Multiple sequence alignment - TraesCS6D01G008000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G008000 chr6D 100.000 6430 0 0 1 6430 3271765 3278194 0.000000e+00 11875.0
1 TraesCS6D01G008000 chr6D 90.558 699 50 9 5743 6430 464410315 464409622 0.000000e+00 911.0
2 TraesCS6D01G008000 chr6D 90.521 633 34 10 5529 6138 175914758 175915387 0.000000e+00 813.0
3 TraesCS6D01G008000 chr6D 84.626 748 88 17 4043 4779 79801761 79802492 0.000000e+00 719.0
4 TraesCS6D01G008000 chr6D 87.943 282 25 3 5352 5630 228916713 228916438 2.240000e-84 324.0
5 TraesCS6D01G008000 chr6D 88.129 278 24 3 5352 5628 28400697 28400966 8.040000e-84 322.0
6 TraesCS6D01G008000 chr6D 87.589 282 25 4 5352 5630 228908905 228908631 1.040000e-82 318.0
7 TraesCS6D01G008000 chr6D 96.552 87 3 0 2586 2672 3274436 3274350 1.870000e-30 145.0
8 TraesCS6D01G008000 chr6D 90.654 107 9 1 2565 2671 361523760 361523865 2.420000e-29 141.0
9 TraesCS6D01G008000 chr6D 92.784 97 5 2 2587 2682 427966197 427966102 8.690000e-29 139.0
10 TraesCS6D01G008000 chr6D 89.815 108 10 1 1 107 445702809 445702916 3.130000e-28 137.0
11 TraesCS6D01G008000 chr6D 82.099 162 20 6 136 296 311542481 311542634 5.230000e-26 130.0
12 TraesCS6D01G008000 chr6D 80.588 170 28 2 130 298 375690142 375689977 6.770000e-25 126.0
13 TraesCS6D01G008000 chr6D 77.949 195 29 8 107 299 764137 764319 6.820000e-20 110.0
14 TraesCS6D01G008000 chr6D 81.720 93 16 1 13 105 418309057 418308966 6.910000e-10 76.8
15 TraesCS6D01G008000 chr6B 94.637 2256 95 12 2670 4922 6538787 6541019 0.000000e+00 3472.0
16 TraesCS6D01G008000 chr6B 85.455 2035 130 60 656 2585 6536812 6538785 0.000000e+00 1965.0
17 TraesCS6D01G008000 chr6B 85.896 787 78 17 5661 6430 648597459 648596689 0.000000e+00 808.0
18 TraesCS6D01G008000 chr6B 94.253 435 17 3 4920 5351 6541070 6541499 0.000000e+00 658.0
19 TraesCS6D01G008000 chr6A 91.737 1658 111 13 2788 4441 2063805 2065440 0.000000e+00 2279.0
20 TraesCS6D01G008000 chr6A 85.447 694 84 11 1786 2469 2062828 2063514 0.000000e+00 706.0
21 TraesCS6D01G008000 chr6A 92.531 482 32 4 4441 4920 2065487 2065966 0.000000e+00 688.0
22 TraesCS6D01G008000 chr6A 95.139 432 20 1 4920 5351 2066019 2066449 0.000000e+00 680.0
23 TraesCS6D01G008000 chr6A 88.915 424 29 11 1369 1789 2062392 2062800 2.070000e-139 507.0
24 TraesCS6D01G008000 chr6A 91.789 341 14 2 874 1200 2061849 2062189 4.540000e-126 462.0
25 TraesCS6D01G008000 chr6A 84.615 208 8 5 652 837 2061646 2061851 1.100000e-42 185.0
26 TraesCS6D01G008000 chr6A 94.068 118 7 0 2468 2585 2063601 2063718 5.120000e-41 180.0
27 TraesCS6D01G008000 chr6A 96.629 89 2 1 2587 2675 27342979 27342892 5.200000e-31 147.0
28 TraesCS6D01G008000 chr6A 96.471 85 3 0 2587 2671 101438278 101438362 2.420000e-29 141.0
29 TraesCS6D01G008000 chr4D 88.245 1778 169 22 2670 4441 214747758 214749501 0.000000e+00 2089.0
30 TraesCS6D01G008000 chr4D 87.355 949 94 15 1512 2450 214746224 214747156 0.000000e+00 1064.0
31 TraesCS6D01G008000 chr4D 93.228 635 29 8 5806 6430 384853361 384853991 0.000000e+00 922.0
32 TraesCS6D01G008000 chr4D 84.626 748 88 17 4043 4779 194331988 194332719 0.000000e+00 719.0
33 TraesCS6D01G008000 chr4D 87.521 601 47 14 5428 6020 147257863 147257283 0.000000e+00 669.0
34 TraesCS6D01G008000 chr4D 90.000 520 44 3 5916 6430 28962217 28961701 0.000000e+00 665.0
35 TraesCS6D01G008000 chr4D 88.669 353 28 6 4520 4869 214749647 214749990 2.770000e-113 420.0
36 TraesCS6D01G008000 chr4D 91.418 268 13 7 5341 5605 233840151 233840411 6.130000e-95 359.0
37 TraesCS6D01G008000 chr4D 88.153 287 26 5 5352 5632 13758960 13758676 1.030000e-87 335.0
38 TraesCS6D01G008000 chr4D 89.804 255 25 1 5097 5351 214752145 214752398 6.220000e-85 326.0
39 TraesCS6D01G008000 chr4D 91.813 171 14 0 1032 1202 214745865 214746035 8.330000e-59 239.0
40 TraesCS6D01G008000 chr4D 91.667 108 8 1 1 107 134664716 134664823 1.440000e-31 148.0
41 TraesCS6D01G008000 chr4D 93.617 94 4 2 2586 2678 182071715 182071807 8.690000e-29 139.0
42 TraesCS6D01G008000 chr4D 87.963 108 12 1 1 107 77230945 77230838 6.770000e-25 126.0
43 TraesCS6D01G008000 chr4D 85.263 95 12 2 13 107 439160804 439160712 5.310000e-16 97.1
44 TraesCS6D01G008000 chr4B 87.919 1788 170 24 2674 4441 348946407 348948168 0.000000e+00 2063.0
45 TraesCS6D01G008000 chr4B 87.216 970 91 19 1504 2459 348945205 348946155 0.000000e+00 1074.0
46 TraesCS6D01G008000 chr4B 89.175 388 33 4 4520 4903 348948307 348948689 5.830000e-130 475.0
47 TraesCS6D01G008000 chr4B 90.361 249 23 1 5097 5345 348950047 348950294 6.220000e-85 326.0
48 TraesCS6D01G008000 chr4B 92.982 171 12 0 1032 1202 348944855 348945025 3.850000e-62 250.0
49 TraesCS6D01G008000 chr4B 84.422 199 23 4 106 298 578404007 578404203 8.510000e-44 189.0
50 TraesCS6D01G008000 chr4B 84.577 201 20 6 106 298 578476263 578476460 8.510000e-44 189.0
51 TraesCS6D01G008000 chr4B 84.146 164 22 4 136 296 658965712 658965874 8.630000e-34 156.0
52 TraesCS6D01G008000 chr4B 90.000 110 8 2 1 107 424278068 424277959 8.690000e-29 139.0
53 TraesCS6D01G008000 chr4B 89.091 110 9 3 1 109 64087448 64087555 4.040000e-27 134.0
54 TraesCS6D01G008000 chr4B 87.037 108 13 1 1 107 115076876 115076769 3.150000e-23 121.0
55 TraesCS6D01G008000 chr4B 87.379 103 11 2 10 110 553259369 553259267 4.070000e-22 117.0
56 TraesCS6D01G008000 chr4A 88.525 1220 111 14 2673 3869 384397086 384395873 0.000000e+00 1450.0
57 TraesCS6D01G008000 chr4A 86.556 967 101 15 1504 2459 384398288 384397340 0.000000e+00 1038.0
58 TraesCS6D01G008000 chr4A 89.073 604 52 6 3842 4441 384395868 384395275 0.000000e+00 737.0
59 TraesCS6D01G008000 chr4A 88.725 408 38 4 4524 4927 384395130 384394727 5.790000e-135 492.0
60 TraesCS6D01G008000 chr4A 89.370 254 26 1 5098 5351 384393315 384393063 1.040000e-82 318.0
61 TraesCS6D01G008000 chr4A 92.857 168 12 0 1035 1202 384398637 384398470 1.790000e-60 244.0
62 TraesCS6D01G008000 chr5D 89.968 947 43 16 5526 6430 57049417 57048481 0.000000e+00 1175.0
63 TraesCS6D01G008000 chr5D 89.373 941 51 24 5526 6430 129563031 129563958 0.000000e+00 1138.0
64 TraesCS6D01G008000 chr5D 89.944 885 38 18 5589 6430 545737448 545736572 0.000000e+00 1094.0
65 TraesCS6D01G008000 chr5D 83.824 748 92 18 4043 4779 442271668 442270939 0.000000e+00 684.0
66 TraesCS6D01G008000 chr5D 90.805 261 16 5 5353 5605 284394425 284394165 6.170000e-90 342.0
67 TraesCS6D01G008000 chr5D 87.719 285 25 6 5352 5628 523473445 523473163 2.240000e-84 324.0
68 TraesCS6D01G008000 chr5D 85.119 168 21 4 130 296 198819049 198818885 1.110000e-37 169.0
69 TraesCS6D01G008000 chr5D 82.524 206 23 9 106 300 440969144 440968941 1.110000e-37 169.0
70 TraesCS6D01G008000 chr5D 96.629 89 3 0 2587 2675 504792931 504793019 1.440000e-31 148.0
71 TraesCS6D01G008000 chr5D 90.991 111 7 3 1 109 525314882 525314991 5.200000e-31 147.0
72 TraesCS6D01G008000 chr7D 91.395 860 32 23 5598 6418 85794576 85795432 0.000000e+00 1140.0
73 TraesCS6D01G008000 chr7D 84.495 1148 92 26 5352 6430 585061903 585063033 0.000000e+00 1055.0
74 TraesCS6D01G008000 chr7D 91.743 763 26 24 5593 6324 143579467 143580223 0.000000e+00 1026.0
75 TraesCS6D01G008000 chr7D 84.626 748 88 17 4043 4779 67056490 67055759 0.000000e+00 719.0
76 TraesCS6D01G008000 chr7D 91.860 258 13 3 5352 5606 54986871 54986619 2.850000e-93 353.0
77 TraesCS6D01G008000 chr7D 91.255 263 15 4 5351 5605 52011006 52011268 1.030000e-92 351.0
78 TraesCS6D01G008000 chr7D 87.986 283 22 6 5352 5628 86414682 86414958 2.240000e-84 324.0
79 TraesCS6D01G008000 chr7D 98.837 86 1 0 2587 2672 540863750 540863665 3.100000e-33 154.0
80 TraesCS6D01G008000 chr7D 96.667 90 2 1 2587 2676 506141453 506141365 1.440000e-31 148.0
81 TraesCS6D01G008000 chr7D 90.741 108 9 1 1 107 65761289 65761182 6.720000e-30 143.0
82 TraesCS6D01G008000 chr7D 90.741 108 8 2 1 107 616425320 616425426 6.720000e-30 143.0
83 TraesCS6D01G008000 chr7D 89.908 109 9 2 1 107 232491664 232491772 8.690000e-29 139.0
84 TraesCS6D01G008000 chr7D 89.815 108 10 1 1 107 101034592 101034699 3.130000e-28 137.0
85 TraesCS6D01G008000 chr2D 90.503 874 45 19 5590 6430 400722671 400723539 0.000000e+00 1120.0
86 TraesCS6D01G008000 chr2D 89.773 704 56 12 5736 6430 51230041 51230737 0.000000e+00 887.0
87 TraesCS6D01G008000 chr2D 88.710 744 52 15 5696 6430 29036670 29035950 0.000000e+00 880.0
88 TraesCS6D01G008000 chr2D 92.926 311 14 4 5352 5659 430216773 430216468 4.570000e-121 446.0
89 TraesCS6D01G008000 chr2D 91.589 107 8 1 1 106 324286976 324286870 5.200000e-31 147.0
90 TraesCS6D01G008000 chr3D 90.584 839 36 18 5625 6430 38851320 38850492 0.000000e+00 1072.0
91 TraesCS6D01G008000 chr3D 84.780 749 85 19 4043 4779 347752057 347752788 0.000000e+00 725.0
92 TraesCS6D01G008000 chr3D 83.168 202 22 7 106 298 511735981 511736179 2.380000e-39 174.0
93 TraesCS6D01G008000 chr3D 95.556 90 3 1 2587 2676 509255197 509255109 6.720000e-30 143.0
94 TraesCS6D01G008000 chr3D 90.000 110 9 2 1 109 466745597 466745489 2.420000e-29 141.0
95 TraesCS6D01G008000 chr3D 87.963 108 12 1 1 107 524222112 524222005 6.770000e-25 126.0
96 TraesCS6D01G008000 chr1D 91.848 736 37 10 5714 6430 91440526 91441257 0.000000e+00 1005.0
97 TraesCS6D01G008000 chr1D 97.727 88 2 0 2584 2671 122836799 122836886 1.120000e-32 152.0
98 TraesCS6D01G008000 chr1D 83.951 162 22 3 137 296 140112501 140112660 1.120000e-32 152.0
99 TraesCS6D01G008000 chr1D 97.647 85 2 0 2587 2671 308266797 308266881 5.200000e-31 147.0
100 TraesCS6D01G008000 chr1D 81.865 193 17 7 106 296 403330899 403331075 5.200000e-31 147.0
101 TraesCS6D01G008000 chr1D 94.565 92 5 0 2587 2678 122836886 122836795 6.720000e-30 143.0
102 TraesCS6D01G008000 chr1D 81.111 180 24 9 106 283 28964464 28964635 1.120000e-27 135.0
103 TraesCS6D01G008000 chrUn 87.789 778 68 18 5661 6428 47487695 47486935 0.000000e+00 885.0
104 TraesCS6D01G008000 chrUn 84.422 199 23 4 106 298 310404655 310404851 8.510000e-44 189.0
105 TraesCS6D01G008000 chrUn 84.422 199 23 4 106 298 345774993 345774797 8.510000e-44 189.0
106 TraesCS6D01G008000 chrUn 82.297 209 22 10 103 305 33334766 33334965 3.990000e-37 167.0
107 TraesCS6D01G008000 chrUn 81.818 209 22 10 103 305 331160400 331160202 1.860000e-35 161.0
108 TraesCS6D01G008000 chrUn 98.824 85 1 0 2587 2671 62663486 62663402 1.120000e-32 152.0
109 TraesCS6D01G008000 chrUn 94.624 93 3 2 2587 2678 135090802 135090711 6.720000e-30 143.0
110 TraesCS6D01G008000 chrUn 94.624 93 3 2 2587 2678 152687658 152687567 6.720000e-30 143.0
111 TraesCS6D01G008000 chrUn 95.506 89 3 1 2587 2675 17148599 17148686 2.420000e-29 141.0
112 TraesCS6D01G008000 chrUn 96.471 85 3 0 2587 2671 23900853 23900937 2.420000e-29 141.0
113 TraesCS6D01G008000 chrUn 95.506 89 3 1 2587 2675 224653393 224653306 2.420000e-29 141.0
114 TraesCS6D01G008000 chrUn 95.402 87 4 0 2586 2672 52071240 52071154 8.690000e-29 139.0
115 TraesCS6D01G008000 chrUn 94.382 89 5 0 2583 2671 62690558 62690470 3.130000e-28 137.0
116 TraesCS6D01G008000 chrUn 95.349 86 4 0 2587 2672 62690470 62690555 3.130000e-28 137.0
117 TraesCS6D01G008000 chrUn 94.444 90 4 1 2583 2672 163394433 163394521 3.130000e-28 137.0
118 TraesCS6D01G008000 chrUn 94.444 90 4 1 2583 2672 325472445 325472533 3.130000e-28 137.0
119 TraesCS6D01G008000 chrUn 94.444 90 4 1 2583 2672 384522695 384522783 3.130000e-28 137.0
120 TraesCS6D01G008000 chrUn 91.753 97 8 0 2587 2683 92738992 92738896 1.120000e-27 135.0
121 TraesCS6D01G008000 chrUn 92.632 95 6 1 2587 2681 343556794 343556701 1.120000e-27 135.0
122 TraesCS6D01G008000 chrUn 92.632 95 6 1 2587 2681 376516868 376516775 1.120000e-27 135.0
123 TraesCS6D01G008000 chrUn 85.484 124 12 4 186 305 349620512 349620633 2.430000e-24 124.0
124 TraesCS6D01G008000 chrUn 86.364 110 11 3 1 109 384996598 384996492 4.070000e-22 117.0
125 TraesCS6D01G008000 chrUn 84.211 95 13 2 13 107 24513508 24513416 2.470000e-14 91.6
126 TraesCS6D01G008000 chrUn 83.158 95 14 2 13 107 408731315 408731407 1.150000e-12 86.1
127 TraesCS6D01G008000 chrUn 80.412 97 13 6 13 107 358062601 358062693 1.160000e-07 69.4
128 TraesCS6D01G008000 chrUn 80.412 97 13 6 13 107 427342462 427342554 1.160000e-07 69.4
129 TraesCS6D01G008000 chrUn 80.412 97 13 6 13 107 476208624 476208532 1.160000e-07 69.4
130 TraesCS6D01G008000 chr5A 90.263 647 48 13 5791 6430 215914575 215913937 0.000000e+00 832.0
131 TraesCS6D01G008000 chr5A 90.741 108 9 1 1 107 533569747 533569854 6.720000e-30 143.0
132 TraesCS6D01G008000 chr3B 83.333 684 87 17 4043 4715 106145827 106146494 1.980000e-169 606.0
133 TraesCS6D01G008000 chr3B 95.699 93 3 1 2586 2677 334313067 334313159 1.440000e-31 148.0
134 TraesCS6D01G008000 chr3B 93.814 97 5 1 2582 2678 804117573 804117478 1.870000e-30 145.0
135 TraesCS6D01G008000 chr2B 87.543 289 25 7 5349 5628 756443823 756444109 2.240000e-84 324.0
136 TraesCS6D01G008000 chr2B 94.737 95 1 3 2582 2676 782178843 782178753 1.870000e-30 145.0
137 TraesCS6D01G008000 chr2B 90.741 108 9 1 1 107 142920183 142920076 6.720000e-30 143.0
138 TraesCS6D01G008000 chr2B 90.826 109 7 3 1 107 643356034 643355927 6.720000e-30 143.0
139 TraesCS6D01G008000 chr5B 85.882 170 18 5 135 302 65968187 65968022 6.630000e-40 176.0
140 TraesCS6D01G008000 chr7B 83.673 196 21 6 106 299 651455036 651454850 2.380000e-39 174.0
141 TraesCS6D01G008000 chr7B 93.878 98 5 1 2582 2679 66196709 66196613 5.200000e-31 147.0
142 TraesCS6D01G008000 chr7B 94.681 94 3 1 2587 2680 263113386 263113295 1.870000e-30 145.0
143 TraesCS6D01G008000 chr2A 97.778 90 2 0 2587 2676 568412706 568412795 8.630000e-34 156.0
144 TraesCS6D01G008000 chr2A 97.727 88 2 0 2584 2671 10843212 10843299 1.120000e-32 152.0
145 TraesCS6D01G008000 chr1B 93.000 100 5 2 2581 2679 164770360 164770458 1.870000e-30 145.0
146 TraesCS6D01G008000 chr1B 95.604 91 2 2 2587 2677 411560374 411560286 1.870000e-30 145.0
147 TraesCS6D01G008000 chr7A 89.815 108 7 4 2590 2695 612025869 612025764 1.120000e-27 135.0
148 TraesCS6D01G008000 chr1A 88.889 108 6 5 2 106 529649490 529649386 1.880000e-25 128.0
149 TraesCS6D01G008000 chr1A 87.037 108 12 2 1 107 548235945 548235839 3.150000e-23 121.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G008000 chr6D 3271765 3278194 6429 False 11875.000000 11875 100.000000 1 6430 1 chr6D.!!$F2 6429
1 TraesCS6D01G008000 chr6D 464409622 464410315 693 True 911.000000 911 90.558000 5743 6430 1 chr6D.!!$R7 687
2 TraesCS6D01G008000 chr6D 175914758 175915387 629 False 813.000000 813 90.521000 5529 6138 1 chr6D.!!$F5 609
3 TraesCS6D01G008000 chr6D 79801761 79802492 731 False 719.000000 719 84.626000 4043 4779 1 chr6D.!!$F4 736
4 TraesCS6D01G008000 chr6B 6536812 6541499 4687 False 2031.666667 3472 91.448333 656 5351 3 chr6B.!!$F1 4695
5 TraesCS6D01G008000 chr6B 648596689 648597459 770 True 808.000000 808 85.896000 5661 6430 1 chr6B.!!$R1 769
6 TraesCS6D01G008000 chr6A 2061646 2066449 4803 False 710.875000 2279 90.530125 652 5351 8 chr6A.!!$F2 4699
7 TraesCS6D01G008000 chr4D 384853361 384853991 630 False 922.000000 922 93.228000 5806 6430 1 chr4D.!!$F5 624
8 TraesCS6D01G008000 chr4D 214745865 214752398 6533 False 827.600000 2089 89.177200 1032 5351 5 chr4D.!!$F6 4319
9 TraesCS6D01G008000 chr4D 194331988 194332719 731 False 719.000000 719 84.626000 4043 4779 1 chr4D.!!$F3 736
10 TraesCS6D01G008000 chr4D 147257283 147257863 580 True 669.000000 669 87.521000 5428 6020 1 chr4D.!!$R4 592
11 TraesCS6D01G008000 chr4D 28961701 28962217 516 True 665.000000 665 90.000000 5916 6430 1 chr4D.!!$R2 514
12 TraesCS6D01G008000 chr4B 348944855 348950294 5439 False 837.600000 2063 89.530600 1032 5345 5 chr4B.!!$F5 4313
13 TraesCS6D01G008000 chr4A 384393063 384398637 5574 True 713.166667 1450 89.184333 1035 5351 6 chr4A.!!$R1 4316
14 TraesCS6D01G008000 chr5D 57048481 57049417 936 True 1175.000000 1175 89.968000 5526 6430 1 chr5D.!!$R1 904
15 TraesCS6D01G008000 chr5D 129563031 129563958 927 False 1138.000000 1138 89.373000 5526 6430 1 chr5D.!!$F1 904
16 TraesCS6D01G008000 chr5D 545736572 545737448 876 True 1094.000000 1094 89.944000 5589 6430 1 chr5D.!!$R7 841
17 TraesCS6D01G008000 chr5D 442270939 442271668 729 True 684.000000 684 83.824000 4043 4779 1 chr5D.!!$R5 736
18 TraesCS6D01G008000 chr7D 85794576 85795432 856 False 1140.000000 1140 91.395000 5598 6418 1 chr7D.!!$F2 820
19 TraesCS6D01G008000 chr7D 585061903 585063033 1130 False 1055.000000 1055 84.495000 5352 6430 1 chr7D.!!$F7 1078
20 TraesCS6D01G008000 chr7D 143579467 143580223 756 False 1026.000000 1026 91.743000 5593 6324 1 chr7D.!!$F5 731
21 TraesCS6D01G008000 chr7D 67055759 67056490 731 True 719.000000 719 84.626000 4043 4779 1 chr7D.!!$R3 736
22 TraesCS6D01G008000 chr2D 400722671 400723539 868 False 1120.000000 1120 90.503000 5590 6430 1 chr2D.!!$F2 840
23 TraesCS6D01G008000 chr2D 51230041 51230737 696 False 887.000000 887 89.773000 5736 6430 1 chr2D.!!$F1 694
24 TraesCS6D01G008000 chr2D 29035950 29036670 720 True 880.000000 880 88.710000 5696 6430 1 chr2D.!!$R1 734
25 TraesCS6D01G008000 chr3D 38850492 38851320 828 True 1072.000000 1072 90.584000 5625 6430 1 chr3D.!!$R1 805
26 TraesCS6D01G008000 chr3D 347752057 347752788 731 False 725.000000 725 84.780000 4043 4779 1 chr3D.!!$F1 736
27 TraesCS6D01G008000 chr1D 91440526 91441257 731 False 1005.000000 1005 91.848000 5714 6430 1 chr1D.!!$F2 716
28 TraesCS6D01G008000 chrUn 47486935 47487695 760 True 885.000000 885 87.789000 5661 6428 1 chrUn.!!$R2 767
29 TraesCS6D01G008000 chr5A 215913937 215914575 638 True 832.000000 832 90.263000 5791 6430 1 chr5A.!!$R1 639
30 TraesCS6D01G008000 chr3B 106145827 106146494 667 False 606.000000 606 83.333000 4043 4715 1 chr3B.!!$F1 672

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
172 173 0.026544 GTCGAAAACACGTGCGGAAA 59.973 50.0 17.22 0.0 34.70 3.13 F
436 437 0.040942 TGGCCAGCCCACAATATGTT 59.959 50.0 0.00 0.0 39.18 2.71 F
650 651 0.111061 ATTGAGCTGCCTCCACACAA 59.889 50.0 0.00 0.0 37.29 3.33 F
2602 3320 0.338814 AGTTACTCCCTCCGTCCCAT 59.661 55.0 0.00 0.0 0.00 4.00 F
3812 4574 0.171231 GAAGAAATTGGCGGTGCTCC 59.829 55.0 0.00 0.0 0.00 4.70 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1759 1914 0.039618 AATGGCCTTGGTGTACCCAG 59.960 55.000 3.32 0.0 46.31 4.45 R
2239 2437 0.177373 GAACCATCCCACGGACTACC 59.823 60.000 0.00 0.0 32.98 3.18 R
2649 3367 1.344087 ACTCCCTCCGTCCCATAATGT 60.344 52.381 0.00 0.0 0.00 2.71 R
3934 4728 1.070134 AGTACTGCCTCGCAAGACAAA 59.930 47.619 0.00 0.0 45.01 2.83 R
5609 8869 0.037139 TTAGTAATGGCGCACCGTGT 60.037 50.000 10.83 0.0 39.70 4.49 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.951458 CGGGAGCACGGGTTTTTC 59.049 61.111 0.00 0.00 0.00 2.29
18 19 2.622962 CGGGAGCACGGGTTTTTCC 61.623 63.158 0.00 0.00 0.00 3.13
36 37 4.533566 CTTTCCGAAAAGGCACGC 57.466 55.556 0.00 0.00 38.59 5.34
37 38 1.081442 CTTTCCGAAAAGGCACGCC 60.081 57.895 0.00 0.00 38.59 5.68
48 49 2.501128 GCACGCCTATGCCTCTCA 59.499 61.111 0.00 0.00 39.86 3.27
49 50 1.884926 GCACGCCTATGCCTCTCAC 60.885 63.158 0.00 0.00 39.86 3.51
50 51 1.589993 CACGCCTATGCCTCTCACG 60.590 63.158 0.00 0.00 0.00 4.35
51 52 1.753078 ACGCCTATGCCTCTCACGA 60.753 57.895 0.00 0.00 0.00 4.35
52 53 1.320344 ACGCCTATGCCTCTCACGAA 61.320 55.000 0.00 0.00 0.00 3.85
53 54 0.179111 CGCCTATGCCTCTCACGAAA 60.179 55.000 0.00 0.00 0.00 3.46
54 55 1.539065 CGCCTATGCCTCTCACGAAAT 60.539 52.381 0.00 0.00 0.00 2.17
55 56 2.139118 GCCTATGCCTCTCACGAAATC 58.861 52.381 0.00 0.00 0.00 2.17
56 57 2.483714 GCCTATGCCTCTCACGAAATCA 60.484 50.000 0.00 0.00 0.00 2.57
57 58 3.126831 CCTATGCCTCTCACGAAATCAC 58.873 50.000 0.00 0.00 0.00 3.06
58 59 2.768253 ATGCCTCTCACGAAATCACA 57.232 45.000 0.00 0.00 0.00 3.58
59 60 2.084610 TGCCTCTCACGAAATCACAG 57.915 50.000 0.00 0.00 0.00 3.66
60 61 0.723981 GCCTCTCACGAAATCACAGC 59.276 55.000 0.00 0.00 0.00 4.40
61 62 1.363744 CCTCTCACGAAATCACAGCC 58.636 55.000 0.00 0.00 0.00 4.85
62 63 0.994995 CTCTCACGAAATCACAGCCG 59.005 55.000 0.00 0.00 0.00 5.52
63 64 0.317160 TCTCACGAAATCACAGCCGT 59.683 50.000 0.00 0.00 35.46 5.68
65 66 1.154413 CACGAAATCACAGCCGTGC 60.154 57.895 0.00 0.00 44.24 5.34
66 67 2.325082 ACGAAATCACAGCCGTGCC 61.325 57.895 0.00 0.00 43.28 5.01
67 68 2.034879 CGAAATCACAGCCGTGCCT 61.035 57.895 0.00 0.00 43.28 4.75
68 69 1.796796 GAAATCACAGCCGTGCCTC 59.203 57.895 0.00 0.00 43.28 4.70
69 70 0.674895 GAAATCACAGCCGTGCCTCT 60.675 55.000 0.00 0.00 43.28 3.69
70 71 0.674895 AAATCACAGCCGTGCCTCTC 60.675 55.000 0.00 0.00 43.28 3.20
71 72 2.842394 AATCACAGCCGTGCCTCTCG 62.842 60.000 0.00 0.00 43.28 4.04
89 90 3.916439 CGGAAGCAAAAACGTGCC 58.084 55.556 0.00 0.00 46.14 5.01
90 91 1.358759 CGGAAGCAAAAACGTGCCT 59.641 52.632 0.00 0.00 46.14 4.75
91 92 0.660300 CGGAAGCAAAAACGTGCCTC 60.660 55.000 0.00 0.00 46.14 4.70
92 93 0.668535 GGAAGCAAAAACGTGCCTCT 59.331 50.000 0.00 0.00 46.14 3.69
93 94 1.335051 GGAAGCAAAAACGTGCCTCTC 60.335 52.381 0.00 0.00 46.14 3.20
94 95 1.333619 GAAGCAAAAACGTGCCTCTCA 59.666 47.619 0.00 0.00 46.14 3.27
95 96 0.663153 AGCAAAAACGTGCCTCTCAC 59.337 50.000 0.00 0.00 46.14 3.51
96 97 0.380378 GCAAAAACGTGCCTCTCACA 59.620 50.000 0.00 0.00 45.92 3.58
97 98 1.597937 GCAAAAACGTGCCTCTCACAG 60.598 52.381 0.00 0.00 45.92 3.66
98 99 1.939934 CAAAAACGTGCCTCTCACAGA 59.060 47.619 0.00 0.00 45.92 3.41
99 100 2.325583 AAAACGTGCCTCTCACAGAA 57.674 45.000 0.00 0.00 45.92 3.02
100 101 1.871080 AAACGTGCCTCTCACAGAAG 58.129 50.000 0.00 0.00 45.92 2.85
101 102 0.034059 AACGTGCCTCTCACAGAAGG 59.966 55.000 0.00 0.00 45.92 3.46
102 103 0.827925 ACGTGCCTCTCACAGAAGGA 60.828 55.000 0.00 0.00 45.92 3.36
103 104 0.318441 CGTGCCTCTCACAGAAGGAA 59.682 55.000 0.00 0.00 45.92 3.36
104 105 1.270305 CGTGCCTCTCACAGAAGGAAA 60.270 52.381 0.00 0.00 45.92 3.13
105 106 2.806745 CGTGCCTCTCACAGAAGGAAAA 60.807 50.000 0.00 0.00 45.92 2.29
106 107 3.214328 GTGCCTCTCACAGAAGGAAAAA 58.786 45.455 0.00 0.00 44.98 1.94
107 108 3.251972 GTGCCTCTCACAGAAGGAAAAAG 59.748 47.826 0.00 0.00 44.98 2.27
108 109 3.136443 TGCCTCTCACAGAAGGAAAAAGA 59.864 43.478 0.00 0.00 0.00 2.52
109 110 3.500299 GCCTCTCACAGAAGGAAAAAGAC 59.500 47.826 0.00 0.00 0.00 3.01
110 111 4.068599 CCTCTCACAGAAGGAAAAAGACC 58.931 47.826 0.00 0.00 0.00 3.85
111 112 3.728845 TCTCACAGAAGGAAAAAGACCG 58.271 45.455 0.00 0.00 0.00 4.79
112 113 2.808543 CTCACAGAAGGAAAAAGACCGG 59.191 50.000 0.00 0.00 0.00 5.28
113 114 2.171870 TCACAGAAGGAAAAAGACCGGT 59.828 45.455 6.92 6.92 0.00 5.28
114 115 2.290641 CACAGAAGGAAAAAGACCGGTG 59.709 50.000 14.63 0.00 0.00 4.94
115 116 2.171870 ACAGAAGGAAAAAGACCGGTGA 59.828 45.455 14.63 0.00 0.00 4.02
116 117 3.211045 CAGAAGGAAAAAGACCGGTGAA 58.789 45.455 14.63 0.00 0.00 3.18
117 118 3.630312 CAGAAGGAAAAAGACCGGTGAAA 59.370 43.478 14.63 0.00 0.00 2.69
118 119 4.097286 CAGAAGGAAAAAGACCGGTGAAAA 59.903 41.667 14.63 0.00 0.00 2.29
119 120 4.097437 AGAAGGAAAAAGACCGGTGAAAAC 59.903 41.667 14.63 0.00 0.00 2.43
120 121 2.691526 AGGAAAAAGACCGGTGAAAACC 59.308 45.455 14.63 8.57 0.00 3.27
130 131 2.095384 GGTGAAAACCGAAACGTCAC 57.905 50.000 0.00 0.00 38.28 3.67
131 132 2.095384 GTGAAAACCGAAACGTCACC 57.905 50.000 0.00 0.00 33.95 4.02
132 133 1.015868 TGAAAACCGAAACGTCACCC 58.984 50.000 0.00 0.00 0.00 4.61
133 134 1.015868 GAAAACCGAAACGTCACCCA 58.984 50.000 0.00 0.00 0.00 4.51
134 135 1.003223 GAAAACCGAAACGTCACCCAG 60.003 52.381 0.00 0.00 0.00 4.45
135 136 0.178533 AAACCGAAACGTCACCCAGA 59.821 50.000 0.00 0.00 0.00 3.86
136 137 0.178533 AACCGAAACGTCACCCAGAA 59.821 50.000 0.00 0.00 0.00 3.02
137 138 0.178533 ACCGAAACGTCACCCAGAAA 59.821 50.000 0.00 0.00 0.00 2.52
138 139 1.301423 CCGAAACGTCACCCAGAAAA 58.699 50.000 0.00 0.00 0.00 2.29
139 140 1.671845 CCGAAACGTCACCCAGAAAAA 59.328 47.619 0.00 0.00 0.00 1.94
162 163 8.463456 AAAATCCGTTTAAAAAGTCGAAAACA 57.537 26.923 8.42 0.00 32.61 2.83
163 164 7.440541 AATCCGTTTAAAAAGTCGAAAACAC 57.559 32.000 8.42 0.00 32.61 3.32
164 165 5.020758 TCCGTTTAAAAAGTCGAAAACACG 58.979 37.500 8.42 0.00 32.61 4.49
165 166 4.787591 CCGTTTAAAAAGTCGAAAACACGT 59.212 37.500 8.42 0.00 32.61 4.49
166 167 5.274914 CCGTTTAAAAAGTCGAAAACACGTG 60.275 40.000 15.48 15.48 32.61 4.49
167 168 5.465966 GTTTAAAAAGTCGAAAACACGTGC 58.534 37.500 17.22 0.00 33.16 5.34
168 169 1.805286 AAAAGTCGAAAACACGTGCG 58.195 45.000 17.22 11.34 34.70 5.34
169 170 0.027063 AAAGTCGAAAACACGTGCGG 59.973 50.000 17.22 0.24 34.70 5.69
170 171 0.806884 AAGTCGAAAACACGTGCGGA 60.807 50.000 17.22 2.90 34.70 5.54
171 172 0.806884 AGTCGAAAACACGTGCGGAA 60.807 50.000 17.22 0.00 34.70 4.30
172 173 0.026544 GTCGAAAACACGTGCGGAAA 59.973 50.000 17.22 0.00 34.70 3.13
173 174 0.725686 TCGAAAACACGTGCGGAAAA 59.274 45.000 17.22 0.00 34.70 2.29
174 175 1.331138 TCGAAAACACGTGCGGAAAAT 59.669 42.857 17.22 0.00 34.70 1.82
175 176 2.543012 TCGAAAACACGTGCGGAAAATA 59.457 40.909 17.22 0.00 34.70 1.40
176 177 3.002042 TCGAAAACACGTGCGGAAAATAA 59.998 39.130 17.22 0.00 34.70 1.40
177 178 3.724751 CGAAAACACGTGCGGAAAATAAA 59.275 39.130 17.22 0.00 0.00 1.40
178 179 4.204573 CGAAAACACGTGCGGAAAATAAAA 59.795 37.500 17.22 0.00 0.00 1.52
179 180 5.275788 CGAAAACACGTGCGGAAAATAAAAA 60.276 36.000 17.22 0.00 0.00 1.94
233 234 2.872557 CGTGGTCGACGGCTAAGA 59.127 61.111 9.92 0.00 44.85 2.10
234 235 1.226323 CGTGGTCGACGGCTAAGAG 60.226 63.158 9.92 0.00 44.85 2.85
235 236 1.516603 GTGGTCGACGGCTAAGAGC 60.517 63.158 9.92 0.00 41.46 4.09
236 237 2.278013 GGTCGACGGCTAAGAGCG 60.278 66.667 9.92 0.00 43.62 5.03
237 238 2.950194 GTCGACGGCTAAGAGCGC 60.950 66.667 0.00 0.00 43.62 5.92
238 239 4.531912 TCGACGGCTAAGAGCGCG 62.532 66.667 0.00 0.00 43.62 6.86
243 244 3.567797 GGCTAAGAGCGCGCCAAG 61.568 66.667 30.33 20.26 43.62 3.61
244 245 2.815647 GCTAAGAGCGCGCCAAGT 60.816 61.111 30.33 9.44 0.00 3.16
245 246 1.518572 GCTAAGAGCGCGCCAAGTA 60.519 57.895 30.33 14.06 0.00 2.24
246 247 1.082117 GCTAAGAGCGCGCCAAGTAA 61.082 55.000 30.33 7.93 0.00 2.24
247 248 0.645868 CTAAGAGCGCGCCAAGTAAC 59.354 55.000 30.33 10.54 0.00 2.50
248 249 1.074319 TAAGAGCGCGCCAAGTAACG 61.074 55.000 30.33 0.00 0.00 3.18
257 258 3.944422 CGCCAAGTAACGCTTATCATT 57.056 42.857 0.00 0.00 35.27 2.57
258 259 3.607439 CGCCAAGTAACGCTTATCATTG 58.393 45.455 0.00 0.00 35.27 2.82
259 260 3.063452 CGCCAAGTAACGCTTATCATTGT 59.937 43.478 0.00 0.00 35.27 2.71
260 261 4.342772 GCCAAGTAACGCTTATCATTGTG 58.657 43.478 0.00 0.00 35.27 3.33
261 262 4.094294 GCCAAGTAACGCTTATCATTGTGA 59.906 41.667 0.00 0.00 35.27 3.58
262 263 5.727791 GCCAAGTAACGCTTATCATTGTGAG 60.728 44.000 0.00 0.00 35.27 3.51
263 264 5.220662 CCAAGTAACGCTTATCATTGTGAGG 60.221 44.000 0.00 0.00 35.27 3.86
264 265 3.871594 AGTAACGCTTATCATTGTGAGGC 59.128 43.478 0.00 0.00 0.00 4.70
265 266 2.698855 ACGCTTATCATTGTGAGGCT 57.301 45.000 0.00 0.00 0.00 4.58
266 267 2.991250 ACGCTTATCATTGTGAGGCTT 58.009 42.857 0.00 0.00 0.00 4.35
267 268 3.347216 ACGCTTATCATTGTGAGGCTTT 58.653 40.909 0.00 0.00 0.00 3.51
268 269 3.375299 ACGCTTATCATTGTGAGGCTTTC 59.625 43.478 0.00 0.00 0.00 2.62
269 270 3.374988 CGCTTATCATTGTGAGGCTTTCA 59.625 43.478 0.00 0.00 0.00 2.69
270 271 4.142622 CGCTTATCATTGTGAGGCTTTCAA 60.143 41.667 7.53 7.53 37.61 2.69
271 272 5.619757 CGCTTATCATTGTGAGGCTTTCAAA 60.620 40.000 8.80 0.00 37.61 2.69
272 273 5.803967 GCTTATCATTGTGAGGCTTTCAAAG 59.196 40.000 8.80 0.00 37.61 2.77
273 274 6.349611 GCTTATCATTGTGAGGCTTTCAAAGA 60.350 38.462 0.00 10.92 37.61 2.52
274 275 7.523293 TTATCATTGTGAGGCTTTCAAAGAA 57.477 32.000 0.00 0.00 37.61 2.52
275 276 5.443185 TCATTGTGAGGCTTTCAAAGAAG 57.557 39.130 0.00 0.00 37.61 2.85
281 282 2.993130 GCTTTCAAAGAAGCGCTCG 58.007 52.632 12.06 0.00 42.17 5.03
282 283 0.235926 GCTTTCAAAGAAGCGCTCGT 59.764 50.000 12.06 0.00 42.17 4.18
283 284 1.723067 GCTTTCAAAGAAGCGCTCGTC 60.723 52.381 12.06 5.48 42.17 4.20
284 285 1.526887 CTTTCAAAGAAGCGCTCGTCA 59.473 47.619 12.06 0.00 0.00 4.35
285 286 1.577468 TTCAAAGAAGCGCTCGTCAA 58.423 45.000 12.06 0.00 0.00 3.18
286 287 1.795768 TCAAAGAAGCGCTCGTCAAT 58.204 45.000 12.06 0.00 0.00 2.57
287 288 2.143122 TCAAAGAAGCGCTCGTCAATT 58.857 42.857 12.06 2.22 0.00 2.32
288 289 3.322369 TCAAAGAAGCGCTCGTCAATTA 58.678 40.909 12.06 0.00 0.00 1.40
289 290 3.367932 TCAAAGAAGCGCTCGTCAATTAG 59.632 43.478 12.06 1.57 0.00 1.73
290 291 2.656560 AGAAGCGCTCGTCAATTAGT 57.343 45.000 12.06 0.00 0.00 2.24
291 292 2.960819 AGAAGCGCTCGTCAATTAGTT 58.039 42.857 12.06 0.00 0.00 2.24
292 293 2.668457 AGAAGCGCTCGTCAATTAGTTG 59.332 45.455 12.06 0.00 36.65 3.16
293 294 0.721718 AGCGCTCGTCAATTAGTTGC 59.278 50.000 2.64 0.00 35.26 4.17
294 295 0.721718 GCGCTCGTCAATTAGTTGCT 59.278 50.000 0.00 0.00 35.26 3.91
295 296 1.267087 GCGCTCGTCAATTAGTTGCTC 60.267 52.381 0.00 0.00 35.26 4.26
296 297 1.324736 CGCTCGTCAATTAGTTGCTCC 59.675 52.381 0.00 0.00 35.26 4.70
297 298 1.666189 GCTCGTCAATTAGTTGCTCCC 59.334 52.381 0.00 0.00 35.26 4.30
298 299 2.935238 GCTCGTCAATTAGTTGCTCCCA 60.935 50.000 0.00 0.00 35.26 4.37
299 300 2.673368 CTCGTCAATTAGTTGCTCCCAC 59.327 50.000 0.00 0.00 35.26 4.61
300 301 2.037902 TCGTCAATTAGTTGCTCCCACA 59.962 45.455 0.00 0.00 35.26 4.17
301 302 2.159627 CGTCAATTAGTTGCTCCCACAC 59.840 50.000 0.00 0.00 35.26 3.82
302 303 3.146066 GTCAATTAGTTGCTCCCACACA 58.854 45.455 0.00 0.00 35.26 3.72
303 304 3.568007 GTCAATTAGTTGCTCCCACACAA 59.432 43.478 0.00 0.00 35.26 3.33
304 305 4.218417 GTCAATTAGTTGCTCCCACACAAT 59.782 41.667 0.00 0.00 35.26 2.71
305 306 4.832266 TCAATTAGTTGCTCCCACACAATT 59.168 37.500 0.00 0.00 35.26 2.32
306 307 5.304101 TCAATTAGTTGCTCCCACACAATTT 59.696 36.000 0.00 0.00 35.26 1.82
307 308 5.806654 ATTAGTTGCTCCCACACAATTTT 57.193 34.783 0.00 0.00 0.00 1.82
308 309 3.733443 AGTTGCTCCCACACAATTTTC 57.267 42.857 0.00 0.00 0.00 2.29
309 310 3.299503 AGTTGCTCCCACACAATTTTCT 58.700 40.909 0.00 0.00 0.00 2.52
310 311 3.706086 AGTTGCTCCCACACAATTTTCTT 59.294 39.130 0.00 0.00 0.00 2.52
311 312 4.162131 AGTTGCTCCCACACAATTTTCTTT 59.838 37.500 0.00 0.00 0.00 2.52
312 313 4.320608 TGCTCCCACACAATTTTCTTTC 57.679 40.909 0.00 0.00 0.00 2.62
313 314 3.960102 TGCTCCCACACAATTTTCTTTCT 59.040 39.130 0.00 0.00 0.00 2.52
314 315 4.202141 TGCTCCCACACAATTTTCTTTCTG 60.202 41.667 0.00 0.00 0.00 3.02
315 316 4.202151 GCTCCCACACAATTTTCTTTCTGT 60.202 41.667 0.00 0.00 0.00 3.41
316 317 5.009610 GCTCCCACACAATTTTCTTTCTGTA 59.990 40.000 0.00 0.00 0.00 2.74
317 318 6.460953 GCTCCCACACAATTTTCTTTCTGTAA 60.461 38.462 0.00 0.00 0.00 2.41
318 319 7.595819 TCCCACACAATTTTCTTTCTGTAAT 57.404 32.000 0.00 0.00 0.00 1.89
319 320 8.017418 TCCCACACAATTTTCTTTCTGTAATT 57.983 30.769 0.00 0.00 0.00 1.40
320 321 8.141268 TCCCACACAATTTTCTTTCTGTAATTC 58.859 33.333 0.00 0.00 0.00 2.17
321 322 7.925483 CCCACACAATTTTCTTTCTGTAATTCA 59.075 33.333 0.00 0.00 0.00 2.57
322 323 9.480053 CCACACAATTTTCTTTCTGTAATTCAT 57.520 29.630 0.00 0.00 0.00 2.57
333 334 9.778741 TCTTTCTGTAATTCATTGTACTTCTGT 57.221 29.630 0.00 0.00 0.00 3.41
342 343 7.977789 TTCATTGTACTTCTGTAGAATTGCA 57.022 32.000 0.00 0.00 39.60 4.08
343 344 8.565896 TTCATTGTACTTCTGTAGAATTGCAT 57.434 30.769 4.22 0.00 39.60 3.96
344 345 8.565896 TCATTGTACTTCTGTAGAATTGCATT 57.434 30.769 4.22 0.00 39.60 3.56
345 346 8.453320 TCATTGTACTTCTGTAGAATTGCATTG 58.547 33.333 13.48 13.48 39.60 2.82
346 347 6.182039 TGTACTTCTGTAGAATTGCATTGC 57.818 37.500 0.46 0.46 33.01 3.56
347 348 5.704978 TGTACTTCTGTAGAATTGCATTGCA 59.295 36.000 7.38 7.38 36.47 4.08
406 407 3.396260 TTTTAGGACAGGTGGAGTTCG 57.604 47.619 0.00 0.00 0.00 3.95
407 408 2.297698 TTAGGACAGGTGGAGTTCGA 57.702 50.000 0.00 0.00 0.00 3.71
408 409 2.297698 TAGGACAGGTGGAGTTCGAA 57.702 50.000 0.00 0.00 0.00 3.71
409 410 0.969894 AGGACAGGTGGAGTTCGAAG 59.030 55.000 0.00 0.00 0.00 3.79
410 411 0.670854 GGACAGGTGGAGTTCGAAGC 60.671 60.000 0.00 0.00 0.00 3.86
411 412 0.670854 GACAGGTGGAGTTCGAAGCC 60.671 60.000 0.00 3.83 0.00 4.35
412 413 1.122019 ACAGGTGGAGTTCGAAGCCT 61.122 55.000 15.69 3.52 0.00 4.58
413 414 0.671781 CAGGTGGAGTTCGAAGCCTG 60.672 60.000 15.69 14.84 37.71 4.85
414 415 1.122019 AGGTGGAGTTCGAAGCCTGT 61.122 55.000 15.69 1.17 0.00 4.00
415 416 0.670854 GGTGGAGTTCGAAGCCTGTC 60.671 60.000 15.69 8.04 0.00 3.51
416 417 0.670854 GTGGAGTTCGAAGCCTGTCC 60.671 60.000 15.69 9.90 0.00 4.02
417 418 0.832135 TGGAGTTCGAAGCCTGTCCT 60.832 55.000 15.69 0.76 0.00 3.85
418 419 0.390472 GGAGTTCGAAGCCTGTCCTG 60.390 60.000 0.00 0.00 0.00 3.86
419 420 0.390472 GAGTTCGAAGCCTGTCCTGG 60.390 60.000 0.00 0.00 0.00 4.45
428 429 4.729918 CTGTCCTGGCCAGCCCAC 62.730 72.222 28.39 21.60 39.18 4.61
430 431 4.284550 GTCCTGGCCAGCCCACAA 62.285 66.667 28.39 4.70 39.18 3.33
431 432 3.267233 TCCTGGCCAGCCCACAAT 61.267 61.111 28.39 0.00 39.18 2.71
432 433 1.928046 TCCTGGCCAGCCCACAATA 60.928 57.895 28.39 1.39 39.18 1.90
433 434 1.231068 CCTGGCCAGCCCACAATAT 59.769 57.895 28.39 0.00 39.18 1.28
434 435 1.111116 CCTGGCCAGCCCACAATATG 61.111 60.000 28.39 5.53 39.18 1.78
435 436 0.396139 CTGGCCAGCCCACAATATGT 60.396 55.000 22.33 0.00 39.18 2.29
436 437 0.040942 TGGCCAGCCCACAATATGTT 59.959 50.000 0.00 0.00 39.18 2.71
437 438 0.461135 GGCCAGCCCACAATATGTTG 59.539 55.000 0.00 0.00 41.20 3.33
439 440 1.134946 GCCAGCCCACAATATGTTGTC 59.865 52.381 4.66 0.00 45.14 3.18
440 441 2.726821 CCAGCCCACAATATGTTGTCT 58.273 47.619 4.66 0.00 45.14 3.41
441 442 2.684881 CCAGCCCACAATATGTTGTCTC 59.315 50.000 4.66 0.00 45.14 3.36
442 443 2.684881 CAGCCCACAATATGTTGTCTCC 59.315 50.000 4.66 0.00 45.14 3.71
443 444 2.308570 AGCCCACAATATGTTGTCTCCA 59.691 45.455 4.66 0.00 45.14 3.86
444 445 2.423538 GCCCACAATATGTTGTCTCCAC 59.576 50.000 4.66 0.00 45.14 4.02
445 446 3.016736 CCCACAATATGTTGTCTCCACC 58.983 50.000 4.66 0.00 45.14 4.61
446 447 3.016736 CCACAATATGTTGTCTCCACCC 58.983 50.000 4.66 0.00 45.14 4.61
447 448 2.677836 CACAATATGTTGTCTCCACCCG 59.322 50.000 4.66 0.00 45.14 5.28
448 449 2.288666 CAATATGTTGTCTCCACCCGG 58.711 52.381 0.00 0.00 0.00 5.73
449 450 0.837272 ATATGTTGTCTCCACCCGGG 59.163 55.000 22.25 22.25 38.37 5.73
450 451 0.545787 TATGTTGTCTCCACCCGGGT 60.546 55.000 24.16 24.16 38.11 5.28
451 452 1.838073 ATGTTGTCTCCACCCGGGTC 61.838 60.000 27.51 13.48 38.11 4.46
452 453 2.122769 TTGTCTCCACCCGGGTCA 60.123 61.111 27.51 16.46 38.11 4.02
453 454 1.766864 TTGTCTCCACCCGGGTCAA 60.767 57.895 27.51 21.87 38.11 3.18
454 455 1.346479 TTGTCTCCACCCGGGTCAAA 61.346 55.000 27.51 11.35 38.11 2.69
455 456 1.346479 TGTCTCCACCCGGGTCAAAA 61.346 55.000 27.51 7.25 38.11 2.44
456 457 0.179012 GTCTCCACCCGGGTCAAAAA 60.179 55.000 27.51 5.54 38.11 1.94
475 476 5.988310 AAAAATCAGACCATTCAGATGCA 57.012 34.783 0.00 0.00 28.87 3.96
476 477 6.540438 AAAAATCAGACCATTCAGATGCAT 57.460 33.333 0.00 0.00 28.87 3.96
477 478 5.769484 AAATCAGACCATTCAGATGCATC 57.231 39.130 19.37 19.37 28.87 3.91
478 479 3.204306 TCAGACCATTCAGATGCATCC 57.796 47.619 23.06 5.18 31.67 3.51
479 480 2.506644 TCAGACCATTCAGATGCATCCA 59.493 45.455 23.06 7.48 31.67 3.41
480 481 3.054213 TCAGACCATTCAGATGCATCCAA 60.054 43.478 23.06 16.08 31.67 3.53
481 482 3.889538 CAGACCATTCAGATGCATCCAAT 59.110 43.478 23.06 17.55 31.67 3.16
482 483 3.889538 AGACCATTCAGATGCATCCAATG 59.110 43.478 27.50 27.50 31.87 2.82
483 484 2.963101 ACCATTCAGATGCATCCAATGG 59.037 45.455 38.01 38.01 45.03 3.16
484 485 3.227614 CCATTCAGATGCATCCAATGGA 58.772 45.455 37.57 23.06 43.70 3.41
485 486 3.005472 CCATTCAGATGCATCCAATGGAC 59.995 47.826 37.57 13.78 43.70 4.02
486 487 2.353357 TCAGATGCATCCAATGGACC 57.647 50.000 23.06 0.00 32.98 4.46
487 488 1.565288 TCAGATGCATCCAATGGACCA 59.435 47.619 23.06 5.45 32.98 4.02
488 489 2.025131 TCAGATGCATCCAATGGACCAA 60.025 45.455 23.06 0.00 32.98 3.67
489 490 2.100252 CAGATGCATCCAATGGACCAAC 59.900 50.000 23.06 4.05 32.98 3.77
490 491 2.024655 AGATGCATCCAATGGACCAACT 60.025 45.455 23.06 6.43 32.98 3.16
491 492 3.202818 AGATGCATCCAATGGACCAACTA 59.797 43.478 23.06 0.00 32.98 2.24
492 493 3.003394 TGCATCCAATGGACCAACTAG 57.997 47.619 3.09 0.00 32.98 2.57
493 494 2.301346 GCATCCAATGGACCAACTAGG 58.699 52.381 3.09 0.00 45.67 3.02
494 495 2.301346 CATCCAATGGACCAACTAGGC 58.699 52.381 3.09 0.00 43.14 3.93
495 496 0.623723 TCCAATGGACCAACTAGGCC 59.376 55.000 0.00 0.00 43.14 5.19
496 497 0.331278 CCAATGGACCAACTAGGCCA 59.669 55.000 5.01 0.00 44.23 5.36
497 498 1.272425 CCAATGGACCAACTAGGCCAA 60.272 52.381 5.01 0.00 43.63 4.52
498 499 2.524306 CAATGGACCAACTAGGCCAAA 58.476 47.619 5.01 0.00 43.63 3.28
499 500 2.896685 CAATGGACCAACTAGGCCAAAA 59.103 45.455 5.01 0.00 43.63 2.44
500 501 1.989706 TGGACCAACTAGGCCAAAAC 58.010 50.000 5.01 0.00 43.14 2.43
501 502 1.497286 TGGACCAACTAGGCCAAAACT 59.503 47.619 5.01 0.00 43.14 2.66
502 503 2.091555 TGGACCAACTAGGCCAAAACTT 60.092 45.455 5.01 0.00 43.14 2.66
503 504 2.963101 GGACCAACTAGGCCAAAACTTT 59.037 45.455 5.01 0.00 43.14 2.66
504 505 3.005472 GGACCAACTAGGCCAAAACTTTC 59.995 47.826 5.01 0.00 43.14 2.62
505 506 3.889538 GACCAACTAGGCCAAAACTTTCT 59.110 43.478 5.01 0.00 43.14 2.52
506 507 5.056553 ACCAACTAGGCCAAAACTTTCTA 57.943 39.130 5.01 0.00 43.14 2.10
507 508 5.641155 ACCAACTAGGCCAAAACTTTCTAT 58.359 37.500 5.01 0.00 43.14 1.98
508 509 5.710567 ACCAACTAGGCCAAAACTTTCTATC 59.289 40.000 5.01 0.00 43.14 2.08
509 510 5.946377 CCAACTAGGCCAAAACTTTCTATCT 59.054 40.000 5.01 0.00 0.00 1.98
510 511 6.434340 CCAACTAGGCCAAAACTTTCTATCTT 59.566 38.462 5.01 0.00 0.00 2.40
511 512 7.362142 CCAACTAGGCCAAAACTTTCTATCTTC 60.362 40.741 5.01 0.00 0.00 2.87
512 513 7.021998 ACTAGGCCAAAACTTTCTATCTTCT 57.978 36.000 5.01 0.00 0.00 2.85
513 514 8.147244 ACTAGGCCAAAACTTTCTATCTTCTA 57.853 34.615 5.01 0.00 0.00 2.10
514 515 8.261522 ACTAGGCCAAAACTTTCTATCTTCTAG 58.738 37.037 5.01 0.00 0.00 2.43
515 516 7.259088 AGGCCAAAACTTTCTATCTTCTAGA 57.741 36.000 5.01 0.00 0.00 2.43
516 517 7.690256 AGGCCAAAACTTTCTATCTTCTAGAA 58.310 34.615 5.01 4.81 0.00 2.10
517 518 7.608376 AGGCCAAAACTTTCTATCTTCTAGAAC 59.392 37.037 5.01 0.00 33.73 3.01
518 519 7.148222 GGCCAAAACTTTCTATCTTCTAGAACC 60.148 40.741 0.00 0.00 33.73 3.62
519 520 7.413109 GCCAAAACTTTCTATCTTCTAGAACCG 60.413 40.741 0.00 0.00 33.73 4.44
520 521 7.064728 CCAAAACTTTCTATCTTCTAGAACCGG 59.935 40.741 0.00 0.00 33.73 5.28
521 522 5.855740 ACTTTCTATCTTCTAGAACCGGG 57.144 43.478 6.32 0.00 33.73 5.73
522 523 4.099727 ACTTTCTATCTTCTAGAACCGGGC 59.900 45.833 6.32 0.00 33.73 6.13
523 524 2.228059 TCTATCTTCTAGAACCGGGCG 58.772 52.381 6.32 0.00 0.00 6.13
524 525 1.269998 CTATCTTCTAGAACCGGGCGG 59.730 57.143 6.32 0.00 42.03 6.13
525 526 2.029307 ATCTTCTAGAACCGGGCGGC 62.029 60.000 6.32 0.00 39.32 6.53
526 527 3.735037 CTTCTAGAACCGGGCGGCC 62.735 68.421 20.04 20.04 39.32 6.13
527 528 4.772231 TCTAGAACCGGGCGGCCT 62.772 66.667 27.04 7.30 39.32 5.19
528 529 4.222847 CTAGAACCGGGCGGCCTC 62.223 72.222 27.04 16.92 39.32 4.70
529 530 4.772231 TAGAACCGGGCGGCCTCT 62.772 66.667 27.04 23.05 39.32 3.69
530 531 3.363410 TAGAACCGGGCGGCCTCTA 62.363 63.158 27.04 21.98 39.32 2.43
531 532 2.651841 TAGAACCGGGCGGCCTCTAT 62.652 60.000 27.04 9.36 39.32 1.98
532 533 3.516866 GAACCGGGCGGCCTCTATC 62.517 68.421 27.04 14.52 39.32 2.08
533 534 4.853142 ACCGGGCGGCCTCTATCA 62.853 66.667 27.04 0.00 39.32 2.15
534 535 3.546543 CCGGGCGGCCTCTATCAA 61.547 66.667 27.04 0.00 0.00 2.57
535 536 2.280186 CGGGCGGCCTCTATCAAC 60.280 66.667 27.04 0.00 0.00 3.18
536 537 2.797278 CGGGCGGCCTCTATCAACT 61.797 63.158 27.04 0.00 0.00 3.16
537 538 1.227674 GGGCGGCCTCTATCAACTG 60.228 63.158 22.87 0.00 0.00 3.16
538 539 1.686325 GGGCGGCCTCTATCAACTGA 61.686 60.000 22.87 0.00 0.00 3.41
539 540 0.530870 GGCGGCCTCTATCAACTGAC 60.531 60.000 12.87 0.00 0.00 3.51
540 541 0.530870 GCGGCCTCTATCAACTGACC 60.531 60.000 0.00 0.00 0.00 4.02
541 542 0.249073 CGGCCTCTATCAACTGACCG 60.249 60.000 0.00 0.00 0.00 4.79
542 543 0.824759 GGCCTCTATCAACTGACCGT 59.175 55.000 0.00 0.00 0.00 4.83
543 544 1.202428 GGCCTCTATCAACTGACCGTC 60.202 57.143 0.00 0.00 0.00 4.79
544 545 1.202428 GCCTCTATCAACTGACCGTCC 60.202 57.143 0.00 0.00 0.00 4.79
545 546 2.379972 CCTCTATCAACTGACCGTCCT 58.620 52.381 0.00 0.00 0.00 3.85
546 547 2.099921 CCTCTATCAACTGACCGTCCTG 59.900 54.545 0.00 0.00 0.00 3.86
547 548 2.755655 CTCTATCAACTGACCGTCCTGT 59.244 50.000 0.00 0.00 0.00 4.00
548 549 2.753452 TCTATCAACTGACCGTCCTGTC 59.247 50.000 0.00 0.00 35.77 3.51
549 550 1.338107 ATCAACTGACCGTCCTGTCA 58.662 50.000 0.00 0.00 42.75 3.58
553 554 4.923068 TGACCGTCCTGTCAGTCT 57.077 55.556 0.00 0.00 40.22 3.24
554 555 2.341452 TGACCGTCCTGTCAGTCTG 58.659 57.895 0.00 0.00 40.22 3.51
555 556 0.467474 TGACCGTCCTGTCAGTCTGT 60.467 55.000 0.00 0.00 40.22 3.41
556 557 0.241481 GACCGTCCTGTCAGTCTGTC 59.759 60.000 0.00 0.00 35.29 3.51
557 558 1.179814 ACCGTCCTGTCAGTCTGTCC 61.180 60.000 0.00 0.00 0.00 4.02
558 559 1.587054 CGTCCTGTCAGTCTGTCCC 59.413 63.158 0.00 0.00 0.00 4.46
559 560 0.896019 CGTCCTGTCAGTCTGTCCCT 60.896 60.000 0.00 0.00 0.00 4.20
560 561 0.892063 GTCCTGTCAGTCTGTCCCTC 59.108 60.000 0.00 0.00 0.00 4.30
561 562 0.482887 TCCTGTCAGTCTGTCCCTCA 59.517 55.000 0.00 0.00 0.00 3.86
562 563 1.133167 TCCTGTCAGTCTGTCCCTCAA 60.133 52.381 0.00 0.00 0.00 3.02
563 564 1.001406 CCTGTCAGTCTGTCCCTCAAC 59.999 57.143 0.00 0.00 0.00 3.18
564 565 0.673985 TGTCAGTCTGTCCCTCAACG 59.326 55.000 0.00 0.00 0.00 4.10
565 566 0.667792 GTCAGTCTGTCCCTCAACGC 60.668 60.000 0.00 0.00 0.00 4.84
566 567 1.374758 CAGTCTGTCCCTCAACGCC 60.375 63.158 0.00 0.00 0.00 5.68
567 568 2.047179 GTCTGTCCCTCAACGCCC 60.047 66.667 0.00 0.00 0.00 6.13
568 569 3.691342 TCTGTCCCTCAACGCCCG 61.691 66.667 0.00 0.00 0.00 6.13
589 590 3.941035 CGCACGTCGTAGGGTTTT 58.059 55.556 0.00 0.00 0.00 2.43
590 591 3.105514 CGCACGTCGTAGGGTTTTA 57.894 52.632 0.00 0.00 0.00 1.52
591 592 0.710017 CGCACGTCGTAGGGTTTTAC 59.290 55.000 0.00 0.00 0.00 2.01
592 593 1.070821 GCACGTCGTAGGGTTTTACC 58.929 55.000 0.00 0.00 37.60 2.85
593 594 1.339711 CACGTCGTAGGGTTTTACCG 58.660 55.000 0.00 0.00 39.83 4.02
594 595 0.243636 ACGTCGTAGGGTTTTACCGG 59.756 55.000 0.00 0.00 39.83 5.28
595 596 1.078201 CGTCGTAGGGTTTTACCGGC 61.078 60.000 0.00 0.00 39.83 6.13
596 597 0.740868 GTCGTAGGGTTTTACCGGCC 60.741 60.000 0.00 0.00 39.83 6.13
597 598 1.450134 CGTAGGGTTTTACCGGCCC 60.450 63.158 0.00 2.97 39.83 5.80
598 599 1.450134 GTAGGGTTTTACCGGCCCG 60.450 63.158 0.00 0.00 46.69 6.13
599 600 3.328093 TAGGGTTTTACCGGCCCGC 62.328 63.158 0.00 0.00 46.69 6.13
601 602 4.728110 GGTTTTACCGGCCCGCCT 62.728 66.667 0.00 0.00 0.00 5.52
602 603 3.129502 GTTTTACCGGCCCGCCTC 61.130 66.667 0.00 0.00 0.00 4.70
603 604 3.638316 TTTTACCGGCCCGCCTCA 61.638 61.111 0.00 0.00 0.00 3.86
604 605 3.905437 TTTTACCGGCCCGCCTCAC 62.905 63.158 0.00 0.00 0.00 3.51
625 626 4.033776 CACACCGGCCTCCACCAT 62.034 66.667 0.00 0.00 0.00 3.55
626 627 2.285069 ACACCGGCCTCCACCATA 60.285 61.111 0.00 0.00 0.00 2.74
627 628 1.692749 ACACCGGCCTCCACCATAT 60.693 57.895 0.00 0.00 0.00 1.78
628 629 0.399376 ACACCGGCCTCCACCATATA 60.399 55.000 0.00 0.00 0.00 0.86
629 630 0.984230 CACCGGCCTCCACCATATAT 59.016 55.000 0.00 0.00 0.00 0.86
630 631 1.066143 CACCGGCCTCCACCATATATC 60.066 57.143 0.00 0.00 0.00 1.63
631 632 1.275666 CCGGCCTCCACCATATATCA 58.724 55.000 0.00 0.00 0.00 2.15
632 633 1.839994 CCGGCCTCCACCATATATCAT 59.160 52.381 0.00 0.00 0.00 2.45
633 634 2.239654 CCGGCCTCCACCATATATCATT 59.760 50.000 0.00 0.00 0.00 2.57
634 635 3.273434 CGGCCTCCACCATATATCATTG 58.727 50.000 0.00 0.00 0.00 2.82
635 636 3.055167 CGGCCTCCACCATATATCATTGA 60.055 47.826 0.00 0.00 0.00 2.57
636 637 4.521146 GGCCTCCACCATATATCATTGAG 58.479 47.826 0.00 0.00 0.00 3.02
637 638 3.944015 GCCTCCACCATATATCATTGAGC 59.056 47.826 0.00 0.00 0.00 4.26
638 639 4.324099 GCCTCCACCATATATCATTGAGCT 60.324 45.833 0.00 0.00 0.00 4.09
639 640 5.183969 CCTCCACCATATATCATTGAGCTG 58.816 45.833 0.00 0.00 0.00 4.24
640 641 4.582869 TCCACCATATATCATTGAGCTGC 58.417 43.478 0.00 0.00 0.00 5.25
641 642 3.693085 CCACCATATATCATTGAGCTGCC 59.307 47.826 0.00 0.00 0.00 4.85
642 643 4.567116 CCACCATATATCATTGAGCTGCCT 60.567 45.833 0.00 0.00 0.00 4.75
643 644 4.634883 CACCATATATCATTGAGCTGCCTC 59.365 45.833 0.00 0.00 38.62 4.70
644 645 4.197750 CCATATATCATTGAGCTGCCTCC 58.802 47.826 0.00 0.00 37.29 4.30
645 646 4.324022 CCATATATCATTGAGCTGCCTCCA 60.324 45.833 0.00 0.00 37.29 3.86
646 647 2.627515 TATCATTGAGCTGCCTCCAC 57.372 50.000 0.00 0.00 37.29 4.02
647 648 0.622136 ATCATTGAGCTGCCTCCACA 59.378 50.000 0.00 0.00 37.29 4.17
648 649 0.321919 TCATTGAGCTGCCTCCACAC 60.322 55.000 0.00 0.00 37.29 3.82
649 650 0.607217 CATTGAGCTGCCTCCACACA 60.607 55.000 0.00 0.00 37.29 3.72
650 651 0.111061 ATTGAGCTGCCTCCACACAA 59.889 50.000 0.00 0.00 37.29 3.33
685 689 3.306780 CGTCCCTCTCAGTAAACCATTGT 60.307 47.826 0.00 0.00 0.00 2.71
786 817 0.824109 TGTTGTCTCTCGGGCCTATG 59.176 55.000 0.84 0.00 0.00 2.23
847 878 3.007581 GGGCTACCTTCTTCCCTCA 57.992 57.895 0.00 0.00 35.87 3.86
848 879 0.542333 GGGCTACCTTCTTCCCTCAC 59.458 60.000 0.00 0.00 35.87 3.51
849 880 0.542333 GGCTACCTTCTTCCCTCACC 59.458 60.000 0.00 0.00 0.00 4.02
850 881 1.574263 GCTACCTTCTTCCCTCACCT 58.426 55.000 0.00 0.00 0.00 4.00
851 882 1.483004 GCTACCTTCTTCCCTCACCTC 59.517 57.143 0.00 0.00 0.00 3.85
852 883 2.821437 CTACCTTCTTCCCTCACCTCA 58.179 52.381 0.00 0.00 0.00 3.86
853 884 2.350863 ACCTTCTTCCCTCACCTCAT 57.649 50.000 0.00 0.00 0.00 2.90
867 898 1.767681 ACCTCATGGCCTCTTCATCTC 59.232 52.381 3.32 0.00 36.63 2.75
871 902 2.842496 TCATGGCCTCTTCATCTCAACT 59.158 45.455 3.32 0.00 0.00 3.16
874 905 4.207891 TGGCCTCTTCATCTCAACTAAC 57.792 45.455 3.32 0.00 0.00 2.34
875 906 3.055094 TGGCCTCTTCATCTCAACTAACC 60.055 47.826 3.32 0.00 0.00 2.85
876 907 3.190874 GCCTCTTCATCTCAACTAACCG 58.809 50.000 0.00 0.00 0.00 4.44
878 909 4.425520 CCTCTTCATCTCAACTAACCGTC 58.574 47.826 0.00 0.00 0.00 4.79
879 910 4.425520 CTCTTCATCTCAACTAACCGTCC 58.574 47.826 0.00 0.00 0.00 4.79
881 912 1.475280 TCATCTCAACTAACCGTCCCG 59.525 52.381 0.00 0.00 0.00 5.14
882 913 1.203994 CATCTCAACTAACCGTCCCGT 59.796 52.381 0.00 0.00 0.00 5.28
925 962 4.201910 CGTCGTAGGGTTTTACCGATTCTA 60.202 45.833 0.00 0.00 39.83 2.10
1172 1230 1.122019 AACGGTGAGTGCCCTTCTCT 61.122 55.000 0.00 0.00 33.59 3.10
1179 1237 0.832135 AGTGCCCTTCTCTCGTTCCA 60.832 55.000 0.00 0.00 0.00 3.53
1214 1282 2.913765 TTTGGTTGTCGCATGCCGG 61.914 57.895 13.15 0.00 37.59 6.13
1232 1376 1.202268 CGGCGGAGGTTGTTAGTCTAG 60.202 57.143 0.00 0.00 0.00 2.43
1275 1419 2.051703 CGTGTGGCCCGTTTTTCG 60.052 61.111 0.00 0.00 39.52 3.46
1292 1436 0.522626 TCGGCGATTCACAGTTCGTA 59.477 50.000 4.99 0.00 37.66 3.43
1294 1438 1.320555 CGGCGATTCACAGTTCGTAAG 59.679 52.381 0.00 0.00 37.66 2.34
1296 1440 2.602878 GCGATTCACAGTTCGTAAGGA 58.397 47.619 0.00 0.00 37.66 3.36
1313 1462 4.414337 AAGGATGGTAGATGCAGAGAAC 57.586 45.455 0.00 0.00 0.00 3.01
1339 1488 3.996363 CACAGCTTTTCTTTTTATGGGCC 59.004 43.478 0.00 0.00 0.00 5.80
1355 1504 2.165998 GGGCCCATTAATGATGAGCTC 58.834 52.381 19.95 6.82 39.28 4.09
1397 1550 4.333913 GCTGGAGCTCATTGATCTAAGA 57.666 45.455 17.19 0.00 38.21 2.10
1398 1551 4.057432 GCTGGAGCTCATTGATCTAAGAC 58.943 47.826 17.19 0.00 38.21 3.01
1405 1558 3.993081 CTCATTGATCTAAGACGATGGGC 59.007 47.826 0.00 0.00 0.00 5.36
1406 1559 3.643320 TCATTGATCTAAGACGATGGGCT 59.357 43.478 0.00 0.00 0.00 5.19
1407 1560 3.459232 TTGATCTAAGACGATGGGCTG 57.541 47.619 0.00 0.00 0.00 4.85
1414 1567 2.322355 AGACGATGGGCTGAATGAAG 57.678 50.000 0.00 0.00 0.00 3.02
1472 1627 0.478072 TGGGTTGTTCCTGTGCTGAT 59.522 50.000 0.00 0.00 36.25 2.90
1476 1631 1.537202 GTTGTTCCTGTGCTGATGGTC 59.463 52.381 0.00 0.00 0.00 4.02
1487 1642 2.224549 TGCTGATGGTCGGTTTTTAACG 59.775 45.455 0.00 0.00 0.00 3.18
1489 1644 3.068560 CTGATGGTCGGTTTTTAACGGA 58.931 45.455 0.00 0.00 38.25 4.69
1506 1661 3.416156 ACGGAGTTAGTTTCTACGGAGT 58.584 45.455 0.00 0.00 37.78 3.85
1507 1662 3.823304 ACGGAGTTAGTTTCTACGGAGTT 59.177 43.478 0.00 0.00 31.82 3.01
1508 1663 5.003804 ACGGAGTTAGTTTCTACGGAGTTA 58.996 41.667 0.00 0.00 31.82 2.24
1509 1664 5.123027 ACGGAGTTAGTTTCTACGGAGTTAG 59.877 44.000 0.00 0.00 31.82 2.34
1559 1714 5.357878 GGTCATTAATCATCTGGACAAGCAA 59.642 40.000 4.37 0.00 0.00 3.91
1571 1726 5.471797 TCTGGACAAGCAATTTATCACGAAA 59.528 36.000 0.00 0.00 0.00 3.46
1660 1815 2.435059 GGCGCAACAGGAGGAGAC 60.435 66.667 10.83 0.00 0.00 3.36
1737 1892 1.132462 AGGAGCTCATCAGGATGGGAT 60.132 52.381 17.19 6.46 41.20 3.85
1781 1936 2.097036 GGGTACACCAAGGCCATTAAC 58.903 52.381 5.01 0.00 39.85 2.01
1826 2016 8.097038 TGACTAGGCATTGTATTATTCATCCTC 58.903 37.037 0.00 0.00 0.00 3.71
1830 2024 6.939163 AGGCATTGTATTATTCATCCTCTCAC 59.061 38.462 0.00 0.00 0.00 3.51
1864 2058 2.492019 GCAACTCCTGCGTTTCTTTT 57.508 45.000 0.00 0.00 42.37 2.27
1866 2060 3.297472 GCAACTCCTGCGTTTCTTTTAC 58.703 45.455 0.00 0.00 42.37 2.01
1867 2061 3.242936 GCAACTCCTGCGTTTCTTTTACA 60.243 43.478 0.00 0.00 42.37 2.41
1869 2063 5.334569 GCAACTCCTGCGTTTCTTTTACATA 60.335 40.000 0.00 0.00 42.37 2.29
1873 2067 6.879458 ACTCCTGCGTTTCTTTTACATATCTT 59.121 34.615 0.00 0.00 0.00 2.40
1875 2069 7.526608 TCCTGCGTTTCTTTTACATATCTTTG 58.473 34.615 0.00 0.00 0.00 2.77
1876 2070 7.174253 TCCTGCGTTTCTTTTACATATCTTTGT 59.826 33.333 0.00 0.00 0.00 2.83
1877 2071 8.447833 CCTGCGTTTCTTTTACATATCTTTGTA 58.552 33.333 0.00 0.00 0.00 2.41
1878 2072 9.988350 CTGCGTTTCTTTTACATATCTTTGTAT 57.012 29.630 0.00 0.00 32.39 2.29
1893 2087 1.155889 TGTATTGTGCAGACGCTTGG 58.844 50.000 0.00 0.00 39.64 3.61
1921 2115 4.689062 TGGAGGATCTAGTTGAGAAAGGT 58.311 43.478 0.00 0.00 37.85 3.50
1924 2118 5.395879 GGAGGATCTAGTTGAGAAAGGTTCC 60.396 48.000 0.00 0.00 37.85 3.62
1999 2193 2.145536 GTTGCCAGCAAGATTTTTGGG 58.854 47.619 5.07 0.00 36.52 4.12
2009 2203 3.479866 AGATTTTTGGGCAGGAGGATT 57.520 42.857 0.00 0.00 0.00 3.01
2024 2218 3.559171 GGAGGATTTGCTGTGTCCACTTA 60.559 47.826 0.00 0.00 34.42 2.24
2043 2237 5.928839 CACTTATCGCTGATGTAGGCTAATT 59.071 40.000 0.00 0.00 0.00 1.40
2071 2265 4.258543 CACCTTAATTACCCGAGAGCAAA 58.741 43.478 0.00 0.00 0.00 3.68
2072 2266 4.332819 CACCTTAATTACCCGAGAGCAAAG 59.667 45.833 0.00 0.00 0.00 2.77
2073 2267 3.312697 CCTTAATTACCCGAGAGCAAAGC 59.687 47.826 0.00 0.00 0.00 3.51
2074 2268 2.489938 AATTACCCGAGAGCAAAGCA 57.510 45.000 0.00 0.00 0.00 3.91
2131 2329 7.942341 AGGGTTGTTCTGTTTCATCTGTTTATA 59.058 33.333 0.00 0.00 0.00 0.98
2175 2373 0.966179 GTTTGCCCAGAAAATCCGGT 59.034 50.000 0.00 0.00 0.00 5.28
2239 2437 0.455633 GCAGCCTGCACAATTCTTCG 60.456 55.000 12.82 0.00 44.26 3.79
2294 2492 4.278170 CAGTTGGGAGCATAACAAAAGTGA 59.722 41.667 0.00 0.00 0.00 3.41
2356 2561 8.236586 TGTGCTTTTGTCAATAATCTGTGTATC 58.763 33.333 0.00 0.00 0.00 2.24
2421 2633 8.548877 ACAATTCCCACATTGTAGAGTACTAAT 58.451 33.333 0.00 0.00 44.08 1.73
2422 2634 8.830580 CAATTCCCACATTGTAGAGTACTAATG 58.169 37.037 12.53 12.53 35.38 1.90
2450 2662 1.604604 GTGCTGCCACTTCCTAACAA 58.395 50.000 0.00 0.00 38.93 2.83
2494 2794 8.621286 TCTGTAACTCAAAATTGAACCTTTCTC 58.379 33.333 0.00 0.00 36.64 2.87
2588 3306 4.861462 GCTTAGTTGGTCTTCGGTAGTTAC 59.139 45.833 0.00 0.00 0.00 2.50
2589 3307 5.336293 GCTTAGTTGGTCTTCGGTAGTTACT 60.336 44.000 0.00 0.00 0.00 2.24
2590 3308 4.780275 AGTTGGTCTTCGGTAGTTACTC 57.220 45.455 0.00 0.00 0.00 2.59
2591 3309 3.509184 AGTTGGTCTTCGGTAGTTACTCC 59.491 47.826 0.00 0.00 0.00 3.85
2592 3310 2.450476 TGGTCTTCGGTAGTTACTCCC 58.550 52.381 0.00 0.00 0.00 4.30
2593 3311 2.042162 TGGTCTTCGGTAGTTACTCCCT 59.958 50.000 0.00 0.00 0.00 4.20
2594 3312 2.687425 GGTCTTCGGTAGTTACTCCCTC 59.313 54.545 0.00 0.00 0.00 4.30
2595 3313 2.687425 GTCTTCGGTAGTTACTCCCTCC 59.313 54.545 0.00 0.00 0.00 4.30
2596 3314 1.674962 CTTCGGTAGTTACTCCCTCCG 59.325 57.143 10.25 10.25 39.40 4.63
2597 3315 0.620556 TCGGTAGTTACTCCCTCCGT 59.379 55.000 13.99 0.00 39.14 4.69
2598 3316 1.020437 CGGTAGTTACTCCCTCCGTC 58.980 60.000 0.00 0.00 34.38 4.79
2599 3317 1.397672 GGTAGTTACTCCCTCCGTCC 58.602 60.000 0.00 0.00 0.00 4.79
2600 3318 1.397672 GTAGTTACTCCCTCCGTCCC 58.602 60.000 0.00 0.00 0.00 4.46
2601 3319 1.002069 TAGTTACTCCCTCCGTCCCA 58.998 55.000 0.00 0.00 0.00 4.37
2602 3320 0.338814 AGTTACTCCCTCCGTCCCAT 59.661 55.000 0.00 0.00 0.00 4.00
2603 3321 1.572415 AGTTACTCCCTCCGTCCCATA 59.428 52.381 0.00 0.00 0.00 2.74
2604 3322 2.023695 AGTTACTCCCTCCGTCCCATAA 60.024 50.000 0.00 0.00 0.00 1.90
2605 3323 2.970640 GTTACTCCCTCCGTCCCATAAT 59.029 50.000 0.00 0.00 0.00 1.28
2606 3324 1.424638 ACTCCCTCCGTCCCATAATG 58.575 55.000 0.00 0.00 0.00 1.90
2607 3325 1.344087 ACTCCCTCCGTCCCATAATGT 60.344 52.381 0.00 0.00 0.00 2.71
2608 3326 2.090943 ACTCCCTCCGTCCCATAATGTA 60.091 50.000 0.00 0.00 0.00 2.29
2609 3327 2.969950 CTCCCTCCGTCCCATAATGTAA 59.030 50.000 0.00 0.00 0.00 2.41
2610 3328 2.969950 TCCCTCCGTCCCATAATGTAAG 59.030 50.000 0.00 0.00 0.00 2.34
2611 3329 2.969950 CCCTCCGTCCCATAATGTAAGA 59.030 50.000 0.00 0.00 0.00 2.10
2612 3330 3.244112 CCCTCCGTCCCATAATGTAAGAC 60.244 52.174 0.00 0.00 0.00 3.01
2614 3332 3.025978 TCCGTCCCATAATGTAAGACGT 58.974 45.455 9.63 0.00 46.62 4.34
2615 3333 3.448301 TCCGTCCCATAATGTAAGACGTT 59.552 43.478 9.63 0.00 46.62 3.99
2616 3334 4.081531 TCCGTCCCATAATGTAAGACGTTT 60.082 41.667 9.63 0.00 46.62 3.60
2617 3335 4.632688 CCGTCCCATAATGTAAGACGTTTT 59.367 41.667 9.63 0.00 46.62 2.43
2618 3336 5.122711 CCGTCCCATAATGTAAGACGTTTTT 59.877 40.000 9.63 0.00 46.62 1.94
2663 3381 3.720949 CGTCTTACATTATGGGACGGA 57.279 47.619 20.50 2.30 43.69 4.69
2664 3382 3.639538 CGTCTTACATTATGGGACGGAG 58.360 50.000 20.50 2.74 43.69 4.63
2665 3383 3.552273 CGTCTTACATTATGGGACGGAGG 60.552 52.174 20.50 5.87 43.69 4.30
2666 3384 2.969950 TCTTACATTATGGGACGGAGGG 59.030 50.000 0.00 0.00 0.00 4.30
2667 3385 2.779429 TACATTATGGGACGGAGGGA 57.221 50.000 0.00 0.00 0.00 4.20
2668 3386 1.424638 ACATTATGGGACGGAGGGAG 58.575 55.000 0.00 0.00 0.00 4.30
2669 3387 1.344087 ACATTATGGGACGGAGGGAGT 60.344 52.381 0.00 0.00 0.00 3.85
2670 3388 2.090943 ACATTATGGGACGGAGGGAGTA 60.091 50.000 0.00 0.00 0.00 2.59
2737 3460 7.999679 TCTATGAAAATTTTGGCATACAGAGG 58.000 34.615 8.47 0.12 0.00 3.69
2748 3471 4.763279 TGGCATACAGAGGCAATCATTATG 59.237 41.667 0.00 0.00 38.71 1.90
2749 3472 4.157289 GGCATACAGAGGCAATCATTATGG 59.843 45.833 0.00 0.00 32.69 2.74
2761 3485 5.048224 GCAATCATTATGGCTTATGCTCTGT 60.048 40.000 0.13 0.00 39.59 3.41
3112 3852 5.582269 TGTTCTTATACATTCTGCTGAGCAC 59.418 40.000 1.40 0.00 33.79 4.40
3113 3853 4.697514 TCTTATACATTCTGCTGAGCACC 58.302 43.478 1.40 0.00 33.79 5.01
3129 3883 6.682423 TGAGCACCTATGTTCATTGTTATG 57.318 37.500 0.00 0.00 40.73 1.90
3171 3926 2.485479 GGTTCACTGCACTCAGAAAGGA 60.485 50.000 0.00 0.00 42.95 3.36
3221 3977 9.456147 TGCAAACATGTGTAGTAACCTTATAAT 57.544 29.630 0.00 0.00 0.00 1.28
3395 4151 4.558470 CGTTACAAGTCGGTATTTCGCTTA 59.442 41.667 0.00 0.00 0.00 3.09
3493 4249 9.762381 ATTAATTGGAGGTTGTAATAGTGGAAA 57.238 29.630 0.00 0.00 0.00 3.13
3549 4305 6.038356 CCATGATTTGATCCTGCTTTACAAC 58.962 40.000 0.00 0.00 0.00 3.32
3556 4312 6.299805 TGATCCTGCTTTACAACTGATACT 57.700 37.500 0.00 0.00 0.00 2.12
3557 4313 6.711277 TGATCCTGCTTTACAACTGATACTT 58.289 36.000 0.00 0.00 0.00 2.24
3558 4314 6.818644 TGATCCTGCTTTACAACTGATACTTC 59.181 38.462 0.00 0.00 0.00 3.01
3559 4315 6.360370 TCCTGCTTTACAACTGATACTTCT 57.640 37.500 0.00 0.00 0.00 2.85
3560 4316 7.476540 TCCTGCTTTACAACTGATACTTCTA 57.523 36.000 0.00 0.00 0.00 2.10
3561 4317 7.903145 TCCTGCTTTACAACTGATACTTCTAA 58.097 34.615 0.00 0.00 0.00 2.10
3672 4434 3.826729 AGCACTTGTAATTTCTGGGTTCC 59.173 43.478 0.00 0.00 0.00 3.62
3812 4574 0.171231 GAAGAAATTGGCGGTGCTCC 59.829 55.000 0.00 0.00 0.00 4.70
3885 4679 4.874396 TCTCAACATATCTGCTTTGCTCTG 59.126 41.667 0.00 0.00 0.00 3.35
3934 4728 3.074538 AGGTGGAAATTCAGTGGCTACTT 59.925 43.478 0.00 0.00 34.07 2.24
3996 4790 4.290711 TGAAAGAGCTGTTGATGATGGA 57.709 40.909 0.00 0.00 0.00 3.41
4056 4852 3.667360 ACCAATCTCCTTGCATTTTTGC 58.333 40.909 0.00 0.00 33.20 3.68
4061 4859 6.540914 CCAATCTCCTTGCATTTTTGCATTAT 59.459 34.615 0.95 0.00 44.94 1.28
4065 4863 6.591062 TCTCCTTGCATTTTTGCATTATTCAC 59.409 34.615 0.95 0.00 44.94 3.18
4069 4867 5.405797 TGCATTTTTGCATTATTCACGCTA 58.594 33.333 0.00 0.00 40.23 4.26
4111 4909 9.290988 TGTGAAATGTAATATAACTGTTGGTGT 57.709 29.630 2.69 0.00 0.00 4.16
4161 4959 3.637229 GACAGTCGGATTATTCCTGGAGA 59.363 47.826 0.00 0.00 40.17 3.71
4366 5166 4.256110 TGTCTCATGCATTTCCAGTACAG 58.744 43.478 0.00 0.00 0.00 2.74
4860 5807 7.907214 ACATTACAAAGTAAGCCTTACTCAG 57.093 36.000 17.09 14.26 45.33 3.35
4867 5977 5.523438 AGTAAGCCTTACTCAGCATCTAC 57.477 43.478 11.36 0.00 42.62 2.59
4880 5990 6.070538 ACTCAGCATCTACTTGTCAATAGGTT 60.071 38.462 0.00 0.00 0.00 3.50
4903 6013 7.309177 GTTTGGAAATCCTTCTAGAAGCTTTC 58.691 38.462 29.05 29.05 37.57 2.62
4909 6019 9.167311 GAAATCCTTCTAGAAGCTTTCACAATA 57.833 33.333 30.36 11.47 37.85 1.90
4914 6024 7.984050 CCTTCTAGAAGCTTTCACAATATCTGA 59.016 37.037 24.58 0.00 37.11 3.27
5256 8392 9.056005 TGTCATCTTCATATGCATAAAACTACC 57.944 33.333 11.13 0.00 0.00 3.18
5367 8507 5.659971 GGTATGGACACTACTAGGAAAAGGA 59.340 44.000 0.00 0.00 0.00 3.36
5373 8513 8.117956 TGGACACTACTAGGAAAAGGACTATAA 58.882 37.037 0.00 0.00 0.00 0.98
5467 8607 5.155278 TGGTACGTCATTAGTGTCCAAAT 57.845 39.130 0.00 0.00 0.00 2.32
5468 8608 6.283544 TGGTACGTCATTAGTGTCCAAATA 57.716 37.500 0.00 0.00 0.00 1.40
5469 8609 6.101332 TGGTACGTCATTAGTGTCCAAATAC 58.899 40.000 0.00 0.00 0.00 1.89
5470 8610 6.071221 TGGTACGTCATTAGTGTCCAAATACT 60.071 38.462 0.00 0.00 0.00 2.12
5471 8611 7.122501 TGGTACGTCATTAGTGTCCAAATACTA 59.877 37.037 0.00 0.00 0.00 1.82
5472 8612 7.975616 GGTACGTCATTAGTGTCCAAATACTAA 59.024 37.037 0.00 0.00 41.50 2.24
5473 8613 9.525409 GTACGTCATTAGTGTCCAAATACTAAT 57.475 33.333 0.00 0.00 45.40 1.73
5475 8615 9.745880 ACGTCATTAGTGTCCAAATACTAATAG 57.254 33.333 8.73 6.94 43.76 1.73
5476 8616 8.700644 CGTCATTAGTGTCCAAATACTAATAGC 58.299 37.037 8.73 5.30 43.76 2.97
5477 8617 8.700644 GTCATTAGTGTCCAAATACTAATAGCG 58.299 37.037 8.73 0.16 43.76 4.26
5478 8618 7.384115 TCATTAGTGTCCAAATACTAATAGCGC 59.616 37.037 0.00 0.00 43.76 5.92
5479 8619 5.018539 AGTGTCCAAATACTAATAGCGCA 57.981 39.130 11.47 0.00 0.00 6.09
5480 8620 4.809426 AGTGTCCAAATACTAATAGCGCAC 59.191 41.667 11.47 0.00 0.00 5.34
5481 8621 4.025145 GTGTCCAAATACTAATAGCGCACC 60.025 45.833 11.47 0.00 0.00 5.01
5482 8622 4.124238 GTCCAAATACTAATAGCGCACCA 58.876 43.478 11.47 0.00 0.00 4.17
5483 8623 4.025145 GTCCAAATACTAATAGCGCACCAC 60.025 45.833 11.47 0.00 0.00 4.16
5484 8624 3.874543 CCAAATACTAATAGCGCACCACA 59.125 43.478 11.47 0.00 0.00 4.17
5485 8625 4.515191 CCAAATACTAATAGCGCACCACAT 59.485 41.667 11.47 0.00 0.00 3.21
5486 8626 5.334105 CCAAATACTAATAGCGCACCACATC 60.334 44.000 11.47 0.00 0.00 3.06
5487 8627 2.240493 ACTAATAGCGCACCACATCC 57.760 50.000 11.47 0.00 0.00 3.51
5488 8628 1.484653 ACTAATAGCGCACCACATCCA 59.515 47.619 11.47 0.00 0.00 3.41
5489 8629 2.104792 ACTAATAGCGCACCACATCCAT 59.895 45.455 11.47 0.00 0.00 3.41
5490 8630 1.311859 AATAGCGCACCACATCCATG 58.688 50.000 11.47 0.00 0.00 3.66
5491 8631 0.469494 ATAGCGCACCACATCCATGA 59.531 50.000 11.47 0.00 0.00 3.07
5492 8632 0.469494 TAGCGCACCACATCCATGAT 59.531 50.000 11.47 0.00 0.00 2.45
5493 8633 1.099295 AGCGCACCACATCCATGATG 61.099 55.000 11.47 2.62 44.71 3.07
5494 8634 1.357690 CGCACCACATCCATGATGC 59.642 57.895 4.05 0.20 43.15 3.91
5495 8635 1.357690 GCACCACATCCATGATGCG 59.642 57.895 4.05 0.00 43.15 4.73
5496 8636 1.357690 CACCACATCCATGATGCGC 59.642 57.895 0.00 0.00 43.15 6.09
5497 8637 1.825191 ACCACATCCATGATGCGCC 60.825 57.895 4.18 0.00 43.15 6.53
5498 8638 1.824760 CCACATCCATGATGCGCCA 60.825 57.895 4.18 0.00 43.15 5.69
5499 8639 1.357690 CACATCCATGATGCGCCAC 59.642 57.895 4.18 0.00 43.15 5.01
5500 8640 1.099295 CACATCCATGATGCGCCACT 61.099 55.000 4.18 0.00 43.15 4.00
5501 8641 0.469494 ACATCCATGATGCGCCACTA 59.531 50.000 4.18 0.00 43.15 2.74
5502 8642 1.154197 CATCCATGATGCGCCACTAG 58.846 55.000 4.18 0.00 33.17 2.57
5503 8643 0.761187 ATCCATGATGCGCCACTAGT 59.239 50.000 4.18 0.00 0.00 2.57
5504 8644 1.408969 TCCATGATGCGCCACTAGTA 58.591 50.000 4.18 0.00 0.00 1.82
5505 8645 1.760029 TCCATGATGCGCCACTAGTAA 59.240 47.619 4.18 0.00 0.00 2.24
5506 8646 1.867233 CCATGATGCGCCACTAGTAAC 59.133 52.381 4.18 0.00 0.00 2.50
5507 8647 2.549926 CATGATGCGCCACTAGTAACA 58.450 47.619 4.18 0.00 0.00 2.41
5508 8648 2.753055 TGATGCGCCACTAGTAACAA 57.247 45.000 4.18 0.00 0.00 2.83
5509 8649 3.046968 TGATGCGCCACTAGTAACAAA 57.953 42.857 4.18 0.00 0.00 2.83
5510 8650 3.403968 TGATGCGCCACTAGTAACAAAA 58.596 40.909 4.18 0.00 0.00 2.44
5511 8651 4.006989 TGATGCGCCACTAGTAACAAAAT 58.993 39.130 4.18 0.00 0.00 1.82
5512 8652 4.457603 TGATGCGCCACTAGTAACAAAATT 59.542 37.500 4.18 0.00 0.00 1.82
5513 8653 4.839668 TGCGCCACTAGTAACAAAATTT 57.160 36.364 4.18 0.00 0.00 1.82
5514 8654 5.189659 TGCGCCACTAGTAACAAAATTTT 57.810 34.783 4.18 0.00 0.00 1.82
5515 8655 5.593010 TGCGCCACTAGTAACAAAATTTTT 58.407 33.333 4.18 0.00 0.00 1.94
5980 9289 4.751060 ACTTTTGCATACGAACTCGGATA 58.249 39.130 3.88 0.00 41.75 2.59
6058 9375 7.008021 ACTAGGGAACTCCGTTAAACATTTA 57.992 36.000 0.00 0.00 43.67 1.40
6121 9441 6.544197 GGCTTTTAAGATCTAGAGGGGAAAAG 59.456 42.308 18.98 18.98 36.30 2.27
6274 9637 7.977904 TCATCATACTCATGAACATGAACAAC 58.022 34.615 18.05 0.00 46.10 3.32
6279 9642 2.811431 TCATGAACATGAACAACGTCCC 59.189 45.455 14.00 0.00 44.14 4.46
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.622962 GGAAAAACCCGTGCTCCCG 61.623 63.158 0.00 0.00 0.00 5.14
19 20 1.081442 GGCGTGCCTTTTCGGAAAG 60.081 57.895 9.39 9.39 41.56 2.62
20 21 0.250381 TAGGCGTGCCTTTTCGGAAA 60.250 50.000 20.08 0.00 45.70 3.13
21 22 0.035820 ATAGGCGTGCCTTTTCGGAA 60.036 50.000 20.08 0.00 45.70 4.30
22 23 0.742990 CATAGGCGTGCCTTTTCGGA 60.743 55.000 20.08 0.00 45.70 4.55
23 24 1.721487 CATAGGCGTGCCTTTTCGG 59.279 57.895 20.08 0.88 45.70 4.30
24 25 1.062525 GCATAGGCGTGCCTTTTCG 59.937 57.895 20.08 6.46 45.70 3.46
31 32 1.884926 GTGAGAGGCATAGGCGTGC 60.885 63.158 0.00 9.05 44.31 5.34
32 33 1.589993 CGTGAGAGGCATAGGCGTG 60.590 63.158 0.00 0.00 42.47 5.34
33 34 1.320344 TTCGTGAGAGGCATAGGCGT 61.320 55.000 0.00 0.00 43.69 5.68
34 35 0.179111 TTTCGTGAGAGGCATAGGCG 60.179 55.000 0.00 0.00 43.69 5.52
35 36 2.139118 GATTTCGTGAGAGGCATAGGC 58.861 52.381 0.00 0.00 43.69 3.93
36 37 3.126831 GTGATTTCGTGAGAGGCATAGG 58.873 50.000 0.00 0.00 43.69 2.57
37 38 3.785486 TGTGATTTCGTGAGAGGCATAG 58.215 45.455 0.00 0.00 43.69 2.23
38 39 3.785486 CTGTGATTTCGTGAGAGGCATA 58.215 45.455 0.00 0.00 43.69 3.14
39 40 2.625737 CTGTGATTTCGTGAGAGGCAT 58.374 47.619 0.00 0.00 43.69 4.40
40 41 1.941209 GCTGTGATTTCGTGAGAGGCA 60.941 52.381 0.00 0.00 43.69 4.75
41 42 0.723981 GCTGTGATTTCGTGAGAGGC 59.276 55.000 0.00 0.00 43.69 4.70
42 43 1.363744 GGCTGTGATTTCGTGAGAGG 58.636 55.000 0.00 0.00 43.69 3.69
43 44 0.994995 CGGCTGTGATTTCGTGAGAG 59.005 55.000 0.00 0.00 43.69 3.20
44 45 0.317160 ACGGCTGTGATTTCGTGAGA 59.683 50.000 0.00 0.00 34.40 3.27
45 46 2.827604 ACGGCTGTGATTTCGTGAG 58.172 52.632 0.00 0.00 34.40 3.51
65 66 0.110192 GTTTTTGCTTCCGCGAGAGG 60.110 55.000 8.23 4.88 39.65 3.69
66 67 0.451135 CGTTTTTGCTTCCGCGAGAG 60.451 55.000 8.23 5.93 39.65 3.20
67 68 1.155424 ACGTTTTTGCTTCCGCGAGA 61.155 50.000 8.23 0.00 39.65 4.04
68 69 0.991770 CACGTTTTTGCTTCCGCGAG 60.992 55.000 8.23 0.00 39.65 5.03
69 70 1.010574 CACGTTTTTGCTTCCGCGA 60.011 52.632 8.23 0.00 39.65 5.87
70 71 2.635305 GCACGTTTTTGCTTCCGCG 61.635 57.895 0.00 0.00 39.59 6.46
71 72 2.300066 GGCACGTTTTTGCTTCCGC 61.300 57.895 0.00 0.00 42.56 5.54
72 73 0.660300 GAGGCACGTTTTTGCTTCCG 60.660 55.000 0.00 0.00 41.54 4.30
73 74 0.668535 AGAGGCACGTTTTTGCTTCC 59.331 50.000 4.54 0.00 46.96 3.46
74 75 1.333619 TGAGAGGCACGTTTTTGCTTC 59.666 47.619 0.28 0.28 46.31 3.86
75 76 1.065551 GTGAGAGGCACGTTTTTGCTT 59.934 47.619 0.00 0.00 42.56 3.91
76 77 0.663153 GTGAGAGGCACGTTTTTGCT 59.337 50.000 0.00 0.00 42.56 3.91
77 78 3.164028 GTGAGAGGCACGTTTTTGC 57.836 52.632 0.00 0.00 42.18 3.68
86 87 3.136443 TCTTTTTCCTTCTGTGAGAGGCA 59.864 43.478 0.00 0.00 0.00 4.75
87 88 3.500299 GTCTTTTTCCTTCTGTGAGAGGC 59.500 47.826 0.00 0.00 0.00 4.70
88 89 4.068599 GGTCTTTTTCCTTCTGTGAGAGG 58.931 47.826 0.00 0.00 0.00 3.69
89 90 3.743396 CGGTCTTTTTCCTTCTGTGAGAG 59.257 47.826 0.00 0.00 0.00 3.20
90 91 3.494398 CCGGTCTTTTTCCTTCTGTGAGA 60.494 47.826 0.00 0.00 0.00 3.27
91 92 2.808543 CCGGTCTTTTTCCTTCTGTGAG 59.191 50.000 0.00 0.00 0.00 3.51
92 93 2.171870 ACCGGTCTTTTTCCTTCTGTGA 59.828 45.455 0.00 0.00 0.00 3.58
93 94 2.290641 CACCGGTCTTTTTCCTTCTGTG 59.709 50.000 2.59 0.00 0.00 3.66
94 95 2.171870 TCACCGGTCTTTTTCCTTCTGT 59.828 45.455 2.59 0.00 0.00 3.41
95 96 2.846193 TCACCGGTCTTTTTCCTTCTG 58.154 47.619 2.59 0.00 0.00 3.02
96 97 3.570912 TTCACCGGTCTTTTTCCTTCT 57.429 42.857 2.59 0.00 0.00 2.85
97 98 4.357142 GTTTTCACCGGTCTTTTTCCTTC 58.643 43.478 2.59 0.00 0.00 3.46
98 99 3.131577 GGTTTTCACCGGTCTTTTTCCTT 59.868 43.478 2.59 0.00 31.60 3.36
99 100 2.691526 GGTTTTCACCGGTCTTTTTCCT 59.308 45.455 2.59 0.00 31.60 3.36
100 101 3.088194 GGTTTTCACCGGTCTTTTTCC 57.912 47.619 2.59 0.00 31.60 3.13
111 112 2.095384 GTGACGTTTCGGTTTTCACC 57.905 50.000 0.00 0.00 40.16 4.02
112 113 1.268184 GGGTGACGTTTCGGTTTTCAC 60.268 52.381 0.00 0.00 36.63 3.18
113 114 1.015868 GGGTGACGTTTCGGTTTTCA 58.984 50.000 0.00 0.00 0.00 2.69
114 115 1.003223 CTGGGTGACGTTTCGGTTTTC 60.003 52.381 0.00 0.00 0.00 2.29
115 116 1.018910 CTGGGTGACGTTTCGGTTTT 58.981 50.000 0.00 0.00 0.00 2.43
116 117 0.178533 TCTGGGTGACGTTTCGGTTT 59.821 50.000 0.00 0.00 0.00 3.27
117 118 0.178533 TTCTGGGTGACGTTTCGGTT 59.821 50.000 0.00 0.00 0.00 4.44
118 119 0.178533 TTTCTGGGTGACGTTTCGGT 59.821 50.000 0.00 0.00 0.00 4.69
119 120 1.301423 TTTTCTGGGTGACGTTTCGG 58.699 50.000 0.00 0.00 0.00 4.30
136 137 8.923683 TGTTTTCGACTTTTTAAACGGATTTTT 58.076 25.926 4.27 0.00 34.16 1.94
137 138 8.374728 GTGTTTTCGACTTTTTAAACGGATTTT 58.625 29.630 4.27 0.00 34.16 1.82
138 139 7.253387 CGTGTTTTCGACTTTTTAAACGGATTT 60.253 33.333 4.27 0.00 34.16 2.17
139 140 6.195060 CGTGTTTTCGACTTTTTAAACGGATT 59.805 34.615 4.27 0.00 34.16 3.01
140 141 5.678047 CGTGTTTTCGACTTTTTAAACGGAT 59.322 36.000 4.27 0.00 34.16 4.18
141 142 5.020758 CGTGTTTTCGACTTTTTAAACGGA 58.979 37.500 4.27 0.00 34.16 4.69
142 143 4.787591 ACGTGTTTTCGACTTTTTAAACGG 59.212 37.500 0.00 2.16 34.16 4.44
143 144 5.686910 CACGTGTTTTCGACTTTTTAAACG 58.313 37.500 7.58 0.00 34.16 3.60
144 145 5.465966 GCACGTGTTTTCGACTTTTTAAAC 58.534 37.500 18.38 2.00 34.70 2.01
145 146 4.260194 CGCACGTGTTTTCGACTTTTTAAA 59.740 37.500 18.38 0.00 34.70 1.52
146 147 3.779758 CGCACGTGTTTTCGACTTTTTAA 59.220 39.130 18.38 0.00 34.70 1.52
147 148 3.343990 CGCACGTGTTTTCGACTTTTTA 58.656 40.909 18.38 0.00 34.70 1.52
148 149 2.170770 CGCACGTGTTTTCGACTTTTT 58.829 42.857 18.38 0.00 34.70 1.94
149 150 1.530236 CCGCACGTGTTTTCGACTTTT 60.530 47.619 18.38 0.00 34.70 2.27
150 151 0.027063 CCGCACGTGTTTTCGACTTT 59.973 50.000 18.38 0.00 34.70 2.66
151 152 0.806884 TCCGCACGTGTTTTCGACTT 60.807 50.000 18.38 0.00 34.70 3.01
152 153 0.806884 TTCCGCACGTGTTTTCGACT 60.807 50.000 18.38 0.00 34.70 4.18
153 154 0.026544 TTTCCGCACGTGTTTTCGAC 59.973 50.000 18.38 0.00 34.70 4.20
154 155 0.725686 TTTTCCGCACGTGTTTTCGA 59.274 45.000 18.38 2.89 34.70 3.71
155 156 1.749153 ATTTTCCGCACGTGTTTTCG 58.251 45.000 18.38 11.76 0.00 3.46
156 157 5.623174 TTTTATTTTCCGCACGTGTTTTC 57.377 34.783 18.38 0.00 0.00 2.29
176 177 5.739070 GCTCCCTTCGGATTTTGAACTTTTT 60.739 40.000 0.00 0.00 37.60 1.94
177 178 4.262036 GCTCCCTTCGGATTTTGAACTTTT 60.262 41.667 0.00 0.00 37.60 2.27
178 179 3.255888 GCTCCCTTCGGATTTTGAACTTT 59.744 43.478 0.00 0.00 37.60 2.66
179 180 2.820197 GCTCCCTTCGGATTTTGAACTT 59.180 45.455 0.00 0.00 37.60 2.66
180 181 2.437413 GCTCCCTTCGGATTTTGAACT 58.563 47.619 0.00 0.00 37.60 3.01
181 182 1.130561 CGCTCCCTTCGGATTTTGAAC 59.869 52.381 0.00 0.00 37.60 3.18
182 183 1.448985 CGCTCCCTTCGGATTTTGAA 58.551 50.000 0.00 0.00 37.60 2.69
183 184 1.024579 GCGCTCCCTTCGGATTTTGA 61.025 55.000 0.00 0.00 37.60 2.69
184 185 1.429423 GCGCTCCCTTCGGATTTTG 59.571 57.895 0.00 0.00 37.60 2.44
185 186 1.749258 GGCGCTCCCTTCGGATTTT 60.749 57.895 7.64 0.00 37.60 1.82
186 187 2.124695 GGCGCTCCCTTCGGATTT 60.125 61.111 7.64 0.00 37.60 2.17
205 206 4.702081 GACCACGTGTCGCGCTCT 62.702 66.667 15.65 0.00 46.11 4.09
217 218 1.516603 GCTCTTAGCCGTCGACCAC 60.517 63.158 10.58 1.74 34.48 4.16
218 219 2.882876 GCTCTTAGCCGTCGACCA 59.117 61.111 10.58 0.00 34.48 4.02
219 220 2.278013 CGCTCTTAGCCGTCGACC 60.278 66.667 10.58 0.00 38.18 4.79
220 221 2.950194 GCGCTCTTAGCCGTCGAC 60.950 66.667 5.18 5.18 38.18 4.20
221 222 4.531912 CGCGCTCTTAGCCGTCGA 62.532 66.667 5.56 0.00 38.18 4.20
227 228 1.082117 TTACTTGGCGCGCTCTTAGC 61.082 55.000 32.29 13.79 38.02 3.09
228 229 0.645868 GTTACTTGGCGCGCTCTTAG 59.354 55.000 32.29 22.77 0.00 2.18
229 230 1.074319 CGTTACTTGGCGCGCTCTTA 61.074 55.000 32.29 14.14 0.00 2.10
230 231 2.380410 CGTTACTTGGCGCGCTCTT 61.380 57.895 32.29 15.20 0.00 2.85
231 232 2.809601 CGTTACTTGGCGCGCTCT 60.810 61.111 32.29 13.00 0.00 4.09
232 233 4.500568 GCGTTACTTGGCGCGCTC 62.501 66.667 32.29 21.22 45.48 5.03
237 238 3.063452 ACAATGATAAGCGTTACTTGGCG 59.937 43.478 0.00 0.00 39.58 5.69
238 239 4.094294 TCACAATGATAAGCGTTACTTGGC 59.906 41.667 0.00 0.00 39.58 4.52
239 240 5.220662 CCTCACAATGATAAGCGTTACTTGG 60.221 44.000 0.00 0.00 39.58 3.61
240 241 5.727791 GCCTCACAATGATAAGCGTTACTTG 60.728 44.000 0.00 0.00 39.58 3.16
241 242 4.332819 GCCTCACAATGATAAGCGTTACTT 59.667 41.667 0.00 0.00 42.76 2.24
242 243 3.871594 GCCTCACAATGATAAGCGTTACT 59.128 43.478 0.00 0.00 0.00 2.24
243 244 3.871594 AGCCTCACAATGATAAGCGTTAC 59.128 43.478 0.00 0.00 0.00 2.50
244 245 4.137116 AGCCTCACAATGATAAGCGTTA 57.863 40.909 0.00 0.00 0.00 3.18
245 246 2.991250 AGCCTCACAATGATAAGCGTT 58.009 42.857 0.00 0.00 0.00 4.84
246 247 2.698855 AGCCTCACAATGATAAGCGT 57.301 45.000 0.00 0.00 0.00 5.07
247 248 3.374988 TGAAAGCCTCACAATGATAAGCG 59.625 43.478 0.00 0.00 0.00 4.68
248 249 4.970662 TGAAAGCCTCACAATGATAAGC 57.029 40.909 0.00 0.00 0.00 3.09
249 250 7.149569 TCTTTGAAAGCCTCACAATGATAAG 57.850 36.000 0.00 0.00 32.21 1.73
250 251 7.523293 TTCTTTGAAAGCCTCACAATGATAA 57.477 32.000 0.00 0.00 32.21 1.75
251 252 6.349611 GCTTCTTTGAAAGCCTCACAATGATA 60.350 38.462 0.00 0.00 44.75 2.15
252 253 5.566230 GCTTCTTTGAAAGCCTCACAATGAT 60.566 40.000 0.00 0.00 44.75 2.45
253 254 4.261741 GCTTCTTTGAAAGCCTCACAATGA 60.262 41.667 0.00 0.00 44.75 2.57
254 255 3.985925 GCTTCTTTGAAAGCCTCACAATG 59.014 43.478 0.00 0.00 44.75 2.82
255 256 4.248691 GCTTCTTTGAAAGCCTCACAAT 57.751 40.909 0.00 0.00 44.75 2.71
256 257 3.715628 GCTTCTTTGAAAGCCTCACAA 57.284 42.857 0.00 0.00 44.75 3.33
263 264 0.235926 ACGAGCGCTTCTTTGAAAGC 59.764 50.000 13.26 0.00 46.54 3.51
264 265 1.526887 TGACGAGCGCTTCTTTGAAAG 59.473 47.619 13.26 0.00 0.00 2.62
265 266 1.577468 TGACGAGCGCTTCTTTGAAA 58.423 45.000 13.26 0.00 0.00 2.69
266 267 1.577468 TTGACGAGCGCTTCTTTGAA 58.423 45.000 13.26 0.00 0.00 2.69
267 268 1.795768 ATTGACGAGCGCTTCTTTGA 58.204 45.000 13.26 0.00 0.00 2.69
268 269 2.601481 AATTGACGAGCGCTTCTTTG 57.399 45.000 13.26 1.88 0.00 2.77
269 270 3.326747 ACTAATTGACGAGCGCTTCTTT 58.673 40.909 13.26 7.18 0.00 2.52
270 271 2.960819 ACTAATTGACGAGCGCTTCTT 58.039 42.857 13.26 0.00 0.00 2.52
271 272 2.656560 ACTAATTGACGAGCGCTTCT 57.343 45.000 13.26 0.00 0.00 2.85
272 273 2.784665 GCAACTAATTGACGAGCGCTTC 60.785 50.000 13.26 6.79 38.15 3.86
273 274 1.128692 GCAACTAATTGACGAGCGCTT 59.871 47.619 13.26 0.00 38.15 4.68
274 275 0.721718 GCAACTAATTGACGAGCGCT 59.278 50.000 11.27 11.27 38.15 5.92
275 276 0.721718 AGCAACTAATTGACGAGCGC 59.278 50.000 0.00 0.00 38.15 5.92
276 277 1.324736 GGAGCAACTAATTGACGAGCG 59.675 52.381 0.00 0.00 38.15 5.03
277 278 1.666189 GGGAGCAACTAATTGACGAGC 59.334 52.381 0.00 0.00 38.15 5.03
278 279 2.673368 GTGGGAGCAACTAATTGACGAG 59.327 50.000 0.00 0.00 38.15 4.18
279 280 2.037902 TGTGGGAGCAACTAATTGACGA 59.962 45.455 0.00 0.00 38.15 4.20
280 281 2.159627 GTGTGGGAGCAACTAATTGACG 59.840 50.000 0.00 0.00 38.15 4.35
281 282 3.146066 TGTGTGGGAGCAACTAATTGAC 58.854 45.455 0.00 0.00 38.15 3.18
282 283 3.500448 TGTGTGGGAGCAACTAATTGA 57.500 42.857 0.00 0.00 38.15 2.57
283 284 4.789012 ATTGTGTGGGAGCAACTAATTG 57.211 40.909 0.00 0.00 38.99 2.32
284 285 5.806654 AAATTGTGTGGGAGCAACTAATT 57.193 34.783 0.00 0.00 0.00 1.40
285 286 5.539955 AGAAAATTGTGTGGGAGCAACTAAT 59.460 36.000 0.00 0.00 0.00 1.73
286 287 4.892934 AGAAAATTGTGTGGGAGCAACTAA 59.107 37.500 0.00 0.00 0.00 2.24
287 288 4.469657 AGAAAATTGTGTGGGAGCAACTA 58.530 39.130 0.00 0.00 0.00 2.24
288 289 3.299503 AGAAAATTGTGTGGGAGCAACT 58.700 40.909 0.00 0.00 0.00 3.16
289 290 3.733443 AGAAAATTGTGTGGGAGCAAC 57.267 42.857 0.00 0.00 0.00 4.17
290 291 4.405358 AGAAAGAAAATTGTGTGGGAGCAA 59.595 37.500 0.00 0.00 0.00 3.91
291 292 3.960102 AGAAAGAAAATTGTGTGGGAGCA 59.040 39.130 0.00 0.00 0.00 4.26
292 293 4.202151 ACAGAAAGAAAATTGTGTGGGAGC 60.202 41.667 0.00 0.00 35.69 4.70
293 294 5.520376 ACAGAAAGAAAATTGTGTGGGAG 57.480 39.130 0.00 0.00 35.69 4.30
294 295 7.595819 ATTACAGAAAGAAAATTGTGTGGGA 57.404 32.000 0.68 0.00 37.38 4.37
295 296 7.925483 TGAATTACAGAAAGAAAATTGTGTGGG 59.075 33.333 0.68 0.00 37.38 4.61
296 297 8.870160 TGAATTACAGAAAGAAAATTGTGTGG 57.130 30.769 0.68 0.00 37.38 4.17
307 308 9.778741 ACAGAAGTACAATGAATTACAGAAAGA 57.221 29.630 0.00 0.00 0.00 2.52
316 317 9.013229 TGCAATTCTACAGAAGTACAATGAATT 57.987 29.630 0.00 0.00 37.48 2.17
317 318 8.565896 TGCAATTCTACAGAAGTACAATGAAT 57.434 30.769 0.00 0.00 37.48 2.57
318 319 7.977789 TGCAATTCTACAGAAGTACAATGAA 57.022 32.000 0.00 0.00 37.48 2.57
319 320 8.453320 CAATGCAATTCTACAGAAGTACAATGA 58.547 33.333 2.87 0.00 31.56 2.57
320 321 7.219535 GCAATGCAATTCTACAGAAGTACAATG 59.780 37.037 0.00 4.20 37.48 2.82
321 322 7.094248 TGCAATGCAATTCTACAGAAGTACAAT 60.094 33.333 5.01 0.00 34.76 2.71
322 323 6.206438 TGCAATGCAATTCTACAGAAGTACAA 59.794 34.615 5.01 0.00 34.76 2.41
323 324 5.704978 TGCAATGCAATTCTACAGAAGTACA 59.295 36.000 5.01 0.00 34.76 2.90
324 325 6.182039 TGCAATGCAATTCTACAGAAGTAC 57.818 37.500 5.01 0.00 34.76 2.73
325 326 6.816134 TTGCAATGCAATTCTACAGAAGTA 57.184 33.333 17.55 0.00 43.99 2.24
326 327 5.710513 TTGCAATGCAATTCTACAGAAGT 57.289 34.783 17.55 0.00 43.99 3.01
385 386 3.388676 TCGAACTCCACCTGTCCTAAAAA 59.611 43.478 0.00 0.00 0.00 1.94
386 387 2.967201 TCGAACTCCACCTGTCCTAAAA 59.033 45.455 0.00 0.00 0.00 1.52
387 388 2.600790 TCGAACTCCACCTGTCCTAAA 58.399 47.619 0.00 0.00 0.00 1.85
388 389 2.297698 TCGAACTCCACCTGTCCTAA 57.702 50.000 0.00 0.00 0.00 2.69
389 390 2.168496 CTTCGAACTCCACCTGTCCTA 58.832 52.381 0.00 0.00 0.00 2.94
390 391 0.969894 CTTCGAACTCCACCTGTCCT 59.030 55.000 0.00 0.00 0.00 3.85
391 392 0.670854 GCTTCGAACTCCACCTGTCC 60.671 60.000 0.00 0.00 0.00 4.02
392 393 0.670854 GGCTTCGAACTCCACCTGTC 60.671 60.000 0.00 0.00 0.00 3.51
393 394 1.122019 AGGCTTCGAACTCCACCTGT 61.122 55.000 12.65 0.00 0.00 4.00
394 395 0.671781 CAGGCTTCGAACTCCACCTG 60.672 60.000 12.65 11.42 38.81 4.00
395 396 1.122019 ACAGGCTTCGAACTCCACCT 61.122 55.000 12.65 4.36 0.00 4.00
396 397 0.670854 GACAGGCTTCGAACTCCACC 60.671 60.000 12.65 2.38 0.00 4.61
397 398 0.670854 GGACAGGCTTCGAACTCCAC 60.671 60.000 12.65 5.31 0.00 4.02
398 399 0.832135 AGGACAGGCTTCGAACTCCA 60.832 55.000 12.65 0.00 0.00 3.86
399 400 0.390472 CAGGACAGGCTTCGAACTCC 60.390 60.000 0.00 0.00 0.00 3.85
400 401 0.390472 CCAGGACAGGCTTCGAACTC 60.390 60.000 0.00 0.00 0.00 3.01
401 402 1.674057 CCAGGACAGGCTTCGAACT 59.326 57.895 0.00 0.00 0.00 3.01
402 403 4.285851 CCAGGACAGGCTTCGAAC 57.714 61.111 0.00 0.00 0.00 3.95
411 412 4.729918 GTGGGCTGGCCAGGACAG 62.730 72.222 33.46 19.53 42.51 3.51
413 414 2.210144 TATTGTGGGCTGGCCAGGAC 62.210 60.000 33.46 17.96 37.98 3.85
414 415 1.288508 ATATTGTGGGCTGGCCAGGA 61.289 55.000 33.46 15.19 37.98 3.86
415 416 1.111116 CATATTGTGGGCTGGCCAGG 61.111 60.000 33.46 15.81 37.98 4.45
416 417 0.396139 ACATATTGTGGGCTGGCCAG 60.396 55.000 29.34 29.34 37.98 4.85
417 418 0.040942 AACATATTGTGGGCTGGCCA 59.959 50.000 20.19 20.19 37.98 5.36
418 419 0.461135 CAACATATTGTGGGCTGGCC 59.539 55.000 14.23 14.23 0.00 5.36
419 420 5.038490 GAGACAACATATTGTGGGCTGGC 62.038 52.174 0.00 0.00 40.53 4.85
420 421 2.684881 GAGACAACATATTGTGGGCTGG 59.315 50.000 0.00 0.00 40.53 4.85
421 422 2.684881 GGAGACAACATATTGTGGGCTG 59.315 50.000 0.00 0.00 40.53 4.85
422 423 2.308570 TGGAGACAACATATTGTGGGCT 59.691 45.455 0.00 0.00 43.98 5.19
435 436 1.346479 TTTGACCCGGGTGGAGACAA 61.346 55.000 36.01 25.40 46.06 3.18
436 437 1.346479 TTTTGACCCGGGTGGAGACA 61.346 55.000 36.01 20.46 37.49 3.41
437 438 0.179012 TTTTTGACCCGGGTGGAGAC 60.179 55.000 36.01 17.59 37.49 3.36
438 439 2.232622 TTTTTGACCCGGGTGGAGA 58.767 52.632 36.01 11.78 37.49 3.71
439 440 4.911901 TTTTTGACCCGGGTGGAG 57.088 55.556 36.01 0.59 37.49 3.86
453 454 5.988310 TGCATCTGAATGGTCTGATTTTT 57.012 34.783 0.00 0.00 39.64 1.94
454 455 5.068723 GGATGCATCTGAATGGTCTGATTTT 59.931 40.000 25.28 0.00 39.64 1.82
455 456 4.583489 GGATGCATCTGAATGGTCTGATTT 59.417 41.667 25.28 0.00 39.64 2.17
456 457 4.142790 GGATGCATCTGAATGGTCTGATT 58.857 43.478 25.28 0.00 39.64 2.57
457 458 3.137728 TGGATGCATCTGAATGGTCTGAT 59.862 43.478 25.28 0.00 41.65 2.90
458 459 2.506644 TGGATGCATCTGAATGGTCTGA 59.493 45.455 25.28 0.00 36.31 3.27
459 460 2.927028 TGGATGCATCTGAATGGTCTG 58.073 47.619 25.28 0.00 33.19 3.51
460 461 3.657398 TTGGATGCATCTGAATGGTCT 57.343 42.857 25.28 0.00 33.19 3.85
461 462 3.005472 CCATTGGATGCATCTGAATGGTC 59.995 47.826 34.85 18.97 39.40 4.02
462 463 2.963101 CCATTGGATGCATCTGAATGGT 59.037 45.455 34.85 15.08 39.40 3.55
463 464 3.005472 GTCCATTGGATGCATCTGAATGG 59.995 47.826 36.04 36.04 42.17 3.16
464 465 3.005472 GGTCCATTGGATGCATCTGAATG 59.995 47.826 27.78 27.78 32.73 2.67
465 466 3.228453 GGTCCATTGGATGCATCTGAAT 58.772 45.455 25.28 19.33 32.73 2.57
466 467 2.025131 TGGTCCATTGGATGCATCTGAA 60.025 45.455 25.28 18.06 32.73 3.02
467 468 1.565288 TGGTCCATTGGATGCATCTGA 59.435 47.619 25.28 14.70 32.73 3.27
468 469 2.061509 TGGTCCATTGGATGCATCTG 57.938 50.000 25.28 15.83 32.73 2.90
469 470 2.024655 AGTTGGTCCATTGGATGCATCT 60.025 45.455 25.28 3.74 32.73 2.90
470 471 2.381911 AGTTGGTCCATTGGATGCATC 58.618 47.619 18.81 18.81 32.73 3.91
471 472 2.537633 AGTTGGTCCATTGGATGCAT 57.462 45.000 9.01 0.00 32.73 3.96
472 473 2.357050 CCTAGTTGGTCCATTGGATGCA 60.357 50.000 9.01 0.00 32.73 3.96
473 474 2.301346 CCTAGTTGGTCCATTGGATGC 58.699 52.381 9.01 0.00 32.73 3.91
474 475 2.301346 GCCTAGTTGGTCCATTGGATG 58.699 52.381 9.01 0.00 38.35 3.51
475 476 1.215423 GGCCTAGTTGGTCCATTGGAT 59.785 52.381 9.01 0.00 38.35 3.41
476 477 0.623723 GGCCTAGTTGGTCCATTGGA 59.376 55.000 0.00 0.00 38.35 3.53
477 478 0.331278 TGGCCTAGTTGGTCCATTGG 59.669 55.000 3.32 0.00 40.46 3.16
478 479 2.214376 TTGGCCTAGTTGGTCCATTG 57.786 50.000 3.32 0.00 40.46 2.82
479 480 2.897326 GTTTTGGCCTAGTTGGTCCATT 59.103 45.455 3.32 0.00 40.46 3.16
480 481 2.110011 AGTTTTGGCCTAGTTGGTCCAT 59.890 45.455 3.32 0.00 40.46 3.41
481 482 1.497286 AGTTTTGGCCTAGTTGGTCCA 59.503 47.619 3.32 3.39 40.46 4.02
482 483 2.287977 AGTTTTGGCCTAGTTGGTCC 57.712 50.000 3.32 0.00 40.46 4.46
483 484 3.889538 AGAAAGTTTTGGCCTAGTTGGTC 59.110 43.478 3.32 0.00 41.87 4.02
484 485 3.910989 AGAAAGTTTTGGCCTAGTTGGT 58.089 40.909 3.32 0.00 38.35 3.67
485 486 5.946377 AGATAGAAAGTTTTGGCCTAGTTGG 59.054 40.000 3.32 0.00 39.35 3.77
486 487 7.391833 AGAAGATAGAAAGTTTTGGCCTAGTTG 59.608 37.037 3.32 0.00 0.00 3.16
487 488 7.462590 AGAAGATAGAAAGTTTTGGCCTAGTT 58.537 34.615 3.32 0.00 0.00 2.24
488 489 7.021998 AGAAGATAGAAAGTTTTGGCCTAGT 57.978 36.000 3.32 0.00 0.00 2.57
489 490 8.478877 TCTAGAAGATAGAAAGTTTTGGCCTAG 58.521 37.037 3.32 0.00 0.00 3.02
490 491 8.375493 TCTAGAAGATAGAAAGTTTTGGCCTA 57.625 34.615 3.32 0.00 0.00 3.93
491 492 7.259088 TCTAGAAGATAGAAAGTTTTGGCCT 57.741 36.000 3.32 0.00 0.00 5.19
492 493 7.148222 GGTTCTAGAAGATAGAAAGTTTTGGCC 60.148 40.741 5.12 0.00 35.58 5.36
493 494 7.413109 CGGTTCTAGAAGATAGAAAGTTTTGGC 60.413 40.741 5.12 0.00 35.58 4.52
494 495 7.064728 CCGGTTCTAGAAGATAGAAAGTTTTGG 59.935 40.741 5.12 0.00 35.58 3.28
495 496 7.064728 CCCGGTTCTAGAAGATAGAAAGTTTTG 59.935 40.741 5.12 0.00 35.58 2.44
496 497 7.104290 CCCGGTTCTAGAAGATAGAAAGTTTT 58.896 38.462 5.12 0.00 35.58 2.43
497 498 6.641474 CCCGGTTCTAGAAGATAGAAAGTTT 58.359 40.000 5.12 0.00 35.58 2.66
498 499 5.395435 GCCCGGTTCTAGAAGATAGAAAGTT 60.395 44.000 5.12 0.00 35.58 2.66
499 500 4.099727 GCCCGGTTCTAGAAGATAGAAAGT 59.900 45.833 5.12 0.00 35.58 2.66
500 501 4.623002 GCCCGGTTCTAGAAGATAGAAAG 58.377 47.826 5.12 0.00 35.58 2.62
501 502 3.067742 CGCCCGGTTCTAGAAGATAGAAA 59.932 47.826 5.12 0.00 35.58 2.52
502 503 2.621998 CGCCCGGTTCTAGAAGATAGAA 59.378 50.000 5.12 0.00 0.00 2.10
503 504 2.228059 CGCCCGGTTCTAGAAGATAGA 58.772 52.381 5.12 0.00 0.00 1.98
504 505 1.269998 CCGCCCGGTTCTAGAAGATAG 59.730 57.143 5.12 0.00 0.00 2.08
505 506 1.325355 CCGCCCGGTTCTAGAAGATA 58.675 55.000 5.12 0.00 0.00 1.98
506 507 2.029307 GCCGCCCGGTTCTAGAAGAT 62.029 60.000 5.12 0.00 37.65 2.40
507 508 2.718073 GCCGCCCGGTTCTAGAAGA 61.718 63.158 5.12 0.00 37.65 2.87
508 509 2.202892 GCCGCCCGGTTCTAGAAG 60.203 66.667 5.12 0.00 37.65 2.85
509 510 3.777910 GGCCGCCCGGTTCTAGAA 61.778 66.667 8.66 0.00 37.65 2.10
510 511 4.772231 AGGCCGCCCGGTTCTAGA 62.772 66.667 5.55 0.00 37.65 2.43
511 512 4.222847 GAGGCCGCCCGGTTCTAG 62.223 72.222 5.55 0.00 37.65 2.43
512 513 2.651841 ATAGAGGCCGCCCGGTTCTA 62.652 60.000 18.38 18.38 37.69 2.10
513 514 4.772231 TAGAGGCCGCCCGGTTCT 62.772 66.667 5.55 16.10 37.65 3.01
514 515 3.516866 GATAGAGGCCGCCCGGTTC 62.517 68.421 5.55 6.88 37.65 3.62
515 516 3.547513 GATAGAGGCCGCCCGGTT 61.548 66.667 5.55 0.00 37.65 4.44
516 517 4.853142 TGATAGAGGCCGCCCGGT 62.853 66.667 5.55 0.00 37.65 5.28
517 518 3.546543 TTGATAGAGGCCGCCCGG 61.547 66.667 5.55 1.59 35.76 5.73
518 519 2.280186 GTTGATAGAGGCCGCCCG 60.280 66.667 5.55 0.00 35.76 6.13
519 520 1.227674 CAGTTGATAGAGGCCGCCC 60.228 63.158 5.55 0.00 0.00 6.13
520 521 0.530870 GTCAGTTGATAGAGGCCGCC 60.531 60.000 1.49 0.00 0.00 6.13
521 522 0.530870 GGTCAGTTGATAGAGGCCGC 60.531 60.000 0.00 0.00 0.00 6.53
522 523 0.249073 CGGTCAGTTGATAGAGGCCG 60.249 60.000 0.00 0.00 0.00 6.13
523 524 0.824759 ACGGTCAGTTGATAGAGGCC 59.175 55.000 0.00 0.00 0.00 5.19
524 525 1.202428 GGACGGTCAGTTGATAGAGGC 60.202 57.143 10.76 0.00 0.00 4.70
525 526 2.099921 CAGGACGGTCAGTTGATAGAGG 59.900 54.545 10.76 0.00 0.00 3.69
526 527 2.755655 ACAGGACGGTCAGTTGATAGAG 59.244 50.000 10.76 0.00 0.00 2.43
527 528 2.753452 GACAGGACGGTCAGTTGATAGA 59.247 50.000 10.76 0.00 37.73 1.98
528 529 2.492088 TGACAGGACGGTCAGTTGATAG 59.508 50.000 10.76 0.00 42.56 2.08
529 530 2.521126 TGACAGGACGGTCAGTTGATA 58.479 47.619 10.76 0.00 42.56 2.15
530 531 1.338107 TGACAGGACGGTCAGTTGAT 58.662 50.000 10.76 0.00 42.56 2.57
531 532 2.815384 TGACAGGACGGTCAGTTGA 58.185 52.632 10.76 0.00 42.56 3.18
536 537 0.467474 ACAGACTGACAGGACGGTCA 60.467 55.000 10.08 5.25 45.39 4.02
537 538 0.241481 GACAGACTGACAGGACGGTC 59.759 60.000 10.08 12.19 43.91 4.79
538 539 1.179814 GGACAGACTGACAGGACGGT 61.180 60.000 10.08 7.33 0.00 4.83
539 540 1.587054 GGACAGACTGACAGGACGG 59.413 63.158 10.08 4.20 0.00 4.79
540 541 0.896019 AGGGACAGACTGACAGGACG 60.896 60.000 10.08 0.00 0.00 4.79
541 542 0.892063 GAGGGACAGACTGACAGGAC 59.108 60.000 10.08 0.62 0.00 3.85
542 543 0.482887 TGAGGGACAGACTGACAGGA 59.517 55.000 10.08 0.00 0.00 3.86
543 544 1.001406 GTTGAGGGACAGACTGACAGG 59.999 57.143 10.08 0.00 0.00 4.00
544 545 1.336332 CGTTGAGGGACAGACTGACAG 60.336 57.143 10.08 0.00 0.00 3.51
545 546 0.673985 CGTTGAGGGACAGACTGACA 59.326 55.000 10.08 0.00 0.00 3.58
546 547 0.667792 GCGTTGAGGGACAGACTGAC 60.668 60.000 10.08 2.35 0.00 3.51
547 548 1.666011 GCGTTGAGGGACAGACTGA 59.334 57.895 10.08 0.00 0.00 3.41
548 549 1.374758 GGCGTTGAGGGACAGACTG 60.375 63.158 0.00 0.00 0.00 3.51
549 550 2.584391 GGGCGTTGAGGGACAGACT 61.584 63.158 0.00 0.00 0.00 3.24
550 551 2.047179 GGGCGTTGAGGGACAGAC 60.047 66.667 0.00 0.00 0.00 3.51
551 552 3.691342 CGGGCGTTGAGGGACAGA 61.691 66.667 0.00 0.00 0.00 3.41
572 573 2.580233 GGTAAAACCCTACGACGTGCG 61.580 57.143 11.56 0.00 38.03 5.34
573 574 1.070821 GGTAAAACCCTACGACGTGC 58.929 55.000 11.56 0.00 30.04 5.34
574 575 1.339711 CGGTAAAACCCTACGACGTG 58.660 55.000 11.56 0.43 33.75 4.49
575 576 0.243636 CCGGTAAAACCCTACGACGT 59.756 55.000 5.52 5.52 33.75 4.34
576 577 1.078201 GCCGGTAAAACCCTACGACG 61.078 60.000 1.90 0.00 33.75 5.12
577 578 0.740868 GGCCGGTAAAACCCTACGAC 60.741 60.000 1.90 0.00 33.75 4.34
578 579 1.596408 GGCCGGTAAAACCCTACGA 59.404 57.895 1.90 0.00 33.75 3.43
579 580 1.450134 GGGCCGGTAAAACCCTACG 60.450 63.158 1.90 0.00 40.75 3.51
580 581 1.450134 CGGGCCGGTAAAACCCTAC 60.450 63.158 20.56 0.00 41.86 3.18
581 582 2.988800 CGGGCCGGTAAAACCCTA 59.011 61.111 20.56 0.00 41.86 3.53
582 583 4.728110 GCGGGCCGGTAAAACCCT 62.728 66.667 29.48 0.00 41.86 4.34
584 585 4.728110 AGGCGGGCCGGTAAAACC 62.728 66.667 29.48 18.85 41.95 3.27
585 586 3.129502 GAGGCGGGCCGGTAAAAC 61.130 66.667 29.48 9.45 41.95 2.43
586 587 3.638316 TGAGGCGGGCCGGTAAAA 61.638 61.111 29.48 0.00 41.95 1.52
587 588 4.397832 GTGAGGCGGGCCGGTAAA 62.398 66.667 29.48 0.00 41.95 2.01
608 609 1.983119 ATATGGTGGAGGCCGGTGTG 61.983 60.000 1.90 0.00 0.00 3.82
609 610 0.399376 TATATGGTGGAGGCCGGTGT 60.399 55.000 1.90 0.00 0.00 4.16
610 611 0.984230 ATATATGGTGGAGGCCGGTG 59.016 55.000 1.90 0.00 0.00 4.94
611 612 1.276622 GATATATGGTGGAGGCCGGT 58.723 55.000 1.90 0.00 0.00 5.28
612 613 1.275666 TGATATATGGTGGAGGCCGG 58.724 55.000 0.00 0.00 0.00 6.13
613 614 3.055167 TCAATGATATATGGTGGAGGCCG 60.055 47.826 0.00 0.00 0.00 6.13
614 615 4.521146 CTCAATGATATATGGTGGAGGCC 58.479 47.826 0.00 0.00 0.00 5.19
615 616 3.944015 GCTCAATGATATATGGTGGAGGC 59.056 47.826 0.00 0.00 0.00 4.70
616 617 5.183969 CAGCTCAATGATATATGGTGGAGG 58.816 45.833 0.00 0.00 0.00 4.30
617 618 4.634883 GCAGCTCAATGATATATGGTGGAG 59.365 45.833 0.00 0.00 0.00 3.86
618 619 4.566278 GGCAGCTCAATGATATATGGTGGA 60.566 45.833 0.00 0.00 0.00 4.02
619 620 3.693085 GGCAGCTCAATGATATATGGTGG 59.307 47.826 0.00 0.00 0.00 4.61
620 621 4.586884 AGGCAGCTCAATGATATATGGTG 58.413 43.478 0.00 0.00 0.00 4.17
621 622 4.324099 GGAGGCAGCTCAATGATATATGGT 60.324 45.833 0.00 0.00 0.00 3.55
622 623 4.197750 GGAGGCAGCTCAATGATATATGG 58.802 47.826 0.00 0.00 0.00 2.74
623 624 4.634883 GTGGAGGCAGCTCAATGATATATG 59.365 45.833 0.00 0.00 0.00 1.78
624 625 4.287845 TGTGGAGGCAGCTCAATGATATAT 59.712 41.667 0.00 0.00 0.00 0.86
625 626 3.647590 TGTGGAGGCAGCTCAATGATATA 59.352 43.478 0.00 0.00 0.00 0.86
626 627 2.440627 TGTGGAGGCAGCTCAATGATAT 59.559 45.455 0.00 0.00 0.00 1.63
627 628 1.839354 TGTGGAGGCAGCTCAATGATA 59.161 47.619 0.00 0.00 0.00 2.15
628 629 0.622136 TGTGGAGGCAGCTCAATGAT 59.378 50.000 0.00 0.00 0.00 2.45
629 630 0.321919 GTGTGGAGGCAGCTCAATGA 60.322 55.000 0.00 0.00 0.00 2.57
630 631 0.607217 TGTGTGGAGGCAGCTCAATG 60.607 55.000 0.00 0.00 0.00 2.82
631 632 0.111061 TTGTGTGGAGGCAGCTCAAT 59.889 50.000 0.00 0.00 0.00 2.57
632 633 0.111061 ATTGTGTGGAGGCAGCTCAA 59.889 50.000 0.00 0.00 0.00 3.02
633 634 0.111061 AATTGTGTGGAGGCAGCTCA 59.889 50.000 0.00 0.00 0.00 4.26
634 635 1.251251 AAATTGTGTGGAGGCAGCTC 58.749 50.000 0.00 0.00 0.00 4.09
635 636 1.708341 AAAATTGTGTGGAGGCAGCT 58.292 45.000 0.00 0.00 0.00 4.24
636 637 2.531522 AAAAATTGTGTGGAGGCAGC 57.468 45.000 0.00 0.00 0.00 5.25
659 660 2.298163 GGTTTACTGAGAGGGACGAACA 59.702 50.000 0.00 0.00 0.00 3.18
685 689 1.340889 GAAAATTGTGTGGAGGCAGCA 59.659 47.619 0.00 0.00 0.00 4.41
721 726 3.572604 AAAATCTGCAAAGCTGAGAGC 57.427 42.857 4.94 0.00 39.64 4.09
786 817 3.205784 AGCTACTGAATGGGCTGATTC 57.794 47.619 0.00 3.66 33.50 2.52
837 868 0.620556 GCCATGAGGTGAGGGAAGAA 59.379 55.000 0.00 0.00 37.19 2.52
840 871 1.229951 AGGCCATGAGGTGAGGGAA 60.230 57.895 5.01 0.00 37.19 3.97
842 873 1.277580 AAGAGGCCATGAGGTGAGGG 61.278 60.000 5.01 0.00 37.19 4.30
845 876 1.487976 GATGAAGAGGCCATGAGGTGA 59.512 52.381 5.01 0.00 37.19 4.02
846 877 1.489649 AGATGAAGAGGCCATGAGGTG 59.510 52.381 5.01 0.00 37.19 4.00
847 878 1.767681 GAGATGAAGAGGCCATGAGGT 59.232 52.381 5.01 0.00 37.19 3.85
848 879 1.767088 TGAGATGAAGAGGCCATGAGG 59.233 52.381 5.01 0.00 38.23 3.86
849 880 3.118334 AGTTGAGATGAAGAGGCCATGAG 60.118 47.826 5.01 0.00 0.00 2.90
850 881 2.842496 AGTTGAGATGAAGAGGCCATGA 59.158 45.455 5.01 0.00 0.00 3.07
851 882 3.278668 AGTTGAGATGAAGAGGCCATG 57.721 47.619 5.01 0.00 0.00 3.66
852 883 4.384647 GGTTAGTTGAGATGAAGAGGCCAT 60.385 45.833 5.01 0.00 0.00 4.40
853 884 3.055094 GGTTAGTTGAGATGAAGAGGCCA 60.055 47.826 5.01 0.00 0.00 5.36
876 907 3.075641 GGAGTGGAGGGACGGGAC 61.076 72.222 0.00 0.00 0.00 4.46
881 912 4.083862 GTGGCGGAGTGGAGGGAC 62.084 72.222 0.00 0.00 0.00 4.46
882 913 4.631740 TGTGGCGGAGTGGAGGGA 62.632 66.667 0.00 0.00 0.00 4.20
996 1046 1.675641 GCCAAGGCTCACCATCGTT 60.676 57.895 3.29 0.00 39.06 3.85
1172 1230 0.810648 GCCAAAGATGCATGGAACGA 59.189 50.000 2.46 0.00 39.12 3.85
1179 1237 1.876497 AAACGGCGCCAAAGATGCAT 61.876 50.000 28.98 0.00 0.00 3.96
1214 1282 1.471153 GGCTAGACTAACAACCTCCGC 60.471 57.143 0.00 0.00 0.00 5.54
1215 1283 1.136500 GGGCTAGACTAACAACCTCCG 59.864 57.143 0.00 0.00 0.00 4.63
1232 1376 1.692411 CCCTTAACCATTGCTAGGGC 58.308 55.000 0.00 0.00 39.18 5.19
1275 1419 1.659098 CCTTACGAACTGTGAATCGCC 59.341 52.381 0.63 0.00 42.61 5.54
1283 1427 4.441634 GCATCTACCATCCTTACGAACTGT 60.442 45.833 0.00 0.00 0.00 3.55
1292 1436 3.135530 GGTTCTCTGCATCTACCATCCTT 59.864 47.826 0.00 0.00 0.00 3.36
1294 1438 2.703007 AGGTTCTCTGCATCTACCATCC 59.297 50.000 9.28 0.00 0.00 3.51
1296 1440 2.703007 GGAGGTTCTCTGCATCTACCAT 59.297 50.000 9.28 0.00 33.66 3.55
1313 1462 5.473039 CCATAAAAAGAAAAGCTGTGGAGG 58.527 41.667 0.00 0.00 0.00 4.30
1397 1550 2.086869 CAACTTCATTCAGCCCATCGT 58.913 47.619 0.00 0.00 0.00 3.73
1398 1551 2.086869 ACAACTTCATTCAGCCCATCG 58.913 47.619 0.00 0.00 0.00 3.84
1405 1558 4.046462 CAGCCAAACACAACTTCATTCAG 58.954 43.478 0.00 0.00 0.00 3.02
1406 1559 3.446873 ACAGCCAAACACAACTTCATTCA 59.553 39.130 0.00 0.00 0.00 2.57
1407 1560 4.044426 GACAGCCAAACACAACTTCATTC 58.956 43.478 0.00 0.00 0.00 2.67
1414 1567 0.385390 CCCTGACAGCCAAACACAAC 59.615 55.000 0.00 0.00 0.00 3.32
1472 1627 2.618442 ACTCCGTTAAAAACCGACCA 57.382 45.000 0.00 0.00 0.00 4.02
1476 1631 6.291067 AGAAACTAACTCCGTTAAAAACCG 57.709 37.500 0.00 0.00 0.00 4.44
1487 1642 6.507958 ACTAACTCCGTAGAAACTAACTCC 57.492 41.667 0.00 0.00 0.00 3.85
1489 1644 8.081025 CAGAAACTAACTCCGTAGAAACTAACT 58.919 37.037 0.00 0.00 0.00 2.24
1496 1651 7.869429 CCTAAAACAGAAACTAACTCCGTAGAA 59.131 37.037 0.00 0.00 0.00 2.10
1497 1652 7.231317 TCCTAAAACAGAAACTAACTCCGTAGA 59.769 37.037 0.00 0.00 0.00 2.59
1498 1653 7.373493 TCCTAAAACAGAAACTAACTCCGTAG 58.627 38.462 0.00 0.00 0.00 3.51
1499 1654 7.288810 TCCTAAAACAGAAACTAACTCCGTA 57.711 36.000 0.00 0.00 0.00 4.02
1500 1655 6.165700 TCCTAAAACAGAAACTAACTCCGT 57.834 37.500 0.00 0.00 0.00 4.69
1501 1656 7.386848 TCATTCCTAAAACAGAAACTAACTCCG 59.613 37.037 0.00 0.00 0.00 4.63
1502 1657 8.617290 TCATTCCTAAAACAGAAACTAACTCC 57.383 34.615 0.00 0.00 0.00 3.85
1550 1705 5.938322 TCTTTCGTGATAAATTGCTTGTCC 58.062 37.500 0.00 0.00 0.00 4.02
1559 1714 5.106197 TGTTGCAGCATCTTTCGTGATAAAT 60.106 36.000 0.00 0.00 0.00 1.40
1571 1726 1.812235 TCACGATTGTTGCAGCATCT 58.188 45.000 3.36 0.00 0.00 2.90
1643 1798 2.435059 GTCTCCTCCTGTTGCGCC 60.435 66.667 4.18 0.00 0.00 6.53
1660 1815 2.102252 GTGAGGTTAGCTCCATCTCCAG 59.898 54.545 9.04 0.00 0.00 3.86
1661 1816 2.111384 GTGAGGTTAGCTCCATCTCCA 58.889 52.381 9.04 0.00 0.00 3.86
1708 1863 3.397613 ATGAGCTCCTCGGCCTTGC 62.398 63.158 12.15 0.00 32.35 4.01
1737 1892 4.224991 TGATGATCTCACTTGGATGCAA 57.775 40.909 0.00 0.00 0.00 4.08
1759 1914 0.039618 AATGGCCTTGGTGTACCCAG 59.960 55.000 3.32 0.00 46.31 4.45
1781 1936 5.479716 GTCATTGGACGGTAAATACCTTG 57.520 43.478 7.94 0.00 44.25 3.61
1801 1991 8.317679 AGAGGATGAATAATACAATGCCTAGTC 58.682 37.037 0.00 0.00 0.00 2.59
1820 2010 7.714377 GCCCAGAATAATATATGTGAGAGGATG 59.286 40.741 0.00 0.00 0.00 3.51
1826 2016 7.335422 GGAGTTGCCCAGAATAATATATGTGAG 59.665 40.741 0.00 0.00 0.00 3.51
1830 2024 7.621428 CAGGAGTTGCCCAGAATAATATATG 57.379 40.000 0.00 0.00 37.37 1.78
1864 2058 6.019075 GCGTCTGCACAATACAAAGATATGTA 60.019 38.462 0.00 0.00 42.15 2.29
1866 2060 5.007039 AGCGTCTGCACAATACAAAGATATG 59.993 40.000 0.00 0.00 46.23 1.78
1867 2061 5.118990 AGCGTCTGCACAATACAAAGATAT 58.881 37.500 0.00 0.00 46.23 1.63
1869 2063 3.338249 AGCGTCTGCACAATACAAAGAT 58.662 40.909 0.00 0.00 46.23 2.40
1873 2067 1.535028 CCAAGCGTCTGCACAATACAA 59.465 47.619 0.00 0.00 46.23 2.41
1875 2069 0.447801 CCCAAGCGTCTGCACAATAC 59.552 55.000 0.00 0.00 46.23 1.89
1876 2070 0.323302 TCCCAAGCGTCTGCACAATA 59.677 50.000 0.00 0.00 46.23 1.90
1877 2071 0.322816 ATCCCAAGCGTCTGCACAAT 60.323 50.000 0.00 0.00 46.23 2.71
1878 2072 0.537143 AATCCCAAGCGTCTGCACAA 60.537 50.000 0.00 0.00 46.23 3.33
1879 2073 0.537143 AAATCCCAAGCGTCTGCACA 60.537 50.000 0.00 0.00 46.23 4.57
1893 2087 6.240549 TCTCAACTAGATCCTCCAAAATCC 57.759 41.667 0.00 0.00 0.00 3.01
1921 2115 7.113437 TGTTCCTTACATCCATATTTTCGGAA 58.887 34.615 0.00 0.00 34.22 4.30
1924 2118 7.282224 TCCTTGTTCCTTACATCCATATTTTCG 59.718 37.037 0.00 0.00 36.44 3.46
1991 2185 2.026915 GCAAATCCTCCTGCCCAAAAAT 60.027 45.455 0.00 0.00 32.18 1.82
1992 2186 1.347378 GCAAATCCTCCTGCCCAAAAA 59.653 47.619 0.00 0.00 32.18 1.94
1993 2187 0.975887 GCAAATCCTCCTGCCCAAAA 59.024 50.000 0.00 0.00 32.18 2.44
1999 2193 0.807496 GACACAGCAAATCCTCCTGC 59.193 55.000 0.00 0.00 38.91 4.85
2009 2203 1.001974 AGCGATAAGTGGACACAGCAA 59.998 47.619 5.14 0.00 0.00 3.91
2024 2218 4.881019 AGAATTAGCCTACATCAGCGAT 57.119 40.909 0.00 0.00 0.00 4.58
2043 2237 2.572556 TCGGGTAATTAAGGTGGCAAGA 59.427 45.455 0.00 0.00 0.00 3.02
2071 2265 5.733620 AGTTCATGATGTGGAAAAATGCT 57.266 34.783 0.00 0.00 0.00 3.79
2106 2304 4.918810 AACAGATGAAACAGAACAACCC 57.081 40.909 0.00 0.00 0.00 4.11
2131 2329 3.448660 GGATACAGGCCTGAAAAGCAATT 59.551 43.478 39.19 15.73 0.00 2.32
2134 2332 1.354031 TGGATACAGGCCTGAAAAGCA 59.646 47.619 39.19 15.81 46.17 3.91
2239 2437 0.177373 GAACCATCCCACGGACTACC 59.823 60.000 0.00 0.00 32.98 3.18
2294 2492 2.234661 TCGAGCTCACCATCACATTCTT 59.765 45.455 15.40 0.00 0.00 2.52
2356 2561 9.630098 AAATGCATTGTTGTGAGTAAAATAGAG 57.370 29.630 13.82 0.00 0.00 2.43
2398 2610 6.992715 GCATTAGTACTCTACAATGTGGGAAT 59.007 38.462 14.57 0.00 33.61 3.01
2399 2611 6.070481 TGCATTAGTACTCTACAATGTGGGAA 60.070 38.462 14.57 0.00 33.61 3.97
2450 2662 4.421131 ACAGAGTACAGAAGGAGATTGGT 58.579 43.478 0.00 0.00 0.00 3.67
2555 2925 4.381411 AGACCAACTAAGCTTCAGTGTTC 58.619 43.478 0.00 0.00 0.00 3.18
2588 3306 1.424638 ACATTATGGGACGGAGGGAG 58.575 55.000 0.00 0.00 0.00 4.30
2589 3307 2.779429 TACATTATGGGACGGAGGGA 57.221 50.000 0.00 0.00 0.00 4.20
2590 3308 2.969950 TCTTACATTATGGGACGGAGGG 59.030 50.000 0.00 0.00 0.00 4.30
2591 3309 3.552273 CGTCTTACATTATGGGACGGAGG 60.552 52.174 20.50 5.87 43.69 4.30
2592 3310 3.639538 CGTCTTACATTATGGGACGGAG 58.360 50.000 20.50 2.74 43.69 4.63
2593 3311 3.720949 CGTCTTACATTATGGGACGGA 57.279 47.619 20.50 2.30 43.69 4.69
2638 3356 5.122711 CCGTCCCATAATGTAAGACGTTTTT 59.877 40.000 9.63 0.00 46.62 1.94
2639 3357 4.632688 CCGTCCCATAATGTAAGACGTTTT 59.367 41.667 9.63 0.00 46.62 2.43
2640 3358 4.081531 TCCGTCCCATAATGTAAGACGTTT 60.082 41.667 9.63 0.00 46.62 3.60
2641 3359 3.448301 TCCGTCCCATAATGTAAGACGTT 59.552 43.478 9.63 0.00 46.62 3.99
2642 3360 3.025978 TCCGTCCCATAATGTAAGACGT 58.974 45.455 9.63 0.00 46.62 4.34
2644 3362 3.244112 CCCTCCGTCCCATAATGTAAGAC 60.244 52.174 0.00 0.00 0.00 3.01
2645 3363 2.969950 CCCTCCGTCCCATAATGTAAGA 59.030 50.000 0.00 0.00 0.00 2.10
2646 3364 2.969950 TCCCTCCGTCCCATAATGTAAG 59.030 50.000 0.00 0.00 0.00 2.34
2647 3365 2.969950 CTCCCTCCGTCCCATAATGTAA 59.030 50.000 0.00 0.00 0.00 2.41
2648 3366 2.090943 ACTCCCTCCGTCCCATAATGTA 60.091 50.000 0.00 0.00 0.00 2.29
2649 3367 1.344087 ACTCCCTCCGTCCCATAATGT 60.344 52.381 0.00 0.00 0.00 2.71
2650 3368 1.424638 ACTCCCTCCGTCCCATAATG 58.575 55.000 0.00 0.00 0.00 1.90
2651 3369 3.240302 CTTACTCCCTCCGTCCCATAAT 58.760 50.000 0.00 0.00 0.00 1.28
2652 3370 2.023695 ACTTACTCCCTCCGTCCCATAA 60.024 50.000 0.00 0.00 0.00 1.90
2653 3371 1.572415 ACTTACTCCCTCCGTCCCATA 59.428 52.381 0.00 0.00 0.00 2.74
2654 3372 0.338814 ACTTACTCCCTCCGTCCCAT 59.661 55.000 0.00 0.00 0.00 4.00
2655 3373 0.115745 AACTTACTCCCTCCGTCCCA 59.884 55.000 0.00 0.00 0.00 4.37
2656 3374 1.273759 AAACTTACTCCCTCCGTCCC 58.726 55.000 0.00 0.00 0.00 4.46
2657 3375 3.513119 AGTAAAACTTACTCCCTCCGTCC 59.487 47.826 0.00 0.00 0.00 4.79
2658 3376 4.219288 TCAGTAAAACTTACTCCCTCCGTC 59.781 45.833 0.00 0.00 0.00 4.79
2659 3377 4.154942 TCAGTAAAACTTACTCCCTCCGT 58.845 43.478 0.00 0.00 0.00 4.69
2660 3378 4.796038 TCAGTAAAACTTACTCCCTCCG 57.204 45.455 0.00 0.00 0.00 4.63
2661 3379 6.127140 TGCTATCAGTAAAACTTACTCCCTCC 60.127 42.308 0.00 0.00 0.00 4.30
2662 3380 6.875076 TGCTATCAGTAAAACTTACTCCCTC 58.125 40.000 0.00 0.00 0.00 4.30
2663 3381 6.869206 TGCTATCAGTAAAACTTACTCCCT 57.131 37.500 0.00 0.00 0.00 4.20
2664 3382 6.315642 GGTTGCTATCAGTAAAACTTACTCCC 59.684 42.308 0.00 0.00 0.00 4.30
2665 3383 6.315642 GGGTTGCTATCAGTAAAACTTACTCC 59.684 42.308 0.00 0.00 0.00 3.85
2666 3384 7.104290 AGGGTTGCTATCAGTAAAACTTACTC 58.896 38.462 0.00 0.00 0.00 2.59
2667 3385 7.017319 AGGGTTGCTATCAGTAAAACTTACT 57.983 36.000 0.00 0.00 0.00 2.24
2668 3386 8.827677 CATAGGGTTGCTATCAGTAAAACTTAC 58.172 37.037 0.00 0.00 0.00 2.34
2669 3387 8.764558 TCATAGGGTTGCTATCAGTAAAACTTA 58.235 33.333 0.00 0.00 0.00 2.24
2670 3388 7.630082 TCATAGGGTTGCTATCAGTAAAACTT 58.370 34.615 0.00 0.00 0.00 2.66
2737 3460 5.048224 ACAGAGCATAAGCCATAATGATTGC 60.048 40.000 0.00 0.00 43.56 3.56
2748 3471 2.819608 TGGTCAAAACAGAGCATAAGCC 59.180 45.455 0.00 0.00 40.73 4.35
2761 3485 5.654650 ACTAAACAACAGTCCATGGTCAAAA 59.345 36.000 12.58 0.00 0.00 2.44
3021 3757 3.929094 ACCGCAACCTAAACGATAGAAA 58.071 40.909 0.00 0.00 41.38 2.52
3024 3760 5.734311 CAAATACCGCAACCTAAACGATAG 58.266 41.667 0.00 0.00 46.19 2.08
3029 3765 3.498082 CAGCAAATACCGCAACCTAAAC 58.502 45.455 0.00 0.00 0.00 2.01
3129 3883 4.570369 ACCAGCAAAGCATACAAACAAAAC 59.430 37.500 0.00 0.00 0.00 2.43
3196 3952 9.716507 CATTATAAGGTTACTACACATGTTTGC 57.283 33.333 0.00 0.00 0.00 3.68
3221 3977 0.387494 CAACATCGCAAGCATGTGCA 60.387 50.000 7.83 0.00 45.19 4.57
3395 4151 9.334947 CTAAACCAAGATGACAGTTCATATGAT 57.665 33.333 6.17 0.00 42.95 2.45
3535 4291 6.951971 AGAAGTATCAGTTGTAAAGCAGGAT 58.048 36.000 0.00 0.00 0.00 3.24
3837 4599 3.123621 GCACAAAGTGATGTTACTCGAGG 59.876 47.826 18.41 0.00 35.23 4.63
3885 4679 4.819630 TCATTTTGGACAACAGTCACCTAC 59.180 41.667 0.00 0.00 33.90 3.18
3934 4728 1.070134 AGTACTGCCTCGCAAGACAAA 59.930 47.619 0.00 0.00 45.01 2.83
3996 4790 7.543172 CACATACATACCTTGTACGTGTTTACT 59.457 37.037 0.00 0.00 45.45 2.24
4056 4852 8.764287 TCAGACAATAATGTAGCGTGAATAATG 58.236 33.333 0.00 0.00 40.74 1.90
4061 4859 7.119116 ACAAATCAGACAATAATGTAGCGTGAA 59.881 33.333 0.00 0.00 40.74 3.18
4065 4863 7.003939 TCACAAATCAGACAATAATGTAGCG 57.996 36.000 0.00 0.00 40.74 4.26
4161 4959 4.013267 AGTTCTACTTCTGTTGCAGCAT 57.987 40.909 2.87 0.00 0.00 3.79
4280 5080 9.466497 ACTATCATTTGTAACCTCATGTTTCAT 57.534 29.630 0.00 0.00 38.42 2.57
4860 5807 5.880332 TCCAAACCTATTGACAAGTAGATGC 59.120 40.000 0.00 0.00 0.00 3.91
4867 5977 6.840780 AGGATTTCCAAACCTATTGACAAG 57.159 37.500 0.00 0.00 38.89 3.16
4880 5990 6.431234 GTGAAAGCTTCTAGAAGGATTTCCAA 59.569 38.462 29.22 14.39 38.80 3.53
4903 6013 7.228108 AGGACAACAGCATAATCAGATATTGTG 59.772 37.037 0.00 0.00 0.00 3.33
4909 6019 5.748402 TCAAGGACAACAGCATAATCAGAT 58.252 37.500 0.00 0.00 0.00 2.90
4914 6024 5.590259 GTGGTATCAAGGACAACAGCATAAT 59.410 40.000 0.00 0.00 0.00 1.28
4964 8097 8.739039 TGGGTATGAAAAAGAACAGATTATGTG 58.261 33.333 0.00 0.00 43.00 3.21
5003 8136 6.258727 AGCACGGAAAATATAGATGACAACAG 59.741 38.462 0.00 0.00 0.00 3.16
5255 8391 7.544566 AGGTATTAGCATATGAATAAACGACGG 59.455 37.037 6.97 0.00 0.00 4.79
5256 8392 8.462143 AGGTATTAGCATATGAATAAACGACG 57.538 34.615 6.97 0.00 0.00 5.12
5373 8513 7.090173 GGTGCGCCATTAATGTCAATATTATT 58.910 34.615 12.58 0.00 34.09 1.40
5381 8521 3.256281 TGGTGCGCCATTAATGTCA 57.744 47.368 16.89 6.47 40.46 3.58
5452 8592 7.384115 GCGCTATTAGTATTTGGACACTAATGA 59.616 37.037 14.28 2.41 44.04 2.57
5467 8607 2.696187 TGGATGTGGTGCGCTATTAGTA 59.304 45.455 9.73 0.00 0.00 1.82
5468 8608 1.484653 TGGATGTGGTGCGCTATTAGT 59.515 47.619 9.73 0.00 0.00 2.24
5469 8609 2.238942 TGGATGTGGTGCGCTATTAG 57.761 50.000 9.73 0.00 0.00 1.73
5470 8610 2.103941 TCATGGATGTGGTGCGCTATTA 59.896 45.455 9.73 0.00 0.00 0.98
5471 8611 1.134128 TCATGGATGTGGTGCGCTATT 60.134 47.619 9.73 0.00 0.00 1.73
5472 8612 0.469494 TCATGGATGTGGTGCGCTAT 59.531 50.000 9.73 0.00 0.00 2.97
5473 8613 0.469494 ATCATGGATGTGGTGCGCTA 59.531 50.000 9.73 0.00 0.00 4.26
5474 8614 1.099295 CATCATGGATGTGGTGCGCT 61.099 55.000 9.73 0.00 35.54 5.92
5475 8615 1.357690 CATCATGGATGTGGTGCGC 59.642 57.895 0.00 0.00 35.54 6.09
5476 8616 1.357690 GCATCATGGATGTGGTGCG 59.642 57.895 7.92 0.00 41.60 5.34
5477 8617 1.357690 CGCATCATGGATGTGGTGC 59.642 57.895 11.01 2.19 44.04 5.01
5478 8618 1.357690 GCGCATCATGGATGTGGTG 59.642 57.895 18.24 4.45 46.70 4.17
5479 8619 1.825191 GGCGCATCATGGATGTGGT 60.825 57.895 10.83 0.00 46.70 4.16
5480 8620 1.824760 TGGCGCATCATGGATGTGG 60.825 57.895 10.83 8.02 46.70 4.17
5482 8622 0.469494 TAGTGGCGCATCATGGATGT 59.531 50.000 10.83 0.00 41.60 3.06
5483 8623 1.154197 CTAGTGGCGCATCATGGATG 58.846 55.000 10.83 1.90 42.37 3.51
5484 8624 0.761187 ACTAGTGGCGCATCATGGAT 59.239 50.000 10.83 0.00 0.00 3.41
5485 8625 1.408969 TACTAGTGGCGCATCATGGA 58.591 50.000 10.83 0.00 0.00 3.41
5486 8626 1.867233 GTTACTAGTGGCGCATCATGG 59.133 52.381 10.83 0.00 0.00 3.66
5487 8627 2.549926 TGTTACTAGTGGCGCATCATG 58.450 47.619 10.83 0.00 0.00 3.07
5488 8628 2.979814 TGTTACTAGTGGCGCATCAT 57.020 45.000 10.83 0.00 0.00 2.45
5489 8629 2.753055 TTGTTACTAGTGGCGCATCA 57.247 45.000 10.83 0.00 0.00 3.07
5490 8630 4.616181 ATTTTGTTACTAGTGGCGCATC 57.384 40.909 10.83 0.41 0.00 3.91
5491 8631 5.385509 AAATTTTGTTACTAGTGGCGCAT 57.614 34.783 10.83 0.00 0.00 4.73
5492 8632 4.839668 AAATTTTGTTACTAGTGGCGCA 57.160 36.364 10.83 0.00 0.00 6.09
5518 8658 6.146347 GGTGCGCCATTACTAATTTTGAAAAA 59.854 34.615 12.58 0.00 34.09 1.94
5519 8659 5.635700 GGTGCGCCATTACTAATTTTGAAAA 59.364 36.000 12.58 0.00 34.09 2.29
5520 8660 5.164954 GGTGCGCCATTACTAATTTTGAAA 58.835 37.500 12.58 0.00 34.09 2.69
5521 8661 4.218635 TGGTGCGCCATTACTAATTTTGAA 59.781 37.500 16.89 0.00 40.46 2.69
5522 8662 3.759086 TGGTGCGCCATTACTAATTTTGA 59.241 39.130 16.89 0.00 40.46 2.69
5523 8663 4.103365 TGGTGCGCCATTACTAATTTTG 57.897 40.909 16.89 0.00 40.46 2.44
5609 8869 0.037139 TTAGTAATGGCGCACCGTGT 60.037 50.000 10.83 0.00 39.70 4.49
5853 9160 8.278639 ACCACATATCACATGGGAAACTTATTA 58.721 33.333 0.00 0.00 37.86 0.98
6044 9361 8.167605 TGAGGATTTTGTAAATGTTTAACGGA 57.832 30.769 0.00 0.00 0.00 4.69
6058 9375 8.934023 TTCTGTTAGGTATTTGAGGATTTTGT 57.066 30.769 0.00 0.00 0.00 2.83
6274 9637 1.270839 ACCTTGTTGATGTCTGGGACG 60.271 52.381 0.00 0.00 34.95 4.79
6279 9642 7.921786 TCCTATTAAACCTTGTTGATGTCTG 57.078 36.000 0.00 0.00 0.00 3.51
6325 9688 3.244422 CCACCTCACTTAACAGGCACTTA 60.244 47.826 0.00 0.00 34.60 2.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.