504916 CCTCAGCTCGACGGCCTG 62.505 72.222 0.00 8.70 0.00 4.85
1248 1464 1.823169 TTACCGTCACAGTGGCCCTC 61.823 60.000 0.00 0.00 0.00 4.30
1293 1509 0.801251 GCGCCTGATCAAGCATATCC 59.199 55.000 16.30 0.00 0.00 2.59
1307 1523 0.598065 GTGGAAAACATCAAGCGCCT 59.402 50.000 2.29 0.00 0.00 5.52
1310 1526 4.083110 AGAGATTGTGGAAAACATCAAGCG 60.083 41.667 0.00 0.00 38.99 4.68
1312 1528 8.352201 TGTAAAGAGATTGTGGAAAACATCAAG 58.648 33.333 0.00 0.00 38.99 3.02
1314 1530 7.284261 TGTGTAAAGAGATTGTGGAAAACATCA 59.716 33.333 0.00 0.00 38.99 3.07
1319 1535 9.883142 AATTTTGTGTAAAGAGATTGTGGAAAA 57.117 25.926 0.00 0.00 0.00 2.29
1320 1536 9.311916 CAATTTTGTGTAAAGAGATTGTGGAAA 57.688 29.630 0.00 0.00 0.00 3.13
1330 1546 7.712797 AGGTACAACCAATTTTGTGTAAAGAG 58.287 34.615 5.88 0.00 41.95 2.85
1338 1554 3.252458 GCTCGAGGTACAACCAATTTTGT 59.748 43.478 15.58 1.41 41.95 2.83
1339 1555 3.502211 AGCTCGAGGTACAACCAATTTTG 59.498 43.478 16.99 0.00 41.95 2.44
1346 1562 0.243095 AACGAGCTCGAGGTACAACC 59.757 55.000 40.58 3.51 43.02 3.77
1404 1620 6.934645 AGAGAGAGAGATCACGTAATAGAAGG 59.065 42.308 0.00 0.00 0.00 3.46
1413 1629 3.706594 AGAGAGAGAGAGAGAGATCACGT 59.293 47.826 0.00 0.00 0.00 4.49
1415 1631 5.304101 AGAGAGAGAGAGAGAGAGAGATCAC 59.696 48.000 0.00 0.00 0.00 3.06
1418 1634 5.714863 AGAGAGAGAGAGAGAGAGAGAGAT 58.285 45.833 0.00 0.00 0.00 2.75
1464 1686 3.423907 CCAATACCTACAAACGCGTTCAC 60.424 47.826 26.77 0.00 0.00 3.18
1465 1687 2.737783 CCAATACCTACAAACGCGTTCA 59.262 45.455 26.77 12.54 0.00 3.18
1466 1688 2.738314 ACCAATACCTACAAACGCGTTC 59.262 45.455 26.77 0.00 0.00 3.95
1467 1689 2.481185 CACCAATACCTACAAACGCGTT 59.519 45.455 20.79 20.79 0.00 4.84
1468 1690 2.070783 CACCAATACCTACAAACGCGT 58.929 47.619 5.58 5.58 0.00 6.01
1469 1691 2.070783 ACACCAATACCTACAAACGCG 58.929 47.619 3.53 3.53 0.00 6.01
1470 1692 5.806366 AATACACCAATACCTACAAACGC 57.194 39.130 0.00 0.00 0.00 4.84
1471 1693 7.751793 GGAAAAATACACCAATACCTACAAACG 59.248 37.037 0.00 0.00 0.00 3.60
1472 1694 7.751793 CGGAAAAATACACCAATACCTACAAAC 59.248 37.037 0.00 0.00 0.00 2.93
1480 1702 7.838771 AGTCTACGGAAAAATACACCAATAC 57.161 36.000 0.00 0.00 0.00 1.89
1490 1712 6.894339 ATTTCACCAAGTCTACGGAAAAAT 57.106 33.333 0.00 0.00 0.00 1.82
1496 1718 6.961576 TGTTTAAATTTCACCAAGTCTACGG 58.038 36.000 0.00 0.00 0.00 4.02
1497 1719 8.126700 ACTTGTTTAAATTTCACCAAGTCTACG 58.873 33.333 17.07 0.00 38.40 3.51
1503 1725 6.701400 CCCTGACTTGTTTAAATTTCACCAAG 59.299 38.462 16.17 16.17 36.32 3.61
1509 1731 9.952188 GATATAGCCCTGACTTGTTTAAATTTC 57.048 33.333 0.00 0.00 0.00 2.17
1525 1747 3.455910 TGTTTCTGCACAGATATAGCCCT 59.544 43.478 0.31 0.00 37.29 5.19
1537 1759 1.202698 ACTCCTGTCCTGTTTCTGCAC 60.203 52.381 0.00 0.00 0.00 4.57
1553 1775 1.033574 CGGAGACTACATCCCACTCC 58.966 60.000 0.00 0.00 42.30 3.85
1584 1806 2.575993 CTCCAGGCTCCGTGAGTG 59.424 66.667 0.00 0.00 31.39 3.51
1590 1812 3.151022 GTCCTCCTCCAGGCTCCG 61.151 72.222 0.00 0.00 43.08 4.63
1602 1824 0.530744 TCGTACATGTGCCAGTCCTC 59.469 55.000 9.11 0.00 0.00 3.71
1606 1828 0.250234 AGCATCGTACATGTGCCAGT 59.750 50.000 9.11 0.00 39.62 4.00
1675 1897 3.430042 TCTCCGTGTAGTGGTAGTTCT 57.570 47.619 0.00 0.00 0.00 3.01
1682 1904 2.743636 ACAACATCTCCGTGTAGTGG 57.256 50.000 0.00 0.00 0.00 4.00
1696 1918 4.600111 AGACCTTAATGTCCCCTAACAACA 59.400 41.667 7.21 0.00 35.83 3.33
1697 1919 5.175388 AGACCTTAATGTCCCCTAACAAC 57.825 43.478 7.21 0.00 35.83 3.32
1698 1920 5.280830 GGAAGACCTTAATGTCCCCTAACAA 60.281 44.000 7.21 0.00 35.83 2.83
1700 1922 4.384978 GGGAAGACCTTAATGTCCCCTAAC 60.385 50.000 14.13 1.15 41.93 2.34
1701 1923 3.784202 GGGAAGACCTTAATGTCCCCTAA 59.216 47.826 14.13 0.00 41.93 2.69
1702 1924 3.246572 TGGGAAGACCTTAATGTCCCCTA 60.247 47.826 19.00 11.67 46.42 3.53
1703 1925 2.206223 GGGAAGACCTTAATGTCCCCT 58.794 52.381 14.13 0.00 41.93 4.79
1704 1926 1.920351 TGGGAAGACCTTAATGTCCCC 59.080 52.381 14.38 14.38 46.42 4.81
1706 1928 2.644676 GCTGGGAAGACCTTAATGTCC 58.355 52.381 7.21 0.00 41.11 4.02
1707 1929 2.644676 GGCTGGGAAGACCTTAATGTC 58.355 52.381 2.91 2.91 41.11 3.06
1708 1930 1.065418 CGGCTGGGAAGACCTTAATGT 60.065 52.381 0.00 0.00 41.11 2.71
1709 1931 1.668419 CGGCTGGGAAGACCTTAATG 58.332 55.000 0.00 0.00 41.11 1.90
1710 1932 0.546598 CCGGCTGGGAAGACCTTAAT 59.453 55.000 2.57 0.00 41.11 1.40
1711 1933 1.988015 CCGGCTGGGAAGACCTTAA 59.012 57.895 2.57 0.00 41.11 1.85
1712 1934 3.721868 CCGGCTGGGAAGACCTTA 58.278 61.111 2.57 0.00 41.11 2.69
1722 1944 2.685380 AGAGTTCTCCCCGGCTGG 60.685 66.667 3.88 3.88 0.00 4.85
1723 1945 2.581354 CAGAGTTCTCCCCGGCTG 59.419 66.667 0.00 0.00 0.00 4.85
1724 1946 2.685380 CCAGAGTTCTCCCCGGCT 60.685 66.667 0.00 0.00 0.00 5.52
1725 1947 3.787001 CCCAGAGTTCTCCCCGGC 61.787 72.222 0.00 0.00 0.00 6.13
1726 1948 2.284699 ACCCAGAGTTCTCCCCGG 60.285 66.667 0.00 0.00 0.00 5.73
1727 1949 2.711922 CGACCCAGAGTTCTCCCCG 61.712 68.421 0.00 0.00 0.00 5.73
1728 1950 1.605971 GACGACCCAGAGTTCTCCCC 61.606 65.000 0.00 0.00 0.00 4.81
1729 1951 1.605971 GGACGACCCAGAGTTCTCCC 61.606 65.000 0.00 0.00 34.14 4.30
1730 1952 1.891616 GGACGACCCAGAGTTCTCC 59.108 63.158 0.00 0.00 34.14 3.71
1731 1953 1.507174 CGGACGACCCAGAGTTCTC 59.493 63.158 0.00 0.00 34.14 2.87
1732 1954 2.637383 GCGGACGACCCAGAGTTCT 61.637 63.158 0.00 0.00 34.14 3.01
1733 1955 2.126031 GCGGACGACCCAGAGTTC 60.126 66.667 0.00 0.00 34.14 3.01
1734 1956 3.692406 GGCGGACGACCCAGAGTT 61.692 66.667 0.00 0.00 34.14 3.01
1781 2003 0.321653 GGCTGTACTGTGAGGGGTTG 60.322 60.000 1.46 0.00 0.00 3.77
1793 2015 2.000447 CTACGCTTTTCAGGGCTGTAC 59.000 52.381 0.00 0.00 36.39 2.90
1827 2049 1.892209 AATGAACACCAACCGACCTC 58.108 50.000 0.00 0.00 0.00 3.85
1857 2079 6.882140 TGTATTTGTGAAGTAAATCCGGTCAT 59.118 34.615 0.00 0.00 0.00 3.06
1862 2084 7.129109 AGTGTGTATTTGTGAAGTAAATCCG 57.871 36.000 0.00 0.00 0.00 4.18
1873 2095 7.400599 TCCTACCTAGTAGTGTGTATTTGTG 57.599 40.000 0.00 0.00 34.62 3.33
1875 2097 6.979238 GCTTCCTACCTAGTAGTGTGTATTTG 59.021 42.308 0.00 0.00 34.62 2.32
1879 2101 5.183530 TGCTTCCTACCTAGTAGTGTGTA 57.816 43.478 0.00 0.00 34.62 2.90
1891 2113 1.326548 CGCACGTATTTGCTTCCTACC 59.673 52.381 0.00 0.00 40.62 3.18
1918 2140 7.639945 CATGTAAATGGTAAGGTAAGCTAAGC 58.360 38.462 0.00 0.00 0.00 3.09
1930 2152 1.746220 GCACCCGCATGTAAATGGTAA 59.254 47.619 0.00 0.00 38.36 2.85
1931 2153 1.384525 GCACCCGCATGTAAATGGTA 58.615 50.000 0.00 0.00 38.36 3.25
1932 2154 1.319614 GGCACCCGCATGTAAATGGT 61.320 55.000 0.00 0.00 41.24 3.55
1933 2155 1.437160 GGCACCCGCATGTAAATGG 59.563 57.895 0.00 0.00 41.24 3.16
1934 2156 1.063972 CGGCACCCGCATGTAAATG 59.936 57.895 0.00 0.00 41.17 2.32
1961 2183 2.694760 GCGACGGGAGGTACGAGTT 61.695 63.158 0.00 0.00 34.93 3.01
2111 2336 2.545742 GCCGATTGGTGCTTTTGTCTTT 60.546 45.455 0.00 0.00 37.67 2.52
2188 2413 0.447801 CTGTACATTTCCGGCAGTGC 59.552 55.000 6.55 6.55 0.00 4.40
2216 2441 1.540580 GGCTTCGAGGGGCAGTAATAC 60.541 57.143 8.67 0.00 0.00 1.89
2219 2444 2.987125 GGCTTCGAGGGGCAGTAA 59.013 61.111 8.67 0.00 0.00 2.24
2220 2445 3.458163 CGGCTTCGAGGGGCAGTA 61.458 66.667 12.77 0.00 35.61 2.74
2230 2455 2.673114 TAAAGCGGTTGCGGCTTCG 61.673 57.895 12.92 3.74 46.45 3.79
2231 2456 1.154282 GTAAAGCGGTTGCGGCTTC 60.154 57.895 12.92 0.80 46.45 3.86
2275 2500 3.733337 ACGGATCTGCACAATAGATTCC 58.267 45.455 0.00 0.00 35.14 3.01
2276 2501 4.572389 ACAACGGATCTGCACAATAGATTC 59.428 41.667 0.00 0.00 35.14 2.52
2282 2507 1.078709 CGACAACGGATCTGCACAAT 58.921 50.000 0.00 0.00 35.72 2.71
2283 2508 2.527671 CGACAACGGATCTGCACAA 58.472 52.632 0.00 0.00 35.72 3.33
2349 2574 0.240945 CCTTGCGCTCCGTGAAATTT 59.759 50.000 9.73 0.00 0.00 1.82
2431 2656 1.805945 GGCTACTGTGCTTCGACCG 60.806 63.158 0.00 0.00 0.00 4.79
2432 2657 0.737715 CTGGCTACTGTGCTTCGACC 60.738 60.000 0.00 0.00 0.00 4.79
2433 2658 0.243907 TCTGGCTACTGTGCTTCGAC 59.756 55.000 0.00 0.00 0.00 4.20
2436 2661 2.464157 AACTCTGGCTACTGTGCTTC 57.536 50.000 0.00 0.00 0.00 3.86
2439 2664 1.443802 GGAAACTCTGGCTACTGTGC 58.556 55.000 0.00 0.00 0.00 4.57
2468 2693 1.578583 GTACATCGCGTTAATGGCCT 58.421 50.000 5.77 0.00 0.00 5.19
2512 2737 3.535629 TTCCACCGTCTGGCTGCAG 62.536 63.158 10.11 10.11 40.39 4.41
2523 2748 4.557301 GCGATAAATTTGAACTTTCCACCG 59.443 41.667 0.00 0.00 0.00 4.94
2556 2781 2.888863 AGAAGCGCCTCCTTCTCG 59.111 61.111 2.29 0.00 46.40 4.04
2604 2829 0.259065 AGACTCTGCGTATCCCCTCA 59.741 55.000 0.00 0.00 0.00 3.86
2626 2851 1.439679 ATCTCGGGCGTTTCAAACTC 58.560 50.000 0.00 0.00 0.00 3.01
2640 2865 2.522372 ACGTACTGTCGTGAATCTCG 57.478 50.000 0.00 0.00 42.56 4.04
2649 2874 0.923403 TCGATCCGTACGTACTGTCG 59.077 55.000 25.17 25.17 0.00 4.35
2662 2887 1.950909 ACTAGTAGCAGCACTCGATCC 59.049 52.381 0.00 0.00 0.00 3.36
2666 2891 3.548268 GCTAAAACTAGTAGCAGCACTCG 59.452 47.826 10.62 0.00 42.93 4.18
2679 2904 7.519032 AAATTAACAGTGGCAGCTAAAACTA 57.481 32.000 0.00 0.00 0.00 2.24
2680 2905 6.405278 AAATTAACAGTGGCAGCTAAAACT 57.595 33.333 0.00 0.00 0.00 2.66
2689 2914 3.070302 GGGTCCAAAAATTAACAGTGGCA 59.930 43.478 0.00 0.00 0.00 4.92
2690 2915 3.556213 GGGGTCCAAAAATTAACAGTGGC 60.556 47.826 0.00 0.00 0.00 5.01
2691 2916 3.305744 CGGGGTCCAAAAATTAACAGTGG 60.306 47.826 0.00 0.00 0.00 4.00
2692 2917 3.570550 TCGGGGTCCAAAAATTAACAGTG 59.429 43.478 0.00 0.00 0.00 3.66
2693 2918 3.834938 TCGGGGTCCAAAAATTAACAGT 58.165 40.909 0.00 0.00 0.00 3.55
2696 2921 5.407502 CAGATTCGGGGTCCAAAAATTAAC 58.592 41.667 0.00 0.00 0.00 2.01
2697 2922 4.081917 GCAGATTCGGGGTCCAAAAATTAA 60.082 41.667 0.00 0.00 0.00 1.40
2698 2923 3.445805 GCAGATTCGGGGTCCAAAAATTA 59.554 43.478 0.00 0.00 0.00 1.40
2699 2924 2.233676 GCAGATTCGGGGTCCAAAAATT 59.766 45.455 0.00 0.00 0.00 1.82
2700 2925 1.824852 GCAGATTCGGGGTCCAAAAAT 59.175 47.619 0.00 0.00 0.00 1.82
2701 2926 1.253100 GCAGATTCGGGGTCCAAAAA 58.747 50.000 0.00 0.00 0.00 1.94
2702 2927 0.610785 GGCAGATTCGGGGTCCAAAA 60.611 55.000 0.00 0.00 0.00 2.44
2705 2930 2.609299 TGGCAGATTCGGGGTCCA 60.609 61.111 0.00 0.00 0.00 4.02
2706 2931 2.124695 GTGGCAGATTCGGGGTCC 60.125 66.667 0.00 0.00 0.00 4.46
2707 2932 1.153349 GAGTGGCAGATTCGGGGTC 60.153 63.158 0.00 0.00 0.00 4.46
2708 2933 1.201429 AAGAGTGGCAGATTCGGGGT 61.201 55.000 0.00 0.00 0.00 4.95
2709 2934 0.830648 TAAGAGTGGCAGATTCGGGG 59.169 55.000 0.00 0.00 0.00 5.73
2710 2935 2.918712 ATAAGAGTGGCAGATTCGGG 57.081 50.000 0.00 0.00 0.00 5.14
2711 2936 6.867662 AATTAATAAGAGTGGCAGATTCGG 57.132 37.500 0.00 0.00 0.00 4.30
2715 2940 6.604795 AGCACAAATTAATAAGAGTGGCAGAT 59.395 34.615 0.00 0.00 0.00 2.90
2716 2941 5.945784 AGCACAAATTAATAAGAGTGGCAGA 59.054 36.000 0.00 0.00 0.00 4.26
2717 2942 6.127925 TGAGCACAAATTAATAAGAGTGGCAG 60.128 38.462 0.00 0.00 0.00 4.85
2718 2943 5.709631 TGAGCACAAATTAATAAGAGTGGCA 59.290 36.000 9.87 0.00 0.00 4.92
2719 2944 6.030228 GTGAGCACAAATTAATAAGAGTGGC 58.970 40.000 9.87 0.00 0.00 5.01
2766 2993 5.242434 TGCATTTTTAGGTCGTGTGAGTAT 58.758 37.500 0.00 0.00 0.00 2.12
2779 3006 5.679638 GCATACTTGTCCCCTGCATTTTTAG 60.680 44.000 0.00 0.00 33.13 1.85
2782 3009 2.497273 GCATACTTGTCCCCTGCATTTT 59.503 45.455 0.00 0.00 33.13 1.82
2800 3031 1.066573 CCTCGTCTCTGAACCAAGCAT 60.067 52.381 0.00 0.00 0.00 3.79
2931 3162 4.341235 TCCACTTAGAGAATACGGTGATGG 59.659 45.833 0.00 0.00 0.00 3.51
2972 4641 4.173256 GTTTGTTTGGGTGTTGACAGAAG 58.827 43.478 0.00 0.00 0.00 2.85
2976 4645 3.854666 CATGTTTGTTTGGGTGTTGACA 58.145 40.909 0.00 0.00 0.00 3.58
3010 4679 4.129380 GGAGCTTTTTCAGGCATTTTTGT 58.871 39.130 0.00 0.00 0.00 2.83
3028 4697 4.037327 GGAAAGGCTTTTATCATGAGGAGC 59.963 45.833 14.66 7.60 0.00 4.70
3104 4773 7.333528 TGCTAACTCAAACTGAAAAAGACAT 57.666 32.000 0.00 0.00 0.00 3.06
3141 4810 4.341520 TGCATGGCACATAAATATGCAGAA 59.658 37.500 4.18 0.00 46.31 3.02
3143 4812 4.245845 TGCATGGCACATAAATATGCAG 57.754 40.909 4.18 0.00 46.31 4.41
3157 4826 5.130292 AGATTTGCTTGTATATGCATGGC 57.870 39.130 10.16 9.62 36.91 4.40
3162 4831 6.471976 TCGATGAGATTTGCTTGTATATGC 57.528 37.500 0.00 0.00 0.00 3.14
3163 4832 8.715088 TCATTCGATGAGATTTGCTTGTATATG 58.285 33.333 0.00 0.00 33.59 1.78
3164 4833 8.837788 TCATTCGATGAGATTTGCTTGTATAT 57.162 30.769 0.00 0.00 33.59 0.86
3209 4878 3.949113 GACGGAGGGAGTAGATGATATCC 59.051 52.174 0.00 0.00 0.00 2.59
3221 4890 1.424638 ACATTATGGGACGGAGGGAG 58.575 55.000 0.00 0.00 0.00 4.30
3222 4891 2.779429 TACATTATGGGACGGAGGGA 57.221 50.000 0.00 0.00 0.00 4.20
3223 4892 2.969950 TCTTACATTATGGGACGGAGGG 59.030 50.000 0.00 0.00 0.00 4.30
3224 4893 3.552273 CGTCTTACATTATGGGACGGAGG 60.552 52.174 20.50 5.87 43.69 4.30
3226 4895 3.720949 CGTCTTACATTATGGGACGGA 57.279 47.619 20.50 2.30 43.69 4.69
3252 4921 9.529325 GTTTTACTCATGCATACTATAGTGTCA 57.471 33.333 15.90 10.22 0.00 3.58
3253 4922 9.751542 AGTTTTACTCATGCATACTATAGTGTC 57.248 33.333 15.90 4.98 0.00 3.67
3261 4930 8.993121 GCATACATAGTTTTACTCATGCATACT 58.007 33.333 0.00 0.00 37.92 2.12
3262 4931 8.773645 TGCATACATAGTTTTACTCATGCATAC 58.226 33.333 0.00 0.00 41.71 2.39
3263 4932 8.900983 TGCATACATAGTTTTACTCATGCATA 57.099 30.769 0.00 0.00 41.71 3.14
3292 4961 0.964358 GCTTGCTCACCAGAGGCAAT 60.964 55.000 0.00 0.00 42.33 3.56
3359 5028 3.063180 CCGTTGATCTGCTCTTCAATCAC 59.937 47.826 0.00 0.00 34.60 3.06
3459 5135 0.874175 CGGCCTGCATGCATCAATTG 60.874 55.000 22.97 8.20 0.00 2.32
3697 5676 2.361610 CCCGGTGATGCTGGCTTT 60.362 61.111 0.00 0.00 42.42 3.51
3753 5732 0.103208 GATGGTAGCCAGTGTCGAGG 59.897 60.000 0.00 0.00 36.75 4.63
3786 5765 0.546122 AACAGTGTGTCCTGAGCCAA 59.454 50.000 0.00 0.00 36.30 4.52
3843 5921 0.695462 AGATGGGGTGCATCTGGCTA 60.695 55.000 0.00 0.00 45.15 3.93
4161 6239 3.445687 TGCGCCACGTAGTCGGAT 61.446 61.111 4.18 0.00 41.61 4.18
4293 6371 1.005748 CAAGCTCTCGTGGCAGTCA 60.006 57.895 0.00 0.00 0.00 3.41
4356 6434 2.664851 CTGAAGTTCACGGCGGCA 60.665 61.111 13.24 0.00 0.00 5.69
4407 6485 2.124507 TTATGCGGGCTATGGAGGGC 62.125 60.000 0.00 0.00 0.00 5.19
4546 6633 2.098680 CGAGTGCGACGAGAGGAC 59.901 66.667 0.00 0.00 40.82 3.85
4624 6711 0.319641 AAGTCCTCGAACGCCTTGTC 60.320 55.000 0.00 0.00 0.00 3.18
4653 6743 0.734889 GCACCCCGATCTTCAACATG 59.265 55.000 0.00 0.00 0.00 3.21
4691 6781 3.556298 TTTTTCCGCTCGGGGTCCC 62.556 63.158 8.59 0.00 36.01 4.46
4837 6927 2.958355 ACATTCAACTGGGTGAAACAGG 59.042 45.455 5.14 0.00 40.76 4.00
4885 6975 4.261031 GCACGAATTCAAGTTGTGGTACTT 60.261 41.667 7.33 0.00 38.87 2.24
4887 6977 3.551551 GCACGAATTCAAGTTGTGGTAC 58.448 45.455 7.33 0.00 0.00 3.34
4899 6989 1.453155 AGGTCATGTGGCACGAATTC 58.547 50.000 13.77 0.00 0.00 2.17
4904 6994 0.320683 TCTGAAGGTCATGTGGCACG 60.321 55.000 13.77 0.00 0.00 5.34
4909 6999 7.439157 TTTGTCTTATTCTGAAGGTCATGTG 57.561 36.000 0.00 0.00 0.00 3.21
4948 7038 8.243426 TGGAACTATGACATTAAAATGAGTTGC 58.757 33.333 9.60 12.51 37.84 4.17
5020 7111 8.496707 AGCAAACAATGATTTGGATTATTTCC 57.503 30.769 9.21 0.00 45.69 3.13
5081 7178 9.605275 TTCAAAATGATTGGTATTTCACACAAA 57.395 25.926 0.00 0.00 0.00 2.83
5084 7181 8.872845 GGATTCAAAATGATTGGTATTTCACAC 58.127 33.333 0.00 0.00 0.00 3.82
5095 7192 8.733458 TCACTAGAGTTGGATTCAAAATGATTG 58.267 33.333 0.00 0.00 34.28 2.67
5104 7201 9.958180 TCAATTATTTCACTAGAGTTGGATTCA 57.042 29.630 0.00 0.00 0.00 2.57
5314 7413 9.995003 AGGAATTTATTTGCACTTGTTGATTTA 57.005 25.926 0.00 0.00 0.00 1.40
5319 7418 5.466058 TGCAGGAATTTATTTGCACTTGTTG 59.534 36.000 0.00 0.00 41.23 3.33
5345 7444 4.918201 GGAAGATCGGCGCCCCTG 62.918 72.222 23.46 7.26 0.00 4.45
5355 7454 2.206576 AGTTGTGCCAAGGGAAGATC 57.793 50.000 0.00 0.00 0.00 2.75
5356 7455 3.806949 TTAGTTGTGCCAAGGGAAGAT 57.193 42.857 0.00 0.00 0.00 2.40
5363 7462 8.649841 CATGTCAAAATTATTAGTTGTGCCAAG 58.350 33.333 0.00 0.00 0.00 3.61
5371 7470 8.177663 CGAGCTGACATGTCAAAATTATTAGTT 58.822 33.333 27.63 11.77 39.39 2.24
5372 7471 7.334421 ACGAGCTGACATGTCAAAATTATTAGT 59.666 33.333 27.63 14.96 39.39 2.24
5374 7473 7.609760 ACGAGCTGACATGTCAAAATTATTA 57.390 32.000 27.63 3.40 39.39 0.98
5375 7474 6.500684 ACGAGCTGACATGTCAAAATTATT 57.499 33.333 27.63 9.45 39.39 1.40
5378 7477 5.237815 TCTACGAGCTGACATGTCAAAATT 58.762 37.500 27.63 14.01 39.39 1.82
5388 7487 2.826128 AGAATGGTTCTACGAGCTGACA 59.174 45.455 0.00 0.00 38.49 3.58
5412 7511 6.823689 GCTCTGGTACTTGGATGAAAGATTAA 59.176 38.462 0.00 0.00 0.00 1.40
5413 7512 6.349300 GCTCTGGTACTTGGATGAAAGATTA 58.651 40.000 0.00 0.00 0.00 1.75
5415 7514 4.681781 CGCTCTGGTACTTGGATGAAAGAT 60.682 45.833 0.00 0.00 0.00 2.40
5423 7522 1.204704 CATGTCGCTCTGGTACTTGGA 59.795 52.381 0.00 0.00 0.00 3.53
5438 7537 4.624882 CAGTACTCAGTCTTTCAGCATGTC 59.375 45.833 0.00 0.00 37.40 3.06
5439 7538 4.281941 TCAGTACTCAGTCTTTCAGCATGT 59.718 41.667 0.00 0.00 37.40 3.21
5466 7565 1.448013 GCTGGTAAGACCGACAGGC 60.448 63.158 0.00 0.00 42.58 4.85
5468 7567 1.714794 CTTGCTGGTAAGACCGACAG 58.285 55.000 0.00 0.00 42.58 3.51
5469 7568 0.320421 GCTTGCTGGTAAGACCGACA 60.320 55.000 2.77 0.00 42.58 4.35
5472 7571 2.100631 CCGCTTGCTGGTAAGACCG 61.101 63.158 2.77 0.00 42.58 4.79
5473 7572 2.399356 GCCGCTTGCTGGTAAGACC 61.399 63.158 2.77 0.00 39.22 3.85
5485 7584 1.240256 TTCCAATGTAAACGCCGCTT 58.760 45.000 0.00 0.00 0.00 4.68
5491 7590 8.548721 GTCTAGGTCATATTTCCAATGTAAACG 58.451 37.037 0.00 0.00 0.00 3.60
5497 7596 5.056480 TGCGTCTAGGTCATATTTCCAATG 58.944 41.667 0.00 0.00 0.00 2.82
5498 7597 5.290493 TGCGTCTAGGTCATATTTCCAAT 57.710 39.130 0.00 0.00 0.00 3.16
5581 7680 7.621428 ATCGCATATTCCAGGATCATAAAAG 57.379 36.000 0.00 0.00 0.00 2.27
5583 7682 7.335171 CAGAATCGCATATTCCAGGATCATAAA 59.665 37.037 0.00 0.00 0.00 1.40
5588 7687 4.391216 CACAGAATCGCATATTCCAGGATC 59.609 45.833 0.00 0.00 0.00 3.36
5591 7690 2.810274 CCACAGAATCGCATATTCCAGG 59.190 50.000 5.40 2.64 0.00 4.45
5592 7691 3.732212 TCCACAGAATCGCATATTCCAG 58.268 45.455 5.40 2.53 0.00 3.86
5593 7692 3.836365 TCCACAGAATCGCATATTCCA 57.164 42.857 5.40 0.00 0.00 3.53
5594 7693 5.499139 TTTTCCACAGAATCGCATATTCC 57.501 39.130 5.40 0.00 0.00 3.01
5595 7694 7.489113 ACAAATTTTCCACAGAATCGCATATTC 59.511 33.333 1.40 1.40 0.00 1.75
5596 7695 7.322664 ACAAATTTTCCACAGAATCGCATATT 58.677 30.769 0.00 0.00 0.00 1.28
5597 7696 6.866480 ACAAATTTTCCACAGAATCGCATAT 58.134 32.000 0.00 0.00 0.00 1.78
5598 7697 6.266168 ACAAATTTTCCACAGAATCGCATA 57.734 33.333 0.00 0.00 0.00 3.14
5599 7698 5.138125 ACAAATTTTCCACAGAATCGCAT 57.862 34.783 0.00 0.00 0.00 4.73
5600 7699 4.582701 ACAAATTTTCCACAGAATCGCA 57.417 36.364 0.00 0.00 0.00 5.10
5601 7700 5.516339 CCATACAAATTTTCCACAGAATCGC 59.484 40.000 0.00 0.00 0.00 4.58
5602 7701 6.747280 GTCCATACAAATTTTCCACAGAATCG 59.253 38.462 0.00 0.00 0.00 3.34
5603 7702 6.747280 CGTCCATACAAATTTTCCACAGAATC 59.253 38.462 0.00 0.00 0.00 2.52
5604 7703 6.620678 CGTCCATACAAATTTTCCACAGAAT 58.379 36.000 0.00 0.00 0.00 2.40
5605 7704 5.563867 GCGTCCATACAAATTTTCCACAGAA 60.564 40.000 0.00 0.00 0.00 3.02
5606 7705 4.083003 GCGTCCATACAAATTTTCCACAGA 60.083 41.667 0.00 0.00 0.00 3.41
5607 7706 4.165779 GCGTCCATACAAATTTTCCACAG 58.834 43.478 0.00 0.00 0.00 3.66
5608 7707 3.365465 CGCGTCCATACAAATTTTCCACA 60.365 43.478 0.00 0.00 0.00 4.17
5609 7708 3.168193 CGCGTCCATACAAATTTTCCAC 58.832 45.455 0.00 0.00 0.00 4.02
5610 7709 2.814919 ACGCGTCCATACAAATTTTCCA 59.185 40.909 5.58 0.00 0.00 3.53
5611 7710 3.168193 CACGCGTCCATACAAATTTTCC 58.832 45.455 9.86 0.00 0.00 3.13
5612 7711 3.120130 TCCACGCGTCCATACAAATTTTC 60.120 43.478 9.86 0.00 0.00 2.29
5613 7712 2.814919 TCCACGCGTCCATACAAATTTT 59.185 40.909 9.86 0.00 0.00 1.82
5614 7713 2.428491 TCCACGCGTCCATACAAATTT 58.572 42.857 9.86 0.00 0.00 1.82
5615 7714 2.102070 TCCACGCGTCCATACAAATT 57.898 45.000 9.86 0.00 0.00 1.82
5616 7715 2.102070 TTCCACGCGTCCATACAAAT 57.898 45.000 9.86 0.00 0.00 2.32
5617 7716 1.735018 CATTCCACGCGTCCATACAAA 59.265 47.619 9.86 0.00 0.00 2.83
5618 7717 1.066787 TCATTCCACGCGTCCATACAA 60.067 47.619 9.86 0.00 0.00 2.41
5619 7718 0.533032 TCATTCCACGCGTCCATACA 59.467 50.000 9.86 0.00 0.00 2.29
5620 7719 1.865865 ATCATTCCACGCGTCCATAC 58.134 50.000 9.86 0.00 0.00 2.39
5621 7720 3.737032 TTATCATTCCACGCGTCCATA 57.263 42.857 9.86 0.00 0.00 2.74
5622 7721 2.612212 GTTTATCATTCCACGCGTCCAT 59.388 45.455 9.86 0.00 0.00 3.41
5623 7722 2.004017 GTTTATCATTCCACGCGTCCA 58.996 47.619 9.86 0.00 0.00 4.02
5624 7723 2.004017 TGTTTATCATTCCACGCGTCC 58.996 47.619 9.86 0.00 0.00 4.79
5625 7724 3.733024 TTGTTTATCATTCCACGCGTC 57.267 42.857 9.86 0.00 0.00 5.19
5626 7725 5.804692 TTATTGTTTATCATTCCACGCGT 57.195 34.783 5.58 5.58 0.00 6.01
5627 7726 7.678194 ATTTTATTGTTTATCATTCCACGCG 57.322 32.000 3.53 3.53 0.00 6.01
5655 7754 0.611714 TTAGCCGGAAGACTGGGAAC 59.388 55.000 5.05 0.00 42.48 3.62
5656 7755 0.902531 CTTAGCCGGAAGACTGGGAA 59.097 55.000 5.05 0.00 42.48 3.97
5657 7756 0.040646 TCTTAGCCGGAAGACTGGGA 59.959 55.000 5.05 0.00 42.48 4.37
5658 7757 2.591915 TCTTAGCCGGAAGACTGGG 58.408 57.895 5.05 0.00 42.48 4.45
5663 7762 1.204941 GAGCAAGTCTTAGCCGGAAGA 59.795 52.381 5.05 2.88 32.97 2.87
5664 7763 1.066858 TGAGCAAGTCTTAGCCGGAAG 60.067 52.381 5.05 0.00 0.00 3.46
5665 7764 0.973632 TGAGCAAGTCTTAGCCGGAA 59.026 50.000 5.05 0.00 0.00 4.30
5666 7765 0.973632 TTGAGCAAGTCTTAGCCGGA 59.026 50.000 5.05 0.00 0.00 5.14
5667 7766 1.363744 CTTGAGCAAGTCTTAGCCGG 58.636 55.000 0.00 0.00 33.87 6.13
5677 7776 2.423185 TCACCAACAACACTTGAGCAAG 59.577 45.455 8.60 8.60 43.79 4.01
5678 7777 2.441410 TCACCAACAACACTTGAGCAA 58.559 42.857 0.00 0.00 0.00 3.91
5679 7778 2.121291 TCACCAACAACACTTGAGCA 57.879 45.000 0.00 0.00 0.00 4.26
5680 7779 4.537015 GTTATCACCAACAACACTTGAGC 58.463 43.478 0.00 0.00 0.00 4.26
5681 7780 4.272504 ACGTTATCACCAACAACACTTGAG 59.727 41.667 0.00 0.00 0.00 3.02
5682 7781 4.193090 ACGTTATCACCAACAACACTTGA 58.807 39.130 0.00 0.00 0.00 3.02
5683 7782 4.545823 ACGTTATCACCAACAACACTTG 57.454 40.909 0.00 0.00 0.00 3.16
5684 7783 5.570234 AAACGTTATCACCAACAACACTT 57.430 34.783 0.00 0.00 0.00 3.16
5685 7784 5.124138 TGAAAACGTTATCACCAACAACACT 59.876 36.000 0.00 0.00 0.00 3.55
5686 7785 5.333513 TGAAAACGTTATCACCAACAACAC 58.666 37.500 0.00 0.00 0.00 3.32
5687 7786 5.449314 CCTGAAAACGTTATCACCAACAACA 60.449 40.000 0.00 0.00 0.00 3.33
5688 7787 4.973663 CCTGAAAACGTTATCACCAACAAC 59.026 41.667 0.00 0.00 0.00 3.32
5689 7788 4.882427 TCCTGAAAACGTTATCACCAACAA 59.118 37.500 0.00 0.00 0.00 2.83
5690 7789 4.452825 TCCTGAAAACGTTATCACCAACA 58.547 39.130 0.00 0.00 0.00 3.33
5691 7790 5.048991 ACATCCTGAAAACGTTATCACCAAC 60.049 40.000 0.00 0.00 0.00 3.77
5692 7791 5.067273 ACATCCTGAAAACGTTATCACCAA 58.933 37.500 0.00 0.00 0.00 3.67
5693 7792 4.647611 ACATCCTGAAAACGTTATCACCA 58.352 39.130 0.00 0.00 0.00 4.17
5694 7793 5.622770 AACATCCTGAAAACGTTATCACC 57.377 39.130 0.00 0.00 0.00 4.02
5695 7794 6.592607 TCCTAACATCCTGAAAACGTTATCAC 59.407 38.462 0.00 0.00 0.00 3.06
5696 7795 6.703319 TCCTAACATCCTGAAAACGTTATCA 58.297 36.000 0.00 0.00 0.00 2.15
5697 7796 7.787725 ATCCTAACATCCTGAAAACGTTATC 57.212 36.000 0.00 0.00 0.00 1.75
5698 7797 9.847224 ATTATCCTAACATCCTGAAAACGTTAT 57.153 29.630 0.00 0.00 0.00 1.89
5699 7798 9.104965 CATTATCCTAACATCCTGAAAACGTTA 57.895 33.333 0.00 0.00 0.00 3.18
5700 7799 7.610305 ACATTATCCTAACATCCTGAAAACGTT 59.390 33.333 0.00 0.00 0.00 3.99
5701 7800 7.110155 ACATTATCCTAACATCCTGAAAACGT 58.890 34.615 0.00 0.00 0.00 3.99
5702 7801 7.553881 ACATTATCCTAACATCCTGAAAACG 57.446 36.000 0.00 0.00 0.00 3.60
5706 7805 9.613428 CACTTAACATTATCCTAACATCCTGAA 57.387 33.333 0.00 0.00 0.00 3.02
5707 7806 8.768397 ACACTTAACATTATCCTAACATCCTGA 58.232 33.333 0.00 0.00 0.00 3.86
5708 7807 8.964476 ACACTTAACATTATCCTAACATCCTG 57.036 34.615 0.00 0.00 0.00 3.86
5717 7816 9.962783 GACTATCGTTACACTTAACATTATCCT 57.037 33.333 0.00 0.00 37.99 3.24
5718 7817 9.189723 GGACTATCGTTACACTTAACATTATCC 57.810 37.037 0.00 0.00 37.99 2.59
5719 7818 9.962783 AGGACTATCGTTACACTTAACATTATC 57.037 33.333 0.00 0.00 37.99 1.75
5723 7822 9.798994 CTTTAGGACTATCGTTACACTTAACAT 57.201 33.333 0.00 0.00 37.99 2.71
5724 7823 7.756722 GCTTTAGGACTATCGTTACACTTAACA 59.243 37.037 0.00 0.00 37.99 2.41
5725 7824 7.756722 TGCTTTAGGACTATCGTTACACTTAAC 59.243 37.037 0.00 0.00 35.17 2.01
5726 7825 7.829725 TGCTTTAGGACTATCGTTACACTTAA 58.170 34.615 0.00 0.00 0.00 1.85
5727 7826 7.395190 TGCTTTAGGACTATCGTTACACTTA 57.605 36.000 0.00 0.00 0.00 2.24
5728 7827 6.276832 TGCTTTAGGACTATCGTTACACTT 57.723 37.500 0.00 0.00 0.00 3.16
5729 7828 5.909621 TGCTTTAGGACTATCGTTACACT 57.090 39.130 0.00 0.00 0.00 3.55
5730 7829 5.865552 TGTTGCTTTAGGACTATCGTTACAC 59.134 40.000 0.00 0.00 0.00 2.90
5731 7830 5.865552 GTGTTGCTTTAGGACTATCGTTACA 59.134 40.000 0.00 0.00 0.00 2.41
5732 7831 6.034683 CAGTGTTGCTTTAGGACTATCGTTAC 59.965 42.308 0.00 0.00 0.00 2.50
5733 7832 6.071784 TCAGTGTTGCTTTAGGACTATCGTTA 60.072 38.462 0.00 0.00 0.00 3.18
5734 7833 4.929808 CAGTGTTGCTTTAGGACTATCGTT 59.070 41.667 0.00 0.00 0.00 3.85
5735 7834 4.219944 TCAGTGTTGCTTTAGGACTATCGT 59.780 41.667 0.00 0.00 0.00 3.73
5736 7835 4.744570 TCAGTGTTGCTTTAGGACTATCG 58.255 43.478 0.00 0.00 0.00 2.92
5737 7836 5.967088 TCTCAGTGTTGCTTTAGGACTATC 58.033 41.667 0.00 0.00 0.00 2.08
5738 7837 5.482175 ACTCTCAGTGTTGCTTTAGGACTAT 59.518 40.000 0.00 0.00 0.00 2.12
5739 7838 4.833380 ACTCTCAGTGTTGCTTTAGGACTA 59.167 41.667 0.00 0.00 0.00 2.59
5740 7839 3.643792 ACTCTCAGTGTTGCTTTAGGACT 59.356 43.478 0.00 0.00 0.00 3.85
5741 7840 3.996480 ACTCTCAGTGTTGCTTTAGGAC 58.004 45.455 0.00 0.00 0.00 3.85
5742 7841 5.246203 ACATACTCTCAGTGTTGCTTTAGGA 59.754 40.000 0.00 0.00 0.00 2.94
5743 7842 5.482908 ACATACTCTCAGTGTTGCTTTAGG 58.517 41.667 0.00 0.00 0.00 2.69
5744 7843 7.316640 ACTACATACTCTCAGTGTTGCTTTAG 58.683 38.462 0.00 0.00 0.00 1.85
5745 7844 7.228314 ACTACATACTCTCAGTGTTGCTTTA 57.772 36.000 0.00 0.00 0.00 1.85
5746 7845 6.102897 ACTACATACTCTCAGTGTTGCTTT 57.897 37.500 0.00 0.00 0.00 3.51
5747 7846 5.730296 ACTACATACTCTCAGTGTTGCTT 57.270 39.130 0.00 0.00 0.00 3.91
5748 7847 5.730296 AACTACATACTCTCAGTGTTGCT 57.270 39.130 0.00 0.00 0.00 3.91
5749 7848 6.387465 TGTAACTACATACTCTCAGTGTTGC 58.613 40.000 0.00 0.00 0.00 4.17
5750 7849 8.297426 TCTTGTAACTACATACTCTCAGTGTTG 58.703 37.037 0.00 0.00 35.89 3.33
5751 7850 8.405418 TCTTGTAACTACATACTCTCAGTGTT 57.595 34.615 0.00 0.00 35.89 3.32
5752 7851 7.997773 TCTTGTAACTACATACTCTCAGTGT 57.002 36.000 0.00 0.00 35.89 3.55
5753 7852 7.482113 CGTTCTTGTAACTACATACTCTCAGTG 59.518 40.741 0.00 0.00 35.89 3.66
5754 7853 7.389884 TCGTTCTTGTAACTACATACTCTCAGT 59.610 37.037 0.00 0.00 35.89 3.41
5755 7854 7.749808 TCGTTCTTGTAACTACATACTCTCAG 58.250 38.462 0.00 0.00 35.89 3.35
5756 7855 7.677454 TCGTTCTTGTAACTACATACTCTCA 57.323 36.000 0.00 0.00 35.89 3.27


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.