Multiple sequence alignment - TraesCS6D01G008500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G008500 chr6D 100.000 2495 0 0 1 2495 3461372 3458878 0.000000e+00 4608.0
1 TraesCS6D01G008500 chr6D 80.447 537 66 20 798 1312 3418540 3418021 8.430000e-100 374.0
2 TraesCS6D01G008500 chr6D 85.714 133 14 4 274 404 3420098 3419969 4.330000e-28 135.0
3 TraesCS6D01G008500 chr6D 75.214 234 33 22 818 1036 3427324 3427101 1.230000e-13 87.9
4 TraesCS6D01G008500 chr6B 92.788 1955 96 9 553 2495 6790430 6788509 0.000000e+00 2787.0
5 TraesCS6D01G008500 chr6B 80.524 534 71 21 798 1312 6786741 6786222 1.810000e-101 379.0
6 TraesCS6D01G008500 chr6B 86.574 216 12 8 179 377 6791040 6790825 3.230000e-54 222.0
7 TraesCS6D01G008500 chr6B 87.425 167 14 2 4 166 6791186 6791023 4.240000e-43 185.0
8 TraesCS6D01G008500 chr6B 86.395 147 7 4 425 571 6790826 6790693 5.560000e-32 148.0
9 TraesCS6D01G008500 chr6A 93.081 925 45 10 669 1591 2234736 2233829 0.000000e+00 1336.0
10 TraesCS6D01G008500 chr6A 88.650 511 29 9 181 663 2245186 2244677 1.650000e-166 595.0
11 TraesCS6D01G008500 chr6A 91.743 109 8 1 1638 1745 2233819 2233711 1.550000e-32 150.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G008500 chr6D 3458878 3461372 2494 True 4608.0 4608 100.0000 1 2495 1 chr6D.!!$R2 2494
1 TraesCS6D01G008500 chr6D 3418021 3420098 2077 True 254.5 374 83.0805 274 1312 2 chr6D.!!$R3 1038
2 TraesCS6D01G008500 chr6B 6786222 6791186 4964 True 744.2 2787 86.7412 4 2495 5 chr6B.!!$R1 2491
3 TraesCS6D01G008500 chr6A 2233711 2234736 1025 True 743.0 1336 92.4120 669 1745 2 chr6A.!!$R2 1076
4 TraesCS6D01G008500 chr6A 2244677 2245186 509 True 595.0 595 88.6500 181 663 1 chr6A.!!$R1 482

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
234 239 0.1023 AGTTGGCAACCAAAGCGTTC 59.898 50.0 25.81 0.0 45.73 3.95 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1795 3246 0.315886 TTAGCTGACTCGGCGAAACA 59.684 50.0 12.13 12.88 41.21 2.83 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
57 58 3.546724 TGGTTTGAGAAATGTTGTCCGA 58.453 40.909 0.00 0.00 0.00 4.55
132 137 7.148154 GCATTTTGTGTGTGTATTATACTCCCA 60.148 37.037 3.92 0.00 0.00 4.37
138 143 8.271458 TGTGTGTGTATTATACTCCCATGATTT 58.729 33.333 3.92 0.00 0.00 2.17
142 147 9.506018 TGTGTATTATACTCCCATGATTTGATG 57.494 33.333 3.92 0.00 0.00 3.07
150 155 6.073314 ACTCCCATGATTTGATGGATAAAGG 58.927 40.000 0.00 0.00 45.24 3.11
231 236 2.500509 TAAAGTTGGCAACCAAAGCG 57.499 45.000 25.81 0.00 45.73 4.68
234 239 0.102300 AGTTGGCAACCAAAGCGTTC 59.898 50.000 25.81 0.00 45.73 3.95
240 245 1.921230 GCAACCAAAGCGTTCGAAAAA 59.079 42.857 0.00 0.00 0.00 1.94
244 249 5.569823 GCAACCAAAGCGTTCGAAAAATATA 59.430 36.000 0.00 0.00 0.00 0.86
249 254 7.325097 ACCAAAGCGTTCGAAAAATATACTTTG 59.675 33.333 0.00 11.41 40.52 2.77
293 319 2.492881 CTGTGCAAGGCATGGTGAAATA 59.507 45.455 0.00 0.00 41.91 1.40
298 324 6.105333 GTGCAAGGCATGGTGAAATAAAATA 58.895 36.000 0.00 0.00 41.91 1.40
401 442 1.147153 GCTCCCTCCGATGGAAAGG 59.853 63.158 0.00 0.00 0.00 3.11
405 446 0.107165 CCCTCCGATGGAAAGGAACC 60.107 60.000 0.00 0.00 35.90 3.62
667 1001 4.591321 ACAATACCCATGAACATGACCT 57.409 40.909 15.21 1.46 41.20 3.85
676 1010 1.142667 TGAACATGACCTCTTGCCACA 59.857 47.619 0.00 0.00 0.00 4.17
680 1014 2.362077 ACATGACCTCTTGCCACAAAAC 59.638 45.455 0.00 0.00 0.00 2.43
919 2345 0.394565 AGCGCCTATCCTTCCATCAC 59.605 55.000 2.29 0.00 0.00 3.06
1131 2572 0.250770 AGGACTTCGAAAAGGGCCAC 60.251 55.000 6.18 0.00 36.78 5.01
1317 2758 1.153978 CGCCGCTGTAAGTCCGTTA 60.154 57.895 0.00 0.00 35.30 3.18
1529 2973 7.257722 TGATTCTTGTGAGTTTGGAAAAAGTC 58.742 34.615 0.12 0.12 33.75 3.01
1564 3008 6.346598 CCTGTTTGTGTACTGTGTTTCTATCG 60.347 42.308 0.00 0.00 0.00 2.92
1603 3053 8.700051 TGAAGAAGAAGAAGAAGAAGAAGAAGA 58.300 33.333 0.00 0.00 0.00 2.87
1604 3054 9.541143 GAAGAAGAAGAAGAAGAAGAAGAAGAA 57.459 33.333 0.00 0.00 0.00 2.52
1605 3055 9.546428 AAGAAGAAGAAGAAGAAGAAGAAGAAG 57.454 33.333 0.00 0.00 0.00 2.85
1606 3056 8.923270 AGAAGAAGAAGAAGAAGAAGAAGAAGA 58.077 33.333 0.00 0.00 0.00 2.87
1607 3057 9.541143 GAAGAAGAAGAAGAAGAAGAAGAAGAA 57.459 33.333 0.00 0.00 0.00 2.52
1608 3058 9.546428 AAGAAGAAGAAGAAGAAGAAGAAGAAG 57.454 33.333 0.00 0.00 0.00 2.85
1609 3059 8.923270 AGAAGAAGAAGAAGAAGAAGAAGAAGA 58.077 33.333 0.00 0.00 0.00 2.87
1610 3060 9.541143 GAAGAAGAAGAAGAAGAAGAAGAAGAA 57.459 33.333 0.00 0.00 0.00 2.52
1611 3061 9.546428 AAGAAGAAGAAGAAGAAGAAGAAGAAG 57.454 33.333 0.00 0.00 0.00 2.85
1612 3062 8.923270 AGAAGAAGAAGAAGAAGAAGAAGAAGA 58.077 33.333 0.00 0.00 0.00 2.87
1613 3063 9.541143 GAAGAAGAAGAAGAAGAAGAAGAAGAA 57.459 33.333 0.00 0.00 0.00 2.52
1614 3064 9.546428 AAGAAGAAGAAGAAGAAGAAGAAGAAG 57.454 33.333 0.00 0.00 0.00 2.85
1734 3185 4.775253 GGACCAACCAATTCCCAAGAAATA 59.225 41.667 0.00 0.00 38.79 1.40
1735 3186 5.247337 GGACCAACCAATTCCCAAGAAATAA 59.753 40.000 0.00 0.00 38.79 1.40
1736 3187 6.239743 GGACCAACCAATTCCCAAGAAATAAA 60.240 38.462 0.00 0.00 38.79 1.40
1737 3188 7.142995 ACCAACCAATTCCCAAGAAATAAAA 57.857 32.000 0.00 0.00 35.09 1.52
1738 3189 7.578203 ACCAACCAATTCCCAAGAAATAAAAA 58.422 30.769 0.00 0.00 35.09 1.94
1739 3190 8.224025 ACCAACCAATTCCCAAGAAATAAAAAT 58.776 29.630 0.00 0.00 35.09 1.82
1740 3191 8.513774 CCAACCAATTCCCAAGAAATAAAAATG 58.486 33.333 0.00 0.00 35.09 2.32
1741 3192 9.065798 CAACCAATTCCCAAGAAATAAAAATGT 57.934 29.630 0.00 0.00 35.09 2.71
1742 3193 9.639563 AACCAATTCCCAAGAAATAAAAATGTT 57.360 25.926 0.00 0.00 35.09 2.71
1743 3194 9.639563 ACCAATTCCCAAGAAATAAAAATGTTT 57.360 25.926 0.00 0.00 35.09 2.83
1744 3195 9.896263 CCAATTCCCAAGAAATAAAAATGTTTG 57.104 29.630 0.00 0.00 35.09 2.93
1748 3199 8.669946 TCCCAAGAAATAAAAATGTTTGTTCC 57.330 30.769 0.00 0.00 28.82 3.62
1749 3200 7.717436 TCCCAAGAAATAAAAATGTTTGTTCCC 59.283 33.333 0.00 0.00 28.82 3.97
1750 3201 7.040755 CCCAAGAAATAAAAATGTTTGTTCCCC 60.041 37.037 0.00 0.00 28.82 4.81
1751 3202 7.307692 CCAAGAAATAAAAATGTTTGTTCCCCG 60.308 37.037 0.00 0.00 28.82 5.73
1752 3203 5.699001 AGAAATAAAAATGTTTGTTCCCCGC 59.301 36.000 0.00 0.00 28.82 6.13
1753 3204 2.990066 AAAAATGTTTGTTCCCCGCA 57.010 40.000 0.00 0.00 0.00 5.69
1754 3205 2.990066 AAAATGTTTGTTCCCCGCAA 57.010 40.000 0.00 0.00 0.00 4.85
1755 3206 2.990066 AAATGTTTGTTCCCCGCAAA 57.010 40.000 0.00 0.00 33.96 3.68
1756 3207 2.990066 AATGTTTGTTCCCCGCAAAA 57.010 40.000 0.00 0.00 37.54 2.44
1757 3208 2.990066 ATGTTTGTTCCCCGCAAAAA 57.010 40.000 0.00 0.00 37.54 1.94
1792 3243 3.988517 GTGTACAGCTGAGTACCTGTTTC 59.011 47.826 23.35 0.00 42.84 2.78
1795 3246 2.700897 ACAGCTGAGTACCTGTTTCACT 59.299 45.455 23.35 0.00 39.11 3.41
1801 3252 4.116961 TGAGTACCTGTTTCACTGTTTCG 58.883 43.478 0.00 0.00 0.00 3.46
1806 3257 0.934496 TGTTTCACTGTTTCGCCGAG 59.066 50.000 0.00 0.00 0.00 4.63
1813 3264 0.109272 CTGTTTCGCCGAGTCAGCTA 60.109 55.000 7.45 0.00 0.00 3.32
1987 3439 6.473397 AAATCACTTTCTCATCTCGACAAC 57.527 37.500 0.00 0.00 0.00 3.32
2018 3470 6.970484 ACACGCTAAAAACATGATTCTTCTT 58.030 32.000 0.00 0.00 0.00 2.52
2042 3494 9.249457 CTTATTCAGATCTAAAATGCAGACGTA 57.751 33.333 11.11 0.00 0.00 3.57
2166 3618 1.471287 CAAGTGACCATGTGCCATCAG 59.529 52.381 0.00 0.00 0.00 2.90
2172 3624 3.008923 TGACCATGTGCCATCAGAGTTAA 59.991 43.478 0.00 0.00 0.00 2.01
2176 3628 6.186957 ACCATGTGCCATCAGAGTTAATTAA 58.813 36.000 0.00 0.00 0.00 1.40
2182 3634 9.109393 TGTGCCATCAGAGTTAATTAATTACTC 57.891 33.333 19.51 19.51 0.00 2.59
2203 3655 3.455543 TCCATCCATCACACAATAGAGCA 59.544 43.478 0.00 0.00 0.00 4.26
2225 3677 3.320826 ACATTGTTTTCCTAGGGTGCAAC 59.679 43.478 9.46 7.53 0.00 4.17
2257 3709 3.586039 GACACATCAAATGTCCGCG 57.414 52.632 0.00 0.00 42.70 6.46
2347 3799 3.411454 TGTCCAATGGAGAGAGGAGAT 57.589 47.619 0.27 0.00 29.39 2.75
2358 3810 3.655777 GAGAGAGGAGATAGAAGGGAGGA 59.344 52.174 0.00 0.00 0.00 3.71
2383 3835 1.828595 GAAAAGGTGGGTTTGTGGTGT 59.171 47.619 0.00 0.00 0.00 4.16
2385 3837 0.686112 AAGGTGGGTTTGTGGTGTGG 60.686 55.000 0.00 0.00 0.00 4.17
2400 3852 1.150536 GTGGTCCAAGGCTTGTCCA 59.849 57.895 26.41 26.41 37.29 4.02
2410 3862 4.130118 CAAGGCTTGTCCATAGTATGTCC 58.870 47.826 19.07 0.08 37.29 4.02
2417 3869 5.130705 TGTCCATAGTATGTCCAGACTCT 57.869 43.478 9.28 0.00 34.36 3.24
2421 3873 5.132816 TCCATAGTATGTCCAGACTCTCTCA 59.867 44.000 9.28 0.00 34.36 3.27
2431 3883 3.056891 CCAGACTCTCTCAGACCACTTTC 60.057 52.174 0.00 0.00 0.00 2.62
2439 3891 3.383505 TCTCAGACCACTTTCTCGTTTGA 59.616 43.478 0.00 0.00 0.00 2.69
2452 3904 6.978343 TTCTCGTTTGATACCTATTGTTGG 57.022 37.500 0.00 0.00 0.00 3.77
2464 3916 5.393866 ACCTATTGTTGGATTCTGGTTTGT 58.606 37.500 0.00 0.00 0.00 2.83
2467 3919 2.593026 TGTTGGATTCTGGTTTGTCCC 58.407 47.619 0.00 0.00 34.77 4.46
2471 3923 2.224769 TGGATTCTGGTTTGTCCCTGTC 60.225 50.000 0.00 0.00 34.77 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.867305 TTCAAACACATGGACACTTTTAGTA 57.133 32.000 0.00 0.00 0.00 1.82
1 2 6.767524 TTCAAACACATGGACACTTTTAGT 57.232 33.333 0.00 0.00 0.00 2.24
2 3 8.472683 TTTTTCAAACACATGGACACTTTTAG 57.527 30.769 0.00 0.00 0.00 1.85
29 30 7.442062 GGACAACATTTCTCAAACCATGATTTT 59.558 33.333 0.00 0.00 37.44 1.82
30 31 6.930722 GGACAACATTTCTCAAACCATGATTT 59.069 34.615 0.00 0.00 37.44 2.17
31 32 6.458210 GGACAACATTTCTCAAACCATGATT 58.542 36.000 0.00 0.00 37.44 2.57
34 35 4.023279 TCGGACAACATTTCTCAAACCATG 60.023 41.667 0.00 0.00 0.00 3.66
36 37 3.546724 TCGGACAACATTTCTCAAACCA 58.453 40.909 0.00 0.00 0.00 3.67
37 38 4.561735 TTCGGACAACATTTCTCAAACC 57.438 40.909 0.00 0.00 0.00 3.27
38 39 6.251376 GCATATTCGGACAACATTTCTCAAAC 59.749 38.462 0.00 0.00 0.00 2.93
42 43 5.484173 TGCATATTCGGACAACATTTCTC 57.516 39.130 0.00 0.00 0.00 2.87
103 104 8.964420 AGTATAATACACACACAAAATGCAAC 57.036 30.769 0.00 0.00 0.00 4.17
205 210 5.559148 TTGGTTGCCAACTTTATTTCCAT 57.441 34.783 7.62 0.00 38.75 3.41
207 212 4.213270 GCTTTGGTTGCCAACTTTATTTCC 59.787 41.667 7.62 0.00 43.82 3.13
260 265 3.123804 CCTTGCACAGACGGTACATATC 58.876 50.000 0.00 0.00 0.00 1.63
272 288 0.675083 TTTCACCATGCCTTGCACAG 59.325 50.000 0.00 0.00 43.04 3.66
293 319 7.019558 TCCCCTTATCCTATTCATGGCTATTTT 59.980 37.037 0.00 0.00 0.00 1.82
298 324 3.589288 GTCCCCTTATCCTATTCATGGCT 59.411 47.826 0.00 0.00 0.00 4.75
401 442 1.394227 TCAACAACGACACAACGGTTC 59.606 47.619 0.00 0.00 37.61 3.62
405 446 3.311788 TTGATCAACAACGACACAACG 57.688 42.857 3.38 0.00 39.31 4.10
628 961 9.216117 GGGTATTGTTGATACGAAATTATAGCT 57.784 33.333 0.00 0.00 41.31 3.32
635 969 7.338196 TGTTCATGGGTATTGTTGATACGAAAT 59.662 33.333 0.00 0.00 41.31 2.17
667 1001 5.422214 TTTTTAAGGGTTTTGTGGCAAGA 57.578 34.783 0.00 0.00 0.00 3.02
796 2222 2.425668 TCATGATCGTCTAAAGTCGCCA 59.574 45.455 0.00 0.00 0.00 5.69
919 2345 1.379044 GGCTGTGGAGTGGATTGGG 60.379 63.158 0.00 0.00 0.00 4.12
1146 2587 1.823610 GAGAGGTAGTAGGGCACGTTT 59.176 52.381 0.00 0.00 0.00 3.60
1298 2739 2.546645 TAACGGACTTACAGCGGCGG 62.547 60.000 9.78 0.00 0.00 6.13
1342 2784 8.324191 TCAAAGATGGTGATCTTACTAGGAAT 57.676 34.615 0.00 0.00 46.45 3.01
1346 2788 9.258826 CTCAATCAAAGATGGTGATCTTACTAG 57.741 37.037 0.00 0.00 46.45 2.57
1529 2973 2.557317 ACACAAACAGGTCACTAACGG 58.443 47.619 0.00 0.00 0.00 4.44
1603 3053 5.041191 TGAAGGACTTGCTTCTTCTTCTT 57.959 39.130 11.27 0.00 38.10 2.52
1604 3054 4.640364 CTGAAGGACTTGCTTCTTCTTCT 58.360 43.478 11.27 0.00 38.10 2.85
1605 3055 3.188254 GCTGAAGGACTTGCTTCTTCTTC 59.812 47.826 11.27 0.00 38.10 2.87
1606 3056 3.145286 GCTGAAGGACTTGCTTCTTCTT 58.855 45.455 11.27 0.00 38.10 2.52
1607 3057 2.371510 AGCTGAAGGACTTGCTTCTTCT 59.628 45.455 11.27 5.87 38.10 2.85
1608 3058 2.483491 CAGCTGAAGGACTTGCTTCTTC 59.517 50.000 8.42 3.96 37.85 2.87
1609 3059 2.105477 TCAGCTGAAGGACTTGCTTCTT 59.895 45.455 15.67 0.00 33.03 2.52
1610 3060 1.696336 TCAGCTGAAGGACTTGCTTCT 59.304 47.619 15.67 0.00 33.03 2.85
1611 3061 2.075338 CTCAGCTGAAGGACTTGCTTC 58.925 52.381 18.85 3.66 33.03 3.86
1612 3062 1.271271 CCTCAGCTGAAGGACTTGCTT 60.271 52.381 18.85 0.00 33.03 3.91
1613 3063 0.324285 CCTCAGCTGAAGGACTTGCT 59.676 55.000 18.85 0.00 36.04 3.91
1614 3064 1.304509 GCCTCAGCTGAAGGACTTGC 61.305 60.000 26.77 14.23 35.50 4.01
1734 3185 2.990066 TGCGGGGAACAAACATTTTT 57.010 40.000 0.00 0.00 0.00 1.94
1735 3186 2.990066 TTGCGGGGAACAAACATTTT 57.010 40.000 0.00 0.00 0.00 1.82
1736 3187 2.990066 TTTGCGGGGAACAAACATTT 57.010 40.000 0.00 0.00 32.27 2.32
1737 3188 2.990066 TTTTGCGGGGAACAAACATT 57.010 40.000 0.00 0.00 36.77 2.71
1738 3189 2.990066 TTTTTGCGGGGAACAAACAT 57.010 40.000 0.00 0.00 36.77 2.71
1792 3243 1.891060 GCTGACTCGGCGAAACAGTG 61.891 60.000 29.33 14.89 0.00 3.66
1795 3246 0.315886 TTAGCTGACTCGGCGAAACA 59.684 50.000 12.13 12.88 41.21 2.83
1801 3252 5.753921 ACAAGTATAATTTAGCTGACTCGGC 59.246 40.000 1.09 1.09 35.73 5.54
1865 3317 7.147312 CCTCAAATTCTGTAGTGCAAAAATGA 58.853 34.615 0.00 0.00 0.00 2.57
1987 3439 7.867445 ATCATGTTTTTAGCGTGTTTTTAGG 57.133 32.000 0.00 0.00 0.00 2.69
2018 3470 8.194769 TGTACGTCTGCATTTTAGATCTGAATA 58.805 33.333 5.18 0.00 0.00 1.75
2030 3482 3.985008 TGTGTACTGTACGTCTGCATTT 58.015 40.909 12.87 0.00 0.00 2.32
2042 3494 7.993101 AGTTGACGTATGTATATGTGTACTGT 58.007 34.615 1.67 0.00 32.91 3.55
2176 3628 7.379059 TCTATTGTGTGATGGATGGAGTAAT 57.621 36.000 0.00 0.00 0.00 1.89
2182 3634 3.562973 GTGCTCTATTGTGTGATGGATGG 59.437 47.826 0.00 0.00 0.00 3.51
2203 3655 3.237268 TGCACCCTAGGAAAACAATGT 57.763 42.857 11.48 0.00 0.00 2.71
2347 3799 4.668335 ACCTTTTCCTTTTCCTCCCTTCTA 59.332 41.667 0.00 0.00 0.00 2.10
2358 3810 3.054728 CCACAAACCCACCTTTTCCTTTT 60.055 43.478 0.00 0.00 0.00 2.27
2383 3835 1.281867 CTATGGACAAGCCTTGGACCA 59.718 52.381 21.46 21.46 42.19 4.02
2385 3837 2.789409 ACTATGGACAAGCCTTGGAC 57.211 50.000 9.64 1.58 37.63 4.02
2400 3852 6.296026 GTCTGAGAGAGTCTGGACATACTAT 58.704 44.000 0.00 0.00 32.52 2.12
2410 3862 3.826157 AGAAAGTGGTCTGAGAGAGTCTG 59.174 47.826 0.00 0.00 0.00 3.51
2417 3869 3.383505 TCAAACGAGAAAGTGGTCTGAGA 59.616 43.478 0.00 0.00 0.00 3.27
2421 3873 4.283722 AGGTATCAAACGAGAAAGTGGTCT 59.716 41.667 0.00 0.00 0.00 3.85
2431 3883 7.495934 AGAATCCAACAATAGGTATCAAACGAG 59.504 37.037 0.00 0.00 0.00 4.18
2439 3891 7.182060 ACAAACCAGAATCCAACAATAGGTAT 58.818 34.615 0.00 0.00 0.00 2.73
2452 3904 2.224769 TGGACAGGGACAAACCAGAATC 60.225 50.000 0.00 0.00 41.20 2.52
2464 3916 2.106857 ACCAAACGTTTATGGACAGGGA 59.893 45.455 22.75 0.00 39.12 4.20
2467 3919 4.083696 GGTACACCAAACGTTTATGGACAG 60.084 45.833 28.02 18.45 39.12 3.51
2471 3923 4.066490 TGAGGTACACCAAACGTTTATGG 58.934 43.478 21.82 19.22 42.60 2.74


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.