Multiple sequence alignment - TraesCS6D01G008600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G008600 chr6D 100.000 2705 0 0 1 2705 3464343 3461639 0.000000e+00 4996.0
1 TraesCS6D01G008600 chr6D 78.052 688 103 33 911 1571 3421604 3420938 9.080000e-105 390.0
2 TraesCS6D01G008600 chr6D 77.031 714 108 35 911 1586 3446094 3445399 2.560000e-95 359.0
3 TraesCS6D01G008600 chr6D 82.730 359 52 8 1070 1426 3418367 3418017 7.270000e-81 311.0
4 TraesCS6D01G008600 chr6D 100.000 29 0 0 1053 1081 157062205 157062233 1.000000e-03 54.7
5 TraesCS6D01G008600 chr6B 90.141 2130 133 32 1 2073 6803152 6801043 0.000000e+00 2699.0
6 TraesCS6D01G008600 chr6B 83.401 494 51 17 1 466 7283184 7283674 1.920000e-116 429.0
7 TraesCS6D01G008600 chr6B 82.892 491 54 19 459 928 7284063 7284544 5.390000e-112 414.0
8 TraesCS6D01G008600 chr6B 78.003 691 97 36 908 1571 6786730 6786068 1.520000e-102 383.0
9 TraesCS6D01G008600 chr6A 88.401 1957 144 36 24 1910 2249536 2247593 0.000000e+00 2279.0
10 TraesCS6D01G008600 chr6A 80.863 533 77 17 1068 1586 2222237 2221716 1.950000e-106 396.0
11 TraesCS6D01G008600 chr6A 84.211 95 14 1 659 752 2211015 2210921 1.030000e-14 91.6
12 TraesCS6D01G008600 chr2D 74.286 280 64 6 2389 2663 14521852 14521576 7.920000e-21 111.0
13 TraesCS6D01G008600 chr4B 74.872 195 42 6 2514 2704 377932925 377932734 6.210000e-12 82.4
14 TraesCS6D01G008600 chr7D 76.282 156 32 5 2552 2705 562766945 562766793 8.030000e-11 78.7
15 TraesCS6D01G008600 chr7D 73.516 219 47 9 2399 2610 29728523 29728737 3.740000e-09 73.1
16 TraesCS6D01G008600 chr2A 83.529 85 10 3 2548 2630 699509557 699509475 2.890000e-10 76.8
17 TraesCS6D01G008600 chr2A 81.609 87 15 1 2496 2581 125906112 125906026 1.340000e-08 71.3
18 TraesCS6D01G008600 chr2B 73.059 219 45 12 2375 2591 51746322 51746116 6.250000e-07 65.8
19 TraesCS6D01G008600 chr2B 100.000 30 0 0 1053 1082 2609275 2609304 3.760000e-04 56.5
20 TraesCS6D01G008600 chr5B 73.158 190 46 5 2399 2584 396067316 396067128 2.250000e-06 63.9
21 TraesCS6D01G008600 chr7A 97.059 34 1 0 1052 1085 197813304 197813271 1.050000e-04 58.4
22 TraesCS6D01G008600 chr5A 100.000 30 0 0 1053 1082 452404643 452404672 3.760000e-04 56.5
23 TraesCS6D01G008600 chr5A 100.000 30 0 0 1053 1082 641595044 641595073 3.760000e-04 56.5
24 TraesCS6D01G008600 chr4A 80.822 73 13 1 2555 2627 614109298 614109227 3.760000e-04 56.5
25 TraesCS6D01G008600 chr3D 100.000 28 0 0 1051 1078 294560043 294560070 5.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G008600 chr6D 3461639 3464343 2704 True 4996.0 4996 100.0000 1 2705 1 chr6D.!!$R2 2704
1 TraesCS6D01G008600 chr6D 3445399 3446094 695 True 359.0 359 77.0310 911 1586 1 chr6D.!!$R1 675
2 TraesCS6D01G008600 chr6D 3418017 3421604 3587 True 350.5 390 80.3910 911 1571 2 chr6D.!!$R3 660
3 TraesCS6D01G008600 chr6B 6801043 6803152 2109 True 2699.0 2699 90.1410 1 2073 1 chr6B.!!$R2 2072
4 TraesCS6D01G008600 chr6B 7283184 7284544 1360 False 421.5 429 83.1465 1 928 2 chr6B.!!$F1 927
5 TraesCS6D01G008600 chr6B 6786068 6786730 662 True 383.0 383 78.0030 908 1571 1 chr6B.!!$R1 663
6 TraesCS6D01G008600 chr6A 2247593 2249536 1943 True 2279.0 2279 88.4010 24 1910 1 chr6A.!!$R3 1886
7 TraesCS6D01G008600 chr6A 2221716 2222237 521 True 396.0 396 80.8630 1068 1586 1 chr6A.!!$R2 518

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
360 391 0.523072 GCTGCTTGCTCCAATCGAAA 59.477 50.0 0.0 0.0 38.95 3.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2125 4161 0.034477 CAAAATACCGTCTGGGCCCT 60.034 55.0 25.7 3.19 40.62 5.19 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 38 1.357761 CCTAATTGTTCCACCCCTGGT 59.642 52.381 0.00 0.00 38.90 4.00
61 62 7.402640 GTTGATCTGAATATCGTTTCCAAGTC 58.597 38.462 0.00 0.00 0.00 3.01
62 63 6.878317 TGATCTGAATATCGTTTCCAAGTCT 58.122 36.000 0.00 0.00 0.00 3.24
63 64 8.007405 TGATCTGAATATCGTTTCCAAGTCTA 57.993 34.615 0.00 0.00 0.00 2.59
65 66 7.165460 TCTGAATATCGTTTCCAAGTCTACA 57.835 36.000 0.00 0.00 0.00 2.74
66 67 7.033791 TCTGAATATCGTTTCCAAGTCTACAC 58.966 38.462 0.00 0.00 0.00 2.90
67 68 6.931838 TGAATATCGTTTCCAAGTCTACACT 58.068 36.000 0.00 0.00 0.00 3.55
146 164 8.816640 ACAAATCAATACATCTGGTTTTTCAC 57.183 30.769 0.00 0.00 0.00 3.18
158 183 6.491394 TCTGGTTTTTCACGTTTCTATGTTG 58.509 36.000 0.00 0.00 0.00 3.33
177 202 7.873719 ATGTTGAAAATAATATCGGTGACCA 57.126 32.000 1.11 0.00 0.00 4.02
234 264 6.603940 AGAGATAAGAGAGAATATGTGCCC 57.396 41.667 0.00 0.00 0.00 5.36
260 290 1.818674 GCGAAGGATGGTTGAAATGGT 59.181 47.619 0.00 0.00 0.00 3.55
324 354 5.960202 ACCCAAGCAATCCTTATCAATTTCT 59.040 36.000 0.00 0.00 31.00 2.52
342 372 8.627403 TCAATTTCTTATCCTTCATGATTGAGC 58.373 33.333 0.00 0.00 32.27 4.26
360 391 0.523072 GCTGCTTGCTCCAATCGAAA 59.477 50.000 0.00 0.00 38.95 3.46
362 393 2.860062 CTGCTTGCTCCAATCGAAAAG 58.140 47.619 0.00 0.00 0.00 2.27
544 977 5.086104 TGTGCTCTCCTTTACCTAACATC 57.914 43.478 0.00 0.00 0.00 3.06
545 978 4.777896 TGTGCTCTCCTTTACCTAACATCT 59.222 41.667 0.00 0.00 0.00 2.90
546 979 5.955959 TGTGCTCTCCTTTACCTAACATCTA 59.044 40.000 0.00 0.00 0.00 1.98
573 1006 3.253188 CACCCAAATATTCCTACATGCGG 59.747 47.826 0.00 0.00 0.00 5.69
705 1146 5.245751 ACTTGTCATGATGCATTAAAACCCA 59.754 36.000 0.00 0.00 0.00 4.51
713 1154 9.938670 CATGATGCATTAAAACCCATAAATTTG 57.061 29.630 0.00 0.00 0.00 2.32
718 1159 9.950496 TGCATTAAAACCCATAAATTTGTACAT 57.050 25.926 0.00 0.00 0.00 2.29
822 1279 7.566760 TCATAATTGTAATGCAAGTACCCAG 57.433 36.000 8.09 0.00 39.92 4.45
833 1293 5.815581 TGCAAGTACCCAGTAATTGAAGAT 58.184 37.500 16.54 0.00 43.75 2.40
866 1332 0.537188 TCGACATGAAGGAAGGAGGC 59.463 55.000 0.00 0.00 0.00 4.70
867 1333 0.807667 CGACATGAAGGAAGGAGGCG 60.808 60.000 0.00 0.00 0.00 5.52
1009 1492 6.824305 AACACTTATCTTTCACCAATCCAG 57.176 37.500 0.00 0.00 0.00 3.86
1014 1497 4.598036 ATCTTTCACCAATCCAGTCCAT 57.402 40.909 0.00 0.00 0.00 3.41
1052 1535 1.084842 ACCCTGCATACCTCCCCTT 59.915 57.895 0.00 0.00 0.00 3.95
1054 1537 0.988145 CCCTGCATACCTCCCCTTCA 60.988 60.000 0.00 0.00 0.00 3.02
1064 1556 2.441001 ACCTCCCCTTCATCATCATCAC 59.559 50.000 0.00 0.00 0.00 3.06
1065 1557 2.224719 CCTCCCCTTCATCATCATCACC 60.225 54.545 0.00 0.00 0.00 4.02
1066 1558 2.440627 CTCCCCTTCATCATCATCACCA 59.559 50.000 0.00 0.00 0.00 4.17
1127 1619 4.069232 CTGGGAAGCAGCGACGGA 62.069 66.667 0.00 0.00 0.00 4.69
1235 1730 3.379445 TGGGAGGACTTCGACCGC 61.379 66.667 0.00 0.00 0.00 5.68
1274 1769 0.036671 GCAACGTGCCCTACTACCTT 60.037 55.000 0.00 0.00 37.42 3.50
1346 1841 2.125912 GCGCTCCACTCGACACAT 60.126 61.111 0.00 0.00 0.00 3.21
1355 1850 1.079819 CTCGACACATGACCGGCTT 60.080 57.895 0.00 0.00 0.00 4.35
1356 1851 0.172578 CTCGACACATGACCGGCTTA 59.827 55.000 0.00 0.00 0.00 3.09
1436 1931 3.486542 CCGTAAGTAGTAGTTCTGCGACC 60.487 52.174 0.00 0.00 34.00 4.79
1486 1997 6.823182 TGATGTGTGGATCGATTTACTGATTT 59.177 34.615 0.00 0.00 0.00 2.17
1564 2075 2.065993 GCTCAAGAGCGTCAGTTACA 57.934 50.000 6.28 0.00 45.29 2.41
1571 2082 0.249868 AGCGTCAGTTACAAGCAGCA 60.250 50.000 0.00 0.00 0.00 4.41
1596 2107 2.234908 AGCACTAGCCAACCTTCACTAG 59.765 50.000 0.00 0.00 43.56 2.57
1648 2173 9.712305 AGGAATAAGTTAATTGGTGATCTATCG 57.288 33.333 0.00 0.00 0.00 2.92
1665 2190 6.944234 TCTATCGTTGATGATGTACAGAGT 57.056 37.500 0.33 0.00 0.00 3.24
1696 2221 5.696270 CCAAGGAAAAGAAGGCATTTTGTAC 59.304 40.000 0.67 0.00 30.22 2.90
1707 2235 8.024865 AGAAGGCATTTTGTACGTATTAAAACC 58.975 33.333 17.42 15.41 0.00 3.27
1767 2451 2.787473 TGTATGGACAAGCAAGGGAG 57.213 50.000 0.00 0.00 30.68 4.30
1795 2479 0.537371 GGCAGGCACAGTTGGTTACT 60.537 55.000 0.00 0.00 37.68 2.24
1798 2482 2.484264 GCAGGCACAGTTGGTTACTTAG 59.516 50.000 0.00 0.00 33.85 2.18
1839 2872 6.039616 GCTGAGTATTTCTCTACCTGTTCTG 58.960 44.000 0.00 0.00 43.13 3.02
1920 2953 9.352784 TGAGGCATTAACTTTTTATTTTCATCG 57.647 29.630 0.00 0.00 0.00 3.84
1950 2983 9.569122 ACAACTAATACAAAATGAGTTACCAGT 57.431 29.630 0.00 0.00 0.00 4.00
2074 4110 1.968540 GCTCACAGGCTGGTTGTCC 60.969 63.158 20.34 1.34 0.00 4.02
2075 4111 1.302832 CTCACAGGCTGGTTGTCCC 60.303 63.158 20.34 0.00 0.00 4.46
2076 4112 2.055689 CTCACAGGCTGGTTGTCCCA 62.056 60.000 20.34 0.00 42.51 4.37
2078 4114 1.152756 ACAGGCTGGTTGTCCCAAC 60.153 57.895 20.34 0.00 44.65 3.77
2079 4115 1.152777 CAGGCTGGTTGTCCCAACA 60.153 57.895 6.61 0.00 44.65 3.33
2080 4116 1.151450 AGGCTGGTTGTCCCAACAG 59.849 57.895 9.12 6.00 44.65 3.16
2083 4119 3.040965 CTGGTTGTCCCAACAGCAT 57.959 52.632 9.12 0.00 44.65 3.79
2084 4120 0.883833 CTGGTTGTCCCAACAGCATC 59.116 55.000 9.12 0.00 44.65 3.91
2085 4121 0.888736 TGGTTGTCCCAACAGCATCG 60.889 55.000 9.12 0.00 41.50 3.84
2086 4122 1.210155 GTTGTCCCAACAGCATCGC 59.790 57.895 2.37 0.00 36.68 4.58
2089 4125 1.210155 GTCCCAACAGCATCGCAAC 59.790 57.895 0.00 0.00 0.00 4.17
2090 4126 1.971167 TCCCAACAGCATCGCAACC 60.971 57.895 0.00 0.00 0.00 3.77
2092 4128 1.659233 CCAACAGCATCGCAACCAA 59.341 52.632 0.00 0.00 0.00 3.67
2093 4129 0.387622 CCAACAGCATCGCAACCAAG 60.388 55.000 0.00 0.00 0.00 3.61
2094 4130 0.592637 CAACAGCATCGCAACCAAGA 59.407 50.000 0.00 0.00 0.00 3.02
2095 4131 1.200716 CAACAGCATCGCAACCAAGAT 59.799 47.619 0.00 0.00 0.00 2.40
2096 4132 1.089920 ACAGCATCGCAACCAAGATC 58.910 50.000 0.00 0.00 0.00 2.75
2097 4133 0.379669 CAGCATCGCAACCAAGATCC 59.620 55.000 0.00 0.00 0.00 3.36
2098 4134 0.035152 AGCATCGCAACCAAGATCCA 60.035 50.000 0.00 0.00 0.00 3.41
2099 4135 0.379669 GCATCGCAACCAAGATCCAG 59.620 55.000 0.00 0.00 0.00 3.86
2100 4136 2.013563 GCATCGCAACCAAGATCCAGA 61.014 52.381 0.00 0.00 0.00 3.86
2101 4137 1.667724 CATCGCAACCAAGATCCAGAC 59.332 52.381 0.00 0.00 0.00 3.51
2102 4138 0.976641 TCGCAACCAAGATCCAGACT 59.023 50.000 0.00 0.00 0.00 3.24
2103 4139 2.176045 TCGCAACCAAGATCCAGACTA 58.824 47.619 0.00 0.00 0.00 2.59
2104 4140 2.766263 TCGCAACCAAGATCCAGACTAT 59.234 45.455 0.00 0.00 0.00 2.12
2105 4141 3.126831 CGCAACCAAGATCCAGACTATC 58.873 50.000 0.00 0.00 0.00 2.08
2107 4143 4.517285 GCAACCAAGATCCAGACTATCAA 58.483 43.478 0.00 0.00 0.00 2.57
2109 4145 5.008415 GCAACCAAGATCCAGACTATCAATG 59.992 44.000 0.00 0.00 0.00 2.82
2111 4147 5.923204 ACCAAGATCCAGACTATCAATGTC 58.077 41.667 0.00 0.00 34.88 3.06
2112 4148 5.426509 ACCAAGATCCAGACTATCAATGTCA 59.573 40.000 0.00 0.00 36.94 3.58
2114 4150 6.996879 CCAAGATCCAGACTATCAATGTCATT 59.003 38.462 0.00 0.00 36.94 2.57
2115 4151 7.041303 CCAAGATCCAGACTATCAATGTCATTG 60.041 40.741 17.95 17.95 41.57 2.82
2116 4152 7.134362 AGATCCAGACTATCAATGTCATTGT 57.866 36.000 22.01 13.42 41.02 2.71
2119 4155 6.475504 TCCAGACTATCAATGTCATTGTTGT 58.524 36.000 22.01 18.16 41.02 3.32
2120 4156 6.372381 TCCAGACTATCAATGTCATTGTTGTG 59.628 38.462 22.01 14.27 41.02 3.33
2124 4160 3.646611 TCAATGTCATTGTTGTGGCTG 57.353 42.857 22.01 0.00 41.02 4.85
2125 4161 3.220940 TCAATGTCATTGTTGTGGCTGA 58.779 40.909 22.01 0.29 41.02 4.26
2127 4163 1.608055 TGTCATTGTTGTGGCTGAGG 58.392 50.000 0.00 0.00 0.00 3.86
2128 4164 0.883833 GTCATTGTTGTGGCTGAGGG 59.116 55.000 0.00 0.00 0.00 4.30
2129 4165 0.895100 TCATTGTTGTGGCTGAGGGC 60.895 55.000 0.00 0.00 40.90 5.19
2141 4177 1.306654 TGAGGGCCCAGACGGTATT 60.307 57.895 27.56 0.00 0.00 1.89
2142 4178 0.912487 TGAGGGCCCAGACGGTATTT 60.912 55.000 27.56 0.00 0.00 1.40
2143 4179 0.255033 GAGGGCCCAGACGGTATTTT 59.745 55.000 27.56 0.00 0.00 1.82
2144 4180 0.034477 AGGGCCCAGACGGTATTTTG 60.034 55.000 27.56 0.00 0.00 2.44
2146 4182 1.092348 GGCCCAGACGGTATTTTGTC 58.908 55.000 0.00 0.00 35.33 3.18
2147 4183 1.092348 GCCCAGACGGTATTTTGTCC 58.908 55.000 0.00 0.00 35.71 4.02
2149 4185 2.944094 GCCCAGACGGTATTTTGTCCAT 60.944 50.000 0.00 0.00 35.71 3.41
2150 4186 2.682856 CCCAGACGGTATTTTGTCCATG 59.317 50.000 0.00 0.00 35.71 3.66
2151 4187 2.682856 CCAGACGGTATTTTGTCCATGG 59.317 50.000 4.97 4.97 35.71 3.66
2153 4189 3.374058 CAGACGGTATTTTGTCCATGGTC 59.626 47.826 12.58 6.87 35.71 4.02
2154 4190 2.681344 GACGGTATTTTGTCCATGGTCC 59.319 50.000 12.58 4.37 0.00 4.46
2155 4191 2.307686 ACGGTATTTTGTCCATGGTCCT 59.692 45.455 12.58 0.00 0.00 3.85
2156 4192 2.943033 CGGTATTTTGTCCATGGTCCTC 59.057 50.000 12.58 2.06 0.00 3.71
2157 4193 2.943033 GGTATTTTGTCCATGGTCCTCG 59.057 50.000 12.58 0.00 0.00 4.63
2158 4194 1.463674 ATTTTGTCCATGGTCCTCGC 58.536 50.000 12.58 0.00 0.00 5.03
2159 4195 0.953471 TTTTGTCCATGGTCCTCGCG 60.953 55.000 12.58 0.00 0.00 5.87
2160 4196 1.822114 TTTGTCCATGGTCCTCGCGA 61.822 55.000 12.58 9.26 0.00 5.87
2161 4197 1.613317 TTGTCCATGGTCCTCGCGAT 61.613 55.000 10.36 0.00 0.00 4.58
2162 4198 0.753848 TGTCCATGGTCCTCGCGATA 60.754 55.000 10.36 0.00 0.00 2.92
2163 4199 0.387929 GTCCATGGTCCTCGCGATAA 59.612 55.000 10.36 0.00 0.00 1.75
2164 4200 1.000955 GTCCATGGTCCTCGCGATAAT 59.999 52.381 10.36 0.00 0.00 1.28
2165 4201 1.000843 TCCATGGTCCTCGCGATAATG 59.999 52.381 10.36 9.24 0.00 1.90
2166 4202 1.432514 CATGGTCCTCGCGATAATGG 58.567 55.000 10.36 7.67 0.00 3.16
2167 4203 1.000843 CATGGTCCTCGCGATAATGGA 59.999 52.381 10.36 10.44 0.00 3.41
2168 4204 1.116308 TGGTCCTCGCGATAATGGAA 58.884 50.000 15.54 0.00 0.00 3.53
2169 4205 1.068588 TGGTCCTCGCGATAATGGAAG 59.931 52.381 15.54 0.00 0.00 3.46
2170 4206 1.340248 GGTCCTCGCGATAATGGAAGA 59.660 52.381 15.54 0.00 0.00 2.87
2171 4207 2.608261 GGTCCTCGCGATAATGGAAGAG 60.608 54.545 15.54 0.00 0.00 2.85
2172 4208 1.613925 TCCTCGCGATAATGGAAGAGG 59.386 52.381 10.36 2.85 44.75 3.69
2173 4209 1.337260 CCTCGCGATAATGGAAGAGGG 60.337 57.143 10.36 0.00 40.98 4.30
2174 4210 1.613925 CTCGCGATAATGGAAGAGGGA 59.386 52.381 10.36 0.00 0.00 4.20
2175 4211 1.613925 TCGCGATAATGGAAGAGGGAG 59.386 52.381 3.71 0.00 0.00 4.30
2176 4212 1.613925 CGCGATAATGGAAGAGGGAGA 59.386 52.381 0.00 0.00 0.00 3.71
2177 4213 2.352225 CGCGATAATGGAAGAGGGAGAG 60.352 54.545 0.00 0.00 0.00 3.20
2178 4214 2.894126 GCGATAATGGAAGAGGGAGAGA 59.106 50.000 0.00 0.00 0.00 3.10
2179 4215 3.056891 GCGATAATGGAAGAGGGAGAGAG 60.057 52.174 0.00 0.00 0.00 3.20
2180 4216 4.402829 CGATAATGGAAGAGGGAGAGAGA 58.597 47.826 0.00 0.00 0.00 3.10
2181 4217 4.458989 CGATAATGGAAGAGGGAGAGAGAG 59.541 50.000 0.00 0.00 0.00 3.20
2182 4218 5.640147 GATAATGGAAGAGGGAGAGAGAGA 58.360 45.833 0.00 0.00 0.00 3.10
2183 4219 3.600448 ATGGAAGAGGGAGAGAGAGAG 57.400 52.381 0.00 0.00 0.00 3.20
2184 4220 2.567862 TGGAAGAGGGAGAGAGAGAGA 58.432 52.381 0.00 0.00 0.00 3.10
2185 4221 2.509548 TGGAAGAGGGAGAGAGAGAGAG 59.490 54.545 0.00 0.00 0.00 3.20
2186 4222 2.777692 GGAAGAGGGAGAGAGAGAGAGA 59.222 54.545 0.00 0.00 0.00 3.10
2187 4223 3.181450 GGAAGAGGGAGAGAGAGAGAGAG 60.181 56.522 0.00 0.00 0.00 3.20
2188 4224 3.421394 AGAGGGAGAGAGAGAGAGAGA 57.579 52.381 0.00 0.00 0.00 3.10
2189 4225 3.312890 AGAGGGAGAGAGAGAGAGAGAG 58.687 54.545 0.00 0.00 0.00 3.20
2190 4226 3.051803 AGAGGGAGAGAGAGAGAGAGAGA 60.052 52.174 0.00 0.00 0.00 3.10
2191 4227 3.312890 AGGGAGAGAGAGAGAGAGAGAG 58.687 54.545 0.00 0.00 0.00 3.20
2192 4228 3.051803 AGGGAGAGAGAGAGAGAGAGAGA 60.052 52.174 0.00 0.00 0.00 3.10
2193 4229 3.323403 GGGAGAGAGAGAGAGAGAGAGAG 59.677 56.522 0.00 0.00 0.00 3.20
2194 4230 4.219115 GGAGAGAGAGAGAGAGAGAGAGA 58.781 52.174 0.00 0.00 0.00 3.10
2195 4231 4.280677 GGAGAGAGAGAGAGAGAGAGAGAG 59.719 54.167 0.00 0.00 0.00 3.20
2196 4232 5.136068 AGAGAGAGAGAGAGAGAGAGAGA 57.864 47.826 0.00 0.00 0.00 3.10
2197 4233 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
2198 4234 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
2199 4235 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
2200 4236 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
2201 4237 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
2202 4238 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
2203 4239 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
2204 4240 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
2205 4241 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
2206 4242 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
2207 4243 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
2208 4244 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
2209 4245 5.714863 AGAGAGAGAGAGAGAGAGAGAGAT 58.285 45.833 0.00 0.00 0.00 2.75
2210 4246 5.539574 AGAGAGAGAGAGAGAGAGAGAGATG 59.460 48.000 0.00 0.00 0.00 2.90
2211 4247 5.462240 AGAGAGAGAGAGAGAGAGAGATGA 58.538 45.833 0.00 0.00 0.00 2.92
2212 4248 6.083383 AGAGAGAGAGAGAGAGAGAGATGAT 58.917 44.000 0.00 0.00 0.00 2.45
2213 4249 7.244558 AGAGAGAGAGAGAGAGAGAGATGATA 58.755 42.308 0.00 0.00 0.00 2.15
2214 4250 7.732140 AGAGAGAGAGAGAGAGAGAGATGATAA 59.268 40.741 0.00 0.00 0.00 1.75
2215 4251 8.267620 AGAGAGAGAGAGAGAGAGATGATAAA 57.732 38.462 0.00 0.00 0.00 1.40
2216 4252 8.153550 AGAGAGAGAGAGAGAGAGATGATAAAC 58.846 40.741 0.00 0.00 0.00 2.01
2217 4253 7.227156 AGAGAGAGAGAGAGAGATGATAAACC 58.773 42.308 0.00 0.00 0.00 3.27
2218 4254 5.997746 AGAGAGAGAGAGAGATGATAAACCG 59.002 44.000 0.00 0.00 0.00 4.44
2219 4255 5.935945 AGAGAGAGAGAGATGATAAACCGA 58.064 41.667 0.00 0.00 0.00 4.69
2220 4256 6.361433 AGAGAGAGAGAGATGATAAACCGAA 58.639 40.000 0.00 0.00 0.00 4.30
2221 4257 7.004086 AGAGAGAGAGAGATGATAAACCGAAT 58.996 38.462 0.00 0.00 0.00 3.34
2222 4258 7.505585 AGAGAGAGAGAGATGATAAACCGAATT 59.494 37.037 0.00 0.00 0.00 2.17
2223 4259 7.432869 AGAGAGAGAGATGATAAACCGAATTG 58.567 38.462 0.00 0.00 0.00 2.32
2224 4260 5.988561 AGAGAGAGATGATAAACCGAATTGC 59.011 40.000 0.00 0.00 0.00 3.56
2225 4261 5.674525 AGAGAGATGATAAACCGAATTGCA 58.325 37.500 0.00 0.00 0.00 4.08
2226 4262 6.115446 AGAGAGATGATAAACCGAATTGCAA 58.885 36.000 0.00 0.00 0.00 4.08
2227 4263 6.599244 AGAGAGATGATAAACCGAATTGCAAA 59.401 34.615 1.71 0.00 0.00 3.68
2228 4264 6.789262 AGAGATGATAAACCGAATTGCAAAG 58.211 36.000 1.71 0.00 0.00 2.77
2229 4265 5.343249 AGATGATAAACCGAATTGCAAAGC 58.657 37.500 1.71 0.00 0.00 3.51
2230 4266 4.511617 TGATAAACCGAATTGCAAAGCA 57.488 36.364 1.71 0.00 36.47 3.91
2231 4267 5.070770 TGATAAACCGAATTGCAAAGCAT 57.929 34.783 1.71 0.00 38.76 3.79
2232 4268 6.201226 TGATAAACCGAATTGCAAAGCATA 57.799 33.333 1.71 0.00 38.76 3.14
2233 4269 6.264832 TGATAAACCGAATTGCAAAGCATAG 58.735 36.000 1.71 0.00 38.76 2.23
2234 4270 3.508744 AACCGAATTGCAAAGCATAGG 57.491 42.857 1.71 4.27 38.76 2.57
2235 4271 1.134946 ACCGAATTGCAAAGCATAGGC 59.865 47.619 1.71 0.00 38.76 3.93
2245 4281 2.740055 GCATAGGCTCGGATGGCG 60.740 66.667 0.00 0.00 36.96 5.69
2246 4282 3.051210 CATAGGCTCGGATGGCGA 58.949 61.111 0.00 0.00 37.59 5.54
2247 4283 1.080230 CATAGGCTCGGATGGCGAG 60.080 63.158 0.00 0.00 37.59 5.03
2248 4284 2.279069 ATAGGCTCGGATGGCGAGG 61.279 63.158 0.00 0.00 37.59 4.63
2252 4288 4.899239 CTCGGATGGCGAGGCACC 62.899 72.222 0.26 5.02 0.00 5.01
2255 4291 4.101448 GGATGGCGAGGCACCACT 62.101 66.667 0.26 0.00 40.82 4.00
2256 4292 2.821366 GATGGCGAGGCACCACTG 60.821 66.667 0.26 0.00 40.82 3.66
2257 4293 4.415150 ATGGCGAGGCACCACTGG 62.415 66.667 0.26 0.00 40.82 4.00
2261 4297 2.584064 CGAGGCACCACTGGCATA 59.416 61.111 0.00 0.00 45.63 3.14
2262 4298 1.078497 CGAGGCACCACTGGCATAA 60.078 57.895 0.00 0.00 45.63 1.90
2263 4299 1.369091 CGAGGCACCACTGGCATAAC 61.369 60.000 0.00 0.00 45.63 1.89
2264 4300 1.000896 AGGCACCACTGGCATAACC 60.001 57.895 0.00 0.00 45.63 2.85
2275 4311 3.788227 TGGCATAACCAGTCAACTCTT 57.212 42.857 0.00 0.00 46.36 2.85
2276 4312 4.901197 TGGCATAACCAGTCAACTCTTA 57.099 40.909 0.00 0.00 46.36 2.10
2277 4313 5.435686 TGGCATAACCAGTCAACTCTTAT 57.564 39.130 0.00 0.00 46.36 1.73
2278 4314 5.185454 TGGCATAACCAGTCAACTCTTATG 58.815 41.667 10.30 10.30 46.36 1.90
2279 4315 4.576463 GGCATAACCAGTCAACTCTTATGG 59.424 45.833 13.81 0.00 38.86 2.74
2280 4316 5.428253 GCATAACCAGTCAACTCTTATGGA 58.572 41.667 13.81 0.00 34.99 3.41
2281 4317 5.294552 GCATAACCAGTCAACTCTTATGGAC 59.705 44.000 13.81 0.00 34.99 4.02
2282 4318 3.983044 ACCAGTCAACTCTTATGGACC 57.017 47.619 0.00 0.00 34.99 4.46
2283 4319 3.248024 ACCAGTCAACTCTTATGGACCA 58.752 45.455 0.00 0.00 34.99 4.02
2284 4320 3.650942 ACCAGTCAACTCTTATGGACCAA 59.349 43.478 0.00 0.00 34.99 3.67
2285 4321 4.256920 CCAGTCAACTCTTATGGACCAAG 58.743 47.826 0.00 0.00 32.55 3.61
2286 4322 3.686726 CAGTCAACTCTTATGGACCAAGC 59.313 47.826 0.00 0.00 0.00 4.01
2287 4323 3.010420 GTCAACTCTTATGGACCAAGCC 58.990 50.000 0.00 0.00 0.00 4.35
2288 4324 2.642311 TCAACTCTTATGGACCAAGCCA 59.358 45.455 0.00 0.00 43.23 4.75
2290 4326 4.473196 TCAACTCTTATGGACCAAGCCATA 59.527 41.667 0.00 0.00 46.56 2.74
2296 4332 0.918983 TGGACCAAGCCATAAGAGGG 59.081 55.000 0.00 0.00 31.66 4.30
2297 4333 0.919710 GGACCAAGCCATAAGAGGGT 59.080 55.000 0.00 0.00 42.17 4.34
2298 4334 2.124411 GGACCAAGCCATAAGAGGGTA 58.876 52.381 0.00 0.00 38.73 3.69
2299 4335 2.508300 GGACCAAGCCATAAGAGGGTAA 59.492 50.000 0.00 0.00 38.73 2.85
2300 4336 3.542648 GACCAAGCCATAAGAGGGTAAC 58.457 50.000 0.00 0.00 38.73 2.50
2301 4337 3.190439 ACCAAGCCATAAGAGGGTAACT 58.810 45.455 0.00 0.00 38.73 2.24
2302 4338 3.200165 ACCAAGCCATAAGAGGGTAACTC 59.800 47.826 0.00 0.00 46.98 3.01
2311 4347 2.932855 GAGGGTAACTCTTATGGGCC 57.067 55.000 0.00 0.00 43.14 5.80
2312 4348 2.124411 GAGGGTAACTCTTATGGGCCA 58.876 52.381 9.61 9.61 43.14 5.36
2313 4349 2.508300 GAGGGTAACTCTTATGGGCCAA 59.492 50.000 11.89 0.00 43.14 4.52
2314 4350 2.241430 AGGGTAACTCTTATGGGCCAAC 59.759 50.000 11.89 0.19 0.00 3.77
2315 4351 2.651455 GGTAACTCTTATGGGCCAACC 58.349 52.381 11.89 7.24 40.81 3.77
2323 4359 3.506808 TGGGCCAACCAGTAGCAT 58.493 55.556 2.13 0.00 46.80 3.79
2324 4360 1.001020 TGGGCCAACCAGTAGCATG 60.001 57.895 2.13 0.00 46.80 4.06
2325 4361 1.302949 GGGCCAACCAGTAGCATGA 59.697 57.895 4.39 0.00 39.85 3.07
2326 4362 1.032114 GGGCCAACCAGTAGCATGAC 61.032 60.000 4.39 0.00 39.85 3.06
2327 4363 0.035056 GGCCAACCAGTAGCATGACT 60.035 55.000 0.00 0.00 35.26 3.41
2328 4364 1.614317 GGCCAACCAGTAGCATGACTT 60.614 52.381 0.00 0.00 35.26 3.01
2329 4365 1.470098 GCCAACCAGTAGCATGACTTG 59.530 52.381 0.00 0.00 0.00 3.16
2337 4373 4.315588 GCATGACTTGCCTGCTCT 57.684 55.556 0.00 0.00 46.15 4.09
2338 4374 2.564471 GCATGACTTGCCTGCTCTT 58.436 52.632 0.00 0.00 46.15 2.85
2339 4375 0.886563 GCATGACTTGCCTGCTCTTT 59.113 50.000 0.00 0.00 46.15 2.52
2340 4376 1.271656 GCATGACTTGCCTGCTCTTTT 59.728 47.619 0.00 0.00 46.15 2.27
2341 4377 2.288640 GCATGACTTGCCTGCTCTTTTT 60.289 45.455 0.00 0.00 46.15 1.94
2391 4427 9.793259 TGATTTGTATTTTAGTGAAAGAGTCCT 57.207 29.630 0.00 0.00 0.00 3.85
2397 4433 9.453325 GTATTTTAGTGAAAGAGTCCTAGATCG 57.547 37.037 0.00 0.00 0.00 3.69
2398 4434 7.698506 TTTTAGTGAAAGAGTCCTAGATCGA 57.301 36.000 0.00 0.00 0.00 3.59
2399 4435 7.883391 TTTAGTGAAAGAGTCCTAGATCGAT 57.117 36.000 0.00 0.00 0.00 3.59
2400 4436 7.883391 TTAGTGAAAGAGTCCTAGATCGATT 57.117 36.000 0.00 0.00 0.00 3.34
2401 4437 8.975663 TTAGTGAAAGAGTCCTAGATCGATTA 57.024 34.615 0.00 0.00 0.00 1.75
2402 4438 9.575868 TTAGTGAAAGAGTCCTAGATCGATTAT 57.424 33.333 0.00 0.00 0.00 1.28
2404 4440 9.575868 AGTGAAAGAGTCCTAGATCGATTATAA 57.424 33.333 0.00 0.00 0.00 0.98
2412 4448 9.968870 AGTCCTAGATCGATTATAAAAGTTCAC 57.031 33.333 0.00 0.00 0.00 3.18
2413 4449 9.194271 GTCCTAGATCGATTATAAAAGTTCACC 57.806 37.037 0.00 0.00 0.00 4.02
2414 4450 8.920174 TCCTAGATCGATTATAAAAGTTCACCA 58.080 33.333 0.00 0.00 0.00 4.17
2415 4451 9.197694 CCTAGATCGATTATAAAAGTTCACCAG 57.802 37.037 0.00 0.00 0.00 4.00
2416 4452 9.967346 CTAGATCGATTATAAAAGTTCACCAGA 57.033 33.333 0.00 0.00 0.00 3.86
2418 4454 9.667107 AGATCGATTATAAAAGTTCACCAGAAA 57.333 29.630 0.00 0.00 35.08 2.52
2426 4462 8.986477 ATAAAAGTTCACCAGAAATACAATGC 57.014 30.769 0.00 0.00 35.08 3.56
2427 4463 6.403866 AAAGTTCACCAGAAATACAATGCA 57.596 33.333 0.00 0.00 35.08 3.96
2428 4464 5.376854 AGTTCACCAGAAATACAATGCAC 57.623 39.130 0.00 0.00 35.08 4.57
2429 4465 4.218417 AGTTCACCAGAAATACAATGCACC 59.782 41.667 0.00 0.00 35.08 5.01
2430 4466 4.032960 TCACCAGAAATACAATGCACCT 57.967 40.909 0.00 0.00 0.00 4.00
2431 4467 3.758023 TCACCAGAAATACAATGCACCTG 59.242 43.478 0.00 0.00 0.00 4.00
2432 4468 3.758023 CACCAGAAATACAATGCACCTGA 59.242 43.478 4.68 0.00 0.00 3.86
2433 4469 4.218200 CACCAGAAATACAATGCACCTGAA 59.782 41.667 4.68 0.00 0.00 3.02
2434 4470 4.832266 ACCAGAAATACAATGCACCTGAAA 59.168 37.500 4.68 0.00 0.00 2.69
2435 4471 5.481473 ACCAGAAATACAATGCACCTGAAAT 59.519 36.000 4.68 0.00 0.00 2.17
2436 4472 6.663093 ACCAGAAATACAATGCACCTGAAATA 59.337 34.615 4.68 0.00 0.00 1.40
2437 4473 7.342799 ACCAGAAATACAATGCACCTGAAATAT 59.657 33.333 4.68 0.00 0.00 1.28
2438 4474 8.849168 CCAGAAATACAATGCACCTGAAATATA 58.151 33.333 4.68 0.00 0.00 0.86
2464 4500 8.742125 ATAGAAATTACATCATGGTCCCTAGA 57.258 34.615 0.00 0.00 0.00 2.43
2465 4501 6.831976 AGAAATTACATCATGGTCCCTAGAC 58.168 40.000 0.00 0.00 42.73 2.59
2466 4502 4.873746 ATTACATCATGGTCCCTAGACG 57.126 45.455 0.00 0.00 44.54 4.18
2467 4503 2.454336 ACATCATGGTCCCTAGACGA 57.546 50.000 0.00 0.00 44.54 4.20
2468 4504 2.032620 ACATCATGGTCCCTAGACGAC 58.967 52.381 0.00 0.00 44.54 4.34
2472 4508 4.447734 GGTCCCTAGACGACCCAA 57.552 61.111 14.88 0.00 44.54 4.12
2473 4509 2.674958 GGTCCCTAGACGACCCAAA 58.325 57.895 14.88 0.00 44.54 3.28
2474 4510 0.248565 GGTCCCTAGACGACCCAAAC 59.751 60.000 14.88 0.00 44.54 2.93
2475 4511 0.971386 GTCCCTAGACGACCCAAACA 59.029 55.000 0.00 0.00 32.18 2.83
2476 4512 1.345415 GTCCCTAGACGACCCAAACAA 59.655 52.381 0.00 0.00 32.18 2.83
2477 4513 1.345415 TCCCTAGACGACCCAAACAAC 59.655 52.381 0.00 0.00 0.00 3.32
2478 4514 1.425412 CCTAGACGACCCAAACAACG 58.575 55.000 0.00 0.00 0.00 4.10
2479 4515 0.788391 CTAGACGACCCAAACAACGC 59.212 55.000 0.00 0.00 0.00 4.84
2480 4516 0.600782 TAGACGACCCAAACAACGCC 60.601 55.000 0.00 0.00 0.00 5.68
2481 4517 1.890510 GACGACCCAAACAACGCCT 60.891 57.895 0.00 0.00 0.00 5.52
2482 4518 0.600782 GACGACCCAAACAACGCCTA 60.601 55.000 0.00 0.00 0.00 3.93
2483 4519 0.881600 ACGACCCAAACAACGCCTAC 60.882 55.000 0.00 0.00 0.00 3.18
2484 4520 1.571215 CGACCCAAACAACGCCTACC 61.571 60.000 0.00 0.00 0.00 3.18
2485 4521 0.535553 GACCCAAACAACGCCTACCA 60.536 55.000 0.00 0.00 0.00 3.25
2486 4522 0.820482 ACCCAAACAACGCCTACCAC 60.820 55.000 0.00 0.00 0.00 4.16
2487 4523 0.536460 CCCAAACAACGCCTACCACT 60.536 55.000 0.00 0.00 0.00 4.00
2488 4524 0.591170 CCAAACAACGCCTACCACTG 59.409 55.000 0.00 0.00 0.00 3.66
2489 4525 0.591170 CAAACAACGCCTACCACTGG 59.409 55.000 0.00 0.00 0.00 4.00
2490 4526 0.536460 AAACAACGCCTACCACTGGG 60.536 55.000 0.00 0.00 41.29 4.45
2491 4527 1.412453 AACAACGCCTACCACTGGGA 61.412 55.000 0.00 0.00 38.05 4.37
2492 4528 1.079127 CAACGCCTACCACTGGGAG 60.079 63.158 0.00 0.00 38.05 4.30
2493 4529 1.229082 AACGCCTACCACTGGGAGA 60.229 57.895 9.17 0.00 38.05 3.71
2494 4530 1.258445 AACGCCTACCACTGGGAGAG 61.258 60.000 9.17 5.13 38.05 3.20
2495 4531 1.379977 CGCCTACCACTGGGAGAGA 60.380 63.158 9.17 0.00 38.05 3.10
2496 4532 1.668101 CGCCTACCACTGGGAGAGAC 61.668 65.000 9.17 0.00 38.05 3.36
2497 4533 1.668101 GCCTACCACTGGGAGAGACG 61.668 65.000 9.17 0.00 38.05 4.18
2498 4534 0.323542 CCTACCACTGGGAGAGACGT 60.324 60.000 9.17 0.00 38.05 4.34
2499 4535 1.096416 CTACCACTGGGAGAGACGTC 58.904 60.000 7.70 7.70 38.05 4.34
2500 4536 0.675837 TACCACTGGGAGAGACGTCG 60.676 60.000 10.46 0.00 38.05 5.12
2501 4537 1.674651 CCACTGGGAGAGACGTCGA 60.675 63.158 10.46 0.00 35.59 4.20
2502 4538 1.502640 CACTGGGAGAGACGTCGAC 59.497 63.158 10.46 5.18 0.00 4.20
2503 4539 1.072678 ACTGGGAGAGACGTCGACA 59.927 57.895 17.16 5.33 0.00 4.35
2504 4540 1.235948 ACTGGGAGAGACGTCGACAC 61.236 60.000 17.16 8.96 0.00 3.67
2526 4562 4.467084 CTGCCGCCGCTTCCCTAA 62.467 66.667 0.00 0.00 35.36 2.69
2527 4563 3.757248 CTGCCGCCGCTTCCCTAAT 62.757 63.158 0.00 0.00 35.36 1.73
2528 4564 2.377628 CTGCCGCCGCTTCCCTAATA 62.378 60.000 0.00 0.00 35.36 0.98
2529 4565 1.668151 GCCGCCGCTTCCCTAATAG 60.668 63.158 0.00 0.00 0.00 1.73
2530 4566 2.046938 CCGCCGCTTCCCTAATAGA 58.953 57.895 0.00 0.00 0.00 1.98
2531 4567 0.038159 CCGCCGCTTCCCTAATAGAG 60.038 60.000 0.00 0.00 0.00 2.43
2532 4568 0.667792 CGCCGCTTCCCTAATAGAGC 60.668 60.000 0.00 0.00 0.00 4.09
2533 4569 0.320858 GCCGCTTCCCTAATAGAGCC 60.321 60.000 0.00 0.00 0.00 4.70
2534 4570 1.048601 CCGCTTCCCTAATAGAGCCA 58.951 55.000 0.00 0.00 0.00 4.75
2535 4571 1.001406 CCGCTTCCCTAATAGAGCCAG 59.999 57.143 0.00 0.00 0.00 4.85
2536 4572 1.606737 CGCTTCCCTAATAGAGCCAGC 60.607 57.143 0.00 0.00 0.00 4.85
2537 4573 1.271108 GCTTCCCTAATAGAGCCAGCC 60.271 57.143 0.00 0.00 0.00 4.85
2538 4574 2.334023 CTTCCCTAATAGAGCCAGCCT 58.666 52.381 0.00 0.00 0.00 4.58
2539 4575 2.496679 TCCCTAATAGAGCCAGCCTT 57.503 50.000 0.00 0.00 0.00 4.35
2540 4576 3.630625 TCCCTAATAGAGCCAGCCTTA 57.369 47.619 0.00 0.00 0.00 2.69
2541 4577 3.240302 TCCCTAATAGAGCCAGCCTTAC 58.760 50.000 0.00 0.00 0.00 2.34
2542 4578 2.303311 CCCTAATAGAGCCAGCCTTACC 59.697 54.545 0.00 0.00 0.00 2.85
2543 4579 2.303311 CCTAATAGAGCCAGCCTTACCC 59.697 54.545 0.00 0.00 0.00 3.69
2544 4580 1.893315 AATAGAGCCAGCCTTACCCA 58.107 50.000 0.00 0.00 0.00 4.51
2545 4581 1.132500 ATAGAGCCAGCCTTACCCAC 58.868 55.000 0.00 0.00 0.00 4.61
2546 4582 0.042731 TAGAGCCAGCCTTACCCACT 59.957 55.000 0.00 0.00 0.00 4.00
2547 4583 1.078143 GAGCCAGCCTTACCCACTG 60.078 63.158 0.00 0.00 0.00 3.66
2548 4584 1.538876 AGCCAGCCTTACCCACTGA 60.539 57.895 0.00 0.00 33.10 3.41
2549 4585 0.916358 AGCCAGCCTTACCCACTGAT 60.916 55.000 0.00 0.00 33.10 2.90
2550 4586 0.749454 GCCAGCCTTACCCACTGATG 60.749 60.000 0.00 0.00 33.10 3.07
2551 4587 0.911769 CCAGCCTTACCCACTGATGA 59.088 55.000 0.00 0.00 33.10 2.92
2552 4588 1.407437 CCAGCCTTACCCACTGATGAC 60.407 57.143 0.00 0.00 33.10 3.06
2553 4589 1.278985 CAGCCTTACCCACTGATGACA 59.721 52.381 0.00 0.00 33.10 3.58
2555 4591 2.014068 GCCTTACCCACTGATGACAGC 61.014 57.143 0.00 0.00 46.95 4.40
2556 4592 1.407437 CCTTACCCACTGATGACAGCC 60.407 57.143 0.00 0.00 46.95 4.85
2557 4593 0.249120 TTACCCACTGATGACAGCCG 59.751 55.000 0.00 0.00 46.95 5.52
2558 4594 0.613572 TACCCACTGATGACAGCCGA 60.614 55.000 0.00 0.00 46.95 5.54
2559 4595 1.153489 CCCACTGATGACAGCCGAG 60.153 63.158 0.00 0.00 46.95 4.63
2560 4596 1.607801 CCCACTGATGACAGCCGAGA 61.608 60.000 0.00 0.00 46.95 4.04
2561 4597 0.247460 CCACTGATGACAGCCGAGAA 59.753 55.000 0.00 0.00 46.95 2.87
2562 4598 1.638133 CACTGATGACAGCCGAGAAG 58.362 55.000 0.00 0.00 46.95 2.85
2563 4599 1.067283 CACTGATGACAGCCGAGAAGT 60.067 52.381 0.00 0.00 46.95 3.01
2564 4600 1.203523 ACTGATGACAGCCGAGAAGTC 59.796 52.381 0.00 0.00 46.95 3.01
2565 4601 1.476085 CTGATGACAGCCGAGAAGTCT 59.524 52.381 0.00 0.00 37.33 3.24
2566 4602 1.895798 TGATGACAGCCGAGAAGTCTT 59.104 47.619 0.00 0.00 33.56 3.01
2567 4603 2.094494 TGATGACAGCCGAGAAGTCTTC 60.094 50.000 4.26 4.26 37.12 2.87
2568 4604 1.328279 TGACAGCCGAGAAGTCTTCA 58.672 50.000 14.97 0.00 33.56 3.02
2569 4605 1.895798 TGACAGCCGAGAAGTCTTCAT 59.104 47.619 14.97 0.18 33.56 2.57
2570 4606 2.266554 GACAGCCGAGAAGTCTTCATG 58.733 52.381 14.97 6.28 0.00 3.07
2571 4607 1.005340 CAGCCGAGAAGTCTTCATGC 58.995 55.000 14.97 12.75 0.00 4.06
2572 4608 0.610174 AGCCGAGAAGTCTTCATGCA 59.390 50.000 14.97 0.00 0.00 3.96
2573 4609 0.723981 GCCGAGAAGTCTTCATGCAC 59.276 55.000 14.97 0.00 0.00 4.57
2574 4610 0.994995 CCGAGAAGTCTTCATGCACG 59.005 55.000 14.97 10.87 0.00 5.34
2575 4611 1.670087 CCGAGAAGTCTTCATGCACGT 60.670 52.381 14.97 0.00 0.00 4.49
2576 4612 1.388093 CGAGAAGTCTTCATGCACGTG 59.612 52.381 12.28 12.28 0.00 4.49
2577 4613 1.127582 GAGAAGTCTTCATGCACGTGC 59.872 52.381 33.11 33.11 42.50 5.34
2578 4614 0.166814 GAAGTCTTCATGCACGTGCC 59.833 55.000 35.72 19.24 41.18 5.01
2579 4615 1.237285 AAGTCTTCATGCACGTGCCC 61.237 55.000 35.72 12.23 41.18 5.36
2580 4616 2.359850 TCTTCATGCACGTGCCCC 60.360 61.111 35.72 11.45 41.18 5.80
2581 4617 2.360350 CTTCATGCACGTGCCCCT 60.360 61.111 35.72 18.80 41.18 4.79
2582 4618 1.078497 CTTCATGCACGTGCCCCTA 60.078 57.895 35.72 19.27 41.18 3.53
2583 4619 0.676466 CTTCATGCACGTGCCCCTAA 60.676 55.000 35.72 22.44 41.18 2.69
2584 4620 0.250945 TTCATGCACGTGCCCCTAAA 60.251 50.000 35.72 18.09 41.18 1.85
2585 4621 0.250945 TCATGCACGTGCCCCTAAAA 60.251 50.000 35.72 17.31 41.18 1.52
2586 4622 0.600557 CATGCACGTGCCCCTAAAAA 59.399 50.000 35.72 16.53 41.18 1.94
2587 4623 0.601057 ATGCACGTGCCCCTAAAAAC 59.399 50.000 35.72 6.80 41.18 2.43
2588 4624 1.287815 GCACGTGCCCCTAAAAACC 59.712 57.895 30.12 0.00 34.31 3.27
2589 4625 1.457009 GCACGTGCCCCTAAAAACCA 61.457 55.000 30.12 0.00 34.31 3.67
2590 4626 0.596082 CACGTGCCCCTAAAAACCAG 59.404 55.000 0.82 0.00 0.00 4.00
2591 4627 0.184211 ACGTGCCCCTAAAAACCAGT 59.816 50.000 0.00 0.00 0.00 4.00
2592 4628 0.879090 CGTGCCCCTAAAAACCAGTC 59.121 55.000 0.00 0.00 0.00 3.51
2593 4629 1.254026 GTGCCCCTAAAAACCAGTCC 58.746 55.000 0.00 0.00 0.00 3.85
2594 4630 0.113580 TGCCCCTAAAAACCAGTCCC 59.886 55.000 0.00 0.00 0.00 4.46
2595 4631 0.613853 GCCCCTAAAAACCAGTCCCC 60.614 60.000 0.00 0.00 0.00 4.81
2596 4632 0.040646 CCCCTAAAAACCAGTCCCCC 59.959 60.000 0.00 0.00 0.00 5.40
2597 4633 1.081481 CCCTAAAAACCAGTCCCCCT 58.919 55.000 0.00 0.00 0.00 4.79
2598 4634 2.281034 CCCTAAAAACCAGTCCCCCTA 58.719 52.381 0.00 0.00 0.00 3.53
2599 4635 2.241430 CCCTAAAAACCAGTCCCCCTAG 59.759 54.545 0.00 0.00 0.00 3.02
2600 4636 3.187112 CCTAAAAACCAGTCCCCCTAGA 58.813 50.000 0.00 0.00 0.00 2.43
2601 4637 3.200165 CCTAAAAACCAGTCCCCCTAGAG 59.800 52.174 0.00 0.00 0.00 2.43
2602 4638 2.735259 AAAACCAGTCCCCCTAGAGA 57.265 50.000 0.00 0.00 0.00 3.10
2603 4639 1.954035 AAACCAGTCCCCCTAGAGAC 58.046 55.000 0.00 0.00 0.00 3.36
2604 4640 0.790993 AACCAGTCCCCCTAGAGACA 59.209 55.000 9.33 0.00 35.38 3.41
2605 4641 0.041386 ACCAGTCCCCCTAGAGACAC 59.959 60.000 9.33 0.00 35.38 3.67
2606 4642 0.041238 CCAGTCCCCCTAGAGACACA 59.959 60.000 9.33 0.00 35.38 3.72
2607 4643 1.479709 CAGTCCCCCTAGAGACACAG 58.520 60.000 9.33 0.00 35.38 3.66
2608 4644 1.085715 AGTCCCCCTAGAGACACAGT 58.914 55.000 9.33 0.00 35.38 3.55
2609 4645 1.006162 AGTCCCCCTAGAGACACAGTC 59.994 57.143 9.33 0.00 35.38 3.51
2610 4646 0.034380 TCCCCCTAGAGACACAGTCG 60.034 60.000 0.00 0.00 37.67 4.18
2611 4647 0.323542 CCCCCTAGAGACACAGTCGT 60.324 60.000 0.00 0.00 37.67 4.34
2612 4648 1.096416 CCCCTAGAGACACAGTCGTC 58.904 60.000 0.00 0.00 37.67 4.20
2613 4649 0.727970 CCCTAGAGACACAGTCGTCG 59.272 60.000 0.00 0.00 40.98 5.12
2614 4650 1.440708 CCTAGAGACACAGTCGTCGT 58.559 55.000 0.00 0.00 40.98 4.34
2615 4651 1.394227 CCTAGAGACACAGTCGTCGTC 59.606 57.143 0.00 0.00 40.98 4.20
2616 4652 2.067013 CTAGAGACACAGTCGTCGTCA 58.933 52.381 0.00 0.00 40.98 4.35
2617 4653 1.524848 AGAGACACAGTCGTCGTCAT 58.475 50.000 0.00 0.00 40.98 3.06
2618 4654 1.880675 AGAGACACAGTCGTCGTCATT 59.119 47.619 0.00 0.00 40.98 2.57
2619 4655 1.979469 GAGACACAGTCGTCGTCATTG 59.021 52.381 0.00 0.00 40.98 2.82
2620 4656 1.607148 AGACACAGTCGTCGTCATTGA 59.393 47.619 0.00 0.00 40.98 2.57
2621 4657 2.034179 AGACACAGTCGTCGTCATTGAA 59.966 45.455 0.00 0.00 40.98 2.69
2622 4658 2.124903 ACACAGTCGTCGTCATTGAAC 58.875 47.619 0.00 0.00 0.00 3.18
2623 4659 1.455786 CACAGTCGTCGTCATTGAACC 59.544 52.381 0.00 0.00 0.00 3.62
2624 4660 1.067974 ACAGTCGTCGTCATTGAACCA 59.932 47.619 0.00 0.00 0.00 3.67
2625 4661 2.288825 ACAGTCGTCGTCATTGAACCAT 60.289 45.455 0.00 0.00 0.00 3.55
2626 4662 2.736721 CAGTCGTCGTCATTGAACCATT 59.263 45.455 0.00 0.00 0.00 3.16
2627 4663 2.736721 AGTCGTCGTCATTGAACCATTG 59.263 45.455 0.00 0.00 0.00 2.82
2628 4664 2.734606 GTCGTCGTCATTGAACCATTGA 59.265 45.455 0.00 0.00 0.00 2.57
2629 4665 3.185594 GTCGTCGTCATTGAACCATTGAA 59.814 43.478 0.00 0.00 0.00 2.69
2630 4666 3.185594 TCGTCGTCATTGAACCATTGAAC 59.814 43.478 0.00 0.00 0.00 3.18
2631 4667 3.186409 CGTCGTCATTGAACCATTGAACT 59.814 43.478 0.00 0.00 0.00 3.01
2632 4668 4.466828 GTCGTCATTGAACCATTGAACTG 58.533 43.478 0.00 0.00 0.00 3.16
2633 4669 3.501828 TCGTCATTGAACCATTGAACTGG 59.498 43.478 0.00 0.00 42.35 4.00
2641 4677 2.508526 ACCATTGAACTGGTCTCAAGC 58.491 47.619 0.00 0.00 46.79 4.01
2642 4678 2.158623 ACCATTGAACTGGTCTCAAGCA 60.159 45.455 0.00 0.00 46.79 3.91
2643 4679 3.087031 CCATTGAACTGGTCTCAAGCAT 58.913 45.455 0.00 0.00 36.30 3.79
2644 4680 3.128242 CCATTGAACTGGTCTCAAGCATC 59.872 47.826 0.00 0.00 36.30 3.91
2656 4692 5.229423 GTCTCAAGCATCTATCACCAGATC 58.771 45.833 0.00 0.00 32.83 2.75
2657 4693 5.010922 GTCTCAAGCATCTATCACCAGATCT 59.989 44.000 0.00 0.00 32.83 2.75
2660 4696 2.230992 AGCATCTATCACCAGATCTCGC 59.769 50.000 0.00 0.00 32.83 5.03
2661 4697 2.673610 GCATCTATCACCAGATCTCGCC 60.674 54.545 0.00 0.00 32.83 5.54
2662 4698 2.364972 TCTATCACCAGATCTCGCCA 57.635 50.000 0.00 0.00 35.67 5.69
2663 4699 2.881734 TCTATCACCAGATCTCGCCAT 58.118 47.619 0.00 0.00 35.67 4.40
2664 4700 2.822561 TCTATCACCAGATCTCGCCATC 59.177 50.000 0.00 0.00 35.67 3.51
2665 4701 1.417288 ATCACCAGATCTCGCCATCA 58.583 50.000 0.00 0.00 0.00 3.07
2666 4702 0.461548 TCACCAGATCTCGCCATCAC 59.538 55.000 0.00 0.00 0.00 3.06
2667 4703 0.873312 CACCAGATCTCGCCATCACG 60.873 60.000 0.00 0.00 0.00 4.35
2668 4704 1.953138 CCAGATCTCGCCATCACGC 60.953 63.158 0.00 0.00 0.00 5.34
2670 4706 1.227089 AGATCTCGCCATCACGCAC 60.227 57.895 0.00 0.00 0.00 5.34
2671 4707 2.580470 GATCTCGCCATCACGCACG 61.580 63.158 0.00 0.00 0.00 5.34
2677 4713 4.134187 CCATCACGCACGCACGAC 62.134 66.667 4.54 0.00 36.70 4.34
2699 5477 1.957765 GAGTCCTAACCTCGCCACCC 61.958 65.000 0.00 0.00 0.00 4.61
2702 5480 2.598787 CCTAACCTCGCCACCCCAA 61.599 63.158 0.00 0.00 0.00 4.12
2703 5481 1.078426 CTAACCTCGCCACCCCAAG 60.078 63.158 0.00 0.00 0.00 3.61
2704 5482 2.536997 CTAACCTCGCCACCCCAAGG 62.537 65.000 0.00 0.00 40.04 3.61
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 6.800540 TGGAACAATTAGGACAAGTCCAGATC 60.801 42.308 20.52 8.70 44.80 2.75
37 38 7.331026 AGACTTGGAAACGATATTCAGATCAA 58.669 34.615 0.00 0.00 0.00 2.57
116 134 5.579047 ACCAGATGTATTGATTTGTCCCAA 58.421 37.500 0.00 0.00 0.00 4.12
128 146 7.272037 AGAAACGTGAAAAACCAGATGTATT 57.728 32.000 0.00 0.00 0.00 1.89
158 183 7.254852 TGCTTTTGGTCACCGATATTATTTTC 58.745 34.615 0.00 0.00 0.00 2.29
169 194 0.958091 TCCAATGCTTTTGGTCACCG 59.042 50.000 15.69 0.00 40.40 4.94
172 197 4.751767 AGTTTTCCAATGCTTTTGGTCA 57.248 36.364 15.69 4.86 40.40 4.02
177 202 8.839343 CCAAAAGAATAGTTTTCCAATGCTTTT 58.161 29.630 0.00 0.00 34.49 2.27
234 264 2.905075 TCAACCATCCTTCGCACATAG 58.095 47.619 0.00 0.00 0.00 2.23
260 290 8.163408 CCACCTTGTCTATTTATCCATCCATAA 58.837 37.037 0.00 0.00 0.00 1.90
324 354 5.045012 AGCAGCTCAATCATGAAGGATAA 57.955 39.130 0.00 0.00 34.49 1.75
342 372 2.485426 TCTTTTCGATTGGAGCAAGCAG 59.515 45.455 0.00 0.00 29.50 4.24
391 422 3.081804 AGTGAACCGAAAACATCCATCC 58.918 45.455 0.00 0.00 0.00 3.51
544 977 9.658799 CATGTAGGAATATTTGGGTGATAGTAG 57.341 37.037 0.00 0.00 0.00 2.57
545 978 8.100791 GCATGTAGGAATATTTGGGTGATAGTA 58.899 37.037 0.00 0.00 0.00 1.82
546 979 6.942576 GCATGTAGGAATATTTGGGTGATAGT 59.057 38.462 0.00 0.00 0.00 2.12
705 1146 9.206870 CTTTTGCACCTTCATGTACAAATTTAT 57.793 29.630 0.00 0.00 32.94 1.40
713 1154 4.072131 TCTCCTTTTGCACCTTCATGTAC 58.928 43.478 0.00 0.00 0.00 2.90
718 1159 4.104383 AGAATCTCCTTTTGCACCTTCA 57.896 40.909 0.00 0.00 0.00 3.02
721 1162 6.963322 AGTATAAGAATCTCCTTTTGCACCT 58.037 36.000 0.00 0.00 0.00 4.00
833 1293 7.014615 TCCTTCATGTCGATCATATCTTCTTCA 59.985 37.037 0.00 0.00 34.67 3.02
866 1332 6.031471 TGCAATGTCAATTGATTCTCATTCG 58.969 36.000 12.12 11.25 45.17 3.34
867 1333 7.821595 TTGCAATGTCAATTGATTCTCATTC 57.178 32.000 12.12 10.32 45.17 2.67
880 1346 4.566545 ACAAAGTCGATTGCAATGTCAA 57.433 36.364 18.59 0.00 33.52 3.18
885 1351 6.071952 ACCTTGATTACAAAGTCGATTGCAAT 60.072 34.615 12.83 12.83 35.49 3.56
1009 1492 3.942439 GCTCCGGGGGCTATGGAC 61.942 72.222 12.83 0.00 0.00 4.02
1052 1535 6.496144 AGAAGAAGATGGTGATGATGATGA 57.504 37.500 0.00 0.00 0.00 2.92
1054 1537 7.139287 AGAAGAAGAAGATGGTGATGATGAT 57.861 36.000 0.00 0.00 0.00 2.45
1064 1556 4.681744 CGAGGAGAAGAAGAAGAAGATGG 58.318 47.826 0.00 0.00 0.00 3.51
1065 1557 4.111916 GCGAGGAGAAGAAGAAGAAGATG 58.888 47.826 0.00 0.00 0.00 2.90
1066 1558 3.766591 TGCGAGGAGAAGAAGAAGAAGAT 59.233 43.478 0.00 0.00 0.00 2.40
1127 1619 2.992114 ACCGGCAGTCGCTTCTCT 60.992 61.111 0.00 0.00 38.60 3.10
1342 1837 1.327460 CAACGATAAGCCGGTCATGTG 59.673 52.381 1.90 0.00 0.00 3.21
1346 1841 1.448893 GCCAACGATAAGCCGGTCA 60.449 57.895 1.90 0.00 0.00 4.02
1355 1850 2.202878 GAGCGGCAGCCAACGATA 60.203 61.111 13.30 0.00 46.67 2.92
1409 1904 1.133025 GAACTACTACTTACGGCGGCA 59.867 52.381 13.24 0.00 0.00 5.69
1486 1997 1.932156 AACCCCTGCACAGACCAACA 61.932 55.000 0.00 0.00 0.00 3.33
1564 2075 1.376942 CTAGTGCTGCCTGCTGCTT 60.377 57.895 19.48 11.55 43.37 3.91
1596 2107 6.806751 AGAGCCTTAGAAACAAAAGGAAAAC 58.193 36.000 5.31 0.00 44.27 2.43
1647 2172 8.116753 GGAAATTTACTCTGTACATCATCAACG 58.883 37.037 0.00 0.00 0.00 4.10
1648 2173 8.946085 TGGAAATTTACTCTGTACATCATCAAC 58.054 33.333 1.27 0.00 0.00 3.18
1665 2190 6.739331 TGCCTTCTTTTCCTTGGAAATTTA 57.261 33.333 14.66 1.02 0.00 1.40
1715 2328 4.911390 AGACCAAATCCAAGTCGAAGATT 58.089 39.130 0.00 0.00 40.67 2.40
1767 2451 3.874392 ACTGTGCCTGCCATTATTTTC 57.126 42.857 0.00 0.00 0.00 2.29
1795 2479 5.013704 TCAGCTTAGTCAACCAAATCCCTAA 59.986 40.000 0.00 0.00 0.00 2.69
1798 2482 3.686016 TCAGCTTAGTCAACCAAATCCC 58.314 45.455 0.00 0.00 0.00 3.85
1839 2872 5.181748 ACTTGATCAGCTGTATGAAAGGAC 58.818 41.667 14.67 0.00 31.76 3.85
1931 2964 7.500892 TCACACAACTGGTAACTCATTTTGTAT 59.499 33.333 0.00 0.00 37.61 2.29
1933 2966 5.650266 TCACACAACTGGTAACTCATTTTGT 59.350 36.000 0.00 0.00 37.61 2.83
1950 2983 5.880332 GCATAAAGAGGACCTAATCACACAA 59.120 40.000 0.00 0.00 0.00 3.33
2074 4110 0.387622 CTTGGTTGCGATGCTGTTGG 60.388 55.000 0.00 0.00 0.00 3.77
2075 4111 0.592637 TCTTGGTTGCGATGCTGTTG 59.407 50.000 0.00 0.00 0.00 3.33
2076 4112 1.470098 GATCTTGGTTGCGATGCTGTT 59.530 47.619 0.00 0.00 0.00 3.16
2078 4114 0.379669 GGATCTTGGTTGCGATGCTG 59.620 55.000 0.00 0.00 0.00 4.41
2079 4115 0.035152 TGGATCTTGGTTGCGATGCT 60.035 50.000 0.00 0.00 0.00 3.79
2080 4116 0.379669 CTGGATCTTGGTTGCGATGC 59.620 55.000 0.00 0.00 0.00 3.91
2081 4117 1.667724 GTCTGGATCTTGGTTGCGATG 59.332 52.381 0.00 0.00 0.00 3.84
2083 4119 0.976641 AGTCTGGATCTTGGTTGCGA 59.023 50.000 0.00 0.00 0.00 5.10
2084 4120 2.672961 TAGTCTGGATCTTGGTTGCG 57.327 50.000 0.00 0.00 0.00 4.85
2085 4121 4.142609 TGATAGTCTGGATCTTGGTTGC 57.857 45.455 0.00 0.00 0.00 4.17
2086 4122 6.118170 ACATTGATAGTCTGGATCTTGGTTG 58.882 40.000 0.00 0.00 0.00 3.77
2089 4125 5.922053 TGACATTGATAGTCTGGATCTTGG 58.078 41.667 0.00 0.00 36.94 3.61
2090 4126 7.498239 ACAATGACATTGATAGTCTGGATCTTG 59.502 37.037 30.23 3.86 42.83 3.02
2092 4128 7.134362 ACAATGACATTGATAGTCTGGATCT 57.866 36.000 30.23 4.48 42.83 2.75
2093 4129 7.281774 ACAACAATGACATTGATAGTCTGGATC 59.718 37.037 30.23 0.00 42.83 3.36
2094 4130 7.066645 CACAACAATGACATTGATAGTCTGGAT 59.933 37.037 30.23 5.15 42.83 3.41
2095 4131 6.372381 CACAACAATGACATTGATAGTCTGGA 59.628 38.462 30.23 0.00 42.83 3.86
2096 4132 6.403964 CCACAACAATGACATTGATAGTCTGG 60.404 42.308 30.23 19.94 42.83 3.86
2097 4133 6.549061 CCACAACAATGACATTGATAGTCTG 58.451 40.000 30.23 18.53 42.83 3.51
2098 4134 5.124457 GCCACAACAATGACATTGATAGTCT 59.876 40.000 30.23 7.89 42.83 3.24
2099 4135 5.124457 AGCCACAACAATGACATTGATAGTC 59.876 40.000 30.23 15.57 42.83 2.59
2100 4136 5.012239 AGCCACAACAATGACATTGATAGT 58.988 37.500 30.23 21.36 42.83 2.12
2101 4137 5.124297 TCAGCCACAACAATGACATTGATAG 59.876 40.000 30.23 20.83 42.83 2.08
2102 4138 5.008980 TCAGCCACAACAATGACATTGATA 58.991 37.500 30.23 3.34 42.83 2.15
2103 4139 3.827876 TCAGCCACAACAATGACATTGAT 59.172 39.130 30.23 18.61 42.83 2.57
2104 4140 3.220940 TCAGCCACAACAATGACATTGA 58.779 40.909 30.23 5.93 42.83 2.57
2105 4141 3.571571 CTCAGCCACAACAATGACATTG 58.428 45.455 23.62 23.62 45.59 2.82
2107 4143 2.165167 CCTCAGCCACAACAATGACAT 58.835 47.619 0.00 0.00 0.00 3.06
2109 4145 0.883833 CCCTCAGCCACAACAATGAC 59.116 55.000 0.00 0.00 0.00 3.06
2111 4147 1.588082 GCCCTCAGCCACAACAATG 59.412 57.895 0.00 0.00 34.35 2.82
2112 4148 4.102113 GCCCTCAGCCACAACAAT 57.898 55.556 0.00 0.00 34.35 2.71
2124 4160 0.255033 AAAATACCGTCTGGGCCCTC 59.745 55.000 25.70 12.58 40.62 4.30
2125 4161 0.034477 CAAAATACCGTCTGGGCCCT 60.034 55.000 25.70 3.19 40.62 5.19
2127 4163 1.092348 GACAAAATACCGTCTGGGCC 58.908 55.000 0.00 0.00 40.62 5.80
2128 4164 1.092348 GGACAAAATACCGTCTGGGC 58.908 55.000 0.00 0.00 40.62 5.36
2129 4165 2.483014 TGGACAAAATACCGTCTGGG 57.517 50.000 0.00 0.00 40.75 4.45
2130 4166 2.682856 CCATGGACAAAATACCGTCTGG 59.317 50.000 5.56 0.00 42.84 3.86
2131 4167 3.343617 ACCATGGACAAAATACCGTCTG 58.656 45.455 21.47 0.00 32.57 3.51
2132 4168 3.606687 GACCATGGACAAAATACCGTCT 58.393 45.455 21.47 0.00 32.57 4.18
2134 4170 2.307686 AGGACCATGGACAAAATACCGT 59.692 45.455 21.47 0.00 0.00 4.83
2135 4171 2.943033 GAGGACCATGGACAAAATACCG 59.057 50.000 21.47 0.00 0.00 4.02
2136 4172 2.943033 CGAGGACCATGGACAAAATACC 59.057 50.000 21.47 8.09 0.00 2.73
2137 4173 2.354821 GCGAGGACCATGGACAAAATAC 59.645 50.000 21.47 0.00 0.00 1.89
2138 4174 2.639065 GCGAGGACCATGGACAAAATA 58.361 47.619 21.47 0.00 0.00 1.40
2141 4177 1.375396 CGCGAGGACCATGGACAAA 60.375 57.895 21.47 0.00 0.00 2.83
2142 4178 1.613317 ATCGCGAGGACCATGGACAA 61.613 55.000 21.47 0.00 0.00 3.18
2143 4179 0.753848 TATCGCGAGGACCATGGACA 60.754 55.000 21.47 0.00 0.00 4.02
2144 4180 0.387929 TTATCGCGAGGACCATGGAC 59.612 55.000 21.47 13.12 0.00 4.02
2146 4182 1.432514 CATTATCGCGAGGACCATGG 58.567 55.000 16.66 11.19 0.00 3.66
2147 4183 1.000843 TCCATTATCGCGAGGACCATG 59.999 52.381 16.66 11.30 0.00 3.66
2149 4185 1.068588 CTTCCATTATCGCGAGGACCA 59.931 52.381 16.66 0.54 0.00 4.02
2150 4186 1.340248 TCTTCCATTATCGCGAGGACC 59.660 52.381 16.66 0.00 0.00 4.46
2151 4187 2.608261 CCTCTTCCATTATCGCGAGGAC 60.608 54.545 16.66 0.00 40.27 3.85
2153 4189 1.337260 CCCTCTTCCATTATCGCGAGG 60.337 57.143 16.66 10.69 38.17 4.63
2154 4190 1.613925 TCCCTCTTCCATTATCGCGAG 59.386 52.381 16.66 0.00 0.00 5.03
2155 4191 1.613925 CTCCCTCTTCCATTATCGCGA 59.386 52.381 13.09 13.09 0.00 5.87
2156 4192 1.613925 TCTCCCTCTTCCATTATCGCG 59.386 52.381 0.00 0.00 0.00 5.87
2157 4193 2.894126 TCTCTCCCTCTTCCATTATCGC 59.106 50.000 0.00 0.00 0.00 4.58
2158 4194 4.402829 TCTCTCTCCCTCTTCCATTATCG 58.597 47.826 0.00 0.00 0.00 2.92
2159 4195 5.640147 TCTCTCTCTCCCTCTTCCATTATC 58.360 45.833 0.00 0.00 0.00 1.75
2160 4196 5.375354 TCTCTCTCTCTCCCTCTTCCATTAT 59.625 44.000 0.00 0.00 0.00 1.28
2161 4197 4.729370 TCTCTCTCTCTCCCTCTTCCATTA 59.271 45.833 0.00 0.00 0.00 1.90
2162 4198 3.531397 TCTCTCTCTCTCCCTCTTCCATT 59.469 47.826 0.00 0.00 0.00 3.16
2163 4199 3.130450 TCTCTCTCTCTCCCTCTTCCAT 58.870 50.000 0.00 0.00 0.00 3.41
2164 4200 2.509548 CTCTCTCTCTCTCCCTCTTCCA 59.490 54.545 0.00 0.00 0.00 3.53
2165 4201 2.777692 TCTCTCTCTCTCTCCCTCTTCC 59.222 54.545 0.00 0.00 0.00 3.46
2166 4202 3.711704 TCTCTCTCTCTCTCTCCCTCTTC 59.288 52.174 0.00 0.00 0.00 2.87
2167 4203 3.713764 CTCTCTCTCTCTCTCTCCCTCTT 59.286 52.174 0.00 0.00 0.00 2.85
2168 4204 3.051803 TCTCTCTCTCTCTCTCTCCCTCT 60.052 52.174 0.00 0.00 0.00 3.69
2169 4205 3.309296 TCTCTCTCTCTCTCTCTCCCTC 58.691 54.545 0.00 0.00 0.00 4.30
2170 4206 3.051803 TCTCTCTCTCTCTCTCTCTCCCT 60.052 52.174 0.00 0.00 0.00 4.20
2171 4207 3.309296 TCTCTCTCTCTCTCTCTCTCCC 58.691 54.545 0.00 0.00 0.00 4.30
2172 4208 4.219115 TCTCTCTCTCTCTCTCTCTCTCC 58.781 52.174 0.00 0.00 0.00 3.71
2173 4209 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
2174 4210 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
2175 4211 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
2176 4212 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
2177 4213 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
2178 4214 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
2179 4215 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
2180 4216 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
2181 4217 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
2182 4218 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
2183 4219 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
2184 4220 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
2185 4221 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
2186 4222 5.136068 TCTCTCTCTCTCTCTCTCTCTCT 57.864 47.826 0.00 0.00 0.00 3.10
2187 4223 5.538053 TCATCTCTCTCTCTCTCTCTCTCTC 59.462 48.000 0.00 0.00 0.00 3.20
2188 4224 5.462240 TCATCTCTCTCTCTCTCTCTCTCT 58.538 45.833 0.00 0.00 0.00 3.10
2189 4225 5.798125 TCATCTCTCTCTCTCTCTCTCTC 57.202 47.826 0.00 0.00 0.00 3.20
2190 4226 7.862274 TTATCATCTCTCTCTCTCTCTCTCT 57.138 40.000 0.00 0.00 0.00 3.10
2191 4227 7.389053 GGTTTATCATCTCTCTCTCTCTCTCTC 59.611 44.444 0.00 0.00 0.00 3.20
2192 4228 7.227156 GGTTTATCATCTCTCTCTCTCTCTCT 58.773 42.308 0.00 0.00 0.00 3.10
2193 4229 6.147821 CGGTTTATCATCTCTCTCTCTCTCTC 59.852 46.154 0.00 0.00 0.00 3.20
2194 4230 5.997746 CGGTTTATCATCTCTCTCTCTCTCT 59.002 44.000 0.00 0.00 0.00 3.10
2195 4231 5.995282 TCGGTTTATCATCTCTCTCTCTCTC 59.005 44.000 0.00 0.00 0.00 3.20
2196 4232 5.935945 TCGGTTTATCATCTCTCTCTCTCT 58.064 41.667 0.00 0.00 0.00 3.10
2197 4233 6.627395 TTCGGTTTATCATCTCTCTCTCTC 57.373 41.667 0.00 0.00 0.00 3.20
2198 4234 7.432869 CAATTCGGTTTATCATCTCTCTCTCT 58.567 38.462 0.00 0.00 0.00 3.10
2199 4235 6.145371 GCAATTCGGTTTATCATCTCTCTCTC 59.855 42.308 0.00 0.00 0.00 3.20
2200 4236 5.988561 GCAATTCGGTTTATCATCTCTCTCT 59.011 40.000 0.00 0.00 0.00 3.10
2201 4237 5.755375 TGCAATTCGGTTTATCATCTCTCTC 59.245 40.000 0.00 0.00 0.00 3.20
2202 4238 5.674525 TGCAATTCGGTTTATCATCTCTCT 58.325 37.500 0.00 0.00 0.00 3.10
2203 4239 5.991328 TGCAATTCGGTTTATCATCTCTC 57.009 39.130 0.00 0.00 0.00 3.20
2204 4240 6.678900 GCTTTGCAATTCGGTTTATCATCTCT 60.679 38.462 0.00 0.00 0.00 3.10
2205 4241 5.456822 GCTTTGCAATTCGGTTTATCATCTC 59.543 40.000 0.00 0.00 0.00 2.75
2206 4242 5.105797 TGCTTTGCAATTCGGTTTATCATCT 60.106 36.000 0.00 0.00 34.76 2.90
2207 4243 5.101628 TGCTTTGCAATTCGGTTTATCATC 58.898 37.500 0.00 0.00 34.76 2.92
2208 4244 5.070770 TGCTTTGCAATTCGGTTTATCAT 57.929 34.783 0.00 0.00 34.76 2.45
2209 4245 4.511617 TGCTTTGCAATTCGGTTTATCA 57.488 36.364 0.00 0.00 34.76 2.15
2210 4246 5.687285 CCTATGCTTTGCAATTCGGTTTATC 59.313 40.000 0.00 0.00 43.62 1.75
2211 4247 5.591099 CCTATGCTTTGCAATTCGGTTTAT 58.409 37.500 0.00 0.00 43.62 1.40
2212 4248 4.676723 GCCTATGCTTTGCAATTCGGTTTA 60.677 41.667 0.00 0.00 43.62 2.01
2213 4249 3.848726 CCTATGCTTTGCAATTCGGTTT 58.151 40.909 0.00 0.00 43.62 3.27
2214 4250 2.417243 GCCTATGCTTTGCAATTCGGTT 60.417 45.455 0.00 0.00 43.62 4.44
2215 4251 1.134946 GCCTATGCTTTGCAATTCGGT 59.865 47.619 0.00 0.00 43.62 4.69
2216 4252 1.843992 GCCTATGCTTTGCAATTCGG 58.156 50.000 0.00 0.00 43.62 4.30
2228 4264 2.740055 CGCCATCCGAGCCTATGC 60.740 66.667 0.00 0.00 40.02 3.14
2229 4265 3.051210 TCGCCATCCGAGCCTATG 58.949 61.111 0.00 0.00 41.89 2.23
2238 4274 4.101448 AGTGGTGCCTCGCCATCC 62.101 66.667 2.19 0.00 46.11 3.51
2239 4275 2.821366 CAGTGGTGCCTCGCCATC 60.821 66.667 2.19 0.00 46.11 3.51
2240 4276 4.415150 CCAGTGGTGCCTCGCCAT 62.415 66.667 0.00 0.00 46.11 4.40
2243 4279 3.680620 TATGCCAGTGGTGCCTCGC 62.681 63.158 11.74 0.00 0.00 5.03
2244 4280 1.078497 TTATGCCAGTGGTGCCTCG 60.078 57.895 11.74 0.00 0.00 4.63
2245 4281 1.032114 GGTTATGCCAGTGGTGCCTC 61.032 60.000 11.74 0.00 37.17 4.70
2246 4282 1.000896 GGTTATGCCAGTGGTGCCT 60.001 57.895 11.74 0.00 37.17 4.75
2247 4283 1.304052 TGGTTATGCCAGTGGTGCC 60.304 57.895 11.74 6.82 43.61 5.01
2248 4284 4.413928 TGGTTATGCCAGTGGTGC 57.586 55.556 11.74 0.00 43.61 5.01
2255 4291 3.788227 AAGAGTTGACTGGTTATGCCA 57.212 42.857 0.00 0.00 46.95 4.92
2256 4292 4.576463 CCATAAGAGTTGACTGGTTATGCC 59.424 45.833 12.92 0.00 32.91 4.40
2257 4293 5.294552 GTCCATAAGAGTTGACTGGTTATGC 59.705 44.000 12.92 0.00 32.91 3.14
2258 4294 5.817816 GGTCCATAAGAGTTGACTGGTTATG 59.182 44.000 12.06 12.06 33.46 1.90
2259 4295 5.487488 TGGTCCATAAGAGTTGACTGGTTAT 59.513 40.000 0.00 0.00 0.00 1.89
2260 4296 4.841813 TGGTCCATAAGAGTTGACTGGTTA 59.158 41.667 0.00 0.00 0.00 2.85
2261 4297 3.650942 TGGTCCATAAGAGTTGACTGGTT 59.349 43.478 0.00 0.00 0.00 3.67
2262 4298 3.248024 TGGTCCATAAGAGTTGACTGGT 58.752 45.455 0.00 0.00 0.00 4.00
2263 4299 3.981071 TGGTCCATAAGAGTTGACTGG 57.019 47.619 0.00 0.00 0.00 4.00
2264 4300 3.686726 GCTTGGTCCATAAGAGTTGACTG 59.313 47.826 0.00 0.00 0.00 3.51
2265 4301 3.307762 GGCTTGGTCCATAAGAGTTGACT 60.308 47.826 0.00 0.00 0.00 3.41
2266 4302 3.010420 GGCTTGGTCCATAAGAGTTGAC 58.990 50.000 0.00 0.00 0.00 3.18
2267 4303 2.642311 TGGCTTGGTCCATAAGAGTTGA 59.358 45.455 0.00 0.00 0.00 3.18
2268 4304 3.071874 TGGCTTGGTCCATAAGAGTTG 57.928 47.619 0.00 0.00 0.00 3.16
2275 4311 2.711009 CCCTCTTATGGCTTGGTCCATA 59.289 50.000 0.00 0.00 44.60 2.74
2277 4313 0.918983 CCCTCTTATGGCTTGGTCCA 59.081 55.000 0.00 0.00 40.97 4.02
2278 4314 0.919710 ACCCTCTTATGGCTTGGTCC 59.080 55.000 0.00 0.00 0.00 4.46
2279 4315 3.200165 AGTTACCCTCTTATGGCTTGGTC 59.800 47.826 0.00 0.00 0.00 4.02
2280 4316 3.190439 AGTTACCCTCTTATGGCTTGGT 58.810 45.455 0.00 0.00 0.00 3.67
2281 4317 3.809905 GAGTTACCCTCTTATGGCTTGG 58.190 50.000 0.00 0.00 37.22 3.61
2292 4328 2.124411 TGGCCCATAAGAGTTACCCTC 58.876 52.381 0.00 0.00 40.80 4.30
2293 4329 2.241430 GTTGGCCCATAAGAGTTACCCT 59.759 50.000 0.00 0.00 0.00 4.34
2294 4330 2.651455 GTTGGCCCATAAGAGTTACCC 58.349 52.381 0.00 0.00 0.00 3.69
2295 4331 2.025699 TGGTTGGCCCATAAGAGTTACC 60.026 50.000 0.00 0.00 38.72 2.85
2296 4332 3.279434 CTGGTTGGCCCATAAGAGTTAC 58.721 50.000 0.00 0.00 44.15 2.50
2297 4333 2.916934 ACTGGTTGGCCCATAAGAGTTA 59.083 45.455 0.00 0.00 44.15 2.24
2298 4334 1.710809 ACTGGTTGGCCCATAAGAGTT 59.289 47.619 0.00 0.00 44.15 3.01
2299 4335 1.372501 ACTGGTTGGCCCATAAGAGT 58.627 50.000 0.00 0.00 44.15 3.24
2300 4336 2.746472 GCTACTGGTTGGCCCATAAGAG 60.746 54.545 0.00 0.00 44.15 2.85
2301 4337 1.211949 GCTACTGGTTGGCCCATAAGA 59.788 52.381 0.00 0.00 44.15 2.10
2302 4338 1.064758 TGCTACTGGTTGGCCCATAAG 60.065 52.381 0.00 0.00 44.15 1.73
2303 4339 0.995803 TGCTACTGGTTGGCCCATAA 59.004 50.000 0.00 0.00 44.15 1.90
2304 4340 1.133823 CATGCTACTGGTTGGCCCATA 60.134 52.381 0.00 0.00 44.15 2.74
2305 4341 0.396139 CATGCTACTGGTTGGCCCAT 60.396 55.000 0.00 0.00 44.15 4.00
2306 4342 1.001020 CATGCTACTGGTTGGCCCA 60.001 57.895 0.00 0.00 42.51 5.36
2307 4343 1.032114 GTCATGCTACTGGTTGGCCC 61.032 60.000 0.00 0.00 0.00 5.80
2308 4344 0.035056 AGTCATGCTACTGGTTGGCC 60.035 55.000 0.00 0.00 0.00 5.36
2309 4345 1.470098 CAAGTCATGCTACTGGTTGGC 59.530 52.381 0.00 0.00 0.00 4.52
2321 4357 3.655276 AAAAAGAGCAGGCAAGTCATG 57.345 42.857 0.00 0.00 0.00 3.07
2365 4401 9.793259 AGGACTCTTTCACTAAAATACAAATCA 57.207 29.630 0.00 0.00 0.00 2.57
2371 4407 9.453325 CGATCTAGGACTCTTTCACTAAAATAC 57.547 37.037 0.00 0.00 0.00 1.89
2372 4408 9.404848 TCGATCTAGGACTCTTTCACTAAAATA 57.595 33.333 0.00 0.00 0.00 1.40
2373 4409 8.294954 TCGATCTAGGACTCTTTCACTAAAAT 57.705 34.615 0.00 0.00 0.00 1.82
2374 4410 7.698506 TCGATCTAGGACTCTTTCACTAAAA 57.301 36.000 0.00 0.00 0.00 1.52
2375 4411 7.883391 ATCGATCTAGGACTCTTTCACTAAA 57.117 36.000 0.00 0.00 0.00 1.85
2376 4412 7.883391 AATCGATCTAGGACTCTTTCACTAA 57.117 36.000 0.00 0.00 0.00 2.24
2378 4414 9.575868 TTATAATCGATCTAGGACTCTTTCACT 57.424 33.333 0.00 0.00 0.00 3.41
2386 4422 9.968870 GTGAACTTTTATAATCGATCTAGGACT 57.031 33.333 0.00 0.00 0.00 3.85
2387 4423 9.194271 GGTGAACTTTTATAATCGATCTAGGAC 57.806 37.037 0.00 0.00 0.00 3.85
2388 4424 8.920174 TGGTGAACTTTTATAATCGATCTAGGA 58.080 33.333 0.00 0.00 0.00 2.94
2389 4425 9.197694 CTGGTGAACTTTTATAATCGATCTAGG 57.802 37.037 0.00 0.00 0.00 3.02
2390 4426 9.967346 TCTGGTGAACTTTTATAATCGATCTAG 57.033 33.333 0.00 0.00 0.00 2.43
2392 4428 9.667107 TTTCTGGTGAACTTTTATAATCGATCT 57.333 29.630 0.00 0.00 31.02 2.75
2401 4437 8.584157 TGCATTGTATTTCTGGTGAACTTTTAT 58.416 29.630 0.00 0.00 31.02 1.40
2402 4438 7.865385 GTGCATTGTATTTCTGGTGAACTTTTA 59.135 33.333 0.00 0.00 31.02 1.52
2403 4439 6.701400 GTGCATTGTATTTCTGGTGAACTTTT 59.299 34.615 0.00 0.00 31.02 2.27
2404 4440 6.215845 GTGCATTGTATTTCTGGTGAACTTT 58.784 36.000 0.00 0.00 31.02 2.66
2405 4441 5.278957 GGTGCATTGTATTTCTGGTGAACTT 60.279 40.000 0.00 0.00 31.02 2.66
2406 4442 4.218417 GGTGCATTGTATTTCTGGTGAACT 59.782 41.667 0.00 0.00 31.02 3.01
2407 4443 4.218417 AGGTGCATTGTATTTCTGGTGAAC 59.782 41.667 0.00 0.00 31.02 3.18
2408 4444 4.218200 CAGGTGCATTGTATTTCTGGTGAA 59.782 41.667 0.00 0.00 0.00 3.18
2409 4445 3.758023 CAGGTGCATTGTATTTCTGGTGA 59.242 43.478 0.00 0.00 0.00 4.02
2410 4446 3.758023 TCAGGTGCATTGTATTTCTGGTG 59.242 43.478 0.00 0.00 0.00 4.17
2411 4447 4.032960 TCAGGTGCATTGTATTTCTGGT 57.967 40.909 0.00 0.00 0.00 4.00
2412 4448 5.389859 TTTCAGGTGCATTGTATTTCTGG 57.610 39.130 0.00 0.00 0.00 3.86
2438 4474 9.170890 TCTAGGGACCATGATGTAATTTCTATT 57.829 33.333 0.00 0.00 0.00 1.73
2439 4475 8.598041 GTCTAGGGACCATGATGTAATTTCTAT 58.402 37.037 0.00 0.00 36.53 1.98
2440 4476 7.255836 CGTCTAGGGACCATGATGTAATTTCTA 60.256 40.741 0.00 0.00 39.15 2.10
2441 4477 6.463049 CGTCTAGGGACCATGATGTAATTTCT 60.463 42.308 0.00 0.00 39.15 2.52
2442 4478 5.696724 CGTCTAGGGACCATGATGTAATTTC 59.303 44.000 0.00 0.00 39.15 2.17
2443 4479 5.365605 TCGTCTAGGGACCATGATGTAATTT 59.634 40.000 0.00 0.00 39.15 1.82
2444 4480 4.899457 TCGTCTAGGGACCATGATGTAATT 59.101 41.667 0.00 0.00 39.15 1.40
2445 4481 4.281182 GTCGTCTAGGGACCATGATGTAAT 59.719 45.833 0.00 0.00 39.15 1.89
2446 4482 3.635373 GTCGTCTAGGGACCATGATGTAA 59.365 47.826 0.00 0.00 39.15 2.41
2447 4483 3.220110 GTCGTCTAGGGACCATGATGTA 58.780 50.000 0.00 0.00 39.15 2.29
2448 4484 2.032620 GTCGTCTAGGGACCATGATGT 58.967 52.381 0.00 0.00 39.15 3.06
2449 4485 2.802787 GTCGTCTAGGGACCATGATG 57.197 55.000 0.00 0.00 39.15 3.07
2456 4492 0.971386 TGTTTGGGTCGTCTAGGGAC 59.029 55.000 6.37 6.37 38.97 4.46
2457 4493 1.345415 GTTGTTTGGGTCGTCTAGGGA 59.655 52.381 0.00 0.00 0.00 4.20
2458 4494 1.804601 GTTGTTTGGGTCGTCTAGGG 58.195 55.000 0.00 0.00 0.00 3.53
2459 4495 1.425412 CGTTGTTTGGGTCGTCTAGG 58.575 55.000 0.00 0.00 0.00 3.02
2460 4496 0.788391 GCGTTGTTTGGGTCGTCTAG 59.212 55.000 0.00 0.00 0.00 2.43
2461 4497 0.600782 GGCGTTGTTTGGGTCGTCTA 60.601 55.000 0.00 0.00 0.00 2.59
2462 4498 1.890510 GGCGTTGTTTGGGTCGTCT 60.891 57.895 0.00 0.00 0.00 4.18
2463 4499 0.600782 TAGGCGTTGTTTGGGTCGTC 60.601 55.000 0.00 0.00 0.00 4.20
2464 4500 0.881600 GTAGGCGTTGTTTGGGTCGT 60.882 55.000 0.00 0.00 0.00 4.34
2465 4501 1.571215 GGTAGGCGTTGTTTGGGTCG 61.571 60.000 0.00 0.00 0.00 4.79
2466 4502 0.535553 TGGTAGGCGTTGTTTGGGTC 60.536 55.000 0.00 0.00 0.00 4.46
2467 4503 0.820482 GTGGTAGGCGTTGTTTGGGT 60.820 55.000 0.00 0.00 0.00 4.51
2468 4504 0.536460 AGTGGTAGGCGTTGTTTGGG 60.536 55.000 0.00 0.00 0.00 4.12
2469 4505 0.591170 CAGTGGTAGGCGTTGTTTGG 59.409 55.000 0.00 0.00 0.00 3.28
2470 4506 0.591170 CCAGTGGTAGGCGTTGTTTG 59.409 55.000 0.00 0.00 0.00 2.93
2471 4507 0.536460 CCCAGTGGTAGGCGTTGTTT 60.536 55.000 8.74 0.00 0.00 2.83
2472 4508 1.072505 CCCAGTGGTAGGCGTTGTT 59.927 57.895 8.74 0.00 0.00 2.83
2473 4509 1.827399 CTCCCAGTGGTAGGCGTTGT 61.827 60.000 8.74 0.00 0.00 3.32
2474 4510 1.079127 CTCCCAGTGGTAGGCGTTG 60.079 63.158 8.74 0.00 0.00 4.10
2475 4511 1.229082 TCTCCCAGTGGTAGGCGTT 60.229 57.895 8.74 0.00 0.00 4.84
2476 4512 1.682684 CTCTCCCAGTGGTAGGCGT 60.683 63.158 8.74 0.00 0.00 5.68
2477 4513 1.379977 TCTCTCCCAGTGGTAGGCG 60.380 63.158 8.74 0.00 0.00 5.52
2478 4514 1.668101 CGTCTCTCCCAGTGGTAGGC 61.668 65.000 8.74 3.23 0.00 3.93
2479 4515 0.323542 ACGTCTCTCCCAGTGGTAGG 60.324 60.000 8.74 0.00 0.00 3.18
2480 4516 1.096416 GACGTCTCTCCCAGTGGTAG 58.904 60.000 8.70 0.90 0.00 3.18
2481 4517 0.675837 CGACGTCTCTCCCAGTGGTA 60.676 60.000 14.70 0.00 0.00 3.25
2482 4518 1.972223 CGACGTCTCTCCCAGTGGT 60.972 63.158 14.70 0.00 0.00 4.16
2483 4519 1.674651 TCGACGTCTCTCCCAGTGG 60.675 63.158 14.70 0.63 0.00 4.00
2484 4520 1.235281 TGTCGACGTCTCTCCCAGTG 61.235 60.000 14.70 0.00 0.00 3.66
2485 4521 1.072678 TGTCGACGTCTCTCCCAGT 59.927 57.895 14.70 0.00 0.00 4.00
2486 4522 1.502640 GTGTCGACGTCTCTCCCAG 59.497 63.158 14.70 0.00 0.00 4.45
2487 4523 2.322830 CGTGTCGACGTCTCTCCCA 61.323 63.158 14.70 0.00 40.91 4.37
2488 4524 2.479650 CGTGTCGACGTCTCTCCC 59.520 66.667 14.70 0.00 40.91 4.30
2509 4545 2.377628 TATTAGGGAAGCGGCGGCAG 62.378 60.000 19.21 0.00 43.41 4.85
2510 4546 2.377628 CTATTAGGGAAGCGGCGGCA 62.378 60.000 19.21 0.00 43.41 5.69
2511 4547 1.668151 CTATTAGGGAAGCGGCGGC 60.668 63.158 9.78 8.43 40.37 6.53
2512 4548 0.038159 CTCTATTAGGGAAGCGGCGG 60.038 60.000 9.78 0.00 0.00 6.13
2513 4549 0.667792 GCTCTATTAGGGAAGCGGCG 60.668 60.000 0.51 0.51 0.00 6.46
2514 4550 0.320858 GGCTCTATTAGGGAAGCGGC 60.321 60.000 0.00 0.00 0.00 6.53
2515 4551 1.001406 CTGGCTCTATTAGGGAAGCGG 59.999 57.143 0.00 0.00 0.00 5.52
2516 4552 1.606737 GCTGGCTCTATTAGGGAAGCG 60.607 57.143 0.00 0.00 0.00 4.68
2517 4553 1.271108 GGCTGGCTCTATTAGGGAAGC 60.271 57.143 9.21 9.21 0.00 3.86
2518 4554 2.334023 AGGCTGGCTCTATTAGGGAAG 58.666 52.381 0.00 0.00 0.00 3.46
2519 4555 2.496679 AGGCTGGCTCTATTAGGGAA 57.503 50.000 0.00 0.00 0.00 3.97
2520 4556 2.496679 AAGGCTGGCTCTATTAGGGA 57.503 50.000 3.48 0.00 0.00 4.20
2521 4557 2.303311 GGTAAGGCTGGCTCTATTAGGG 59.697 54.545 3.48 0.00 0.00 3.53
2522 4558 2.303311 GGGTAAGGCTGGCTCTATTAGG 59.697 54.545 3.48 0.00 0.00 2.69
2523 4559 2.972713 TGGGTAAGGCTGGCTCTATTAG 59.027 50.000 3.48 0.00 0.00 1.73
2524 4560 2.704065 GTGGGTAAGGCTGGCTCTATTA 59.296 50.000 3.48 0.00 0.00 0.98
2525 4561 1.490910 GTGGGTAAGGCTGGCTCTATT 59.509 52.381 3.48 0.00 0.00 1.73
2526 4562 1.132500 GTGGGTAAGGCTGGCTCTAT 58.868 55.000 3.48 0.00 0.00 1.98
2527 4563 0.042731 AGTGGGTAAGGCTGGCTCTA 59.957 55.000 3.48 0.00 0.00 2.43
2528 4564 1.229658 AGTGGGTAAGGCTGGCTCT 60.230 57.895 3.48 0.00 0.00 4.09
2529 4565 1.078143 CAGTGGGTAAGGCTGGCTC 60.078 63.158 3.48 0.00 0.00 4.70
2530 4566 0.916358 ATCAGTGGGTAAGGCTGGCT 60.916 55.000 0.00 0.00 0.00 4.75
2531 4567 0.749454 CATCAGTGGGTAAGGCTGGC 60.749 60.000 0.00 0.00 0.00 4.85
2532 4568 0.911769 TCATCAGTGGGTAAGGCTGG 59.088 55.000 0.00 0.00 0.00 4.85
2533 4569 1.278985 TGTCATCAGTGGGTAAGGCTG 59.721 52.381 0.00 0.00 0.00 4.85
2534 4570 1.556911 CTGTCATCAGTGGGTAAGGCT 59.443 52.381 0.00 0.00 36.97 4.58
2535 4571 2.014068 GCTGTCATCAGTGGGTAAGGC 61.014 57.143 0.00 0.00 43.05 4.35
2536 4572 1.407437 GGCTGTCATCAGTGGGTAAGG 60.407 57.143 0.00 0.00 43.05 2.69
2537 4573 1.740380 CGGCTGTCATCAGTGGGTAAG 60.740 57.143 0.00 0.00 43.05 2.34
2538 4574 0.249120 CGGCTGTCATCAGTGGGTAA 59.751 55.000 0.00 0.00 43.05 2.85
2539 4575 0.613572 TCGGCTGTCATCAGTGGGTA 60.614 55.000 0.00 0.00 43.05 3.69
2540 4576 1.892819 CTCGGCTGTCATCAGTGGGT 61.893 60.000 0.00 0.00 43.05 4.51
2541 4577 1.153489 CTCGGCTGTCATCAGTGGG 60.153 63.158 0.00 0.00 43.05 4.61
2542 4578 0.247460 TTCTCGGCTGTCATCAGTGG 59.753 55.000 0.00 0.00 43.05 4.00
2543 4579 1.067283 ACTTCTCGGCTGTCATCAGTG 60.067 52.381 0.00 0.00 43.05 3.66
2544 4580 1.203523 GACTTCTCGGCTGTCATCAGT 59.796 52.381 0.00 0.00 43.05 3.41
2545 4581 1.476085 AGACTTCTCGGCTGTCATCAG 59.524 52.381 0.00 0.00 43.87 2.90
2546 4582 1.550327 AGACTTCTCGGCTGTCATCA 58.450 50.000 0.00 0.00 33.56 3.07
2547 4583 2.094494 TGAAGACTTCTCGGCTGTCATC 60.094 50.000 16.02 0.00 33.56 2.92
2548 4584 1.895798 TGAAGACTTCTCGGCTGTCAT 59.104 47.619 16.02 0.00 33.56 3.06
2549 4585 1.328279 TGAAGACTTCTCGGCTGTCA 58.672 50.000 16.02 0.00 33.56 3.58
2550 4586 2.266554 CATGAAGACTTCTCGGCTGTC 58.733 52.381 16.02 0.00 0.00 3.51
2551 4587 1.674221 GCATGAAGACTTCTCGGCTGT 60.674 52.381 16.02 0.00 0.00 4.40
2552 4588 1.005340 GCATGAAGACTTCTCGGCTG 58.995 55.000 16.02 7.18 0.00 4.85
2553 4589 0.610174 TGCATGAAGACTTCTCGGCT 59.390 50.000 16.02 0.00 0.00 5.52
2554 4590 0.723981 GTGCATGAAGACTTCTCGGC 59.276 55.000 16.02 15.45 0.00 5.54
2555 4591 0.994995 CGTGCATGAAGACTTCTCGG 59.005 55.000 16.02 6.82 0.00 4.63
2556 4592 1.388093 CACGTGCATGAAGACTTCTCG 59.612 52.381 14.17 13.57 0.00 4.04
2557 4593 1.127582 GCACGTGCATGAAGACTTCTC 59.872 52.381 34.52 0.00 41.59 2.87
2558 4594 1.151668 GCACGTGCATGAAGACTTCT 58.848 50.000 34.52 0.00 41.59 2.85
2559 4595 0.166814 GGCACGTGCATGAAGACTTC 59.833 55.000 38.60 15.88 44.36 3.01
2560 4596 1.237285 GGGCACGTGCATGAAGACTT 61.237 55.000 38.60 0.00 44.36 3.01
2561 4597 1.672356 GGGCACGTGCATGAAGACT 60.672 57.895 38.60 0.00 44.36 3.24
2562 4598 2.690778 GGGGCACGTGCATGAAGAC 61.691 63.158 38.60 20.85 44.36 3.01
2563 4599 1.549243 TAGGGGCACGTGCATGAAGA 61.549 55.000 38.60 17.55 44.36 2.87
2564 4600 0.676466 TTAGGGGCACGTGCATGAAG 60.676 55.000 38.60 5.84 44.36 3.02
2565 4601 0.250945 TTTAGGGGCACGTGCATGAA 60.251 50.000 38.60 23.66 44.36 2.57
2566 4602 0.250945 TTTTAGGGGCACGTGCATGA 60.251 50.000 38.60 19.55 44.36 3.07
2567 4603 0.600557 TTTTTAGGGGCACGTGCATG 59.399 50.000 38.60 3.82 44.36 4.06
2568 4604 0.601057 GTTTTTAGGGGCACGTGCAT 59.399 50.000 38.60 26.23 44.36 3.96
2569 4605 1.457009 GGTTTTTAGGGGCACGTGCA 61.457 55.000 38.60 18.47 44.36 4.57
2570 4606 1.287815 GGTTTTTAGGGGCACGTGC 59.712 57.895 32.15 32.15 41.14 5.34
2571 4607 0.596082 CTGGTTTTTAGGGGCACGTG 59.404 55.000 12.28 12.28 0.00 4.49
2572 4608 0.184211 ACTGGTTTTTAGGGGCACGT 59.816 50.000 0.00 0.00 0.00 4.49
2573 4609 0.879090 GACTGGTTTTTAGGGGCACG 59.121 55.000 0.00 0.00 0.00 5.34
2574 4610 1.254026 GGACTGGTTTTTAGGGGCAC 58.746 55.000 0.00 0.00 0.00 5.01
2575 4611 0.113580 GGGACTGGTTTTTAGGGGCA 59.886 55.000 0.00 0.00 0.00 5.36
2576 4612 0.613853 GGGGACTGGTTTTTAGGGGC 60.614 60.000 0.00 0.00 0.00 5.80
2577 4613 0.040646 GGGGGACTGGTTTTTAGGGG 59.959 60.000 0.00 0.00 0.00 4.79
2578 4614 1.081481 AGGGGGACTGGTTTTTAGGG 58.919 55.000 0.00 0.00 0.00 3.53
2579 4615 3.187112 TCTAGGGGGACTGGTTTTTAGG 58.813 50.000 0.00 0.00 0.00 2.69
2580 4616 4.081031 GTCTCTAGGGGGACTGGTTTTTAG 60.081 50.000 0.00 0.00 0.00 1.85
2581 4617 3.842436 GTCTCTAGGGGGACTGGTTTTTA 59.158 47.826 0.00 0.00 0.00 1.52
2582 4618 2.643304 GTCTCTAGGGGGACTGGTTTTT 59.357 50.000 0.00 0.00 0.00 1.94
2583 4619 2.267192 GTCTCTAGGGGGACTGGTTTT 58.733 52.381 0.00 0.00 0.00 2.43
2584 4620 1.151413 TGTCTCTAGGGGGACTGGTTT 59.849 52.381 10.85 0.00 34.01 3.27
2585 4621 0.790993 TGTCTCTAGGGGGACTGGTT 59.209 55.000 10.85 0.00 34.01 3.67
2586 4622 0.041386 GTGTCTCTAGGGGGACTGGT 59.959 60.000 10.85 0.00 34.01 4.00
2587 4623 0.041238 TGTGTCTCTAGGGGGACTGG 59.959 60.000 10.85 0.00 34.01 4.00
2588 4624 1.272760 ACTGTGTCTCTAGGGGGACTG 60.273 57.143 10.85 5.55 34.01 3.51
2589 4625 1.006162 GACTGTGTCTCTAGGGGGACT 59.994 57.143 10.85 0.00 34.01 3.85
2590 4626 1.476477 GACTGTGTCTCTAGGGGGAC 58.524 60.000 0.00 0.00 0.00 4.46
2591 4627 0.034380 CGACTGTGTCTCTAGGGGGA 60.034 60.000 0.00 0.00 0.00 4.81
2592 4628 0.323542 ACGACTGTGTCTCTAGGGGG 60.324 60.000 0.00 0.00 0.00 5.40
2593 4629 1.096416 GACGACTGTGTCTCTAGGGG 58.904 60.000 0.00 0.00 35.95 4.79
2594 4630 0.727970 CGACGACTGTGTCTCTAGGG 59.272 60.000 0.00 0.00 36.71 3.53
2595 4631 1.394227 GACGACGACTGTGTCTCTAGG 59.606 57.143 0.00 0.00 36.71 3.02
2596 4632 2.067013 TGACGACGACTGTGTCTCTAG 58.933 52.381 0.00 0.00 36.71 2.43
2597 4633 2.159327 TGACGACGACTGTGTCTCTA 57.841 50.000 0.00 0.00 36.71 2.43
2598 4634 1.524848 ATGACGACGACTGTGTCTCT 58.475 50.000 0.00 0.00 36.71 3.10
2599 4635 1.979469 CAATGACGACGACTGTGTCTC 59.021 52.381 0.00 0.00 36.71 3.36
2600 4636 1.607148 TCAATGACGACGACTGTGTCT 59.393 47.619 0.00 0.00 36.71 3.41
2601 4637 2.046283 TCAATGACGACGACTGTGTC 57.954 50.000 0.00 0.00 35.49 3.67
2602 4638 2.124903 GTTCAATGACGACGACTGTGT 58.875 47.619 0.00 0.00 0.00 3.72
2603 4639 1.455786 GGTTCAATGACGACGACTGTG 59.544 52.381 0.00 0.00 0.00 3.66
2604 4640 1.067974 TGGTTCAATGACGACGACTGT 59.932 47.619 0.00 0.00 0.00 3.55
2605 4641 1.778334 TGGTTCAATGACGACGACTG 58.222 50.000 0.00 0.00 0.00 3.51
2606 4642 2.736721 CAATGGTTCAATGACGACGACT 59.263 45.455 0.00 0.00 0.00 4.18
2607 4643 2.734606 TCAATGGTTCAATGACGACGAC 59.265 45.455 0.00 0.00 0.00 4.34
2608 4644 3.033368 TCAATGGTTCAATGACGACGA 57.967 42.857 0.00 0.00 0.00 4.20
2609 4645 3.186409 AGTTCAATGGTTCAATGACGACG 59.814 43.478 0.00 0.00 0.00 5.12
2610 4646 4.466828 CAGTTCAATGGTTCAATGACGAC 58.533 43.478 0.00 0.00 0.00 4.34
2611 4647 3.501828 CCAGTTCAATGGTTCAATGACGA 59.498 43.478 0.00 0.00 35.47 4.20
2612 4648 3.825308 CCAGTTCAATGGTTCAATGACG 58.175 45.455 0.00 0.00 35.47 4.35
2622 4658 2.507484 TGCTTGAGACCAGTTCAATGG 58.493 47.619 0.00 0.00 46.47 3.16
2623 4659 4.008330 AGATGCTTGAGACCAGTTCAATG 58.992 43.478 0.00 0.00 34.33 2.82
2624 4660 4.298103 AGATGCTTGAGACCAGTTCAAT 57.702 40.909 0.00 0.00 34.33 2.57
2625 4661 3.777106 AGATGCTTGAGACCAGTTCAA 57.223 42.857 0.00 0.00 33.76 2.69
2626 4662 4.467438 TGATAGATGCTTGAGACCAGTTCA 59.533 41.667 0.00 0.00 0.00 3.18
2627 4663 4.808364 GTGATAGATGCTTGAGACCAGTTC 59.192 45.833 0.00 0.00 0.00 3.01
2628 4664 4.383552 GGTGATAGATGCTTGAGACCAGTT 60.384 45.833 0.00 0.00 0.00 3.16
2629 4665 3.133721 GGTGATAGATGCTTGAGACCAGT 59.866 47.826 0.00 0.00 0.00 4.00
2630 4666 3.133542 TGGTGATAGATGCTTGAGACCAG 59.866 47.826 0.00 0.00 0.00 4.00
2631 4667 3.106827 TGGTGATAGATGCTTGAGACCA 58.893 45.455 0.00 0.00 0.00 4.02
2632 4668 3.386078 TCTGGTGATAGATGCTTGAGACC 59.614 47.826 0.00 0.00 0.00 3.85
2633 4669 4.662468 TCTGGTGATAGATGCTTGAGAC 57.338 45.455 0.00 0.00 0.00 3.36
2634 4670 5.146298 AGATCTGGTGATAGATGCTTGAGA 58.854 41.667 0.00 0.00 37.53 3.27
2635 4671 5.471556 AGATCTGGTGATAGATGCTTGAG 57.528 43.478 0.00 0.00 37.53 3.02
2636 4672 4.022503 CGAGATCTGGTGATAGATGCTTGA 60.023 45.833 0.00 0.00 37.53 3.02
2637 4673 4.236147 CGAGATCTGGTGATAGATGCTTG 58.764 47.826 0.00 0.00 37.53 4.01
2638 4674 3.305950 GCGAGATCTGGTGATAGATGCTT 60.306 47.826 0.00 0.00 37.53 3.91
2639 4675 2.230992 GCGAGATCTGGTGATAGATGCT 59.769 50.000 0.00 0.00 37.53 3.79
2640 4676 2.605030 GCGAGATCTGGTGATAGATGC 58.395 52.381 0.00 0.00 37.53 3.91
2641 4677 2.560105 TGGCGAGATCTGGTGATAGATG 59.440 50.000 0.00 0.00 37.53 2.90
2642 4678 2.881734 TGGCGAGATCTGGTGATAGAT 58.118 47.619 0.00 0.00 40.02 1.98
2643 4679 2.364972 TGGCGAGATCTGGTGATAGA 57.635 50.000 0.00 0.00 32.19 1.98
2644 4680 2.560105 TGATGGCGAGATCTGGTGATAG 59.440 50.000 0.00 0.00 32.19 2.08
2660 4696 4.134187 GTCGTGCGTGCGTGATGG 62.134 66.667 1.25 0.00 0.00 3.51
2661 4697 4.468545 CGTCGTGCGTGCGTGATG 62.469 66.667 1.25 0.00 35.54 3.07
2662 4698 4.693525 TCGTCGTGCGTGCGTGAT 62.694 61.111 0.00 0.00 42.13 3.06
2667 4703 3.166630 GACTCTCGTCGTGCGTGC 61.167 66.667 0.00 0.00 42.13 5.34
2668 4704 1.632948 TAGGACTCTCGTCGTGCGTG 61.633 60.000 0.00 1.07 41.16 5.34
2670 4706 0.520827 GTTAGGACTCTCGTCGTGCG 60.521 60.000 0.00 0.00 41.16 5.34
2671 4707 0.179169 GGTTAGGACTCTCGTCGTGC 60.179 60.000 0.00 0.00 41.16 5.34
2672 4708 1.397692 GAGGTTAGGACTCTCGTCGTG 59.602 57.143 0.00 0.00 41.16 4.35
2673 4709 1.736612 GAGGTTAGGACTCTCGTCGT 58.263 55.000 0.00 0.00 41.16 4.34
2674 4710 0.651551 CGAGGTTAGGACTCTCGTCG 59.348 60.000 0.00 0.00 41.16 5.12
2676 4712 1.031029 GGCGAGGTTAGGACTCTCGT 61.031 60.000 12.45 0.00 42.93 4.18
2677 4713 1.030488 TGGCGAGGTTAGGACTCTCG 61.030 60.000 7.49 7.49 43.38 4.04
2678 4714 0.456628 GTGGCGAGGTTAGGACTCTC 59.543 60.000 0.00 0.00 32.83 3.20
2680 4716 1.516423 GGTGGCGAGGTTAGGACTC 59.484 63.158 0.00 0.00 0.00 3.36
2681 4717 1.988406 GGGTGGCGAGGTTAGGACT 60.988 63.158 0.00 0.00 0.00 3.85
2682 4718 2.582978 GGGTGGCGAGGTTAGGAC 59.417 66.667 0.00 0.00 0.00 3.85
2683 4719 2.686106 GGGGTGGCGAGGTTAGGA 60.686 66.667 0.00 0.00 0.00 2.94
2684 4720 2.536997 CTTGGGGTGGCGAGGTTAGG 62.537 65.000 0.00 0.00 0.00 2.69
2685 4721 1.078426 CTTGGGGTGGCGAGGTTAG 60.078 63.158 0.00 0.00 0.00 2.34
2687 4723 3.966543 CCTTGGGGTGGCGAGGTT 61.967 66.667 0.00 0.00 0.00 3.50


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.