Multiple sequence alignment - TraesCS6D01G009700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G009700 chr6D 100.000 3505 0 0 603 4107 3738644 3742148 0.000000e+00 6473.0
1 TraesCS6D01G009700 chr6D 89.989 929 77 11 1656 2573 3726626 3727549 0.000000e+00 1186.0
2 TraesCS6D01G009700 chr6D 86.339 915 88 31 2028 2911 3763844 3764752 0.000000e+00 963.0
3 TraesCS6D01G009700 chr6D 89.204 741 40 11 604 1327 3725585 3726302 0.000000e+00 889.0
4 TraesCS6D01G009700 chr6D 84.830 646 70 16 2017 2641 4721467 4720829 3.490000e-175 625.0
5 TraesCS6D01G009700 chr6D 100.000 332 0 0 1 332 3738042 3738373 7.550000e-172 614.0
6 TraesCS6D01G009700 chr6D 85.333 450 52 8 1502 1948 4722020 4721582 1.740000e-123 453.0
7 TraesCS6D01G009700 chr6D 83.641 434 44 14 1502 1930 3713535 3713946 2.320000e-102 383.0
8 TraesCS6D01G009700 chr6D 87.402 127 10 1 1022 1148 3757098 3757218 1.540000e-29 141.0
9 TraesCS6D01G009700 chr6D 85.938 128 8 2 1324 1451 3726333 3726450 1.200000e-25 128.0
10 TraesCS6D01G009700 chr6D 83.721 129 15 3 1020 1148 3712909 3713031 2.590000e-22 117.0
11 TraesCS6D01G009700 chr6D 89.091 55 6 0 3111 3165 471569546 471569492 7.370000e-08 69.4
12 TraesCS6D01G009700 chr6D 100.000 36 0 0 826 861 3725929 3725964 2.650000e-07 67.6
13 TraesCS6D01G009700 chr6D 100.000 36 0 0 943 978 3738867 3738902 2.650000e-07 67.6
14 TraesCS6D01G009700 chr6D 100.000 36 0 0 826 861 3738984 3739019 2.650000e-07 67.6
15 TraesCS6D01G009700 chr6D 97.222 36 1 0 943 978 3725812 3725847 1.230000e-05 62.1
16 TraesCS6D01G009700 chr6D 81.707 82 6 1 2492 2573 3766658 3766730 4.430000e-05 60.2
17 TraesCS6D01G009700 chr6A 94.694 2318 114 6 1326 3638 3747718 3745405 0.000000e+00 3591.0
18 TraesCS6D01G009700 chr6A 94.904 726 33 3 604 1327 3748497 3747774 0.000000e+00 1133.0
19 TraesCS6D01G009700 chr6A 93.487 476 30 1 3633 4107 346586498 346586973 0.000000e+00 706.0
20 TraesCS6D01G009700 chr6A 87.040 571 63 9 2010 2573 3772975 3772409 5.790000e-178 634.0
21 TraesCS6D01G009700 chr6A 84.532 459 48 14 1502 1948 3773531 3773084 2.270000e-117 433.0
22 TraesCS6D01G009700 chr6A 88.083 193 20 3 1 191 3749158 3748967 4.130000e-55 226.0
23 TraesCS6D01G009700 chr6A 88.189 127 15 0 1020 1146 3773995 3773869 7.110000e-33 152.0
24 TraesCS6D01G009700 chr6A 93.333 45 3 0 943 987 3748276 3748232 2.650000e-07 67.6
25 TraesCS6D01G009700 chr6B 86.400 1875 161 39 1323 3134 9079640 9081483 0.000000e+00 1964.0
26 TraesCS6D01G009700 chr6B 83.564 651 84 15 2010 2641 9059332 9059978 4.570000e-164 588.0
27 TraesCS6D01G009700 chr6B 83.515 643 74 20 2017 2641 9035574 9036202 4.610000e-159 571.0
28 TraesCS6D01G009700 chr6B 85.242 454 45 12 1502 1948 9058785 9059223 8.100000e-122 448.0
29 TraesCS6D01G009700 chr6B 85.092 436 46 10 1502 1929 9035015 9035439 1.060000e-115 427.0
30 TraesCS6D01G009700 chr6B 83.550 462 41 13 3169 3628 9081482 9081910 2.300000e-107 399.0
31 TraesCS6D01G009700 chr6B 90.076 262 17 4 969 1221 9079268 9079529 8.510000e-87 331.0
32 TraesCS6D01G009700 chr6B 85.075 268 21 7 675 941 9034152 9034401 5.270000e-64 255.0
33 TraesCS6D01G009700 chr6B 82.292 288 42 3 665 943 9057672 9057959 1.480000e-59 241.0
34 TraesCS6D01G009700 chr6B 87.597 129 10 1 1020 1148 9058002 9058124 1.190000e-30 145.0
35 TraesCS6D01G009700 chr6B 87.097 124 16 0 1020 1143 9034446 9034569 1.540000e-29 141.0
36 TraesCS6D01G009700 chr6B 97.297 37 1 0 948 984 9034291 9034327 3.430000e-06 63.9
37 TraesCS6D01G009700 chr6B 97.297 37 1 0 948 984 9057847 9057883 3.430000e-06 63.9
38 TraesCS6D01G009700 chr6B 93.023 43 3 0 3166 3208 117805727 117805769 3.430000e-06 63.9
39 TraesCS6D01G009700 chr6B 87.273 55 7 0 3112 3166 395312398 395312344 3.430000e-06 63.9
40 TraesCS6D01G009700 chr7D 94.883 469 24 0 3639 4107 583072599 583073067 0.000000e+00 734.0
41 TraesCS6D01G009700 chr7D 93.542 480 30 1 3629 4107 583081383 583081862 0.000000e+00 713.0
42 TraesCS6D01G009700 chr7D 87.719 57 7 0 3110 3166 30752532 30752476 2.650000e-07 67.6
43 TraesCS6D01G009700 chr4D 94.492 472 25 1 3636 4107 19347375 19346905 0.000000e+00 726.0
44 TraesCS6D01G009700 chr4D 93.869 473 27 2 3636 4107 203010755 203010284 0.000000e+00 712.0
45 TraesCS6D01G009700 chr4D 90.385 52 5 0 3166 3217 500817464 500817515 7.370000e-08 69.4
46 TraesCS6D01G009700 chr2D 94.093 474 27 1 3634 4107 399427338 399427810 0.000000e+00 719.0
47 TraesCS6D01G009700 chr2D 93.882 474 28 1 3634 4107 289159598 289159126 0.000000e+00 713.0
48 TraesCS6D01G009700 chr2D 89.286 56 4 2 3111 3165 477989272 477989218 7.370000e-08 69.4
49 TraesCS6D01G009700 chr5D 93.697 476 27 3 3635 4107 128586688 128586213 0.000000e+00 710.0
50 TraesCS6D01G009700 chr5D 89.286 56 6 0 3111 3166 484405496 484405441 2.050000e-08 71.3
51 TraesCS6D01G009700 chr5D 90.385 52 5 0 3166 3217 437693085 437693034 7.370000e-08 69.4
52 TraesCS6D01G009700 chr5D 87.500 56 7 0 3111 3166 248588786 248588841 9.530000e-07 65.8
53 TraesCS6D01G009700 chr2B 92.276 492 34 4 3619 4107 117071609 117072099 0.000000e+00 695.0
54 TraesCS6D01G009700 chr2B 88.889 54 6 0 3111 3164 777523541 777523488 2.650000e-07 67.6
55 TraesCS6D01G009700 chr1B 80.885 565 83 21 2022 2573 51106506 51107058 4.910000e-114 422.0
56 TraesCS6D01G009700 chr1B 86.538 104 14 0 2470 2573 51140973 51141076 9.330000e-22 115.0
57 TraesCS6D01G009700 chr1D 80.212 566 82 25 2022 2574 33639646 33640194 8.270000e-107 398.0
58 TraesCS6D01G009700 chr1D 83.473 357 41 10 1571 1916 33639290 33639639 2.380000e-82 316.0
59 TraesCS6D01G009700 chr1D 96.970 33 0 1 3451 3483 363584115 363584146 2.000000e-03 54.7
60 TraesCS6D01G009700 chrUn 83.410 434 46 14 1502 1930 306428747 306429159 3.000000e-101 379.0
61 TraesCS6D01G009700 chrUn 83.721 129 15 3 1020 1148 306428121 306428243 2.590000e-22 117.0
62 TraesCS6D01G009700 chr1A 94.000 50 3 0 3166 3215 371225887 371225936 4.400000e-10 76.8
63 TraesCS6D01G009700 chr3A 89.286 56 6 0 3111 3166 510711911 510711856 2.050000e-08 71.3
64 TraesCS6D01G009700 chr4B 89.583 48 5 0 3168 3215 66540685 66540638 1.230000e-05 62.1
65 TraesCS6D01G009700 chr3B 86.792 53 5 2 3166 3217 798948915 798948864 1.590000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G009700 chr6D 3738042 3742148 4106 False 1805.550000 6473 100.000000 1 4107 4 chr6D.!!$F4 4106
1 TraesCS6D01G009700 chr6D 4720829 4722020 1191 True 539.000000 625 85.081500 1502 2641 2 chr6D.!!$R2 1139
2 TraesCS6D01G009700 chr6D 3763844 3766730 2886 False 511.600000 963 84.023000 2028 2911 2 chr6D.!!$F5 883
3 TraesCS6D01G009700 chr6D 3725585 3727549 1964 False 466.540000 1186 92.470600 604 2573 5 chr6D.!!$F3 1969
4 TraesCS6D01G009700 chr6D 3712909 3713946 1037 False 250.000000 383 83.681000 1020 1930 2 chr6D.!!$F2 910
5 TraesCS6D01G009700 chr6A 3745405 3749158 3753 True 1254.400000 3591 92.753500 1 3638 4 chr6A.!!$R1 3637
6 TraesCS6D01G009700 chr6A 3772409 3773995 1586 True 406.333333 634 86.587000 1020 2573 3 chr6A.!!$R2 1553
7 TraesCS6D01G009700 chr6B 9079268 9081910 2642 False 898.000000 1964 86.675333 969 3628 3 chr6B.!!$F4 2659
8 TraesCS6D01G009700 chr6B 9057672 9059978 2306 False 297.180000 588 87.198400 665 2641 5 chr6B.!!$F3 1976
9 TraesCS6D01G009700 chr6B 9034152 9036202 2050 False 291.580000 571 87.615200 675 2641 5 chr6B.!!$F2 1966
10 TraesCS6D01G009700 chr1B 51106506 51107058 552 False 422.000000 422 80.885000 2022 2573 1 chr1B.!!$F1 551
11 TraesCS6D01G009700 chr1D 33639290 33640194 904 False 357.000000 398 81.842500 1571 2574 2 chr1D.!!$F2 1003
12 TraesCS6D01G009700 chrUn 306428121 306429159 1038 False 248.000000 379 83.565500 1020 1930 2 chrUn.!!$F1 910

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
200 219 0.104462 TGGGAGGGGGATCGATGAAT 60.104 55.0 0.54 0.00 0.0 2.57 F
326 345 1.102154 CTTAATTGGACGCATGGCCA 58.898 50.0 8.56 8.56 0.0 5.36 F
1862 2436 1.271856 TCACCATAAACTCTGCCGGA 58.728 50.0 5.05 0.00 0.0 5.14 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2024 2690 0.105039 GGAGGATCTTCGCCGTGAAT 59.895 55.000 0.00 0.00 35.63 2.57 R
2165 2831 3.472943 GATGATGCTGAGGGGCGCT 62.473 63.158 7.64 2.69 34.52 5.92 R
3829 4646 0.031994 GACGTGTGGGCATTTTTGCT 59.968 50.000 0.00 0.00 34.73 3.91 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 3.007635 ACCTTATTCTTAACAGGCACGC 58.992 45.455 0.00 0.00 0.00 5.34
41 42 2.504681 CGCTGCCGAAATTGCCAC 60.505 61.111 0.00 0.00 36.29 5.01
52 53 1.047596 AATTGCCACCACTGTGCCAA 61.048 50.000 1.29 3.45 43.16 4.52
53 54 1.747325 ATTGCCACCACTGTGCCAAC 61.747 55.000 1.29 0.00 41.98 3.77
54 55 2.832661 GCCACCACTGTGCCAACA 60.833 61.111 1.29 0.00 41.35 3.33
67 68 3.339547 CCAACATTGGGAGGAACGT 57.660 52.632 2.43 0.00 44.70 3.99
70 71 1.737793 CAACATTGGGAGGAACGTAGC 59.262 52.381 0.00 0.00 0.00 3.58
107 108 5.135508 ACCTAACTATATCACCACATCGC 57.864 43.478 0.00 0.00 0.00 4.58
112 113 4.814147 ACTATATCACCACATCGCAGATG 58.186 43.478 14.34 14.34 45.12 2.90
123 124 2.281345 GCAGATGCAGGATCCCCG 60.281 66.667 8.55 0.46 41.59 5.73
124 125 2.281345 CAGATGCAGGATCCCCGC 60.281 66.667 15.36 15.36 37.58 6.13
165 167 2.535331 GCAAATGAGAGAGGACGAGAC 58.465 52.381 0.00 0.00 0.00 3.36
180 182 0.391395 GAGACCTGAGGACTCGTCGA 60.391 60.000 14.76 0.00 35.20 4.20
185 204 0.748367 CTGAGGACTCGTCGATGGGA 60.748 60.000 12.53 0.00 0.00 4.37
186 205 0.748367 TGAGGACTCGTCGATGGGAG 60.748 60.000 12.53 10.31 36.36 4.30
189 208 2.442272 ACTCGTCGATGGGAGGGG 60.442 66.667 12.53 0.00 37.05 4.79
191 210 3.733507 CTCGTCGATGGGAGGGGGA 62.734 68.421 0.00 0.00 0.00 4.81
193 212 2.574955 CGTCGATGGGAGGGGGATC 61.575 68.421 0.00 0.00 0.00 3.36
195 214 2.203640 CGATGGGAGGGGGATCGA 60.204 66.667 0.00 0.00 41.18 3.59
200 219 0.104462 TGGGAGGGGGATCGATGAAT 60.104 55.000 0.54 0.00 0.00 2.57
203 222 1.277557 GGAGGGGGATCGATGAATCAG 59.722 57.143 0.54 0.00 0.00 2.90
207 226 1.694150 GGGGATCGATGAATCAGTGGA 59.306 52.381 0.54 0.00 0.00 4.02
214 233 7.361542 GGGATCGATGAATCAGTGGAAAATATG 60.362 40.741 0.54 0.00 0.00 1.78
215 234 6.866010 TCGATGAATCAGTGGAAAATATGG 57.134 37.500 0.00 0.00 0.00 2.74
216 235 6.356556 TCGATGAATCAGTGGAAAATATGGT 58.643 36.000 0.00 0.00 0.00 3.55
217 236 6.828273 TCGATGAATCAGTGGAAAATATGGTT 59.172 34.615 0.00 0.00 0.00 3.67
218 237 7.990314 TCGATGAATCAGTGGAAAATATGGTTA 59.010 33.333 0.00 0.00 0.00 2.85
219 238 8.070171 CGATGAATCAGTGGAAAATATGGTTAC 58.930 37.037 0.00 0.00 0.00 2.50
220 239 7.639113 TGAATCAGTGGAAAATATGGTTACC 57.361 36.000 0.00 0.00 0.00 2.85
221 240 7.178573 TGAATCAGTGGAAAATATGGTTACCA 58.821 34.615 6.53 6.53 38.19 3.25
222 241 7.339212 TGAATCAGTGGAAAATATGGTTACCAG 59.661 37.037 10.74 0.00 36.75 4.00
223 242 6.381498 TCAGTGGAAAATATGGTTACCAGA 57.619 37.500 10.74 5.52 36.75 3.86
224 243 6.414732 TCAGTGGAAAATATGGTTACCAGAG 58.585 40.000 10.74 0.00 36.75 3.35
225 244 5.590259 CAGTGGAAAATATGGTTACCAGAGG 59.410 44.000 10.74 0.00 36.75 3.69
226 245 5.491078 AGTGGAAAATATGGTTACCAGAGGA 59.509 40.000 10.74 0.00 36.75 3.71
227 246 6.160459 AGTGGAAAATATGGTTACCAGAGGAT 59.840 38.462 10.74 0.00 36.75 3.24
228 247 6.833933 GTGGAAAATATGGTTACCAGAGGATT 59.166 38.462 10.74 4.23 36.75 3.01
229 248 7.342026 GTGGAAAATATGGTTACCAGAGGATTT 59.658 37.037 10.74 8.38 36.75 2.17
230 249 7.898636 TGGAAAATATGGTTACCAGAGGATTTT 59.101 33.333 19.62 19.62 36.75 1.82
231 250 8.758829 GGAAAATATGGTTACCAGAGGATTTTT 58.241 33.333 20.10 14.79 36.75 1.94
263 282 4.822350 TCATGTTCATTTTGGGTCGTAACA 59.178 37.500 0.00 0.00 0.00 2.41
264 283 5.475220 TCATGTTCATTTTGGGTCGTAACAT 59.525 36.000 0.00 0.00 36.73 2.71
266 285 5.067273 TGTTCATTTTGGGTCGTAACATCT 58.933 37.500 0.00 0.00 0.00 2.90
267 286 5.049060 TGTTCATTTTGGGTCGTAACATCTG 60.049 40.000 0.00 0.00 0.00 2.90
268 287 4.900684 TCATTTTGGGTCGTAACATCTGA 58.099 39.130 0.00 0.00 0.00 3.27
269 288 5.309638 TCATTTTGGGTCGTAACATCTGAA 58.690 37.500 0.00 0.00 0.00 3.02
270 289 5.765677 TCATTTTGGGTCGTAACATCTGAAA 59.234 36.000 0.00 0.00 0.00 2.69
271 290 6.432783 TCATTTTGGGTCGTAACATCTGAAAT 59.567 34.615 0.00 0.00 0.00 2.17
272 291 6.642707 TTTTGGGTCGTAACATCTGAAATT 57.357 33.333 0.00 0.00 0.00 1.82
273 292 6.642707 TTTGGGTCGTAACATCTGAAATTT 57.357 33.333 0.00 0.00 0.00 1.82
274 293 7.747155 TTTGGGTCGTAACATCTGAAATTTA 57.253 32.000 0.00 0.00 0.00 1.40
275 294 6.730960 TGGGTCGTAACATCTGAAATTTAC 57.269 37.500 0.00 0.00 0.00 2.01
276 295 6.231951 TGGGTCGTAACATCTGAAATTTACA 58.768 36.000 0.00 0.00 0.00 2.41
277 296 6.370442 TGGGTCGTAACATCTGAAATTTACAG 59.630 38.462 9.89 9.89 36.80 2.74
278 297 6.183360 GGGTCGTAACATCTGAAATTTACAGG 60.183 42.308 13.94 5.62 36.22 4.00
279 298 6.592607 GGTCGTAACATCTGAAATTTACAGGA 59.407 38.462 13.94 2.53 36.22 3.86
280 299 7.201530 GGTCGTAACATCTGAAATTTACAGGAG 60.202 40.741 13.94 10.58 36.22 3.69
281 300 6.312918 TCGTAACATCTGAAATTTACAGGAGC 59.687 38.462 13.94 0.00 36.22 4.70
282 301 6.313905 CGTAACATCTGAAATTTACAGGAGCT 59.686 38.462 13.94 0.00 36.22 4.09
283 302 7.491372 CGTAACATCTGAAATTTACAGGAGCTA 59.509 37.037 13.94 4.75 36.22 3.32
284 303 9.331282 GTAACATCTGAAATTTACAGGAGCTAT 57.669 33.333 13.94 2.48 36.22 2.97
290 309 9.261180 TCTGAAATTTACAGGAGCTATATTTCG 57.739 33.333 13.94 0.00 34.76 3.46
291 310 9.261180 CTGAAATTTACAGGAGCTATATTTCGA 57.739 33.333 8.79 0.00 34.76 3.71
292 311 9.042008 TGAAATTTACAGGAGCTATATTTCGAC 57.958 33.333 0.00 0.00 34.76 4.20
293 312 8.958119 AAATTTACAGGAGCTATATTTCGACA 57.042 30.769 0.00 0.00 0.00 4.35
294 313 7.948278 ATTTACAGGAGCTATATTTCGACAC 57.052 36.000 0.00 0.00 0.00 3.67
295 314 6.710597 TTACAGGAGCTATATTTCGACACT 57.289 37.500 0.00 0.00 0.00 3.55
296 315 4.938080 ACAGGAGCTATATTTCGACACTG 58.062 43.478 0.00 0.00 0.00 3.66
297 316 4.202161 ACAGGAGCTATATTTCGACACTGG 60.202 45.833 0.00 0.00 0.00 4.00
298 317 3.961408 AGGAGCTATATTTCGACACTGGT 59.039 43.478 0.00 0.00 0.00 4.00
299 318 4.038162 AGGAGCTATATTTCGACACTGGTC 59.962 45.833 0.00 0.00 40.77 4.02
300 319 4.038162 GGAGCTATATTTCGACACTGGTCT 59.962 45.833 0.00 0.00 42.05 3.85
301 320 4.938080 AGCTATATTTCGACACTGGTCTG 58.062 43.478 0.00 0.00 42.05 3.51
302 321 4.645136 AGCTATATTTCGACACTGGTCTGA 59.355 41.667 0.00 0.00 42.05 3.27
303 322 4.979197 GCTATATTTCGACACTGGTCTGAG 59.021 45.833 0.00 0.00 42.05 3.35
304 323 5.450688 GCTATATTTCGACACTGGTCTGAGT 60.451 44.000 0.00 0.00 42.05 3.41
305 324 6.238676 GCTATATTTCGACACTGGTCTGAGTA 60.239 42.308 0.00 0.00 42.05 2.59
306 325 6.716934 ATATTTCGACACTGGTCTGAGTAT 57.283 37.500 0.00 0.00 42.05 2.12
307 326 4.436242 TTTCGACACTGGTCTGAGTATC 57.564 45.455 0.00 0.00 42.05 2.24
308 327 3.351794 TCGACACTGGTCTGAGTATCT 57.648 47.619 0.00 0.00 42.05 1.98
309 328 3.687125 TCGACACTGGTCTGAGTATCTT 58.313 45.455 0.00 0.00 42.05 2.40
310 329 4.840271 TCGACACTGGTCTGAGTATCTTA 58.160 43.478 0.00 0.00 42.05 2.10
311 330 5.250982 TCGACACTGGTCTGAGTATCTTAA 58.749 41.667 0.00 0.00 42.05 1.85
312 331 5.886474 TCGACACTGGTCTGAGTATCTTAAT 59.114 40.000 0.00 0.00 42.05 1.40
313 332 6.377429 TCGACACTGGTCTGAGTATCTTAATT 59.623 38.462 0.00 0.00 42.05 1.40
314 333 6.473778 CGACACTGGTCTGAGTATCTTAATTG 59.526 42.308 0.00 0.00 42.05 2.32
315 334 6.644347 ACACTGGTCTGAGTATCTTAATTGG 58.356 40.000 0.00 0.00 34.92 3.16
316 335 6.440647 ACACTGGTCTGAGTATCTTAATTGGA 59.559 38.462 0.00 0.00 34.92 3.53
317 336 6.758886 CACTGGTCTGAGTATCTTAATTGGAC 59.241 42.308 0.00 0.00 34.92 4.02
318 337 5.902681 TGGTCTGAGTATCTTAATTGGACG 58.097 41.667 0.00 0.00 34.92 4.79
319 338 4.745620 GGTCTGAGTATCTTAATTGGACGC 59.254 45.833 0.00 0.00 34.92 5.19
320 339 5.348986 GTCTGAGTATCTTAATTGGACGCA 58.651 41.667 0.00 0.00 34.92 5.24
321 340 5.986135 GTCTGAGTATCTTAATTGGACGCAT 59.014 40.000 0.00 0.00 34.92 4.73
322 341 5.985530 TCTGAGTATCTTAATTGGACGCATG 59.014 40.000 0.00 0.00 34.92 4.06
323 342 5.056480 TGAGTATCTTAATTGGACGCATGG 58.944 41.667 0.00 0.00 34.92 3.66
324 343 3.815401 AGTATCTTAATTGGACGCATGGC 59.185 43.478 0.00 0.00 0.00 4.40
325 344 1.388547 TCTTAATTGGACGCATGGCC 58.611 50.000 0.00 0.00 0.00 5.36
326 345 1.102154 CTTAATTGGACGCATGGCCA 58.898 50.000 8.56 8.56 0.00 5.36
328 347 4.360643 ATTGGACGCATGGCCAAT 57.639 50.000 10.96 9.58 46.79 3.16
329 348 3.286407 TTGGACGCATGGCCAATG 58.714 55.556 10.96 10.29 39.14 2.82
330 349 2.349672 TTGGACGCATGGCCAATGG 61.350 57.895 10.96 3.32 39.14 3.16
640 722 9.048446 GTTACTGGATAACTTGAAGTGTACAAA 57.952 33.333 0.00 0.00 40.19 2.83
641 723 7.492352 ACTGGATAACTTGAAGTGTACAAAC 57.508 36.000 0.00 0.00 0.00 2.93
642 724 7.280356 ACTGGATAACTTGAAGTGTACAAACT 58.720 34.615 0.00 0.00 0.00 2.66
761 843 2.143575 TTTAAGGCGGTCCCATGGCA 62.144 55.000 6.09 0.00 35.39 4.92
763 845 2.143575 TAAGGCGGTCCCATGGCAAA 62.144 55.000 6.09 0.00 35.39 3.68
1077 1178 4.020039 TCACCAACTCCGGAGCTAATTAAA 60.020 41.667 31.56 7.62 0.00 1.52
1204 1419 7.495135 TTTGCCTTCATTTTCTTTTCATTCC 57.505 32.000 0.00 0.00 0.00 3.01
1245 1466 8.483307 TTTACCAAAACTAATACTCTTAGGCG 57.517 34.615 0.00 0.00 0.00 5.52
1425 1893 2.398754 ACAAAAGGGGAGAAAAGGGG 57.601 50.000 0.00 0.00 0.00 4.79
1457 1934 2.420058 AACTAAAGGGCTCCAATCCG 57.580 50.000 0.00 0.00 0.00 4.18
1573 2076 3.792401 TGCCTAACTGTCATCGTATTGG 58.208 45.455 0.00 0.00 0.00 3.16
1658 2221 4.375405 CGATCACACTCAACTTCGTTTCTG 60.375 45.833 0.00 0.00 0.00 3.02
1769 2343 2.926242 GGGTTCCAGTCGGTCCCA 60.926 66.667 8.74 0.00 42.77 4.37
1862 2436 1.271856 TCACCATAAACTCTGCCGGA 58.728 50.000 5.05 0.00 0.00 5.14
1966 2621 1.978080 GCATGCATGTGTCCACCCA 60.978 57.895 26.79 0.00 0.00 4.51
2165 2831 1.804601 TCTCAGTCAGCGTCTTCGTA 58.195 50.000 0.00 0.00 39.49 3.43
2200 2866 2.166254 TCATCGTGAGCAACTGAGCATA 59.834 45.455 0.00 0.00 36.85 3.14
2238 2925 6.778069 TGGTAGTTTGTTGGTCCATGATTAAA 59.222 34.615 0.00 0.00 0.00 1.52
2245 2932 8.877864 TTGTTGGTCCATGATTAAATCTTACT 57.122 30.769 0.00 0.00 0.00 2.24
2364 3085 1.409427 GTCGTCTGGTTCCTCTATGGG 59.591 57.143 0.00 0.00 36.20 4.00
2413 3135 5.626132 GCCGTACGTGAACAACAAAAATAAT 59.374 36.000 15.21 0.00 0.00 1.28
2574 3329 1.223487 GCGCCAAAGGAGGTGGATA 59.777 57.895 0.00 0.00 38.54 2.59
2579 3334 1.139058 CCAAAGGAGGTGGATAGACCG 59.861 57.143 0.00 0.00 41.35 4.79
2714 3481 1.205893 GGCGAGACCAAAGAGATCAGT 59.794 52.381 0.00 0.00 38.86 3.41
2805 3572 1.006813 TCCTGGGGCACAAATGGTAT 58.993 50.000 0.00 0.00 0.00 2.73
2885 3659 0.535335 GCTCCGGTAGTGTCATGGAA 59.465 55.000 0.00 0.00 0.00 3.53
2989 3786 5.105392 ACCGTTAATGTTCCATTTCATGCAT 60.105 36.000 0.00 0.00 0.00 3.96
3039 3836 6.260050 TCGTAAGGCTTATTTTATTCTGCCAG 59.740 38.462 10.65 0.00 42.46 4.85
3073 3870 1.541233 CCACTGTCCAGTCACTTCCAC 60.541 57.143 0.00 0.00 40.20 4.02
3136 3933 3.085952 ACATGTGGTTGGATGGTTAGG 57.914 47.619 0.00 0.00 0.00 2.69
3138 3935 3.075283 ACATGTGGTTGGATGGTTAGGAA 59.925 43.478 0.00 0.00 0.00 3.36
3149 3946 2.607499 TGGTTAGGAAGACGGTGGTAA 58.393 47.619 0.00 0.00 0.00 2.85
3243 4045 2.369394 GGACTGAATCCGCTTTTCCAT 58.631 47.619 0.00 0.00 37.88 3.41
3263 4065 4.383444 CCATGAGCATGACTTCACCTCTTA 60.383 45.833 11.84 0.00 41.20 2.10
3328 4142 1.136474 CAAGCAATGCGCATGTGTTTG 60.136 47.619 28.50 28.50 46.13 2.93
3333 4147 1.421382 ATGCGCATGTGTTTGCTTTC 58.579 45.000 24.69 0.00 40.54 2.62
3371 4185 0.032217 ATGGGCCGAAATGGGATGTT 60.032 50.000 0.00 0.00 38.63 2.71
3450 4264 4.392921 TTTTGAGGCAATTTTCCGTGAA 57.607 36.364 0.00 0.00 0.00 3.18
3451 4265 4.392921 TTTGAGGCAATTTTCCGTGAAA 57.607 36.364 0.00 0.00 0.00 2.69
3452 4266 4.392921 TTGAGGCAATTTTCCGTGAAAA 57.607 36.364 12.24 12.24 44.04 2.29
3610 4427 4.237207 GGGTAGCGCTGGTAGCCC 62.237 72.222 22.90 18.59 45.03 5.19
3629 4446 1.477558 CCTTGAGGCACTGTTGGTTCT 60.478 52.381 0.00 0.00 41.55 3.01
3631 4448 2.435372 TGAGGCACTGTTGGTTCTTT 57.565 45.000 0.00 0.00 41.55 2.52
3632 4449 2.023673 TGAGGCACTGTTGGTTCTTTG 58.976 47.619 0.00 0.00 41.55 2.77
3633 4450 2.297701 GAGGCACTGTTGGTTCTTTGA 58.702 47.619 0.00 0.00 41.55 2.69
3634 4451 2.887152 GAGGCACTGTTGGTTCTTTGAT 59.113 45.455 0.00 0.00 41.55 2.57
3635 4452 4.072131 GAGGCACTGTTGGTTCTTTGATA 58.928 43.478 0.00 0.00 41.55 2.15
3636 4453 4.469657 AGGCACTGTTGGTTCTTTGATAA 58.530 39.130 0.00 0.00 37.18 1.75
3637 4454 4.892934 AGGCACTGTTGGTTCTTTGATAAA 59.107 37.500 0.00 0.00 37.18 1.40
3638 4455 5.010012 AGGCACTGTTGGTTCTTTGATAAAG 59.990 40.000 0.00 0.00 37.18 1.85
3639 4456 5.222631 GCACTGTTGGTTCTTTGATAAAGG 58.777 41.667 1.88 0.00 39.01 3.11
3640 4457 5.009610 GCACTGTTGGTTCTTTGATAAAGGA 59.990 40.000 1.88 0.00 39.01 3.36
3641 4458 6.438763 CACTGTTGGTTCTTTGATAAAGGAC 58.561 40.000 4.50 4.50 44.68 3.85
3642 4459 5.238650 ACTGTTGGTTCTTTGATAAAGGACG 59.761 40.000 6.64 0.00 46.06 4.79
3643 4460 4.023536 TGTTGGTTCTTTGATAAAGGACGC 60.024 41.667 6.64 2.04 46.06 5.19
3644 4461 3.078837 TGGTTCTTTGATAAAGGACGCC 58.921 45.455 6.64 3.39 46.06 5.68
3645 4462 2.095372 GGTTCTTTGATAAAGGACGCCG 59.905 50.000 6.64 0.00 46.06 6.46
3646 4463 2.997986 GTTCTTTGATAAAGGACGCCGA 59.002 45.455 0.00 0.00 37.26 5.54
3647 4464 3.536956 TCTTTGATAAAGGACGCCGAT 57.463 42.857 0.00 0.00 39.01 4.18
3648 4465 4.659111 TCTTTGATAAAGGACGCCGATA 57.341 40.909 0.00 0.00 39.01 2.92
3649 4466 5.209818 TCTTTGATAAAGGACGCCGATAT 57.790 39.130 0.00 0.00 39.01 1.63
3650 4467 5.227908 TCTTTGATAAAGGACGCCGATATC 58.772 41.667 0.00 12.50 39.01 1.63
3651 4468 3.587797 TGATAAAGGACGCCGATATCC 57.412 47.619 0.00 0.00 34.98 2.59
3652 4469 2.894765 TGATAAAGGACGCCGATATCCA 59.105 45.455 0.00 0.00 37.47 3.41
3653 4470 2.806608 TAAAGGACGCCGATATCCAC 57.193 50.000 0.00 0.00 37.47 4.02
3654 4471 0.106149 AAAGGACGCCGATATCCACC 59.894 55.000 0.00 0.00 37.47 4.61
3655 4472 1.046472 AAGGACGCCGATATCCACCA 61.046 55.000 0.00 0.00 37.47 4.17
3656 4473 1.300697 GGACGCCGATATCCACCAC 60.301 63.158 0.00 0.00 34.87 4.16
3657 4474 1.440060 GACGCCGATATCCACCACA 59.560 57.895 0.00 0.00 0.00 4.17
3658 4475 0.874607 GACGCCGATATCCACCACAC 60.875 60.000 0.00 0.00 0.00 3.82
3659 4476 1.949133 CGCCGATATCCACCACACG 60.949 63.158 0.00 0.00 0.00 4.49
3660 4477 1.143183 GCCGATATCCACCACACGT 59.857 57.895 0.00 0.00 0.00 4.49
3661 4478 1.151777 GCCGATATCCACCACACGTG 61.152 60.000 15.48 15.48 42.62 4.49
3662 4479 0.174845 CCGATATCCACCACACGTGT 59.825 55.000 17.22 17.22 41.26 4.49
3663 4480 1.277326 CGATATCCACCACACGTGTG 58.723 55.000 36.13 36.13 45.23 3.82
3678 4495 4.444388 ACACGTGTGATATATTCGACATGC 59.556 41.667 22.71 0.00 31.25 4.06
3679 4496 4.444056 CACGTGTGATATATTCGACATGCA 59.556 41.667 7.58 0.00 31.25 3.96
3680 4497 4.444388 ACGTGTGATATATTCGACATGCAC 59.556 41.667 0.00 0.00 31.25 4.57
3681 4498 4.143326 CGTGTGATATATTCGACATGCACC 60.143 45.833 0.00 0.00 0.00 5.01
3682 4499 4.152402 GTGTGATATATTCGACATGCACCC 59.848 45.833 0.00 0.00 0.00 4.61
3683 4500 4.202305 TGTGATATATTCGACATGCACCCA 60.202 41.667 0.00 0.00 0.00 4.51
3684 4501 4.937620 GTGATATATTCGACATGCACCCAT 59.062 41.667 0.00 0.00 0.00 4.00
3685 4502 6.106003 GTGATATATTCGACATGCACCCATA 58.894 40.000 0.00 0.00 0.00 2.74
3686 4503 6.036083 GTGATATATTCGACATGCACCCATAC 59.964 42.308 0.00 0.00 0.00 2.39
3687 4504 2.708216 ATTCGACATGCACCCATACA 57.292 45.000 0.00 0.00 0.00 2.29
3688 4505 1.732941 TTCGACATGCACCCATACAC 58.267 50.000 0.00 0.00 0.00 2.90
3689 4506 0.107897 TCGACATGCACCCATACACC 60.108 55.000 0.00 0.00 0.00 4.16
3690 4507 1.428370 CGACATGCACCCATACACCG 61.428 60.000 0.00 0.00 0.00 4.94
3691 4508 0.392461 GACATGCACCCATACACCGT 60.392 55.000 0.00 0.00 0.00 4.83
3692 4509 0.676466 ACATGCACCCATACACCGTG 60.676 55.000 0.00 0.00 0.00 4.94
3693 4510 0.676466 CATGCACCCATACACCGTGT 60.676 55.000 9.58 9.58 0.00 4.49
3694 4511 0.676466 ATGCACCCATACACCGTGTG 60.676 55.000 14.66 0.50 39.75 3.82
3696 4513 1.573829 GCACCCATACACCGTGTGTG 61.574 60.000 18.71 18.71 46.84 3.82
3704 4521 2.203015 ACCGTGTGTGGTGTGAGC 60.203 61.111 0.00 0.00 41.85 4.26
3705 4522 2.203001 CCGTGTGTGGTGTGAGCA 60.203 61.111 0.00 0.00 0.00 4.26
3706 4523 2.246739 CCGTGTGTGGTGTGAGCAG 61.247 63.158 0.00 0.00 0.00 4.24
3707 4524 2.246739 CGTGTGTGGTGTGAGCAGG 61.247 63.158 0.00 0.00 0.00 4.85
3708 4525 1.146041 GTGTGTGGTGTGAGCAGGA 59.854 57.895 0.00 0.00 0.00 3.86
3709 4526 0.882042 GTGTGTGGTGTGAGCAGGAG 60.882 60.000 0.00 0.00 0.00 3.69
3710 4527 1.302033 GTGTGGTGTGAGCAGGAGG 60.302 63.158 0.00 0.00 0.00 4.30
3711 4528 2.359230 GTGGTGTGAGCAGGAGGC 60.359 66.667 0.00 0.00 45.30 4.70
3738 4555 4.269523 GGGCTGTGTGTGGGCAGA 62.270 66.667 0.00 0.00 34.87 4.26
3739 4556 2.980233 GGCTGTGTGTGGGCAGAC 60.980 66.667 0.00 0.00 39.11 3.51
3740 4557 2.203195 GCTGTGTGTGGGCAGACA 60.203 61.111 0.00 0.00 45.01 3.41
3741 4558 1.601759 GCTGTGTGTGGGCAGACAT 60.602 57.895 0.00 0.00 45.83 3.06
3742 4559 1.174712 GCTGTGTGTGGGCAGACATT 61.175 55.000 0.00 0.00 45.83 2.71
3743 4560 0.594602 CTGTGTGTGGGCAGACATTG 59.405 55.000 0.00 0.00 45.83 2.82
3744 4561 0.822944 TGTGTGTGGGCAGACATTGG 60.823 55.000 0.00 0.00 42.83 3.16
3745 4562 0.537143 GTGTGTGGGCAGACATTGGA 60.537 55.000 0.00 0.00 38.59 3.53
3746 4563 0.184692 TGTGTGGGCAGACATTGGAA 59.815 50.000 0.00 0.00 28.99 3.53
3747 4564 1.203038 TGTGTGGGCAGACATTGGAAT 60.203 47.619 0.00 0.00 28.99 3.01
3748 4565 1.895131 GTGTGGGCAGACATTGGAATT 59.105 47.619 0.00 0.00 0.00 2.17
3749 4566 1.894466 TGTGGGCAGACATTGGAATTG 59.106 47.619 0.00 0.00 0.00 2.32
3750 4567 0.896923 TGGGCAGACATTGGAATTGC 59.103 50.000 0.00 0.00 0.00 3.56
3751 4568 3.746900 GGCAGACATTGGAATTGCC 57.253 52.632 0.00 0.00 46.39 4.52
3760 4577 2.800516 TGGAATTGCCAACACGTGT 58.199 47.368 17.22 17.22 45.87 4.49
3761 4578 0.383590 TGGAATTGCCAACACGTGTG 59.616 50.000 24.16 15.76 45.87 3.82
3762 4579 0.318614 GGAATTGCCAACACGTGTGG 60.319 55.000 24.16 24.22 36.34 4.17
3763 4580 0.318614 GAATTGCCAACACGTGTGGG 60.319 55.000 33.93 33.93 42.20 4.61
3774 4591 3.131478 GTGTGGGCGCGGCTATTT 61.131 61.111 32.30 0.00 0.00 1.40
3775 4592 2.822255 TGTGGGCGCGGCTATTTC 60.822 61.111 32.30 15.22 0.00 2.17
3776 4593 3.937062 GTGGGCGCGGCTATTTCG 61.937 66.667 32.30 0.00 0.00 3.46
3777 4594 4.460683 TGGGCGCGGCTATTTCGT 62.461 61.111 32.30 0.00 0.00 3.85
3778 4595 3.937062 GGGCGCGGCTATTTCGTG 61.937 66.667 32.30 0.00 40.58 4.35
3793 4610 3.522731 GTGCCACACGCCCAACAA 61.523 61.111 0.00 0.00 36.24 2.83
3794 4611 3.215568 TGCCACACGCCCAACAAG 61.216 61.111 0.00 0.00 36.24 3.16
3795 4612 3.216292 GCCACACGCCCAACAAGT 61.216 61.111 0.00 0.00 0.00 3.16
3796 4613 1.894756 GCCACACGCCCAACAAGTA 60.895 57.895 0.00 0.00 0.00 2.24
3797 4614 1.946267 CCACACGCCCAACAAGTAC 59.054 57.895 0.00 0.00 0.00 2.73
3798 4615 0.534203 CCACACGCCCAACAAGTACT 60.534 55.000 0.00 0.00 0.00 2.73
3799 4616 1.270412 CCACACGCCCAACAAGTACTA 60.270 52.381 0.00 0.00 0.00 1.82
3800 4617 1.796459 CACACGCCCAACAAGTACTAC 59.204 52.381 0.00 0.00 0.00 2.73
3801 4618 1.690352 ACACGCCCAACAAGTACTACT 59.310 47.619 0.00 0.00 0.00 2.57
3802 4619 2.288640 ACACGCCCAACAAGTACTACTC 60.289 50.000 0.00 0.00 0.00 2.59
3803 4620 1.965643 ACGCCCAACAAGTACTACTCA 59.034 47.619 0.00 0.00 0.00 3.41
3804 4621 2.565834 ACGCCCAACAAGTACTACTCAT 59.434 45.455 0.00 0.00 0.00 2.90
3805 4622 3.187700 CGCCCAACAAGTACTACTCATC 58.812 50.000 0.00 0.00 0.00 2.92
3806 4623 3.119101 CGCCCAACAAGTACTACTCATCT 60.119 47.826 0.00 0.00 0.00 2.90
3807 4624 4.434520 GCCCAACAAGTACTACTCATCTC 58.565 47.826 0.00 0.00 0.00 2.75
3808 4625 4.680975 GCCCAACAAGTACTACTCATCTCC 60.681 50.000 0.00 0.00 0.00 3.71
3809 4626 4.466370 CCCAACAAGTACTACTCATCTCCA 59.534 45.833 0.00 0.00 0.00 3.86
3810 4627 5.411781 CCAACAAGTACTACTCATCTCCAC 58.588 45.833 0.00 0.00 0.00 4.02
3811 4628 5.411781 CAACAAGTACTACTCATCTCCACC 58.588 45.833 0.00 0.00 0.00 4.61
3812 4629 4.024670 ACAAGTACTACTCATCTCCACCC 58.975 47.826 0.00 0.00 0.00 4.61
3813 4630 3.315880 AGTACTACTCATCTCCACCCC 57.684 52.381 0.00 0.00 0.00 4.95
3814 4631 1.955080 GTACTACTCATCTCCACCCCG 59.045 57.143 0.00 0.00 0.00 5.73
3815 4632 1.043673 ACTACTCATCTCCACCCCGC 61.044 60.000 0.00 0.00 0.00 6.13
3816 4633 2.076622 CTACTCATCTCCACCCCGCG 62.077 65.000 0.00 0.00 0.00 6.46
3817 4634 4.899239 CTCATCTCCACCCCGCGC 62.899 72.222 0.00 0.00 0.00 6.86
3841 4658 2.153039 GCACGAAGCAAAAATGCCC 58.847 52.632 0.00 0.00 44.79 5.36
3842 4659 0.599728 GCACGAAGCAAAAATGCCCA 60.600 50.000 0.00 0.00 44.79 5.36
3843 4660 1.139163 CACGAAGCAAAAATGCCCAC 58.861 50.000 0.00 0.00 34.90 4.61
3844 4661 0.749649 ACGAAGCAAAAATGCCCACA 59.250 45.000 0.00 0.00 34.90 4.17
3845 4662 1.139163 CGAAGCAAAAATGCCCACAC 58.861 50.000 0.00 0.00 34.90 3.82
3846 4663 1.139163 GAAGCAAAAATGCCCACACG 58.861 50.000 0.00 0.00 34.90 4.49
3847 4664 0.463620 AAGCAAAAATGCCCACACGT 59.536 45.000 0.00 0.00 34.90 4.49
3848 4665 0.031994 AGCAAAAATGCCCACACGTC 59.968 50.000 0.00 0.00 34.90 4.34
3849 4666 0.943835 GCAAAAATGCCCACACGTCC 60.944 55.000 0.00 0.00 0.00 4.79
3850 4667 0.673437 CAAAAATGCCCACACGTCCT 59.327 50.000 0.00 0.00 0.00 3.85
3851 4668 0.673437 AAAAATGCCCACACGTCCTG 59.327 50.000 0.00 0.00 0.00 3.86
3852 4669 1.178534 AAAATGCCCACACGTCCTGG 61.179 55.000 2.19 2.19 0.00 4.45
3853 4670 4.722700 ATGCCCACACGTCCTGGC 62.723 66.667 10.94 10.94 44.27 4.85
3871 4688 3.247033 CGCAGCTACGTTAGGTACC 57.753 57.895 2.73 2.73 34.67 3.34
3872 4689 0.248784 CGCAGCTACGTTAGGTACCC 60.249 60.000 8.74 0.00 34.67 3.69
3873 4690 0.103755 GCAGCTACGTTAGGTACCCC 59.896 60.000 8.74 0.00 34.67 4.95
3874 4691 0.383231 CAGCTACGTTAGGTACCCCG 59.617 60.000 8.74 11.37 34.67 5.73
3875 4692 1.066422 GCTACGTTAGGTACCCCGC 59.934 63.158 8.74 0.00 35.12 6.13
3876 4693 1.356624 CTACGTTAGGTACCCCGCG 59.643 63.158 8.74 12.79 35.12 6.46
3877 4694 2.063541 CTACGTTAGGTACCCCGCGG 62.064 65.000 21.04 21.04 35.12 6.46
3888 4705 2.203015 CCCGCGGGATGACGATTT 60.203 61.111 41.82 0.00 37.50 2.17
3889 4706 1.068417 CCCGCGGGATGACGATTTA 59.932 57.895 41.82 0.00 37.50 1.40
3890 4707 0.944311 CCCGCGGGATGACGATTTAG 60.944 60.000 41.82 6.56 37.50 1.85
3891 4708 0.249322 CCGCGGGATGACGATTTAGT 60.249 55.000 20.10 0.00 35.47 2.24
3892 4709 1.567504 CGCGGGATGACGATTTAGTT 58.432 50.000 0.00 0.00 35.47 2.24
3893 4710 1.257936 CGCGGGATGACGATTTAGTTG 59.742 52.381 0.00 0.00 35.47 3.16
3894 4711 1.003866 GCGGGATGACGATTTAGTTGC 60.004 52.381 0.00 0.00 35.47 4.17
3895 4712 1.597663 CGGGATGACGATTTAGTTGCC 59.402 52.381 0.00 0.00 35.47 4.52
3896 4713 2.639065 GGGATGACGATTTAGTTGCCA 58.361 47.619 0.00 0.00 0.00 4.92
3897 4714 3.214328 GGGATGACGATTTAGTTGCCAT 58.786 45.455 0.00 0.00 0.00 4.40
3898 4715 3.251004 GGGATGACGATTTAGTTGCCATC 59.749 47.826 0.00 0.00 0.00 3.51
3899 4716 3.251004 GGATGACGATTTAGTTGCCATCC 59.749 47.826 0.00 0.00 40.90 3.51
3900 4717 3.627395 TGACGATTTAGTTGCCATCCT 57.373 42.857 0.00 0.00 0.00 3.24
3901 4718 3.270027 TGACGATTTAGTTGCCATCCTG 58.730 45.455 0.00 0.00 0.00 3.86
3902 4719 3.055458 TGACGATTTAGTTGCCATCCTGA 60.055 43.478 0.00 0.00 0.00 3.86
3903 4720 4.130118 GACGATTTAGTTGCCATCCTGAT 58.870 43.478 0.00 0.00 0.00 2.90
3904 4721 4.526970 ACGATTTAGTTGCCATCCTGATT 58.473 39.130 0.00 0.00 0.00 2.57
3905 4722 4.336433 ACGATTTAGTTGCCATCCTGATTG 59.664 41.667 0.00 0.00 0.00 2.67
3906 4723 4.261322 CGATTTAGTTGCCATCCTGATTGG 60.261 45.833 0.00 0.00 37.10 3.16
3922 4739 4.631131 TGATTGGCAGATGTAGTTATCCG 58.369 43.478 0.00 0.00 0.00 4.18
3923 4740 3.469008 TTGGCAGATGTAGTTATCCGG 57.531 47.619 0.00 0.00 0.00 5.14
3924 4741 1.691976 TGGCAGATGTAGTTATCCGGG 59.308 52.381 0.00 0.00 0.00 5.73
3925 4742 1.968493 GGCAGATGTAGTTATCCGGGA 59.032 52.381 0.00 0.00 0.00 5.14
3926 4743 2.567615 GGCAGATGTAGTTATCCGGGAT 59.432 50.000 15.04 15.04 0.00 3.85
3927 4744 3.589988 GCAGATGTAGTTATCCGGGATG 58.410 50.000 19.82 1.18 0.00 3.51
3928 4745 3.617531 GCAGATGTAGTTATCCGGGATGG 60.618 52.174 19.82 0.00 40.09 3.51
3929 4746 2.567615 AGATGTAGTTATCCGGGATGGC 59.432 50.000 19.82 11.51 37.80 4.40
3930 4747 1.796017 TGTAGTTATCCGGGATGGCA 58.204 50.000 19.82 7.99 37.80 4.92
3931 4748 2.120312 TGTAGTTATCCGGGATGGCAA 58.880 47.619 19.82 3.14 37.80 4.52
3932 4749 2.708861 TGTAGTTATCCGGGATGGCAAT 59.291 45.455 19.82 5.46 37.80 3.56
3933 4750 3.137544 TGTAGTTATCCGGGATGGCAATT 59.862 43.478 19.82 5.62 37.80 2.32
3934 4751 2.586425 AGTTATCCGGGATGGCAATTG 58.414 47.619 19.82 0.00 37.80 2.32
3935 4752 2.091885 AGTTATCCGGGATGGCAATTGT 60.092 45.455 19.82 0.00 37.80 2.71
3936 4753 3.137544 AGTTATCCGGGATGGCAATTGTA 59.862 43.478 19.82 0.00 37.80 2.41
3937 4754 2.276732 ATCCGGGATGGCAATTGTAG 57.723 50.000 9.17 0.00 37.80 2.74
3938 4755 0.916086 TCCGGGATGGCAATTGTAGT 59.084 50.000 7.40 0.00 37.80 2.73
3939 4756 1.283613 TCCGGGATGGCAATTGTAGTT 59.716 47.619 7.40 0.00 37.80 2.24
3940 4757 1.405105 CCGGGATGGCAATTGTAGTTG 59.595 52.381 7.40 0.00 0.00 3.16
3941 4758 2.091541 CGGGATGGCAATTGTAGTTGT 58.908 47.619 7.40 0.00 0.00 3.32
3942 4759 3.275143 CGGGATGGCAATTGTAGTTGTA 58.725 45.455 7.40 0.00 0.00 2.41
3943 4760 3.692101 CGGGATGGCAATTGTAGTTGTAA 59.308 43.478 7.40 0.00 0.00 2.41
3944 4761 4.156922 CGGGATGGCAATTGTAGTTGTAAA 59.843 41.667 7.40 0.00 0.00 2.01
3945 4762 5.336055 CGGGATGGCAATTGTAGTTGTAAAA 60.336 40.000 7.40 0.00 0.00 1.52
3946 4763 6.099341 GGGATGGCAATTGTAGTTGTAAAAG 58.901 40.000 7.40 0.00 0.00 2.27
3947 4764 5.576774 GGATGGCAATTGTAGTTGTAAAAGC 59.423 40.000 7.40 0.00 0.00 3.51
3948 4765 5.521906 TGGCAATTGTAGTTGTAAAAGCA 57.478 34.783 7.40 0.00 0.00 3.91
3949 4766 6.095432 TGGCAATTGTAGTTGTAAAAGCAT 57.905 33.333 7.40 0.00 0.00 3.79
3950 4767 5.925397 TGGCAATTGTAGTTGTAAAAGCATG 59.075 36.000 7.40 0.00 0.00 4.06
3951 4768 5.348451 GGCAATTGTAGTTGTAAAAGCATGG 59.652 40.000 7.40 0.00 0.00 3.66
3952 4769 5.163963 GCAATTGTAGTTGTAAAAGCATGGC 60.164 40.000 7.40 0.00 0.00 4.40
3953 4770 5.720371 ATTGTAGTTGTAAAAGCATGGCA 57.280 34.783 0.00 0.00 0.00 4.92
3954 4771 5.521906 TTGTAGTTGTAAAAGCATGGCAA 57.478 34.783 0.00 0.00 0.00 4.52
3955 4772 4.865776 TGTAGTTGTAAAAGCATGGCAAC 58.134 39.130 0.00 0.00 39.52 4.17
3957 4774 4.243007 AGTTGTAAAAGCATGGCAACTC 57.757 40.909 0.00 0.00 44.10 3.01
3958 4775 3.891366 AGTTGTAAAAGCATGGCAACTCT 59.109 39.130 0.00 0.00 44.10 3.24
3959 4776 5.070001 AGTTGTAAAAGCATGGCAACTCTA 58.930 37.500 0.00 0.00 44.10 2.43
3960 4777 5.711976 AGTTGTAAAAGCATGGCAACTCTAT 59.288 36.000 0.00 0.00 44.10 1.98
3961 4778 5.818136 TGTAAAAGCATGGCAACTCTATC 57.182 39.130 0.00 0.00 37.61 2.08
3962 4779 5.500234 TGTAAAAGCATGGCAACTCTATCT 58.500 37.500 0.00 0.00 37.61 1.98
3963 4780 4.978083 AAAAGCATGGCAACTCTATCTG 57.022 40.909 0.00 0.00 37.61 2.90
3964 4781 3.641434 AAGCATGGCAACTCTATCTGT 57.359 42.857 0.00 0.00 37.61 3.41
3965 4782 3.641434 AGCATGGCAACTCTATCTGTT 57.359 42.857 0.00 0.00 37.61 3.16
3966 4783 3.960571 AGCATGGCAACTCTATCTGTTT 58.039 40.909 0.00 0.00 37.61 2.83
3967 4784 4.338879 AGCATGGCAACTCTATCTGTTTT 58.661 39.130 0.00 0.00 37.61 2.43
3968 4785 4.157289 AGCATGGCAACTCTATCTGTTTTG 59.843 41.667 0.00 0.00 37.61 2.44
3969 4786 4.676196 GCATGGCAACTCTATCTGTTTTGG 60.676 45.833 0.00 0.00 37.61 3.28
3970 4787 4.098914 TGGCAACTCTATCTGTTTTGGT 57.901 40.909 0.00 0.00 37.61 3.67
3971 4788 4.469657 TGGCAACTCTATCTGTTTTGGTT 58.530 39.130 0.00 0.00 37.61 3.67
3972 4789 5.626142 TGGCAACTCTATCTGTTTTGGTTA 58.374 37.500 0.00 0.00 37.61 2.85
3973 4790 6.065374 TGGCAACTCTATCTGTTTTGGTTAA 58.935 36.000 0.00 0.00 37.61 2.01
3974 4791 6.016610 TGGCAACTCTATCTGTTTTGGTTAAC 60.017 38.462 0.00 0.00 37.61 2.01
3975 4792 6.206829 GGCAACTCTATCTGTTTTGGTTAACT 59.793 38.462 5.42 0.00 0.00 2.24
3976 4793 7.389607 GGCAACTCTATCTGTTTTGGTTAACTA 59.610 37.037 5.42 0.00 0.00 2.24
3977 4794 8.947115 GCAACTCTATCTGTTTTGGTTAACTAT 58.053 33.333 5.42 0.00 0.00 2.12
3988 4805 9.796180 TGTTTTGGTTAACTATAGTTACCATGT 57.204 29.630 28.45 10.44 39.92 3.21
4008 4825 7.950512 CCATGTCTAATTTATGGTAATTGCCA 58.049 34.615 18.16 18.16 43.48 4.92
4009 4826 7.867403 CCATGTCTAATTTATGGTAATTGCCAC 59.133 37.037 18.22 2.38 41.94 5.01
4010 4827 7.946381 TGTCTAATTTATGGTAATTGCCACA 57.054 32.000 18.22 2.74 41.94 4.17
4011 4828 8.532186 TGTCTAATTTATGGTAATTGCCACAT 57.468 30.769 18.22 5.65 41.94 3.21
4012 4829 8.412456 TGTCTAATTTATGGTAATTGCCACATG 58.588 33.333 18.22 4.63 41.94 3.21
4013 4830 8.413229 GTCTAATTTATGGTAATTGCCACATGT 58.587 33.333 18.22 4.50 41.94 3.21
4014 4831 9.634021 TCTAATTTATGGTAATTGCCACATGTA 57.366 29.630 18.22 3.45 41.94 2.29
4017 4834 9.762933 AATTTATGGTAATTGCCACATGTAATC 57.237 29.630 18.22 0.00 41.94 1.75
4018 4835 7.888250 TTATGGTAATTGCCACATGTAATCA 57.112 32.000 18.22 0.00 41.94 2.57
4019 4836 6.788598 ATGGTAATTGCCACATGTAATCAA 57.211 33.333 18.22 3.54 41.94 2.57
4020 4837 6.596309 TGGTAATTGCCACATGTAATCAAA 57.404 33.333 11.68 0.00 32.81 2.69
4021 4838 6.393990 TGGTAATTGCCACATGTAATCAAAC 58.606 36.000 11.68 0.00 32.81 2.93
4022 4839 5.810074 GGTAATTGCCACATGTAATCAAACC 59.190 40.000 7.82 5.24 0.00 3.27
4023 4840 5.743636 AATTGCCACATGTAATCAAACCT 57.256 34.783 0.00 0.00 0.00 3.50
4024 4841 5.743636 ATTGCCACATGTAATCAAACCTT 57.256 34.783 0.00 0.00 0.00 3.50
4025 4842 6.849085 ATTGCCACATGTAATCAAACCTTA 57.151 33.333 0.00 0.00 0.00 2.69
4026 4843 5.895636 TGCCACATGTAATCAAACCTTAG 57.104 39.130 0.00 0.00 0.00 2.18
4027 4844 5.321102 TGCCACATGTAATCAAACCTTAGT 58.679 37.500 0.00 0.00 0.00 2.24
4028 4845 5.772672 TGCCACATGTAATCAAACCTTAGTT 59.227 36.000 0.00 0.00 38.03 2.24
4029 4846 6.092748 GCCACATGTAATCAAACCTTAGTTG 58.907 40.000 0.00 0.00 35.97 3.16
4030 4847 6.092748 CCACATGTAATCAAACCTTAGTTGC 58.907 40.000 0.00 0.00 35.97 4.17
4031 4848 6.092748 CACATGTAATCAAACCTTAGTTGCC 58.907 40.000 0.00 0.00 35.97 4.52
4032 4849 5.106317 ACATGTAATCAAACCTTAGTTGCCG 60.106 40.000 0.00 0.00 35.97 5.69
4033 4850 4.391155 TGTAATCAAACCTTAGTTGCCGT 58.609 39.130 0.00 0.00 35.97 5.68
4034 4851 3.915437 AATCAAACCTTAGTTGCCGTG 57.085 42.857 0.00 0.00 35.97 4.94
4035 4852 2.335316 TCAAACCTTAGTTGCCGTGT 57.665 45.000 0.00 0.00 35.97 4.49
4036 4853 1.944024 TCAAACCTTAGTTGCCGTGTG 59.056 47.619 0.00 0.00 35.97 3.82
4037 4854 1.673920 CAAACCTTAGTTGCCGTGTGT 59.326 47.619 0.00 0.00 35.97 3.72
4038 4855 1.305201 AACCTTAGTTGCCGTGTGTG 58.695 50.000 0.00 0.00 33.97 3.82
4039 4856 0.466543 ACCTTAGTTGCCGTGTGTGA 59.533 50.000 0.00 0.00 0.00 3.58
4040 4857 1.071699 ACCTTAGTTGCCGTGTGTGAT 59.928 47.619 0.00 0.00 0.00 3.06
4041 4858 2.151202 CCTTAGTTGCCGTGTGTGATT 58.849 47.619 0.00 0.00 0.00 2.57
4042 4859 3.244284 ACCTTAGTTGCCGTGTGTGATTA 60.244 43.478 0.00 0.00 0.00 1.75
4043 4860 3.749088 CCTTAGTTGCCGTGTGTGATTAA 59.251 43.478 0.00 0.00 0.00 1.40
4044 4861 4.378046 CCTTAGTTGCCGTGTGTGATTAAC 60.378 45.833 0.00 0.00 0.00 2.01
4045 4862 2.846193 AGTTGCCGTGTGTGATTAACT 58.154 42.857 0.00 0.00 0.00 2.24
4046 4863 3.997762 AGTTGCCGTGTGTGATTAACTA 58.002 40.909 0.00 0.00 0.00 2.24
4047 4864 3.744426 AGTTGCCGTGTGTGATTAACTAC 59.256 43.478 0.00 0.00 0.00 2.73
4048 4865 3.671008 TGCCGTGTGTGATTAACTACT 57.329 42.857 0.00 0.00 0.00 2.57
4049 4866 3.997762 TGCCGTGTGTGATTAACTACTT 58.002 40.909 0.00 0.00 0.00 2.24
4050 4867 3.743911 TGCCGTGTGTGATTAACTACTTG 59.256 43.478 0.00 0.00 0.00 3.16
4051 4868 3.424433 GCCGTGTGTGATTAACTACTTGC 60.424 47.826 0.00 0.00 0.00 4.01
4052 4869 3.124636 CCGTGTGTGATTAACTACTTGCC 59.875 47.826 0.00 0.00 0.00 4.52
4053 4870 3.743911 CGTGTGTGATTAACTACTTGCCA 59.256 43.478 0.00 0.00 0.00 4.92
4054 4871 4.377022 CGTGTGTGATTAACTACTTGCCAC 60.377 45.833 0.00 0.00 0.00 5.01
4055 4872 3.743911 TGTGTGATTAACTACTTGCCACG 59.256 43.478 0.00 0.00 0.00 4.94
4056 4873 3.744426 GTGTGATTAACTACTTGCCACGT 59.256 43.478 0.00 0.00 0.00 4.49
4057 4874 4.925054 GTGTGATTAACTACTTGCCACGTA 59.075 41.667 0.00 0.00 0.00 3.57
4072 4889 3.921677 CCACGTATGGTCAAACAGTAGT 58.078 45.455 0.00 0.00 41.64 2.73
4073 4890 4.312443 CCACGTATGGTCAAACAGTAGTT 58.688 43.478 0.00 0.00 41.64 2.24
4076 4893 3.124636 CGTATGGTCAAACAGTAGTTGCC 59.875 47.826 0.00 0.00 38.17 4.52
4077 4894 2.719531 TGGTCAAACAGTAGTTGCCA 57.280 45.000 0.00 0.00 38.17 4.92
4078 4895 3.222173 TGGTCAAACAGTAGTTGCCAT 57.778 42.857 0.00 0.00 38.17 4.40
4079 4896 2.884012 TGGTCAAACAGTAGTTGCCATG 59.116 45.455 0.00 0.00 38.17 3.66
4080 4897 2.884639 GGTCAAACAGTAGTTGCCATGT 59.115 45.455 0.00 0.00 38.17 3.21
4081 4898 3.304659 GGTCAAACAGTAGTTGCCATGTG 60.305 47.826 0.00 0.00 38.17 3.21
4082 4899 3.315191 GTCAAACAGTAGTTGCCATGTGT 59.685 43.478 0.00 0.00 38.17 3.72
4083 4900 3.563808 TCAAACAGTAGTTGCCATGTGTC 59.436 43.478 0.00 0.00 38.17 3.67
4084 4901 3.492102 AACAGTAGTTGCCATGTGTCT 57.508 42.857 0.00 0.00 36.39 3.41
4085 4902 3.492102 ACAGTAGTTGCCATGTGTCTT 57.508 42.857 0.00 0.00 0.00 3.01
4086 4903 3.820557 ACAGTAGTTGCCATGTGTCTTT 58.179 40.909 0.00 0.00 0.00 2.52
4087 4904 4.968259 ACAGTAGTTGCCATGTGTCTTTA 58.032 39.130 0.00 0.00 0.00 1.85
4088 4905 4.755123 ACAGTAGTTGCCATGTGTCTTTAC 59.245 41.667 0.00 0.00 0.00 2.01
4089 4906 4.154195 CAGTAGTTGCCATGTGTCTTTACC 59.846 45.833 0.00 0.00 0.00 2.85
4090 4907 3.508845 AGTTGCCATGTGTCTTTACCT 57.491 42.857 0.00 0.00 0.00 3.08
4092 4909 4.579869 AGTTGCCATGTGTCTTTACCTAG 58.420 43.478 0.00 0.00 0.00 3.02
4093 4910 4.041691 AGTTGCCATGTGTCTTTACCTAGT 59.958 41.667 0.00 0.00 0.00 2.57
4094 4911 4.634012 TGCCATGTGTCTTTACCTAGTT 57.366 40.909 0.00 0.00 0.00 2.24
4095 4912 4.323417 TGCCATGTGTCTTTACCTAGTTG 58.677 43.478 0.00 0.00 0.00 3.16
4096 4913 3.127030 GCCATGTGTCTTTACCTAGTTGC 59.873 47.826 0.00 0.00 0.00 4.17
4097 4914 3.689649 CCATGTGTCTTTACCTAGTTGCC 59.310 47.826 0.00 0.00 0.00 4.52
4098 4915 4.323417 CATGTGTCTTTACCTAGTTGCCA 58.677 43.478 0.00 0.00 0.00 4.92
4099 4916 3.735591 TGTGTCTTTACCTAGTTGCCAC 58.264 45.455 0.00 0.00 0.00 5.01
4102 4919 2.735134 GTCTTTACCTAGTTGCCACGTG 59.265 50.000 9.08 9.08 0.00 4.49
4103 4920 2.366266 TCTTTACCTAGTTGCCACGTGT 59.634 45.455 15.65 0.00 0.00 4.49
4104 4921 2.157834 TTACCTAGTTGCCACGTGTG 57.842 50.000 15.65 7.24 0.00 3.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 3.485877 GCAGCGTGCCTGTTAAGAATAAG 60.486 47.826 0.00 0.00 43.71 1.73
26 27 1.080569 GTGGTGGCAATTTCGGCAG 60.081 57.895 0.00 0.00 42.85 4.85
52 53 1.207329 GAGCTACGTTCCTCCCAATGT 59.793 52.381 0.00 0.00 0.00 2.71
53 54 1.482593 AGAGCTACGTTCCTCCCAATG 59.517 52.381 0.00 0.00 0.00 2.82
54 55 1.867363 AGAGCTACGTTCCTCCCAAT 58.133 50.000 0.00 0.00 0.00 3.16
124 125 3.352338 CTTTCGACGACGGAGGGGG 62.352 68.421 7.55 0.00 40.21 5.40
127 129 2.874780 CGCTTTCGACGACGGAGG 60.875 66.667 7.55 0.00 40.21 4.30
136 138 1.078709 CTCTCATTTGCCGCTTTCGA 58.921 50.000 0.00 0.00 38.10 3.71
139 141 1.003580 TCCTCTCTCATTTGCCGCTTT 59.996 47.619 0.00 0.00 0.00 3.51
146 148 2.757868 AGGTCTCGTCCTCTCTCATTTG 59.242 50.000 0.00 0.00 31.32 2.32
165 167 1.729470 CCCATCGACGAGTCCTCAGG 61.729 65.000 3.01 0.00 0.00 3.86
176 178 2.574955 CGATCCCCCTCCCATCGAC 61.575 68.421 0.00 0.00 41.61 4.20
180 182 0.104462 TTCATCGATCCCCCTCCCAT 60.104 55.000 0.00 0.00 0.00 4.00
185 204 1.696336 CACTGATTCATCGATCCCCCT 59.304 52.381 0.00 0.00 0.00 4.79
186 205 1.271054 CCACTGATTCATCGATCCCCC 60.271 57.143 0.00 0.00 0.00 5.40
189 208 7.361542 CCATATTTTCCACTGATTCATCGATCC 60.362 40.741 0.00 0.00 0.00 3.36
191 210 7.000472 ACCATATTTTCCACTGATTCATCGAT 59.000 34.615 0.00 0.00 0.00 3.59
193 212 6.624352 ACCATATTTTCCACTGATTCATCG 57.376 37.500 0.00 0.00 0.00 3.84
195 214 7.838696 TGGTAACCATATTTTCCACTGATTCAT 59.161 33.333 0.00 0.00 0.00 2.57
200 219 6.381498 TCTGGTAACCATATTTTCCACTGA 57.619 37.500 0.00 0.00 30.82 3.41
203 222 5.751586 TCCTCTGGTAACCATATTTTCCAC 58.248 41.667 0.00 0.00 30.82 4.02
230 249 9.401058 ACCCAAAATGAACATGAAACATTAAAA 57.599 25.926 0.00 0.00 34.48 1.52
231 250 8.970859 ACCCAAAATGAACATGAAACATTAAA 57.029 26.923 0.00 0.00 34.48 1.52
232 251 7.383572 CGACCCAAAATGAACATGAAACATTAA 59.616 33.333 0.00 0.00 34.48 1.40
233 252 6.865726 CGACCCAAAATGAACATGAAACATTA 59.134 34.615 0.00 0.00 34.48 1.90
234 253 5.695816 CGACCCAAAATGAACATGAAACATT 59.304 36.000 0.00 5.40 36.07 2.71
235 254 5.221422 ACGACCCAAAATGAACATGAAACAT 60.221 36.000 0.00 0.00 0.00 2.71
243 262 5.049060 CAGATGTTACGACCCAAAATGAACA 60.049 40.000 0.00 0.00 0.00 3.18
251 270 6.711194 TGTAAATTTCAGATGTTACGACCCAA 59.289 34.615 0.00 0.00 30.61 4.12
253 272 6.183360 CCTGTAAATTTCAGATGTTACGACCC 60.183 42.308 15.13 0.00 35.20 4.46
264 283 9.261180 CGAAATATAGCTCCTGTAAATTTCAGA 57.739 33.333 15.13 0.97 33.53 3.27
266 285 9.042008 GTCGAAATATAGCTCCTGTAAATTTCA 57.958 33.333 0.00 0.00 33.53 2.69
267 286 9.042008 TGTCGAAATATAGCTCCTGTAAATTTC 57.958 33.333 0.00 0.00 0.00 2.17
268 287 8.827677 GTGTCGAAATATAGCTCCTGTAAATTT 58.172 33.333 0.00 0.00 0.00 1.82
269 288 8.204836 AGTGTCGAAATATAGCTCCTGTAAATT 58.795 33.333 0.00 0.00 0.00 1.82
270 289 7.653713 CAGTGTCGAAATATAGCTCCTGTAAAT 59.346 37.037 0.00 0.00 0.00 1.40
271 290 6.978659 CAGTGTCGAAATATAGCTCCTGTAAA 59.021 38.462 0.00 0.00 0.00 2.01
272 291 6.461092 CCAGTGTCGAAATATAGCTCCTGTAA 60.461 42.308 0.00 0.00 0.00 2.41
273 292 5.009710 CCAGTGTCGAAATATAGCTCCTGTA 59.990 44.000 0.00 0.00 0.00 2.74
274 293 4.202161 CCAGTGTCGAAATATAGCTCCTGT 60.202 45.833 0.00 0.00 0.00 4.00
275 294 4.202161 ACCAGTGTCGAAATATAGCTCCTG 60.202 45.833 0.00 0.00 0.00 3.86
276 295 3.961408 ACCAGTGTCGAAATATAGCTCCT 59.039 43.478 0.00 0.00 0.00 3.69
277 296 4.038162 AGACCAGTGTCGAAATATAGCTCC 59.962 45.833 0.00 0.00 46.51 4.70
278 297 4.979197 CAGACCAGTGTCGAAATATAGCTC 59.021 45.833 0.00 0.00 46.51 4.09
279 298 4.645136 TCAGACCAGTGTCGAAATATAGCT 59.355 41.667 0.00 0.00 46.51 3.32
280 299 4.933330 TCAGACCAGTGTCGAAATATAGC 58.067 43.478 0.00 0.00 46.51 2.97
281 300 6.137794 ACTCAGACCAGTGTCGAAATATAG 57.862 41.667 0.00 0.00 46.51 1.31
282 301 7.720074 AGATACTCAGACCAGTGTCGAAATATA 59.280 37.037 0.00 0.00 46.51 0.86
283 302 6.547880 AGATACTCAGACCAGTGTCGAAATAT 59.452 38.462 0.00 0.00 46.51 1.28
284 303 5.886474 AGATACTCAGACCAGTGTCGAAATA 59.114 40.000 0.00 0.00 46.51 1.40
285 304 4.707448 AGATACTCAGACCAGTGTCGAAAT 59.293 41.667 0.00 0.00 46.51 2.17
286 305 4.079970 AGATACTCAGACCAGTGTCGAAA 58.920 43.478 0.00 0.00 46.51 3.46
287 306 3.687125 AGATACTCAGACCAGTGTCGAA 58.313 45.455 0.00 0.00 46.51 3.71
288 307 3.351794 AGATACTCAGACCAGTGTCGA 57.648 47.619 0.00 0.00 46.51 4.20
289 308 5.562506 TTAAGATACTCAGACCAGTGTCG 57.437 43.478 0.00 0.00 46.51 4.35
290 309 6.758886 CCAATTAAGATACTCAGACCAGTGTC 59.241 42.308 0.00 0.00 42.09 3.67
291 310 6.440647 TCCAATTAAGATACTCAGACCAGTGT 59.559 38.462 0.00 0.00 0.00 3.55
292 311 6.758886 GTCCAATTAAGATACTCAGACCAGTG 59.241 42.308 0.00 0.00 0.00 3.66
293 312 6.405953 CGTCCAATTAAGATACTCAGACCAGT 60.406 42.308 0.00 0.00 0.00 4.00
294 313 5.980116 CGTCCAATTAAGATACTCAGACCAG 59.020 44.000 0.00 0.00 0.00 4.00
295 314 5.681437 GCGTCCAATTAAGATACTCAGACCA 60.681 44.000 0.00 0.00 0.00 4.02
296 315 4.745620 GCGTCCAATTAAGATACTCAGACC 59.254 45.833 0.00 0.00 0.00 3.85
297 316 5.348986 TGCGTCCAATTAAGATACTCAGAC 58.651 41.667 0.00 0.00 0.00 3.51
298 317 5.592104 TGCGTCCAATTAAGATACTCAGA 57.408 39.130 0.00 0.00 0.00 3.27
299 318 5.178252 CCATGCGTCCAATTAAGATACTCAG 59.822 44.000 0.00 0.00 0.00 3.35
300 319 5.056480 CCATGCGTCCAATTAAGATACTCA 58.944 41.667 0.00 0.00 0.00 3.41
301 320 4.083802 GCCATGCGTCCAATTAAGATACTC 60.084 45.833 0.00 0.00 0.00 2.59
302 321 3.815401 GCCATGCGTCCAATTAAGATACT 59.185 43.478 0.00 0.00 0.00 2.12
303 322 3.058224 GGCCATGCGTCCAATTAAGATAC 60.058 47.826 0.00 0.00 0.00 2.24
304 323 3.146066 GGCCATGCGTCCAATTAAGATA 58.854 45.455 0.00 0.00 0.00 1.98
305 324 1.956477 GGCCATGCGTCCAATTAAGAT 59.044 47.619 0.00 0.00 0.00 2.40
306 325 1.340502 TGGCCATGCGTCCAATTAAGA 60.341 47.619 0.00 0.00 0.00 2.10
307 326 1.102154 TGGCCATGCGTCCAATTAAG 58.898 50.000 0.00 0.00 0.00 1.85
308 327 1.550327 TTGGCCATGCGTCCAATTAA 58.450 45.000 6.09 0.00 37.43 1.40
309 328 3.272925 TTGGCCATGCGTCCAATTA 57.727 47.368 6.09 0.00 37.43 1.40
310 329 4.110319 TTGGCCATGCGTCCAATT 57.890 50.000 6.09 0.00 37.43 2.32
311 330 4.360643 ATTGGCCATGCGTCCAAT 57.639 50.000 6.09 15.20 45.12 3.16
312 331 2.349672 CCATTGGCCATGCGTCCAA 61.350 57.895 6.09 12.61 45.35 3.53
313 332 2.755064 CCATTGGCCATGCGTCCA 60.755 61.111 6.09 0.00 0.00 4.02
314 333 3.530260 CCCATTGGCCATGCGTCC 61.530 66.667 6.09 0.00 0.00 4.79
602 621 0.108138 CCAGTAACGCCAGCTTAGCT 60.108 55.000 0.00 0.00 40.77 3.32
613 695 6.864685 TGTACACTTCAAGTTATCCAGTAACG 59.135 38.462 0.00 0.00 45.88 3.18
619 701 8.514330 AAAGTTTGTACACTTCAAGTTATCCA 57.486 30.769 0.00 0.00 35.87 3.41
640 722 7.534852 TGGCATGGATATATTAGGGAAAAAGT 58.465 34.615 0.00 0.00 0.00 2.66
641 723 7.123247 CCTGGCATGGATATATTAGGGAAAAAG 59.877 40.741 0.00 0.00 0.00 2.27
642 724 6.953520 CCTGGCATGGATATATTAGGGAAAAA 59.046 38.462 0.00 0.00 0.00 1.94
761 843 8.954350 CACAGAAACTATTCCTGATCAATCTTT 58.046 33.333 0.00 0.00 36.12 2.52
763 845 7.551974 CACACAGAAACTATTCCTGATCAATCT 59.448 37.037 0.00 0.00 36.12 2.40
1077 1178 0.252375 AGGCCACCCATTGCAAGATT 60.252 50.000 5.01 0.00 0.00 2.40
1204 1419 7.932120 TTTGGTAAAACATATTGTGAAACGG 57.068 32.000 0.00 0.00 42.39 4.44
1425 1893 5.416013 AGCCCTTTAGTTTACATCTTGCTTC 59.584 40.000 0.00 0.00 0.00 3.86
1457 1934 1.040646 TCCTCACTCGCCACCATATC 58.959 55.000 0.00 0.00 0.00 1.63
1573 2076 1.210155 GACGTTGCCTGCATGGAAC 59.790 57.895 14.84 14.84 38.35 3.62
1658 2221 5.474825 AGACTAACAAGCTAAGCAAGAGAC 58.525 41.667 0.00 0.00 0.00 3.36
1769 2343 1.153628 GAAGAGCGCCACCACGTAT 60.154 57.895 2.29 0.00 34.88 3.06
1862 2436 4.707105 TGTAGATGGTTTCGATGATGCAT 58.293 39.130 0.00 0.00 0.00 3.96
1910 2484 2.297880 TGTGAGTACCTTCGCTTGCTTA 59.702 45.455 0.00 0.00 0.00 3.09
1919 2493 3.060602 GCAGAGTTGTGTGAGTACCTTC 58.939 50.000 0.00 0.00 0.00 3.46
2024 2690 0.105039 GGAGGATCTTCGCCGTGAAT 59.895 55.000 0.00 0.00 35.63 2.57
2165 2831 3.472943 GATGATGCTGAGGGGCGCT 62.473 63.158 7.64 2.69 34.52 5.92
2238 2925 8.828644 CGTCAAGTCATAGTACACTAGTAAGAT 58.171 37.037 0.00 0.00 30.67 2.40
2245 2932 6.127842 TGCAATCGTCAAGTCATAGTACACTA 60.128 38.462 0.00 0.00 0.00 2.74
2446 3197 6.130298 TGTGAATCAACACCAACACTAAAG 57.870 37.500 0.00 0.00 39.69 1.85
2529 3284 2.100631 GCGTGGCGTTGCAGTAGAT 61.101 57.895 0.00 0.00 0.00 1.98
2554 3309 4.659172 CCACCTCCTTTGGCGCCA 62.659 66.667 29.03 29.03 0.00 5.69
2631 3398 1.874345 GCTGCTGGCATGTTGAGCTT 61.874 55.000 12.16 0.00 41.35 3.74
2714 3481 2.229792 GCCATGTCAACCTTCTCAACA 58.770 47.619 0.00 0.00 0.00 3.33
2805 3572 7.412853 GCTACAGTAGCGATAGTAAACTACAA 58.587 38.462 16.89 0.00 42.62 2.41
2885 3659 3.931907 TGGCTTAACTGGATGCATACT 57.068 42.857 11.02 0.00 0.00 2.12
2989 3786 5.909054 CGAACAACTACGAACAGTAACACTA 59.091 40.000 0.00 0.00 34.45 2.74
3039 3836 7.727181 ACTGGACAGTGGATACTAATGAATAC 58.273 38.462 3.82 0.00 40.75 1.89
3243 4045 4.089361 TCTAAGAGGTGAAGTCATGCTCA 58.911 43.478 0.00 0.00 0.00 4.26
3263 4065 5.967088 ACTAAACTACTCACATTGCGATCT 58.033 37.500 0.00 0.00 0.00 2.75
3328 4142 2.750888 GCCCGACACATCCGAAAGC 61.751 63.158 0.00 0.00 0.00 3.51
3333 4147 2.519377 TATAAAGCCCGACACATCCG 57.481 50.000 0.00 0.00 0.00 4.18
3371 4185 3.953712 TGAGTCAGACGCAATAAAGGA 57.046 42.857 4.24 0.00 0.00 3.36
3610 4427 1.972872 AGAACCAACAGTGCCTCAAG 58.027 50.000 0.00 0.00 0.00 3.02
3629 4446 4.202274 TGGATATCGGCGTCCTTTATCAAA 60.202 41.667 14.96 3.28 35.49 2.69
3631 4448 2.894765 TGGATATCGGCGTCCTTTATCA 59.105 45.455 14.96 0.00 35.49 2.15
3632 4449 3.251571 GTGGATATCGGCGTCCTTTATC 58.748 50.000 14.96 10.69 35.49 1.75
3633 4450 2.028385 GGTGGATATCGGCGTCCTTTAT 60.028 50.000 14.96 0.00 35.49 1.40
3634 4451 1.342174 GGTGGATATCGGCGTCCTTTA 59.658 52.381 14.96 0.00 35.49 1.85
3635 4452 0.106149 GGTGGATATCGGCGTCCTTT 59.894 55.000 14.96 0.00 35.49 3.11
3636 4453 1.046472 TGGTGGATATCGGCGTCCTT 61.046 55.000 14.96 0.00 35.49 3.36
3637 4454 1.456892 TGGTGGATATCGGCGTCCT 60.457 57.895 14.96 1.17 35.49 3.85
3638 4455 1.300697 GTGGTGGATATCGGCGTCC 60.301 63.158 6.85 7.52 35.02 4.79
3639 4456 0.874607 GTGTGGTGGATATCGGCGTC 60.875 60.000 6.85 0.00 0.00 5.19
3640 4457 1.143183 GTGTGGTGGATATCGGCGT 59.857 57.895 6.85 0.00 0.00 5.68
3641 4458 1.949133 CGTGTGGTGGATATCGGCG 60.949 63.158 0.00 0.00 0.00 6.46
3642 4459 1.143183 ACGTGTGGTGGATATCGGC 59.857 57.895 0.00 0.00 0.00 5.54
3643 4460 2.971997 CACGTGTGGTGGATATCGG 58.028 57.895 7.58 0.00 43.16 4.18
3652 4469 4.142337 TGTCGAATATATCACACGTGTGGT 60.142 41.667 39.88 37.34 45.65 4.16
3653 4470 4.356289 TGTCGAATATATCACACGTGTGG 58.644 43.478 39.88 24.84 45.65 4.17
3654 4471 5.610338 GCATGTCGAATATATCACACGTGTG 60.610 44.000 37.04 37.04 46.91 3.82
3655 4472 4.444388 GCATGTCGAATATATCACACGTGT 59.556 41.667 17.22 17.22 33.16 4.49
3656 4473 4.444056 TGCATGTCGAATATATCACACGTG 59.556 41.667 15.48 15.48 33.49 4.49
3657 4474 4.444388 GTGCATGTCGAATATATCACACGT 59.556 41.667 0.00 0.00 0.00 4.49
3658 4475 4.143326 GGTGCATGTCGAATATATCACACG 60.143 45.833 0.00 0.00 0.00 4.49
3659 4476 4.152402 GGGTGCATGTCGAATATATCACAC 59.848 45.833 0.00 0.00 0.00 3.82
3660 4477 4.202305 TGGGTGCATGTCGAATATATCACA 60.202 41.667 0.00 0.00 0.00 3.58
3661 4478 4.314961 TGGGTGCATGTCGAATATATCAC 58.685 43.478 0.00 0.00 0.00 3.06
3662 4479 4.615588 TGGGTGCATGTCGAATATATCA 57.384 40.909 0.00 0.00 0.00 2.15
3663 4480 6.036083 GTGTATGGGTGCATGTCGAATATATC 59.964 42.308 0.00 0.00 0.00 1.63
3664 4481 5.874810 GTGTATGGGTGCATGTCGAATATAT 59.125 40.000 0.00 0.00 0.00 0.86
3665 4482 5.234752 GTGTATGGGTGCATGTCGAATATA 58.765 41.667 0.00 0.00 0.00 0.86
3666 4483 4.065088 GTGTATGGGTGCATGTCGAATAT 58.935 43.478 0.00 0.00 0.00 1.28
3667 4484 3.462982 GTGTATGGGTGCATGTCGAATA 58.537 45.455 0.00 0.00 0.00 1.75
3668 4485 2.288666 GTGTATGGGTGCATGTCGAAT 58.711 47.619 0.00 0.00 0.00 3.34
3669 4486 1.677518 GGTGTATGGGTGCATGTCGAA 60.678 52.381 0.00 0.00 0.00 3.71
3670 4487 0.107897 GGTGTATGGGTGCATGTCGA 60.108 55.000 0.00 0.00 0.00 4.20
3671 4488 1.428370 CGGTGTATGGGTGCATGTCG 61.428 60.000 0.00 0.00 0.00 4.35
3672 4489 0.392461 ACGGTGTATGGGTGCATGTC 60.392 55.000 0.00 0.00 0.00 3.06
3673 4490 0.676466 CACGGTGTATGGGTGCATGT 60.676 55.000 0.00 0.00 0.00 3.21
3674 4491 0.676466 ACACGGTGTATGGGTGCATG 60.676 55.000 12.96 0.00 35.11 4.06
3675 4492 0.676466 CACACGGTGTATGGGTGCAT 60.676 55.000 14.30 0.00 35.11 3.96
3676 4493 1.302112 CACACGGTGTATGGGTGCA 60.302 57.895 14.30 0.00 35.11 4.57
3677 4494 1.302192 ACACACGGTGTATGGGTGC 60.302 57.895 14.30 0.00 45.56 5.01
3678 4495 2.539003 CACACACGGTGTATGGGTG 58.461 57.895 14.30 13.52 45.65 4.61
3679 4496 1.373435 CCACACACGGTGTATGGGT 59.627 57.895 27.01 12.66 45.65 4.51
3680 4497 1.373435 ACCACACACGGTGTATGGG 59.627 57.895 34.48 25.84 45.65 4.00
3687 4504 2.203015 GCTCACACCACACACGGT 60.203 61.111 0.00 0.00 41.07 4.83
3688 4505 2.203001 TGCTCACACCACACACGG 60.203 61.111 0.00 0.00 0.00 4.94
3689 4506 2.246739 CCTGCTCACACCACACACG 61.247 63.158 0.00 0.00 0.00 4.49
3690 4507 0.882042 CTCCTGCTCACACCACACAC 60.882 60.000 0.00 0.00 0.00 3.82
3691 4508 1.447217 CTCCTGCTCACACCACACA 59.553 57.895 0.00 0.00 0.00 3.72
3692 4509 1.302033 CCTCCTGCTCACACCACAC 60.302 63.158 0.00 0.00 0.00 3.82
3693 4510 3.150949 CCTCCTGCTCACACCACA 58.849 61.111 0.00 0.00 0.00 4.17
3694 4511 2.359230 GCCTCCTGCTCACACCAC 60.359 66.667 0.00 0.00 36.87 4.16
3695 4512 2.848679 TGCCTCCTGCTCACACCA 60.849 61.111 0.00 0.00 42.00 4.17
3696 4513 2.046507 CTGCCTCCTGCTCACACC 60.047 66.667 0.00 0.00 42.00 4.16
3697 4514 2.745492 GCTGCCTCCTGCTCACAC 60.745 66.667 0.00 0.00 42.00 3.82
3698 4515 4.025858 GGCTGCCTCCTGCTCACA 62.026 66.667 12.43 0.00 42.00 3.58
3699 4516 4.792804 GGGCTGCCTCCTGCTCAC 62.793 72.222 19.68 0.00 42.00 3.51
3701 4518 4.792804 GTGGGCTGCCTCCTGCTC 62.793 72.222 19.68 0.00 42.00 4.26
3721 4538 4.269523 TCTGCCCACACACAGCCC 62.270 66.667 0.00 0.00 33.80 5.19
3722 4539 2.980233 GTCTGCCCACACACAGCC 60.980 66.667 0.00 0.00 33.80 4.85
3723 4540 1.174712 AATGTCTGCCCACACACAGC 61.175 55.000 0.00 0.00 33.80 4.40
3724 4541 0.594602 CAATGTCTGCCCACACACAG 59.405 55.000 0.00 0.00 27.60 3.66
3725 4542 0.822944 CCAATGTCTGCCCACACACA 60.823 55.000 0.00 0.00 0.00 3.72
3726 4543 0.537143 TCCAATGTCTGCCCACACAC 60.537 55.000 0.00 0.00 0.00 3.82
3727 4544 0.184692 TTCCAATGTCTGCCCACACA 59.815 50.000 0.00 0.00 0.00 3.72
3728 4545 1.549203 ATTCCAATGTCTGCCCACAC 58.451 50.000 0.00 0.00 0.00 3.82
3729 4546 1.894466 CAATTCCAATGTCTGCCCACA 59.106 47.619 0.00 0.00 0.00 4.17
3730 4547 1.404583 GCAATTCCAATGTCTGCCCAC 60.405 52.381 0.00 0.00 0.00 4.61
3731 4548 0.896923 GCAATTCCAATGTCTGCCCA 59.103 50.000 0.00 0.00 0.00 5.36
3732 4549 0.176449 GGCAATTCCAATGTCTGCCC 59.824 55.000 0.00 0.00 45.60 5.36
3733 4550 3.746900 GGCAATTCCAATGTCTGCC 57.253 52.632 0.00 0.00 45.27 4.85
3742 4559 0.383590 CACACGTGTTGGCAATTCCA 59.616 50.000 20.79 0.00 44.85 3.53
3743 4560 0.318614 CCACACGTGTTGGCAATTCC 60.319 55.000 20.79 0.00 0.00 3.01
3744 4561 0.318614 CCCACACGTGTTGGCAATTC 60.319 55.000 24.17 0.00 0.00 2.17
3745 4562 1.739049 CCCACACGTGTTGGCAATT 59.261 52.632 24.17 0.00 0.00 2.32
3746 4563 3.442441 CCCACACGTGTTGGCAAT 58.558 55.556 24.17 0.00 0.00 3.56
3757 4574 3.108357 GAAATAGCCGCGCCCACAC 62.108 63.158 0.00 0.00 0.00 3.82
3758 4575 2.822255 GAAATAGCCGCGCCCACA 60.822 61.111 0.00 0.00 0.00 4.17
3759 4576 3.937062 CGAAATAGCCGCGCCCAC 61.937 66.667 0.00 0.00 0.00 4.61
3760 4577 4.460683 ACGAAATAGCCGCGCCCA 62.461 61.111 0.00 0.00 0.00 5.36
3761 4578 3.937062 CACGAAATAGCCGCGCCC 61.937 66.667 0.00 0.00 0.00 6.13
3762 4579 4.591317 GCACGAAATAGCCGCGCC 62.591 66.667 0.00 0.00 0.00 6.53
3763 4580 4.591317 GGCACGAAATAGCCGCGC 62.591 66.667 0.00 0.00 41.70 6.86
3777 4594 2.610532 TACTTGTTGGGCGTGTGGCA 62.611 55.000 0.00 0.00 46.16 4.92
3778 4595 1.894756 TACTTGTTGGGCGTGTGGC 60.895 57.895 0.00 0.00 42.51 5.01
3779 4596 0.534203 AGTACTTGTTGGGCGTGTGG 60.534 55.000 0.00 0.00 0.00 4.17
3780 4597 1.796459 GTAGTACTTGTTGGGCGTGTG 59.204 52.381 0.00 0.00 0.00 3.82
3781 4598 1.690352 AGTAGTACTTGTTGGGCGTGT 59.310 47.619 0.00 0.00 0.00 4.49
3782 4599 2.288579 TGAGTAGTACTTGTTGGGCGTG 60.289 50.000 0.00 0.00 0.00 5.34
3783 4600 1.965643 TGAGTAGTACTTGTTGGGCGT 59.034 47.619 0.00 0.00 0.00 5.68
3784 4601 2.736144 TGAGTAGTACTTGTTGGGCG 57.264 50.000 0.00 0.00 0.00 6.13
3785 4602 4.434520 GAGATGAGTAGTACTTGTTGGGC 58.565 47.826 0.00 0.00 0.00 5.36
3786 4603 4.466370 TGGAGATGAGTAGTACTTGTTGGG 59.534 45.833 0.00 0.00 0.00 4.12
3787 4604 5.411781 GTGGAGATGAGTAGTACTTGTTGG 58.588 45.833 0.00 0.00 0.00 3.77
3788 4605 5.411781 GGTGGAGATGAGTAGTACTTGTTG 58.588 45.833 0.00 0.00 0.00 3.33
3789 4606 4.466726 GGGTGGAGATGAGTAGTACTTGTT 59.533 45.833 0.00 0.00 0.00 2.83
3790 4607 4.024670 GGGTGGAGATGAGTAGTACTTGT 58.975 47.826 0.00 0.00 0.00 3.16
3791 4608 3.385111 GGGGTGGAGATGAGTAGTACTTG 59.615 52.174 0.00 0.00 0.00 3.16
3792 4609 3.644335 GGGGTGGAGATGAGTAGTACTT 58.356 50.000 0.00 0.00 0.00 2.24
3793 4610 2.423088 CGGGGTGGAGATGAGTAGTACT 60.423 54.545 1.37 1.37 0.00 2.73
3794 4611 1.955080 CGGGGTGGAGATGAGTAGTAC 59.045 57.143 0.00 0.00 0.00 2.73
3795 4612 1.753141 GCGGGGTGGAGATGAGTAGTA 60.753 57.143 0.00 0.00 0.00 1.82
3796 4613 1.043673 GCGGGGTGGAGATGAGTAGT 61.044 60.000 0.00 0.00 0.00 2.73
3797 4614 1.742768 GCGGGGTGGAGATGAGTAG 59.257 63.158 0.00 0.00 0.00 2.57
3798 4615 2.125326 CGCGGGGTGGAGATGAGTA 61.125 63.158 0.00 0.00 0.00 2.59
3799 4616 3.461773 CGCGGGGTGGAGATGAGT 61.462 66.667 0.00 0.00 0.00 3.41
3800 4617 4.899239 GCGCGGGGTGGAGATGAG 62.899 72.222 8.83 0.00 0.00 2.90
3818 4635 1.522258 CATTTTTGCTTCGTGCCACAC 59.478 47.619 0.00 0.00 42.00 3.82
3819 4636 1.850377 CATTTTTGCTTCGTGCCACA 58.150 45.000 0.00 0.00 42.00 4.17
3820 4637 0.508213 GCATTTTTGCTTCGTGCCAC 59.492 50.000 1.30 0.00 42.00 5.01
3821 4638 2.897780 GCATTTTTGCTTCGTGCCA 58.102 47.368 1.30 0.00 42.00 4.92
3823 4640 0.599728 TGGGCATTTTTGCTTCGTGC 60.600 50.000 0.00 0.00 43.25 5.34
3824 4641 1.139163 GTGGGCATTTTTGCTTCGTG 58.861 50.000 0.00 0.00 34.73 4.35
3825 4642 0.749649 TGTGGGCATTTTTGCTTCGT 59.250 45.000 0.00 0.00 34.73 3.85
3826 4643 1.139163 GTGTGGGCATTTTTGCTTCG 58.861 50.000 0.00 0.00 34.73 3.79
3827 4644 1.139163 CGTGTGGGCATTTTTGCTTC 58.861 50.000 0.00 0.00 34.73 3.86
3828 4645 0.463620 ACGTGTGGGCATTTTTGCTT 59.536 45.000 0.00 0.00 34.73 3.91
3829 4646 0.031994 GACGTGTGGGCATTTTTGCT 59.968 50.000 0.00 0.00 34.73 3.91
3830 4647 0.943835 GGACGTGTGGGCATTTTTGC 60.944 55.000 0.00 0.00 0.00 3.68
3831 4648 0.673437 AGGACGTGTGGGCATTTTTG 59.327 50.000 0.00 0.00 0.00 2.44
3832 4649 0.673437 CAGGACGTGTGGGCATTTTT 59.327 50.000 0.00 0.00 0.00 1.94
3833 4650 1.178534 CCAGGACGTGTGGGCATTTT 61.179 55.000 0.00 0.00 0.00 1.82
3834 4651 1.603455 CCAGGACGTGTGGGCATTT 60.603 57.895 0.00 0.00 0.00 2.32
3835 4652 2.034066 CCAGGACGTGTGGGCATT 59.966 61.111 0.00 0.00 0.00 3.56
3836 4653 4.722700 GCCAGGACGTGTGGGCAT 62.723 66.667 14.05 0.00 45.70 4.40
3843 4660 4.435436 TAGCTGCGCCAGGACGTG 62.435 66.667 4.18 0.00 34.88 4.49
3844 4661 4.436998 GTAGCTGCGCCAGGACGT 62.437 66.667 4.18 0.00 34.88 4.34
3846 4663 2.552585 TAACGTAGCTGCGCCAGGAC 62.553 60.000 24.60 0.00 34.88 3.85
3847 4664 2.279502 CTAACGTAGCTGCGCCAGGA 62.280 60.000 24.60 4.16 34.88 3.86
3848 4665 1.878522 CTAACGTAGCTGCGCCAGG 60.879 63.158 24.60 8.26 34.88 4.45
3849 4666 1.878522 CCTAACGTAGCTGCGCCAG 60.879 63.158 24.60 19.44 34.88 4.85
3850 4667 1.314534 TACCTAACGTAGCTGCGCCA 61.315 55.000 24.60 11.00 34.88 5.69
3851 4668 0.869028 GTACCTAACGTAGCTGCGCC 60.869 60.000 24.60 0.00 34.88 6.53
3852 4669 0.869028 GGTACCTAACGTAGCTGCGC 60.869 60.000 24.60 0.00 41.39 6.09
3853 4670 3.247033 GGTACCTAACGTAGCTGCG 57.753 57.895 23.12 23.12 41.39 5.18
3867 4684 4.580551 CGTCATCCCGCGGGGTAC 62.581 72.222 42.36 32.50 44.74 3.34
3868 4685 4.818863 TCGTCATCCCGCGGGGTA 62.819 66.667 42.36 26.63 44.74 3.69
3870 4687 2.372040 TAAATCGTCATCCCGCGGGG 62.372 60.000 42.36 28.14 46.11 5.73
3871 4688 0.944311 CTAAATCGTCATCCCGCGGG 60.944 60.000 39.13 39.13 0.00 6.13
3872 4689 0.249322 ACTAAATCGTCATCCCGCGG 60.249 55.000 21.04 21.04 0.00 6.46
3873 4690 1.257936 CAACTAAATCGTCATCCCGCG 59.742 52.381 0.00 0.00 0.00 6.46
3874 4691 1.003866 GCAACTAAATCGTCATCCCGC 60.004 52.381 0.00 0.00 0.00 6.13
3875 4692 1.597663 GGCAACTAAATCGTCATCCCG 59.402 52.381 0.00 0.00 0.00 5.14
3876 4693 2.639065 TGGCAACTAAATCGTCATCCC 58.361 47.619 0.00 0.00 37.61 3.85
3877 4694 3.251004 GGATGGCAACTAAATCGTCATCC 59.749 47.826 6.50 6.50 41.24 3.51
3878 4695 4.024556 CAGGATGGCAACTAAATCGTCATC 60.025 45.833 0.00 0.00 37.61 2.92
3879 4696 3.879295 CAGGATGGCAACTAAATCGTCAT 59.121 43.478 0.00 0.00 37.61 3.06
3880 4697 3.055458 TCAGGATGGCAACTAAATCGTCA 60.055 43.478 0.00 0.00 36.16 4.35
3881 4698 3.531538 TCAGGATGGCAACTAAATCGTC 58.468 45.455 0.00 0.00 36.16 4.20
3882 4699 3.627395 TCAGGATGGCAACTAAATCGT 57.373 42.857 0.00 0.00 36.16 3.73
3883 4700 4.261322 CCAATCAGGATGGCAACTAAATCG 60.261 45.833 0.00 0.00 41.22 3.34
3884 4701 5.192327 CCAATCAGGATGGCAACTAAATC 57.808 43.478 0.00 0.00 41.22 2.17
3894 4711 2.359981 ACATCTGCCAATCAGGATGG 57.640 50.000 0.00 0.00 43.06 3.51
3895 4712 4.082665 ACTACATCTGCCAATCAGGATG 57.917 45.455 0.00 0.00 43.06 3.51
3896 4713 4.785346 AACTACATCTGCCAATCAGGAT 57.215 40.909 0.00 0.00 43.06 3.24
3897 4714 5.221722 GGATAACTACATCTGCCAATCAGGA 60.222 44.000 0.00 0.00 43.06 3.86
3898 4715 4.999950 GGATAACTACATCTGCCAATCAGG 59.000 45.833 0.00 0.00 43.06 3.86
3899 4716 4.687948 CGGATAACTACATCTGCCAATCAG 59.312 45.833 0.00 0.00 44.21 2.90
3900 4717 4.503123 CCGGATAACTACATCTGCCAATCA 60.503 45.833 0.00 0.00 31.05 2.57
3901 4718 3.997021 CCGGATAACTACATCTGCCAATC 59.003 47.826 0.00 0.00 31.05 2.67
3902 4719 3.244561 CCCGGATAACTACATCTGCCAAT 60.245 47.826 0.73 0.00 31.05 3.16
3903 4720 2.104111 CCCGGATAACTACATCTGCCAA 59.896 50.000 0.73 0.00 31.05 4.52
3904 4721 1.691976 CCCGGATAACTACATCTGCCA 59.308 52.381 0.73 0.00 31.05 4.92
3905 4722 1.968493 TCCCGGATAACTACATCTGCC 59.032 52.381 0.73 0.00 31.05 4.85
3906 4723 3.589988 CATCCCGGATAACTACATCTGC 58.410 50.000 0.73 0.00 31.05 4.26
3907 4724 3.617531 GCCATCCCGGATAACTACATCTG 60.618 52.174 0.73 0.00 36.56 2.90
3908 4725 2.567615 GCCATCCCGGATAACTACATCT 59.432 50.000 0.73 0.00 36.56 2.90
3909 4726 2.301870 TGCCATCCCGGATAACTACATC 59.698 50.000 0.73 0.00 36.56 3.06
3910 4727 2.334977 TGCCATCCCGGATAACTACAT 58.665 47.619 0.73 0.00 36.56 2.29
3911 4728 1.796017 TGCCATCCCGGATAACTACA 58.204 50.000 0.73 0.00 36.56 2.74
3912 4729 2.922740 TTGCCATCCCGGATAACTAC 57.077 50.000 0.73 0.00 36.56 2.73
3913 4730 3.137544 ACAATTGCCATCCCGGATAACTA 59.862 43.478 0.73 0.00 36.56 2.24
3914 4731 2.091885 ACAATTGCCATCCCGGATAACT 60.092 45.455 0.73 0.00 36.56 2.24
3915 4732 2.306847 ACAATTGCCATCCCGGATAAC 58.693 47.619 0.73 0.00 36.56 1.89
3916 4733 2.746279 ACAATTGCCATCCCGGATAA 57.254 45.000 0.73 0.00 36.56 1.75
3917 4734 2.708861 ACTACAATTGCCATCCCGGATA 59.291 45.455 0.73 0.00 36.56 2.59
3918 4735 1.494721 ACTACAATTGCCATCCCGGAT 59.505 47.619 0.73 0.00 36.56 4.18
3919 4736 0.916086 ACTACAATTGCCATCCCGGA 59.084 50.000 0.73 0.00 36.56 5.14
3920 4737 1.405105 CAACTACAATTGCCATCCCGG 59.595 52.381 5.05 0.00 38.11 5.73
3921 4738 2.091541 ACAACTACAATTGCCATCCCG 58.908 47.619 5.05 0.00 32.47 5.14
3922 4739 5.652994 TTTACAACTACAATTGCCATCCC 57.347 39.130 5.05 0.00 32.47 3.85
3923 4740 5.576774 GCTTTTACAACTACAATTGCCATCC 59.423 40.000 5.05 0.00 32.47 3.51
3924 4741 6.155827 TGCTTTTACAACTACAATTGCCATC 58.844 36.000 5.05 0.00 32.47 3.51
3925 4742 6.095432 TGCTTTTACAACTACAATTGCCAT 57.905 33.333 5.05 0.00 32.47 4.40
3926 4743 5.521906 TGCTTTTACAACTACAATTGCCA 57.478 34.783 5.05 0.00 32.47 4.92
3927 4744 5.348451 CCATGCTTTTACAACTACAATTGCC 59.652 40.000 5.05 0.00 32.47 4.52
3928 4745 5.163963 GCCATGCTTTTACAACTACAATTGC 60.164 40.000 5.05 0.00 32.47 3.56
3929 4746 5.925397 TGCCATGCTTTTACAACTACAATTG 59.075 36.000 3.24 3.24 35.59 2.32
3930 4747 6.095432 TGCCATGCTTTTACAACTACAATT 57.905 33.333 0.00 0.00 0.00 2.32
3931 4748 5.720371 TGCCATGCTTTTACAACTACAAT 57.280 34.783 0.00 0.00 0.00 2.71
3932 4749 5.068460 AGTTGCCATGCTTTTACAACTACAA 59.932 36.000 4.97 0.00 46.66 2.41
3933 4750 4.582656 AGTTGCCATGCTTTTACAACTACA 59.417 37.500 4.97 0.00 46.66 2.74
3934 4751 5.121221 AGTTGCCATGCTTTTACAACTAC 57.879 39.130 4.97 0.00 46.66 2.73
3937 4754 4.243007 AGAGTTGCCATGCTTTTACAAC 57.757 40.909 0.00 0.00 40.65 3.32
3938 4755 5.945784 AGATAGAGTTGCCATGCTTTTACAA 59.054 36.000 0.00 0.00 0.00 2.41
3939 4756 5.355071 CAGATAGAGTTGCCATGCTTTTACA 59.645 40.000 0.00 0.00 0.00 2.41
3940 4757 5.355350 ACAGATAGAGTTGCCATGCTTTTAC 59.645 40.000 0.00 0.00 0.00 2.01
3941 4758 5.500234 ACAGATAGAGTTGCCATGCTTTTA 58.500 37.500 0.00 0.00 0.00 1.52
3942 4759 4.338879 ACAGATAGAGTTGCCATGCTTTT 58.661 39.130 0.00 0.00 0.00 2.27
3943 4760 3.960571 ACAGATAGAGTTGCCATGCTTT 58.039 40.909 0.00 0.00 0.00 3.51
3944 4761 3.641434 ACAGATAGAGTTGCCATGCTT 57.359 42.857 0.00 0.00 0.00 3.91
3945 4762 3.641434 AACAGATAGAGTTGCCATGCT 57.359 42.857 0.00 0.00 0.00 3.79
3946 4763 4.418392 CAAAACAGATAGAGTTGCCATGC 58.582 43.478 0.00 0.00 0.00 4.06
3947 4764 4.460382 ACCAAAACAGATAGAGTTGCCATG 59.540 41.667 0.00 0.00 0.00 3.66
3948 4765 4.666512 ACCAAAACAGATAGAGTTGCCAT 58.333 39.130 0.00 0.00 0.00 4.40
3949 4766 4.098914 ACCAAAACAGATAGAGTTGCCA 57.901 40.909 0.00 0.00 0.00 4.92
3950 4767 6.206829 AGTTAACCAAAACAGATAGAGTTGCC 59.793 38.462 0.88 0.00 0.00 4.52
3951 4768 7.203255 AGTTAACCAAAACAGATAGAGTTGC 57.797 36.000 0.88 0.00 0.00 4.17
3962 4779 9.796180 ACATGGTAACTATAGTTAACCAAAACA 57.204 29.630 29.95 20.04 45.16 2.83
3983 4800 7.867403 GTGGCAATTACCATAAATTAGACATGG 59.133 37.037 0.00 0.00 43.01 3.66
3984 4801 8.412456 TGTGGCAATTACCATAAATTAGACATG 58.588 33.333 0.00 0.00 43.01 3.21
3985 4802 8.532186 TGTGGCAATTACCATAAATTAGACAT 57.468 30.769 0.00 0.00 43.01 3.06
3986 4803 7.946381 TGTGGCAATTACCATAAATTAGACA 57.054 32.000 0.00 0.00 43.01 3.41
3987 4804 8.413229 ACATGTGGCAATTACCATAAATTAGAC 58.587 33.333 0.00 0.00 43.01 2.59
3988 4805 8.532186 ACATGTGGCAATTACCATAAATTAGA 57.468 30.769 0.00 0.00 43.01 2.10
3991 4808 9.762933 GATTACATGTGGCAATTACCATAAATT 57.237 29.630 9.11 0.00 43.01 1.82
3992 4809 8.922237 TGATTACATGTGGCAATTACCATAAAT 58.078 29.630 9.11 0.00 43.01 1.40
3993 4810 8.298729 TGATTACATGTGGCAATTACCATAAA 57.701 30.769 9.11 0.00 43.01 1.40
3994 4811 7.888250 TGATTACATGTGGCAATTACCATAA 57.112 32.000 9.11 0.00 43.01 1.90
3995 4812 7.888250 TTGATTACATGTGGCAATTACCATA 57.112 32.000 9.11 0.00 43.01 2.74
3996 4813 6.788598 TTGATTACATGTGGCAATTACCAT 57.211 33.333 9.11 0.00 43.01 3.55
3997 4814 6.393990 GTTTGATTACATGTGGCAATTACCA 58.606 36.000 9.11 0.00 37.38 3.25
3998 4815 5.810074 GGTTTGATTACATGTGGCAATTACC 59.190 40.000 9.11 10.88 0.00 2.85
3999 4816 6.630071 AGGTTTGATTACATGTGGCAATTAC 58.370 36.000 9.11 6.12 0.00 1.89
4000 4817 6.849085 AGGTTTGATTACATGTGGCAATTA 57.151 33.333 9.11 0.00 0.00 1.40
4001 4818 5.743636 AGGTTTGATTACATGTGGCAATT 57.256 34.783 9.11 0.00 0.00 2.32
4002 4819 5.743636 AAGGTTTGATTACATGTGGCAAT 57.256 34.783 9.11 0.00 0.00 3.56
4003 4820 5.772672 ACTAAGGTTTGATTACATGTGGCAA 59.227 36.000 9.11 7.15 0.00 4.52
4004 4821 5.321102 ACTAAGGTTTGATTACATGTGGCA 58.679 37.500 9.11 0.53 0.00 4.92
4005 4822 5.897377 ACTAAGGTTTGATTACATGTGGC 57.103 39.130 9.11 0.00 0.00 5.01
4006 4823 6.092748 GCAACTAAGGTTTGATTACATGTGG 58.907 40.000 9.11 0.00 32.73 4.17
4007 4824 6.092748 GGCAACTAAGGTTTGATTACATGTG 58.907 40.000 9.11 0.00 32.73 3.21
4008 4825 5.106317 CGGCAACTAAGGTTTGATTACATGT 60.106 40.000 2.69 2.69 32.73 3.21
4009 4826 5.106317 ACGGCAACTAAGGTTTGATTACATG 60.106 40.000 0.00 0.00 32.73 3.21
4010 4827 5.007682 ACGGCAACTAAGGTTTGATTACAT 58.992 37.500 0.00 0.00 32.73 2.29
4011 4828 4.214545 CACGGCAACTAAGGTTTGATTACA 59.785 41.667 0.00 0.00 32.73 2.41
4012 4829 4.214758 ACACGGCAACTAAGGTTTGATTAC 59.785 41.667 0.00 0.00 32.73 1.89
4013 4830 4.214545 CACACGGCAACTAAGGTTTGATTA 59.785 41.667 0.00 0.00 32.73 1.75
4014 4831 3.004315 CACACGGCAACTAAGGTTTGATT 59.996 43.478 0.00 0.00 32.73 2.57
4015 4832 2.552315 CACACGGCAACTAAGGTTTGAT 59.448 45.455 0.00 0.00 32.73 2.57
4016 4833 1.944024 CACACGGCAACTAAGGTTTGA 59.056 47.619 0.00 0.00 32.73 2.69
4017 4834 1.673920 ACACACGGCAACTAAGGTTTG 59.326 47.619 0.00 0.00 32.73 2.93
4018 4835 1.673920 CACACACGGCAACTAAGGTTT 59.326 47.619 0.00 0.00 32.73 3.27
4019 4836 1.134340 TCACACACGGCAACTAAGGTT 60.134 47.619 0.00 0.00 35.86 3.50
4020 4837 0.466543 TCACACACGGCAACTAAGGT 59.533 50.000 0.00 0.00 0.00 3.50
4021 4838 1.808411 ATCACACACGGCAACTAAGG 58.192 50.000 0.00 0.00 0.00 2.69
4022 4839 4.451096 AGTTAATCACACACGGCAACTAAG 59.549 41.667 0.00 0.00 0.00 2.18
4023 4840 4.382291 AGTTAATCACACACGGCAACTAA 58.618 39.130 0.00 0.00 0.00 2.24
4024 4841 3.997762 AGTTAATCACACACGGCAACTA 58.002 40.909 0.00 0.00 0.00 2.24
4025 4842 2.846193 AGTTAATCACACACGGCAACT 58.154 42.857 0.00 0.00 0.00 3.16
4026 4843 3.744426 AGTAGTTAATCACACACGGCAAC 59.256 43.478 0.00 0.00 0.00 4.17
4027 4844 3.997762 AGTAGTTAATCACACACGGCAA 58.002 40.909 0.00 0.00 0.00 4.52
4028 4845 3.671008 AGTAGTTAATCACACACGGCA 57.329 42.857 0.00 0.00 0.00 5.69
4029 4846 3.424433 GCAAGTAGTTAATCACACACGGC 60.424 47.826 0.00 0.00 0.00 5.68
4030 4847 3.124636 GGCAAGTAGTTAATCACACACGG 59.875 47.826 0.00 0.00 0.00 4.94
4031 4848 3.743911 TGGCAAGTAGTTAATCACACACG 59.256 43.478 0.00 0.00 0.00 4.49
4032 4849 4.377022 CGTGGCAAGTAGTTAATCACACAC 60.377 45.833 0.00 0.00 0.00 3.82
4033 4850 3.743911 CGTGGCAAGTAGTTAATCACACA 59.256 43.478 0.00 0.00 0.00 3.72
4034 4851 3.744426 ACGTGGCAAGTAGTTAATCACAC 59.256 43.478 3.68 0.00 0.00 3.82
4035 4852 3.997762 ACGTGGCAAGTAGTTAATCACA 58.002 40.909 3.68 0.00 0.00 3.58
4036 4853 5.006358 CCATACGTGGCAAGTAGTTAATCAC 59.994 44.000 17.78 0.00 39.01 3.06
4037 4854 5.113383 CCATACGTGGCAAGTAGTTAATCA 58.887 41.667 17.78 0.00 39.01 2.57
4038 4855 5.652744 CCATACGTGGCAAGTAGTTAATC 57.347 43.478 17.78 0.00 39.01 1.75
4049 4866 7.705255 AACTACTGTTTGACCATACGTGGCA 62.705 44.000 0.00 0.00 40.35 4.92
4050 4867 5.331789 AACTACTGTTTGACCATACGTGGC 61.332 45.833 0.00 0.00 40.35 5.01
4051 4868 4.151689 CAACTACTGTTTGACCATACGTGG 59.848 45.833 0.00 0.00 42.05 4.94
4052 4869 4.377022 GCAACTACTGTTTGACCATACGTG 60.377 45.833 0.00 0.00 33.52 4.49
4053 4870 3.744426 GCAACTACTGTTTGACCATACGT 59.256 43.478 0.00 0.00 33.52 3.57
4054 4871 3.124636 GGCAACTACTGTTTGACCATACG 59.875 47.826 0.00 0.00 33.52 3.06
4055 4872 4.069304 TGGCAACTACTGTTTGACCATAC 58.931 43.478 0.00 0.00 33.52 2.39
4056 4873 4.359434 TGGCAACTACTGTTTGACCATA 57.641 40.909 0.00 0.00 33.52 2.74
4057 4874 3.222173 TGGCAACTACTGTTTGACCAT 57.778 42.857 0.00 0.00 33.52 3.55
4072 4889 4.634012 ACTAGGTAAAGACACATGGCAA 57.366 40.909 0.00 0.00 0.00 4.52
4073 4890 4.323417 CAACTAGGTAAAGACACATGGCA 58.677 43.478 0.00 0.00 0.00 4.92
4076 4893 4.154195 GTGGCAACTAGGTAAAGACACATG 59.846 45.833 0.00 0.00 37.61 3.21
4077 4894 4.324267 GTGGCAACTAGGTAAAGACACAT 58.676 43.478 0.00 0.00 37.61 3.21
4078 4895 3.735591 GTGGCAACTAGGTAAAGACACA 58.264 45.455 0.00 0.00 37.61 3.72
4079 4896 2.735134 CGTGGCAACTAGGTAAAGACAC 59.265 50.000 0.00 0.00 37.61 3.67
4080 4897 2.366266 ACGTGGCAACTAGGTAAAGACA 59.634 45.455 0.00 0.00 37.61 3.41
4081 4898 2.735134 CACGTGGCAACTAGGTAAAGAC 59.265 50.000 7.95 0.00 37.61 3.01
4082 4899 2.366266 ACACGTGGCAACTAGGTAAAGA 59.634 45.455 21.57 0.00 37.61 2.52
4083 4900 2.478894 CACACGTGGCAACTAGGTAAAG 59.521 50.000 21.57 0.00 37.61 1.85
4084 4901 2.485903 CACACGTGGCAACTAGGTAAA 58.514 47.619 21.57 0.00 37.61 2.01
4085 4902 1.270412 CCACACGTGGCAACTAGGTAA 60.270 52.381 21.57 0.00 44.73 2.85
4086 4903 0.319083 CCACACGTGGCAACTAGGTA 59.681 55.000 21.57 0.00 44.73 3.08
4087 4904 1.070786 CCACACGTGGCAACTAGGT 59.929 57.895 21.57 0.00 44.73 3.08
4088 4905 3.966215 CCACACGTGGCAACTAGG 58.034 61.111 21.57 5.92 44.73 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.