Multiple sequence alignment - TraesCS6D01G006900

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G006900 chr6D 100.000 4894 0 0 1 4894 2910226 2915119 0.000000e+00 9038.0
1 TraesCS6D01G006900 chr6D 79.972 2107 376 34 1682 3771 3076590 3074513 0.000000e+00 1511.0
2 TraesCS6D01G006900 chr6D 80.025 1617 280 34 2211 3807 2897103 2898696 0.000000e+00 1157.0
3 TraesCS6D01G006900 chr6D 85.118 551 54 11 1 534 2895001 2895540 5.570000e-149 538.0
4 TraesCS6D01G006900 chr6D 82.618 466 69 8 1682 2146 2896557 2897011 7.630000e-108 401.0
5 TraesCS6D01G006900 chr6D 80.287 558 58 22 893 1409 2895997 2896543 1.660000e-99 374.0
6 TraesCS6D01G006900 chr6D 89.669 242 25 0 1170 1411 3076843 3076602 4.760000e-80 309.0
7 TraesCS6D01G006900 chr6D 89.474 152 15 1 2999 3149 2923222 2923373 1.800000e-44 191.0
8 TraesCS6D01G006900 chr6A 93.696 3855 192 20 1 3821 1893845 1897682 0.000000e+00 5725.0
9 TraesCS6D01G006900 chr6A 78.615 2109 378 53 1693 3757 1921972 1924051 0.000000e+00 1328.0
10 TraesCS6D01G006900 chr6A 86.269 335 20 10 3829 4142 1897765 1898094 1.690000e-89 340.0
11 TraesCS6D01G006900 chr6A 82.927 410 34 16 4494 4888 1898227 1898615 2.180000e-88 337.0
12 TraesCS6D01G006900 chr6A 84.239 184 29 0 1228 1411 1921751 1921934 3.890000e-41 180.0
13 TraesCS6D01G006900 chr6B 93.472 3079 158 25 782 3821 6023608 6026682 0.000000e+00 4532.0
14 TraesCS6D01G006900 chr6B 90.424 543 35 8 1 536 6022833 6023365 0.000000e+00 699.0
15 TraesCS6D01G006900 chr6B 79.899 597 108 8 1682 2272 6240552 6239962 1.260000e-115 427.0
16 TraesCS6D01G006900 chr6B 77.551 539 108 11 1659 2191 6271644 6271113 3.680000e-81 313.0
17 TraesCS6D01G006900 chr6B 89.256 242 26 0 1170 1411 6240805 6240564 2.210000e-78 303.0
18 TraesCS6D01G006900 chr6B 83.270 263 21 7 3829 4073 6026765 6027022 2.290000e-53 220.0
19 TraesCS6D01G006900 chr6B 92.063 63 4 1 4384 4445 6027219 6027281 2.430000e-13 87.9
20 TraesCS6D01G006900 chr1B 93.197 147 9 1 4220 4366 365691867 365692012 1.070000e-51 215.0
21 TraesCS6D01G006900 chr7A 87.821 156 19 0 4215 4370 119697758 119697603 3.010000e-42 183.0
22 TraesCS6D01G006900 chr7A 89.423 104 11 0 4267 4370 104242292 104242189 1.110000e-26 132.0
23 TraesCS6D01G006900 chr4D 94.118 102 6 0 4267 4368 123148509 123148408 6.560000e-34 156.0
24 TraesCS6D01G006900 chr4D 87.500 112 11 2 4257 4368 336222733 336222625 5.140000e-25 126.0
25 TraesCS6D01G006900 chr7B 91.150 113 8 2 4258 4369 565906726 565906615 8.480000e-33 152.0
26 TraesCS6D01G006900 chr4B 83.019 159 16 4 4212 4370 642729229 642729376 3.070000e-27 134.0
27 TraesCS6D01G006900 chr4B 91.463 82 6 1 4251 4331 472205215 472205296 1.440000e-20 111.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G006900 chr6D 2910226 2915119 4893 False 9038.000 9038 100.000000 1 4894 1 chr6D.!!$F1 4893
1 TraesCS6D01G006900 chr6D 3074513 3076843 2330 True 910.000 1511 84.820500 1170 3771 2 chr6D.!!$R1 2601
2 TraesCS6D01G006900 chr6D 2895001 2898696 3695 False 617.500 1157 82.012000 1 3807 4 chr6D.!!$F3 3806
3 TraesCS6D01G006900 chr6A 1893845 1898615 4770 False 2134.000 5725 87.630667 1 4888 3 chr6A.!!$F1 4887
4 TraesCS6D01G006900 chr6A 1921751 1924051 2300 False 754.000 1328 81.427000 1228 3757 2 chr6A.!!$F2 2529
5 TraesCS6D01G006900 chr6B 6022833 6027281 4448 False 1384.725 4532 89.807250 1 4445 4 chr6B.!!$F1 4444
6 TraesCS6D01G006900 chr6B 6239962 6240805 843 True 365.000 427 84.577500 1170 2272 2 chr6B.!!$R2 1102
7 TraesCS6D01G006900 chr6B 6271113 6271644 531 True 313.000 313 77.551000 1659 2191 1 chr6B.!!$R1 532

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
890 1088 0.038744 CCCAGGCACATGGAGAAGTT 59.961 55.000 2.23 0.0 43.57 2.66 F
930 1179 2.103042 GCACACAGGGAGCATCGAC 61.103 63.158 0.00 0.0 34.37 4.20 F
2796 3154 2.286523 CCTCCTCACGCTCACCCTT 61.287 63.158 0.00 0.0 0.00 3.95 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2868 3226 0.249996 GCATGGGCATTTGGGCATAC 60.250 55.000 0.00 0.00 45.66 2.39 R
2876 3234 2.114670 CGTCGGAGCATGGGCATTT 61.115 57.895 0.00 0.00 44.61 2.32 R
4135 4671 0.032017 AGGGCTGGGTAGTACCTCAG 60.032 60.000 23.39 23.39 38.64 3.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
64 65 0.108585 AAAGAAGCGTGCTCTTCCCA 59.891 50.000 0.00 0.00 42.52 4.37
81 82 4.301072 TCCCAGTTATCCTTTTGTGAGG 57.699 45.455 0.00 0.00 38.20 3.86
93 94 4.761739 CCTTTTGTGAGGCATGTTCTTCTA 59.238 41.667 0.00 0.00 0.00 2.10
98 99 3.055819 GTGAGGCATGTTCTTCTACCTGA 60.056 47.826 0.00 0.00 0.00 3.86
112 113 4.532834 TCTACCTGACCTTTTGCTTTGTT 58.467 39.130 0.00 0.00 0.00 2.83
148 149 3.069872 ACAAATGCATCTGTTCTTTGCCA 59.930 39.130 0.00 0.00 35.51 4.92
149 150 4.250464 CAAATGCATCTGTTCTTTGCCAT 58.750 39.130 0.00 0.00 35.51 4.40
244 250 0.670546 GCCGTGCGCATATATGTCCT 60.671 55.000 15.91 0.00 37.47 3.85
247 253 2.094700 CCGTGCGCATATATGTCCTAGT 60.095 50.000 15.91 0.00 0.00 2.57
250 256 4.379082 CGTGCGCATATATGTCCTAGTGTA 60.379 45.833 15.91 0.00 0.00 2.90
367 373 7.770433 CAGGTGATTCTAATGATCTTTGTGGTA 59.230 37.037 4.17 0.00 0.00 3.25
395 402 4.984161 GGTTGTGTTTGTTCTCAATCATGG 59.016 41.667 0.00 0.00 36.23 3.66
411 418 9.961265 CTCAATCATGGTATAGTTCTAACGTAA 57.039 33.333 0.00 0.00 0.00 3.18
442 464 3.869065 TGATGACGAACCTTCCCATTAC 58.131 45.455 0.00 0.00 0.00 1.89
523 545 4.464244 TCGTTGGATGACTCTCTTCTCAAT 59.536 41.667 0.00 0.00 0.00 2.57
591 708 3.320541 CAGTACCTCAGCCCTTCTCATAG 59.679 52.174 0.00 0.00 0.00 2.23
644 762 7.179269 ACTAAAAGAGGGGCAATATGTACAAA 58.821 34.615 0.00 0.00 0.00 2.83
769 963 5.164041 GCTTGCAAAAACGTTTTACTTGTGA 60.164 36.000 25.44 12.08 0.00 3.58
773 967 5.275096 GCAAAAACGTTTTACTTGTGAGACG 60.275 40.000 25.44 6.97 36.65 4.18
874 1068 9.189156 CCAATTCTGAGAATAATTAAAGACCCA 57.811 33.333 8.30 0.00 0.00 4.51
890 1088 0.038744 CCCAGGCACATGGAGAAGTT 59.961 55.000 2.23 0.00 43.57 2.66
930 1179 2.103042 GCACACAGGGAGCATCGAC 61.103 63.158 0.00 0.00 34.37 4.20
949 1198 2.670934 CGTGCCTTGCCTCTTGCT 60.671 61.111 0.00 0.00 42.00 3.91
1413 1703 3.967987 GTCCTACATGTTCTCCCAGGTAT 59.032 47.826 2.30 0.00 31.91 2.73
1463 1753 9.981114 AAAGAATTACCAAACCTTAGTGAAATG 57.019 29.630 0.00 0.00 0.00 2.32
1465 1755 9.802039 AGAATTACCAAACCTTAGTGAAATGTA 57.198 29.630 0.00 0.00 0.00 2.29
1512 1803 6.535150 GGTTTTGATCTATCGATGTTCACTCA 59.465 38.462 8.54 0.00 0.00 3.41
1680 1972 3.537206 GAGCAAGCCACCCGACACT 62.537 63.158 0.00 0.00 0.00 3.55
2061 2374 2.427905 CTCCGCGACGACGAACAA 60.428 61.111 8.23 0.00 42.66 2.83
2161 2480 3.765511 CCATGGCTTCAAGATCCAAGAAA 59.234 43.478 0.00 0.00 33.04 2.52
2186 2505 9.671279 AAAAGAAATGAACAAAATTCTCCTTGT 57.329 25.926 0.00 0.00 37.36 3.16
2393 2739 4.767255 GGCAGAGGCAGACACCCG 62.767 72.222 0.00 0.00 43.71 5.28
2796 3154 2.286523 CCTCCTCACGCTCACCCTT 61.287 63.158 0.00 0.00 0.00 3.95
2833 3191 6.106003 ACATATGAATTCTTGCAGTACGTGA 58.894 36.000 10.38 0.00 0.00 4.35
2838 3196 2.941453 TCTTGCAGTACGTGATCTCC 57.059 50.000 0.00 0.00 0.00 3.71
2868 3226 2.341318 TCGTGTCCGTGATGTACAAG 57.659 50.000 0.00 0.00 35.01 3.16
2876 3234 2.419436 CCGTGATGTACAAGTATGCCCA 60.419 50.000 0.00 0.00 0.00 5.36
2879 3237 4.335315 CGTGATGTACAAGTATGCCCAAAT 59.665 41.667 0.00 0.00 0.00 2.32
2883 3241 1.194218 ACAAGTATGCCCAAATGCCC 58.806 50.000 0.00 0.00 0.00 5.36
2891 3249 2.788640 CCCAAATGCCCATGCTCCG 61.789 63.158 0.00 0.00 38.71 4.63
2952 3310 3.064324 GCAAAGCACCGCTCCCAT 61.064 61.111 0.00 0.00 38.25 4.00
2968 3326 0.107508 CCATGCCGTCATCAAGGTCT 60.108 55.000 0.00 0.00 0.00 3.85
3036 3394 3.077556 ATGCTCGTCTCCCGCCTT 61.078 61.111 0.00 0.00 36.19 4.35
3178 3536 1.173913 GGCTACGTTGGAAAGGCAAT 58.826 50.000 0.00 0.00 34.48 3.56
3186 3544 1.549203 TGGAAAGGCAATGCTTCCTC 58.451 50.000 21.66 8.76 39.54 3.71
3222 3580 1.296392 CGACCCCAAGATGAGCACA 59.704 57.895 0.00 0.00 0.00 4.57
3223 3581 0.107508 CGACCCCAAGATGAGCACAT 60.108 55.000 0.00 0.00 39.67 3.21
3573 3958 0.968901 TCACTACCAGTAGCGGTGGG 60.969 60.000 4.72 0.00 41.63 4.61
3821 4206 0.101219 TGATCACAGGCTCACGATCG 59.899 55.000 14.88 14.88 37.64 3.69
3822 4207 0.101399 GATCACAGGCTCACGATCGT 59.899 55.000 16.60 16.60 0.00 3.73
3824 4209 2.125912 ACAGGCTCACGATCGTGC 60.126 61.111 37.14 28.10 45.04 5.34
3825 4210 2.125952 CAGGCTCACGATCGTGCA 60.126 61.111 37.14 25.63 45.04 4.57
3826 4211 1.737735 CAGGCTCACGATCGTGCAA 60.738 57.895 37.14 23.31 45.04 4.08
3840 4300 7.900864 CACGATCGTGCAACTGTTATTTATTTA 59.099 33.333 32.93 0.00 39.39 1.40
3842 4302 8.882199 CGATCGTGCAACTGTTATTTATTTATG 58.118 33.333 7.03 0.00 31.75 1.90
3910 4370 7.440255 GGTTGGCGTAATAATACTGTAATGAGT 59.560 37.037 0.00 0.00 0.00 3.41
3922 4382 5.994250 ACTGTAATGAGTCAGTTGGCATAT 58.006 37.500 0.00 0.00 41.33 1.78
3923 4383 7.124573 ACTGTAATGAGTCAGTTGGCATATA 57.875 36.000 0.00 0.00 41.33 0.86
3937 4397 9.970395 CAGTTGGCATATAATCATGTAATGTTT 57.030 29.630 0.00 0.00 46.80 2.83
3981 4456 1.335810 CACAGTTGTGCTTGCAGATGT 59.664 47.619 0.00 0.00 39.39 3.06
3984 4459 2.792674 CAGTTGTGCTTGCAGATGTTTG 59.207 45.455 0.00 0.00 0.00 2.93
3988 4463 4.424061 TGTGCTTGCAGATGTTTGTATC 57.576 40.909 0.00 0.00 0.00 2.24
3989 4464 3.819902 TGTGCTTGCAGATGTTTGTATCA 59.180 39.130 0.00 0.00 0.00 2.15
3992 4469 6.319405 TGTGCTTGCAGATGTTTGTATCATAT 59.681 34.615 0.00 0.00 0.00 1.78
3995 4472 8.724229 TGCTTGCAGATGTTTGTATCATATATC 58.276 33.333 0.00 0.00 0.00 1.63
4119 4655 3.114606 TGAGATCTGGGCAAGGTATCAA 58.885 45.455 0.00 0.00 34.28 2.57
4135 4671 5.225642 GGTATCAACCGTATAACACTAGGC 58.774 45.833 0.00 0.00 35.62 3.93
4136 4672 5.010415 GGTATCAACCGTATAACACTAGGCT 59.990 44.000 0.00 0.00 35.62 4.58
4137 4673 4.380841 TCAACCGTATAACACTAGGCTG 57.619 45.455 0.00 0.00 0.00 4.85
4138 4674 4.018490 TCAACCGTATAACACTAGGCTGA 58.982 43.478 0.00 0.00 0.00 4.26
4139 4675 4.097437 TCAACCGTATAACACTAGGCTGAG 59.903 45.833 0.00 0.00 0.00 3.35
4140 4676 2.957006 ACCGTATAACACTAGGCTGAGG 59.043 50.000 0.00 0.00 0.00 3.86
4141 4677 2.957006 CCGTATAACACTAGGCTGAGGT 59.043 50.000 0.00 0.00 0.00 3.85
4142 4678 4.139786 CCGTATAACACTAGGCTGAGGTA 58.860 47.826 0.00 0.00 0.00 3.08
4143 4679 4.023365 CCGTATAACACTAGGCTGAGGTAC 60.023 50.000 0.00 0.00 0.00 3.34
4145 4681 5.994054 CGTATAACACTAGGCTGAGGTACTA 59.006 44.000 0.00 0.00 41.55 1.82
4146 4682 6.073331 CGTATAACACTAGGCTGAGGTACTAC 60.073 46.154 0.00 0.00 41.55 2.73
4147 4683 3.015675 ACACTAGGCTGAGGTACTACC 57.984 52.381 0.00 0.00 41.55 3.18
4148 4684 2.308690 CACTAGGCTGAGGTACTACCC 58.691 57.143 0.00 0.00 41.55 3.69
4149 4685 1.928077 ACTAGGCTGAGGTACTACCCA 59.072 52.381 0.00 0.00 41.55 4.51
4150 4686 2.091775 ACTAGGCTGAGGTACTACCCAG 60.092 54.545 14.80 14.80 41.55 4.45
4153 4689 2.517609 CTGAGGTACTACCCAGCCC 58.482 63.158 1.19 0.00 41.55 5.19
4154 4690 0.032017 CTGAGGTACTACCCAGCCCT 60.032 60.000 1.19 0.00 41.55 5.19
4155 4691 0.325296 TGAGGTACTACCCAGCCCTG 60.325 60.000 1.19 0.00 41.55 4.45
4156 4692 1.003051 AGGTACTACCCAGCCCTGG 59.997 63.158 7.36 7.36 44.66 4.45
4157 4693 1.823068 AGGTACTACCCAGCCCTGGT 61.823 60.000 12.98 4.51 43.86 4.00
4158 4694 2.485647 AGGTACTACCCAGCCCTGGTA 61.486 57.143 12.98 5.34 43.86 3.25
4159 4695 4.635235 AGGTACTACCCAGCCCTGGTAC 62.635 59.091 12.98 8.48 43.86 3.34
4164 4700 4.809513 CCAGCCCTGGTACTACCT 57.190 61.111 6.15 0.00 45.53 3.08
4205 4749 0.183492 ACTCACCCAGCAAGCAAAGA 59.817 50.000 0.00 0.00 0.00 2.52
4214 4758 5.188359 ACCCAGCAAGCAAAGATATTCATTT 59.812 36.000 0.00 0.00 0.00 2.32
4215 4759 6.380846 ACCCAGCAAGCAAAGATATTCATTTA 59.619 34.615 0.00 0.00 0.00 1.40
4216 4760 6.921857 CCCAGCAAGCAAAGATATTCATTTAG 59.078 38.462 0.00 0.00 0.00 1.85
4217 4761 6.921857 CCAGCAAGCAAAGATATTCATTTAGG 59.078 38.462 0.00 0.00 0.00 2.69
4218 4762 7.417116 CCAGCAAGCAAAGATATTCATTTAGGT 60.417 37.037 0.00 0.00 0.00 3.08
4219 4763 7.646922 CAGCAAGCAAAGATATTCATTTAGGTC 59.353 37.037 0.00 0.00 0.00 3.85
4220 4764 6.920210 GCAAGCAAAGATATTCATTTAGGTCC 59.080 38.462 0.00 0.00 0.00 4.46
4221 4765 7.201857 GCAAGCAAAGATATTCATTTAGGTCCT 60.202 37.037 0.00 0.00 0.00 3.85
4222 4766 7.814264 AGCAAAGATATTCATTTAGGTCCTG 57.186 36.000 0.00 0.00 0.00 3.86
4223 4767 7.349598 AGCAAAGATATTCATTTAGGTCCTGT 58.650 34.615 0.00 0.00 0.00 4.00
4224 4768 7.500559 AGCAAAGATATTCATTTAGGTCCTGTC 59.499 37.037 0.00 0.00 0.00 3.51
4225 4769 7.255277 GCAAAGATATTCATTTAGGTCCTGTCC 60.255 40.741 0.00 0.00 0.00 4.02
4226 4770 6.102897 AGATATTCATTTAGGTCCTGTCCG 57.897 41.667 0.00 0.00 0.00 4.79
4227 4771 3.560636 ATTCATTTAGGTCCTGTCCGG 57.439 47.619 0.00 0.00 0.00 5.14
4228 4772 2.241281 TCATTTAGGTCCTGTCCGGA 57.759 50.000 0.00 0.00 40.30 5.14
4229 4773 2.542550 TCATTTAGGTCCTGTCCGGAA 58.457 47.619 5.23 0.00 45.32 4.30
4230 4774 3.112263 TCATTTAGGTCCTGTCCGGAAT 58.888 45.455 5.23 0.00 45.32 3.01
4231 4775 3.134081 TCATTTAGGTCCTGTCCGGAATC 59.866 47.826 5.23 0.00 45.32 2.52
4232 4776 2.544844 TTAGGTCCTGTCCGGAATCT 57.455 50.000 5.23 0.00 45.32 2.40
4233 4777 2.068834 TAGGTCCTGTCCGGAATCTC 57.931 55.000 5.23 0.00 45.32 2.75
4234 4778 0.336737 AGGTCCTGTCCGGAATCTCT 59.663 55.000 5.23 0.00 45.32 3.10
4235 4779 0.747852 GGTCCTGTCCGGAATCTCTC 59.252 60.000 5.23 0.00 45.32 3.20
4236 4780 0.747852 GTCCTGTCCGGAATCTCTCC 59.252 60.000 5.23 0.00 45.32 3.71
4237 4781 0.335019 TCCTGTCCGGAATCTCTCCA 59.665 55.000 5.23 0.00 45.74 3.86
4238 4782 0.461961 CCTGTCCGGAATCTCTCCAC 59.538 60.000 5.23 0.00 45.74 4.02
4239 4783 1.479709 CTGTCCGGAATCTCTCCACT 58.520 55.000 5.23 0.00 45.74 4.00
4240 4784 1.407258 CTGTCCGGAATCTCTCCACTC 59.593 57.143 5.23 0.00 45.74 3.51
4241 4785 0.747852 GTCCGGAATCTCTCCACTCC 59.252 60.000 5.23 0.00 45.74 3.85
4242 4786 0.752009 TCCGGAATCTCTCCACTCCG 60.752 60.000 0.00 2.40 45.74 4.63
4243 4787 1.066587 CGGAATCTCTCCACTCCGC 59.933 63.158 0.00 0.00 45.74 5.54
4244 4788 1.388065 CGGAATCTCTCCACTCCGCT 61.388 60.000 0.00 0.00 45.74 5.52
4245 4789 0.387565 GGAATCTCTCCACTCCGCTC 59.612 60.000 0.00 0.00 44.67 5.03
4246 4790 0.387565 GAATCTCTCCACTCCGCTCC 59.612 60.000 0.00 0.00 0.00 4.70
4247 4791 0.324738 AATCTCTCCACTCCGCTCCA 60.325 55.000 0.00 0.00 0.00 3.86
4248 4792 0.324738 ATCTCTCCACTCCGCTCCAA 60.325 55.000 0.00 0.00 0.00 3.53
4249 4793 0.324738 TCTCTCCACTCCGCTCCAAT 60.325 55.000 0.00 0.00 0.00 3.16
4250 4794 1.063942 TCTCTCCACTCCGCTCCAATA 60.064 52.381 0.00 0.00 0.00 1.90
4251 4795 1.967066 CTCTCCACTCCGCTCCAATAT 59.033 52.381 0.00 0.00 0.00 1.28
4252 4796 2.366916 CTCTCCACTCCGCTCCAATATT 59.633 50.000 0.00 0.00 0.00 1.28
4253 4797 2.771943 TCTCCACTCCGCTCCAATATTT 59.228 45.455 0.00 0.00 0.00 1.40
4254 4798 3.134458 CTCCACTCCGCTCCAATATTTC 58.866 50.000 0.00 0.00 0.00 2.17
4255 4799 2.771943 TCCACTCCGCTCCAATATTTCT 59.228 45.455 0.00 0.00 0.00 2.52
4256 4800 2.874701 CCACTCCGCTCCAATATTTCTG 59.125 50.000 0.00 0.00 0.00 3.02
4257 4801 3.432186 CCACTCCGCTCCAATATTTCTGA 60.432 47.826 0.00 0.00 0.00 3.27
4258 4802 3.557595 CACTCCGCTCCAATATTTCTGAC 59.442 47.826 0.00 0.00 0.00 3.51
4259 4803 3.452627 ACTCCGCTCCAATATTTCTGACT 59.547 43.478 0.00 0.00 0.00 3.41
4260 4804 4.054671 CTCCGCTCCAATATTTCTGACTC 58.945 47.826 0.00 0.00 0.00 3.36
4261 4805 3.134458 CCGCTCCAATATTTCTGACTCC 58.866 50.000 0.00 0.00 0.00 3.85
4262 4806 3.432186 CCGCTCCAATATTTCTGACTCCA 60.432 47.826 0.00 0.00 0.00 3.86
4263 4807 3.557595 CGCTCCAATATTTCTGACTCCAC 59.442 47.826 0.00 0.00 0.00 4.02
4264 4808 3.557595 GCTCCAATATTTCTGACTCCACG 59.442 47.826 0.00 0.00 0.00 4.94
4265 4809 4.680708 GCTCCAATATTTCTGACTCCACGA 60.681 45.833 0.00 0.00 0.00 4.35
4266 4810 5.414789 TCCAATATTTCTGACTCCACGAA 57.585 39.130 0.00 0.00 0.00 3.85
4267 4811 5.419542 TCCAATATTTCTGACTCCACGAAG 58.580 41.667 0.00 0.00 0.00 3.79
4268 4812 4.034510 CCAATATTTCTGACTCCACGAAGC 59.965 45.833 0.00 0.00 0.00 3.86
4269 4813 4.744795 ATATTTCTGACTCCACGAAGCT 57.255 40.909 0.00 0.00 0.00 3.74
4270 4814 2.154854 TTTCTGACTCCACGAAGCTG 57.845 50.000 0.00 0.00 0.00 4.24
4271 4815 1.040646 TTCTGACTCCACGAAGCTGT 58.959 50.000 0.00 0.00 0.00 4.40
4272 4816 0.315251 TCTGACTCCACGAAGCTGTG 59.685 55.000 0.00 0.00 39.60 3.66
4284 4828 4.065110 GCTGTGGAGCTCGGTTTT 57.935 55.556 7.83 0.00 42.52 2.43
4285 4829 3.226884 GCTGTGGAGCTCGGTTTTA 57.773 52.632 7.83 0.00 42.52 1.52
4286 4830 1.079503 GCTGTGGAGCTCGGTTTTAG 58.920 55.000 7.83 1.51 42.52 1.85
4287 4831 1.079503 CTGTGGAGCTCGGTTTTAGC 58.920 55.000 7.83 0.00 40.40 3.09
4288 4832 0.321298 TGTGGAGCTCGGTTTTAGCC 60.321 55.000 7.83 0.00 41.02 3.93
4295 4839 4.278956 CGGTTTTAGCCGCTCTGT 57.721 55.556 0.00 0.00 45.47 3.41
4296 4840 1.787847 CGGTTTTAGCCGCTCTGTG 59.212 57.895 0.00 0.00 45.47 3.66
4297 4841 0.669318 CGGTTTTAGCCGCTCTGTGA 60.669 55.000 0.00 0.00 45.47 3.58
4298 4842 1.519408 GGTTTTAGCCGCTCTGTGAA 58.481 50.000 0.00 0.00 0.00 3.18
4299 4843 1.877443 GGTTTTAGCCGCTCTGTGAAA 59.123 47.619 0.00 0.00 0.00 2.69
4300 4844 2.292292 GGTTTTAGCCGCTCTGTGAAAA 59.708 45.455 0.00 0.00 0.00 2.29
4301 4845 3.057526 GGTTTTAGCCGCTCTGTGAAAAT 60.058 43.478 0.00 0.00 0.00 1.82
4302 4846 3.829886 TTTAGCCGCTCTGTGAAAATG 57.170 42.857 0.00 0.00 0.00 2.32
4303 4847 2.760634 TAGCCGCTCTGTGAAAATGA 57.239 45.000 0.00 0.00 0.00 2.57
4304 4848 1.446907 AGCCGCTCTGTGAAAATGAG 58.553 50.000 0.00 0.00 0.00 2.90
4305 4849 0.179179 GCCGCTCTGTGAAAATGAGC 60.179 55.000 0.00 0.00 46.73 4.26
4308 4852 2.259505 GCTCTGTGAAAATGAGCTGC 57.740 50.000 0.00 0.00 46.69 5.25
4309 4853 1.538512 GCTCTGTGAAAATGAGCTGCA 59.461 47.619 1.02 0.00 46.69 4.41
4310 4854 2.414293 GCTCTGTGAAAATGAGCTGCAG 60.414 50.000 10.11 10.11 46.69 4.41
4311 4855 1.538512 TCTGTGAAAATGAGCTGCAGC 59.461 47.619 31.53 31.53 42.49 5.25
4312 4856 0.599558 TGTGAAAATGAGCTGCAGCC 59.400 50.000 34.39 24.89 43.38 4.85
4313 4857 0.886563 GTGAAAATGAGCTGCAGCCT 59.113 50.000 34.39 21.60 43.38 4.58
4314 4858 0.885879 TGAAAATGAGCTGCAGCCTG 59.114 50.000 34.39 0.00 43.38 4.85
4315 4859 0.172803 GAAAATGAGCTGCAGCCTGG 59.827 55.000 34.39 0.00 43.38 4.45
4316 4860 0.541296 AAAATGAGCTGCAGCCTGGT 60.541 50.000 34.39 17.05 43.38 4.00
4317 4861 0.964358 AAATGAGCTGCAGCCTGGTC 60.964 55.000 34.39 24.67 43.38 4.02
4318 4862 2.833604 AATGAGCTGCAGCCTGGTCC 62.834 60.000 34.39 16.66 43.38 4.46
4342 4886 4.200283 GGAGCGCAGTCGAGGGAG 62.200 72.222 11.47 0.00 38.10 4.30
4343 4887 4.863925 GAGCGCAGTCGAGGGAGC 62.864 72.222 11.47 4.15 38.10 4.70
4349 4893 4.824515 AGTCGAGGGAGCGGGGAG 62.825 72.222 0.00 0.00 0.00 4.30
4353 4897 3.471806 GAGGGAGCGGGGAGGAAC 61.472 72.222 0.00 0.00 0.00 3.62
4356 4900 3.327404 GGAGCGGGGAGGAACCAA 61.327 66.667 0.00 0.00 41.20 3.67
4357 4901 2.754375 GAGCGGGGAGGAACCAAA 59.246 61.111 0.00 0.00 41.20 3.28
4358 4902 1.674651 GAGCGGGGAGGAACCAAAC 60.675 63.158 0.00 0.00 41.20 2.93
4359 4903 2.114411 GCGGGGAGGAACCAAACA 59.886 61.111 0.00 0.00 41.20 2.83
4360 4904 1.971695 GCGGGGAGGAACCAAACAG 60.972 63.158 0.00 0.00 41.20 3.16
4361 4905 1.303317 CGGGGAGGAACCAAACAGG 60.303 63.158 0.00 0.00 45.67 4.00
4362 4906 1.606601 GGGGAGGAACCAAACAGGC 60.607 63.158 0.00 0.00 43.14 4.85
4363 4907 1.460699 GGGAGGAACCAAACAGGCT 59.539 57.895 0.00 0.00 43.14 4.58
4364 4908 0.609406 GGGAGGAACCAAACAGGCTC 60.609 60.000 0.00 0.00 43.14 4.70
4394 4948 7.791029 TCTTGATGTAGCAGGTCATATGTAAA 58.209 34.615 1.90 0.00 0.00 2.01
4403 4961 4.991056 CAGGTCATATGTAAAGGATGGACG 59.009 45.833 1.90 0.00 0.00 4.79
4445 5003 2.491621 GAGCGGGGCATTGCTTTC 59.508 61.111 8.82 0.00 42.60 2.62
4446 5004 2.283101 AGCGGGGCATTGCTTTCA 60.283 55.556 8.82 0.00 38.57 2.69
4447 5005 1.876497 GAGCGGGGCATTGCTTTCAA 61.876 55.000 8.82 0.00 42.60 2.69
4448 5006 1.446618 GCGGGGCATTGCTTTCAAG 60.447 57.895 8.82 0.00 35.37 3.02
4449 5007 1.966762 CGGGGCATTGCTTTCAAGT 59.033 52.632 8.82 0.00 35.37 3.16
4450 5008 0.109132 CGGGGCATTGCTTTCAAGTC 60.109 55.000 8.82 0.00 35.37 3.01
4451 5009 0.968405 GGGGCATTGCTTTCAAGTCA 59.032 50.000 8.82 0.00 35.37 3.41
4452 5010 1.337167 GGGGCATTGCTTTCAAGTCAC 60.337 52.381 8.82 0.00 35.37 3.67
4453 5011 1.666888 GGGCATTGCTTTCAAGTCACG 60.667 52.381 8.82 0.00 35.37 4.35
4454 5012 1.666888 GGCATTGCTTTCAAGTCACGG 60.667 52.381 8.82 0.00 35.37 4.94
4455 5013 1.001378 GCATTGCTTTCAAGTCACGGT 60.001 47.619 0.16 0.00 35.37 4.83
4456 5014 2.918131 GCATTGCTTTCAAGTCACGGTC 60.918 50.000 0.16 0.00 35.37 4.79
4457 5015 2.031258 TTGCTTTCAAGTCACGGTCA 57.969 45.000 0.00 0.00 0.00 4.02
4458 5016 2.254546 TGCTTTCAAGTCACGGTCAT 57.745 45.000 0.00 0.00 0.00 3.06
4459 5017 3.394674 TGCTTTCAAGTCACGGTCATA 57.605 42.857 0.00 0.00 0.00 2.15
4460 5018 3.937814 TGCTTTCAAGTCACGGTCATAT 58.062 40.909 0.00 0.00 0.00 1.78
4461 5019 3.684305 TGCTTTCAAGTCACGGTCATATG 59.316 43.478 0.00 0.00 0.00 1.78
4462 5020 3.684788 GCTTTCAAGTCACGGTCATATGT 59.315 43.478 1.90 0.00 0.00 2.29
4463 5021 4.868171 GCTTTCAAGTCACGGTCATATGTA 59.132 41.667 1.90 0.00 0.00 2.29
4464 5022 5.350365 GCTTTCAAGTCACGGTCATATGTAA 59.650 40.000 1.90 0.00 0.00 2.41
4465 5023 6.128391 GCTTTCAAGTCACGGTCATATGTAAA 60.128 38.462 1.90 0.00 0.00 2.01
4466 5024 6.961359 TTCAAGTCACGGTCATATGTAAAG 57.039 37.500 1.90 0.00 0.00 1.85
4467 5025 5.416083 TCAAGTCACGGTCATATGTAAAGG 58.584 41.667 1.90 0.00 0.00 3.11
4468 5026 5.046878 TCAAGTCACGGTCATATGTAAAGGT 60.047 40.000 1.90 0.00 0.00 3.50
4469 5027 4.755411 AGTCACGGTCATATGTAAAGGTG 58.245 43.478 1.90 5.85 0.00 4.00
4470 5028 3.869246 GTCACGGTCATATGTAAAGGTGG 59.131 47.826 1.90 0.00 0.00 4.61
4471 5029 3.516300 TCACGGTCATATGTAAAGGTGGT 59.484 43.478 1.90 0.00 0.00 4.16
4472 5030 4.020039 TCACGGTCATATGTAAAGGTGGTT 60.020 41.667 1.90 0.00 0.00 3.67
4473 5031 5.187381 TCACGGTCATATGTAAAGGTGGTTA 59.813 40.000 1.90 0.00 0.00 2.85
4474 5032 5.292589 CACGGTCATATGTAAAGGTGGTTAC 59.707 44.000 1.90 0.00 35.02 2.50
4475 5033 4.505191 CGGTCATATGTAAAGGTGGTTACG 59.495 45.833 1.90 0.00 36.87 3.18
4476 5034 5.663456 GGTCATATGTAAAGGTGGTTACGA 58.337 41.667 1.90 0.00 36.87 3.43
4477 5035 6.285990 GGTCATATGTAAAGGTGGTTACGAT 58.714 40.000 1.90 0.00 36.87 3.73
4478 5036 6.423001 GGTCATATGTAAAGGTGGTTACGATC 59.577 42.308 1.90 0.00 36.87 3.69
4479 5037 6.982141 GTCATATGTAAAGGTGGTTACGATCA 59.018 38.462 1.90 0.00 36.87 2.92
4480 5038 7.656137 GTCATATGTAAAGGTGGTTACGATCAT 59.344 37.037 1.90 0.00 36.87 2.45
4481 5039 8.862085 TCATATGTAAAGGTGGTTACGATCATA 58.138 33.333 1.90 0.00 36.87 2.15
4482 5040 9.140286 CATATGTAAAGGTGGTTACGATCATAG 57.860 37.037 0.00 0.00 36.87 2.23
4483 5041 5.353938 TGTAAAGGTGGTTACGATCATAGC 58.646 41.667 0.00 0.00 36.87 2.97
4484 5042 4.481368 AAAGGTGGTTACGATCATAGCA 57.519 40.909 0.00 0.00 0.00 3.49
4485 5043 3.735237 AGGTGGTTACGATCATAGCAG 57.265 47.619 0.00 0.00 0.00 4.24
4486 5044 2.135933 GGTGGTTACGATCATAGCAGC 58.864 52.381 0.00 0.00 0.00 5.25
4487 5045 2.135933 GTGGTTACGATCATAGCAGCC 58.864 52.381 0.00 0.00 0.00 4.85
4488 5046 1.269569 TGGTTACGATCATAGCAGCCG 60.270 52.381 0.00 0.00 0.00 5.52
4489 5047 1.269621 GGTTACGATCATAGCAGCCGT 60.270 52.381 0.00 0.00 37.27 5.68
4490 5048 2.052157 GTTACGATCATAGCAGCCGTC 58.948 52.381 0.00 0.00 35.05 4.79
4491 5049 0.596577 TACGATCATAGCAGCCGTCC 59.403 55.000 0.00 0.00 35.05 4.79
4492 5050 1.363807 CGATCATAGCAGCCGTCCA 59.636 57.895 0.00 0.00 0.00 4.02
4500 5058 2.270205 CAGCCGTCCATTGCTCCT 59.730 61.111 0.00 0.00 35.12 3.69
4502 5060 2.045926 GCCGTCCATTGCTCCTGT 60.046 61.111 0.00 0.00 0.00 4.00
4508 5066 0.770499 TCCATTGCTCCTGTGGTTCA 59.230 50.000 0.00 0.00 34.61 3.18
4515 5073 4.299586 TGCTCCTGTGGTTCAATAATCA 57.700 40.909 0.00 0.00 0.00 2.57
4516 5074 4.009675 TGCTCCTGTGGTTCAATAATCAC 58.990 43.478 0.00 0.00 45.38 3.06
4524 5082 5.414454 TGTGGTTCAATAATCACTGGCTAAC 59.586 40.000 3.45 0.00 45.39 2.34
4527 5085 7.282224 GTGGTTCAATAATCACTGGCTAACATA 59.718 37.037 0.00 0.00 42.45 2.29
4548 5106 0.867746 TGATCAGTGCGCTTGTGTTC 59.132 50.000 9.73 8.44 0.00 3.18
4553 5111 0.748005 AGTGCGCTTGTGTTCCAGTT 60.748 50.000 9.73 0.00 0.00 3.16
4559 5117 1.885887 GCTTGTGTTCCAGTTATGCCA 59.114 47.619 0.00 0.00 0.00 4.92
4565 5123 4.022416 TGTGTTCCAGTTATGCCAACATTC 60.022 41.667 1.64 0.00 37.74 2.67
4604 5162 2.791868 GGCGGCCAAACAAGTGGTT 61.792 57.895 15.62 0.00 42.98 3.67
4608 5166 1.883275 CGGCCAAACAAGTGGTTATGA 59.117 47.619 2.24 0.00 39.29 2.15
4611 5174 3.306019 GGCCAAACAAGTGGTTATGAAGG 60.306 47.826 0.00 0.00 39.29 3.46
4624 5187 6.096846 GTGGTTATGAAGGCAATGAATACCTT 59.903 38.462 0.00 0.00 46.43 3.50
4639 5202 1.370064 CCTTCACGAAGACCCGGTT 59.630 57.895 8.38 0.00 40.79 4.44
4642 5205 0.464870 TTCACGAAGACCCGGTTCAA 59.535 50.000 0.39 0.00 0.00 2.69
4643 5206 0.032952 TCACGAAGACCCGGTTCAAG 59.967 55.000 0.39 0.00 0.00 3.02
4658 5221 2.920912 AAGGGTTGCCGGACTCGA 60.921 61.111 5.05 0.00 39.00 4.04
4659 5222 2.291043 AAGGGTTGCCGGACTCGAT 61.291 57.895 5.05 0.00 39.00 3.59
4660 5223 2.202892 GGGTTGCCGGACTCGATC 60.203 66.667 5.05 0.00 39.00 3.69
4661 5224 2.582498 GGTTGCCGGACTCGATCG 60.582 66.667 5.05 9.36 39.00 3.69
4662 5225 2.488355 GTTGCCGGACTCGATCGA 59.512 61.111 18.32 18.32 39.00 3.59
4663 5226 1.586564 GTTGCCGGACTCGATCGAG 60.587 63.158 36.95 36.95 46.91 4.04
4664 5227 2.771639 TTGCCGGACTCGATCGAGG 61.772 63.158 39.70 27.79 45.88 4.63
4665 5228 2.900838 GCCGGACTCGATCGAGGA 60.901 66.667 39.70 12.19 45.88 3.71
4666 5229 2.478890 GCCGGACTCGATCGAGGAA 61.479 63.158 39.70 11.82 45.88 3.36
4667 5230 1.797211 GCCGGACTCGATCGAGGAAT 61.797 60.000 39.70 24.84 45.88 3.01
4668 5231 0.669077 CCGGACTCGATCGAGGAATT 59.331 55.000 39.70 24.50 45.88 2.17
4672 5235 4.159857 CGGACTCGATCGAGGAATTAATC 58.840 47.826 39.70 27.90 45.88 1.75
4708 5275 0.867753 CTTGGCGTGCTAGCTAGACG 60.868 60.000 27.18 27.18 37.29 4.18
4728 5295 3.197434 GTTAGGGCAACAACGATCAAC 57.803 47.619 0.00 0.00 37.09 3.18
4733 5300 1.812571 GGCAACAACGATCAACCATCT 59.187 47.619 0.00 0.00 0.00 2.90
4742 5309 2.726821 GATCAACCATCTTGGAGGCAA 58.273 47.619 0.00 0.00 40.96 4.52
4756 5323 3.133464 GCAACGGCCATGCAGCTA 61.133 61.111 22.14 0.00 43.29 3.32
4757 5324 3.104766 CAACGGCCATGCAGCTAG 58.895 61.111 2.24 0.00 0.00 3.42
4758 5325 2.825836 AACGGCCATGCAGCTAGC 60.826 61.111 6.62 6.62 45.96 3.42
4777 5344 2.475466 GCACCTCATCACGCCATGG 61.475 63.158 7.63 7.63 0.00 3.66
4787 5354 2.268076 ACGCCATGGTTGCAACTCC 61.268 57.895 27.64 14.03 0.00 3.85
4789 5356 1.290009 GCCATGGTTGCAACTCCAC 59.710 57.895 27.64 12.57 36.50 4.02
4814 5381 1.983972 CCTTGACACACGAGTAGCTC 58.016 55.000 0.00 0.00 0.00 4.09
4839 5412 1.059979 CAATGCATGCACACATTTCGC 59.940 47.619 25.37 0.00 34.32 4.70
4842 5415 0.109643 GCATGCACACATTTCGCTCA 60.110 50.000 14.21 0.00 32.87 4.26
4844 5417 2.871133 CATGCACACATTTCGCTCATT 58.129 42.857 0.00 0.00 32.87 2.57
4850 5423 4.787563 GCACACATTTCGCTCATTCCATAG 60.788 45.833 0.00 0.00 0.00 2.23
4889 5462 2.653234 ATGGAGAACATGGGCTCATC 57.347 50.000 15.97 0.00 38.70 2.92
4890 5463 1.588239 TGGAGAACATGGGCTCATCT 58.412 50.000 15.97 0.00 32.83 2.90
4891 5464 1.918262 TGGAGAACATGGGCTCATCTT 59.082 47.619 15.97 0.00 32.83 2.40
4892 5465 2.092753 TGGAGAACATGGGCTCATCTTC 60.093 50.000 6.47 6.47 31.25 2.87
4893 5466 2.570135 GAGAACATGGGCTCATCTTCC 58.430 52.381 10.62 0.11 31.38 3.46
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 41 4.437524 GGGAAGAGCACGCTTCTTTTATTC 60.438 45.833 12.81 0.00 42.96 1.75
41 42 3.440522 GGGAAGAGCACGCTTCTTTTATT 59.559 43.478 12.81 0.00 42.96 1.40
42 43 3.010420 GGGAAGAGCACGCTTCTTTTAT 58.990 45.455 12.81 0.00 42.96 1.40
43 44 2.224426 TGGGAAGAGCACGCTTCTTTTA 60.224 45.455 12.81 0.00 42.96 1.52
44 45 1.239347 GGGAAGAGCACGCTTCTTTT 58.761 50.000 12.81 0.00 42.96 2.27
45 46 0.108585 TGGGAAGAGCACGCTTCTTT 59.891 50.000 12.81 0.00 42.96 2.52
46 47 0.321122 CTGGGAAGAGCACGCTTCTT 60.321 55.000 12.81 6.50 42.96 2.52
47 48 1.294780 CTGGGAAGAGCACGCTTCT 59.705 57.895 12.81 0.00 42.96 2.85
64 65 4.666512 ACATGCCTCACAAAAGGATAACT 58.333 39.130 0.00 0.00 38.87 2.24
81 82 3.618690 AGGTCAGGTAGAAGAACATGC 57.381 47.619 0.00 0.00 31.40 4.06
93 94 2.831526 ACAACAAAGCAAAAGGTCAGGT 59.168 40.909 0.00 0.00 0.00 4.00
98 99 3.068165 GCTAGGACAACAAAGCAAAAGGT 59.932 43.478 0.00 0.00 35.05 3.50
112 113 2.875672 GCATTTGTCAGTGGCTAGGACA 60.876 50.000 0.00 0.97 39.60 4.02
176 180 1.956170 CACGACCAAGAACGCAGCT 60.956 57.895 0.00 0.00 0.00 4.24
244 250 1.866015 ATCCCTGCTGCTGTACACTA 58.134 50.000 0.00 0.00 0.00 2.74
247 253 1.279496 AGAATCCCTGCTGCTGTACA 58.721 50.000 0.00 0.00 0.00 2.90
250 256 2.299326 AAAAGAATCCCTGCTGCTGT 57.701 45.000 0.00 0.00 0.00 4.40
333 339 8.381636 AGATCATTAGAATCACCTGGGAATAAG 58.618 37.037 0.00 0.00 0.00 1.73
367 373 5.398603 TTGAGAACAAACACAACCACATT 57.601 34.783 0.00 0.00 32.73 2.71
411 418 7.228706 GGGAAGGTTCGTCATCATACAATTTAT 59.771 37.037 0.00 0.00 0.00 1.40
459 481 6.158598 CACATACTTGATGGAAAACAAAGGG 58.841 40.000 0.00 0.00 40.18 3.95
512 534 6.127591 CCTCTAAGGTTTCGATTGAGAAGAGA 60.128 42.308 11.64 0.00 0.00 3.10
523 545 1.217244 GCGCCCTCTAAGGTTTCGA 59.783 57.895 0.00 0.00 31.93 3.71
769 963 1.634459 TGAGAACTACTCCCTCCGTCT 59.366 52.381 0.00 0.00 44.34 4.18
773 967 9.549078 CTTAATATTTTGAGAACTACTCCCTCC 57.451 37.037 0.00 0.00 44.34 4.30
804 998 1.964223 GGAAGAGCATCCATCCTACGA 59.036 52.381 0.00 0.00 38.28 3.43
874 1068 3.965888 GGAACTTCTCCATGTGCCT 57.034 52.632 0.00 0.00 44.67 4.75
890 1088 1.832167 GTGCACAAAGCCTTGGGGA 60.832 57.895 13.17 0.00 44.83 4.81
930 1179 3.058160 CAAGAGGCAAGGCACGGG 61.058 66.667 0.00 0.00 0.00 5.28
949 1198 3.390967 TGTGGGACAGAATTTCAGTCAGA 59.609 43.478 19.62 6.26 41.80 3.27
1114 1388 0.811281 GCTGGAGTTGTACATTGCCC 59.189 55.000 0.00 0.00 0.00 5.36
1141 1430 4.328712 TGACGTTGTTGATGATAATGTCGG 59.671 41.667 0.00 0.00 44.06 4.79
1148 1437 2.990514 CACCGTGACGTTGTTGATGATA 59.009 45.455 3.64 0.00 0.00 2.15
1226 1516 4.148825 ATGAGCCGCTCGGTGGTC 62.149 66.667 15.58 5.52 35.34 4.02
2061 2374 4.096003 ATACCGGCGCCAACTGCT 62.096 61.111 28.98 1.86 38.05 4.24
2186 2505 4.079787 CCTTCCCATTTGGACTTCCATCTA 60.080 45.833 0.00 0.00 46.97 1.98
2393 2739 1.734359 GACGAGATCGCGTGCTTGTC 61.734 60.000 29.15 24.51 45.72 3.18
2833 3191 1.135139 CACGATGAACCAGTCGGAGAT 59.865 52.381 0.00 0.00 41.87 2.75
2838 3196 1.071019 CGGACACGATGAACCAGTCG 61.071 60.000 0.00 0.00 44.60 4.18
2868 3226 0.249996 GCATGGGCATTTGGGCATAC 60.250 55.000 0.00 0.00 45.66 2.39
2876 3234 2.114670 CGTCGGAGCATGGGCATTT 61.115 57.895 0.00 0.00 44.61 2.32
2937 3295 3.064324 GCATGGGAGCGGTGCTTT 61.064 61.111 5.98 0.00 39.88 3.51
2952 3310 0.535335 GGTAGACCTTGATGACGGCA 59.465 55.000 0.00 0.00 0.00 5.69
2968 3326 1.278985 CTTGAGCATGGTGACCTGGTA 59.721 52.381 0.00 0.00 0.00 3.25
3036 3394 2.676822 ACGAGGCGCCTCTTGAGA 60.677 61.111 44.11 0.00 40.69 3.27
3178 3536 1.202806 CCACTTGAGGTTGAGGAAGCA 60.203 52.381 0.00 0.00 31.56 3.91
3186 3544 2.908073 GCACGCCCACTTGAGGTTG 61.908 63.158 0.00 0.00 0.00 3.77
3222 3580 3.797039 CCACACCACTATCATCGTTGAT 58.203 45.455 13.25 13.25 44.76 2.57
3223 3581 2.676750 GCCACACCACTATCATCGTTGA 60.677 50.000 0.00 0.00 36.00 3.18
3228 3586 2.401583 TGTGCCACACCACTATCATC 57.598 50.000 0.00 0.00 36.68 2.92
3573 3958 0.603569 TCTCGTCCTCAAGCAAGTCC 59.396 55.000 0.00 0.00 0.00 3.85
3793 4178 3.245016 TGAGCCTGTGATCAAACTGGATT 60.245 43.478 11.92 1.54 40.60 3.01
3910 4370 8.922931 ACATTACATGATTATATGCCAACTGA 57.077 30.769 0.00 0.00 0.00 3.41
3923 4383 7.750458 CGTCTTGTGCTAAAACATTACATGATT 59.250 33.333 0.00 0.00 31.21 2.57
3937 4397 4.237724 CATCTCAACTCGTCTTGTGCTAA 58.762 43.478 0.00 0.00 0.00 3.09
3995 4472 8.689061 TGTCTCCATCAAGATCAAATATTTTGG 58.311 33.333 0.00 1.66 0.00 3.28
4032 4509 6.887013 AGTAGCTCTGTGATTTCATCAGATT 58.113 36.000 0.00 7.37 40.53 2.40
4035 4512 5.904941 AGAGTAGCTCTGTGATTTCATCAG 58.095 41.667 0.00 4.69 39.62 2.90
4092 4628 2.751806 CCTTGCCCAGATCTCAGTTTTC 59.248 50.000 0.00 0.00 0.00 2.29
4119 4655 2.957006 CCTCAGCCTAGTGTTATACGGT 59.043 50.000 0.00 0.00 0.00 4.83
4125 4661 4.530875 GGTAGTACCTCAGCCTAGTGTTA 58.469 47.826 12.41 0.00 34.73 2.41
4128 4664 2.308690 GGGTAGTACCTCAGCCTAGTG 58.691 57.143 18.85 0.00 38.64 2.74
4129 4665 1.928077 TGGGTAGTACCTCAGCCTAGT 59.072 52.381 18.85 0.00 38.64 2.57
4130 4666 2.588620 CTGGGTAGTACCTCAGCCTAG 58.411 57.143 18.85 0.00 38.64 3.02
4131 4667 2.750141 CTGGGTAGTACCTCAGCCTA 57.250 55.000 18.85 0.00 38.64 3.93
4132 4668 3.617535 CTGGGTAGTACCTCAGCCT 57.382 57.895 18.85 0.00 38.64 4.58
4135 4671 0.032017 AGGGCTGGGTAGTACCTCAG 60.032 60.000 23.39 23.39 38.64 3.35
4136 4672 0.325296 CAGGGCTGGGTAGTACCTCA 60.325 60.000 18.85 13.48 38.64 3.86
4137 4673 1.049289 CCAGGGCTGGGTAGTACCTC 61.049 65.000 18.85 9.69 46.81 3.85
4138 4674 1.003051 CCAGGGCTGGGTAGTACCT 59.997 63.158 18.85 0.00 46.81 3.08
4139 4675 3.643398 CCAGGGCTGGGTAGTACC 58.357 66.667 11.20 11.20 46.81 3.34
4148 4684 0.824759 GTGAGGTAGTACCAGGGCTG 59.175 60.000 21.49 0.00 41.95 4.85
4149 4685 0.711184 AGTGAGGTAGTACCAGGGCT 59.289 55.000 21.49 10.35 41.95 5.19
4150 4686 2.308690 CTAGTGAGGTAGTACCAGGGC 58.691 57.143 21.49 8.33 41.95 5.19
4151 4687 2.946785 CCTAGTGAGGTAGTACCAGGG 58.053 57.143 21.49 9.36 41.95 4.45
4152 4688 2.091775 AGCCTAGTGAGGTAGTACCAGG 60.092 54.545 21.49 18.07 45.78 4.45
4153 4689 2.952978 CAGCCTAGTGAGGTAGTACCAG 59.047 54.545 21.49 9.14 45.78 4.00
4154 4690 2.357881 CCAGCCTAGTGAGGTAGTACCA 60.358 54.545 21.49 0.00 45.78 3.25
4155 4691 2.308690 CCAGCCTAGTGAGGTAGTACC 58.691 57.143 11.73 11.73 45.78 3.34
4156 4692 2.308690 CCCAGCCTAGTGAGGTAGTAC 58.691 57.143 0.00 0.00 45.78 2.73
4157 4693 1.928077 ACCCAGCCTAGTGAGGTAGTA 59.072 52.381 0.00 0.00 45.78 1.82
4158 4694 0.711184 ACCCAGCCTAGTGAGGTAGT 59.289 55.000 0.00 0.00 45.78 2.73
4159 4695 1.867363 AACCCAGCCTAGTGAGGTAG 58.133 55.000 0.00 0.00 45.78 3.18
4160 4696 3.052414 TGATAACCCAGCCTAGTGAGGTA 60.052 47.826 0.00 0.00 45.78 3.08
4161 4697 2.292918 TGATAACCCAGCCTAGTGAGGT 60.293 50.000 0.00 0.00 45.78 3.85
4162 4698 2.398588 TGATAACCCAGCCTAGTGAGG 58.601 52.381 0.00 0.00 46.93 3.86
4163 4699 3.900601 AGATGATAACCCAGCCTAGTGAG 59.099 47.826 0.00 0.00 0.00 3.51
4164 4700 3.928754 AGATGATAACCCAGCCTAGTGA 58.071 45.455 0.00 0.00 0.00 3.41
4180 4716 1.208052 GCTTGCTGGGTGAGTAGATGA 59.792 52.381 0.00 0.00 0.00 2.92
4205 4749 4.905456 TCCGGACAGGACCTAAATGAATAT 59.095 41.667 0.00 0.00 45.98 1.28
4226 4770 0.387565 GAGCGGAGTGGAGAGATTCC 59.612 60.000 0.00 0.00 46.98 3.01
4227 4771 0.387565 GGAGCGGAGTGGAGAGATTC 59.612 60.000 0.00 0.00 0.00 2.52
4228 4772 0.324738 TGGAGCGGAGTGGAGAGATT 60.325 55.000 0.00 0.00 0.00 2.40
4229 4773 0.324738 TTGGAGCGGAGTGGAGAGAT 60.325 55.000 0.00 0.00 0.00 2.75
4230 4774 0.324738 ATTGGAGCGGAGTGGAGAGA 60.325 55.000 0.00 0.00 0.00 3.10
4231 4775 1.403814 TATTGGAGCGGAGTGGAGAG 58.596 55.000 0.00 0.00 0.00 3.20
4232 4776 2.088104 ATATTGGAGCGGAGTGGAGA 57.912 50.000 0.00 0.00 0.00 3.71
4233 4777 2.918712 AATATTGGAGCGGAGTGGAG 57.081 50.000 0.00 0.00 0.00 3.86
4234 4778 2.771943 AGAAATATTGGAGCGGAGTGGA 59.228 45.455 0.00 0.00 0.00 4.02
4235 4779 2.874701 CAGAAATATTGGAGCGGAGTGG 59.125 50.000 0.00 0.00 0.00 4.00
4236 4780 3.557595 GTCAGAAATATTGGAGCGGAGTG 59.442 47.826 0.00 0.00 0.00 3.51
4237 4781 3.452627 AGTCAGAAATATTGGAGCGGAGT 59.547 43.478 0.00 0.00 0.00 3.85
4238 4782 4.054671 GAGTCAGAAATATTGGAGCGGAG 58.945 47.826 0.00 0.00 0.00 4.63
4239 4783 3.181465 GGAGTCAGAAATATTGGAGCGGA 60.181 47.826 0.00 0.00 0.00 5.54
4240 4784 3.134458 GGAGTCAGAAATATTGGAGCGG 58.866 50.000 0.00 0.00 0.00 5.52
4241 4785 3.557595 GTGGAGTCAGAAATATTGGAGCG 59.442 47.826 0.00 0.00 0.00 5.03
4242 4786 3.557595 CGTGGAGTCAGAAATATTGGAGC 59.442 47.826 0.00 0.00 0.00 4.70
4243 4787 5.011090 TCGTGGAGTCAGAAATATTGGAG 57.989 43.478 0.00 0.00 0.00 3.86
4244 4788 5.414789 TTCGTGGAGTCAGAAATATTGGA 57.585 39.130 0.00 0.00 0.00 3.53
4245 4789 4.034510 GCTTCGTGGAGTCAGAAATATTGG 59.965 45.833 0.00 0.00 0.00 3.16
4246 4790 4.872691 AGCTTCGTGGAGTCAGAAATATTG 59.127 41.667 0.00 0.00 0.00 1.90
4247 4791 4.872691 CAGCTTCGTGGAGTCAGAAATATT 59.127 41.667 0.00 0.00 0.00 1.28
4248 4792 4.081420 ACAGCTTCGTGGAGTCAGAAATAT 60.081 41.667 0.00 0.00 0.00 1.28
4249 4793 3.258372 ACAGCTTCGTGGAGTCAGAAATA 59.742 43.478 0.00 0.00 0.00 1.40
4250 4794 2.037772 ACAGCTTCGTGGAGTCAGAAAT 59.962 45.455 0.00 0.00 0.00 2.17
4251 4795 1.412710 ACAGCTTCGTGGAGTCAGAAA 59.587 47.619 0.00 0.00 0.00 2.52
4252 4796 1.040646 ACAGCTTCGTGGAGTCAGAA 58.959 50.000 0.00 0.00 0.00 3.02
4253 4797 0.315251 CACAGCTTCGTGGAGTCAGA 59.685 55.000 0.00 0.00 33.05 3.27
4254 4798 2.819667 CACAGCTTCGTGGAGTCAG 58.180 57.895 0.00 0.00 33.05 3.51
4268 4812 1.079503 GCTAAAACCGAGCTCCACAG 58.920 55.000 8.47 0.00 36.96 3.66
4269 4813 0.321298 GGCTAAAACCGAGCTCCACA 60.321 55.000 8.47 0.00 39.98 4.17
4270 4814 2.467962 GGCTAAAACCGAGCTCCAC 58.532 57.895 8.47 0.00 39.98 4.02
4279 4823 1.519408 TTCACAGAGCGGCTAAAACC 58.481 50.000 0.60 0.00 0.00 3.27
4280 4824 3.619233 TTTTCACAGAGCGGCTAAAAC 57.381 42.857 0.60 0.00 0.00 2.43
4281 4825 3.818210 TCATTTTCACAGAGCGGCTAAAA 59.182 39.130 0.60 6.27 0.00 1.52
4282 4826 3.407698 TCATTTTCACAGAGCGGCTAAA 58.592 40.909 0.60 0.00 0.00 1.85
4283 4827 3.002791 CTCATTTTCACAGAGCGGCTAA 58.997 45.455 0.60 0.00 0.00 3.09
4284 4828 2.621338 CTCATTTTCACAGAGCGGCTA 58.379 47.619 0.60 0.00 0.00 3.93
4285 4829 1.446907 CTCATTTTCACAGAGCGGCT 58.553 50.000 0.00 0.00 0.00 5.52
4286 4830 0.179179 GCTCATTTTCACAGAGCGGC 60.179 55.000 0.00 0.00 44.37 6.53
4287 4831 3.984292 GCTCATTTTCACAGAGCGG 57.016 52.632 0.00 0.00 44.37 5.52
4290 4834 2.414293 GCTGCAGCTCATTTTCACAGAG 60.414 50.000 31.33 0.00 38.21 3.35
4291 4835 1.538512 GCTGCAGCTCATTTTCACAGA 59.461 47.619 31.33 0.00 38.21 3.41
4292 4836 1.402456 GGCTGCAGCTCATTTTCACAG 60.402 52.381 35.82 0.00 41.70 3.66
4293 4837 0.599558 GGCTGCAGCTCATTTTCACA 59.400 50.000 35.82 0.00 41.70 3.58
4294 4838 0.886563 AGGCTGCAGCTCATTTTCAC 59.113 50.000 35.82 17.24 41.70 3.18
4295 4839 0.885879 CAGGCTGCAGCTCATTTTCA 59.114 50.000 35.82 0.00 41.70 2.69
4296 4840 0.172803 CCAGGCTGCAGCTCATTTTC 59.827 55.000 35.82 18.70 41.70 2.29
4297 4841 0.541296 ACCAGGCTGCAGCTCATTTT 60.541 50.000 35.82 14.49 41.70 1.82
4298 4842 0.964358 GACCAGGCTGCAGCTCATTT 60.964 55.000 35.82 17.95 41.70 2.32
4299 4843 1.378250 GACCAGGCTGCAGCTCATT 60.378 57.895 35.82 19.37 41.70 2.57
4300 4844 2.271497 GACCAGGCTGCAGCTCAT 59.729 61.111 35.82 20.52 41.70 2.90
4301 4845 4.025858 GGACCAGGCTGCAGCTCA 62.026 66.667 35.82 0.00 41.70 4.26
4325 4869 4.200283 CTCCCTCGACTGCGCTCC 62.200 72.222 9.73 0.00 37.46 4.70
4326 4870 4.863925 GCTCCCTCGACTGCGCTC 62.864 72.222 9.73 0.00 37.46 5.03
4332 4876 4.824515 CTCCCCGCTCCCTCGACT 62.825 72.222 0.00 0.00 0.00 4.18
4336 4880 3.471806 GTTCCTCCCCGCTCCCTC 61.472 72.222 0.00 0.00 0.00 4.30
4339 4883 2.902457 TTTGGTTCCTCCCCGCTCC 61.902 63.158 0.00 0.00 34.77 4.70
4340 4884 1.674651 GTTTGGTTCCTCCCCGCTC 60.675 63.158 0.00 0.00 34.77 5.03
4341 4885 2.411765 CTGTTTGGTTCCTCCCCGCT 62.412 60.000 0.00 0.00 34.77 5.52
4342 4886 1.971695 CTGTTTGGTTCCTCCCCGC 60.972 63.158 0.00 0.00 34.77 6.13
4343 4887 1.303317 CCTGTTTGGTTCCTCCCCG 60.303 63.158 0.00 0.00 34.77 5.73
4344 4888 1.606601 GCCTGTTTGGTTCCTCCCC 60.607 63.158 0.00 0.00 38.35 4.81
4345 4889 0.609406 GAGCCTGTTTGGTTCCTCCC 60.609 60.000 0.00 0.00 39.78 4.30
4346 4890 0.402121 AGAGCCTGTTTGGTTCCTCC 59.598 55.000 0.00 0.00 45.82 4.30
4347 4891 2.278332 AAGAGCCTGTTTGGTTCCTC 57.722 50.000 0.00 0.00 45.82 3.71
4348 4892 3.876309 TTAAGAGCCTGTTTGGTTCCT 57.124 42.857 0.00 0.00 45.82 3.36
4349 4893 4.336280 AGATTAAGAGCCTGTTTGGTTCC 58.664 43.478 0.00 0.00 45.82 3.62
4350 4894 5.473504 TCAAGATTAAGAGCCTGTTTGGTTC 59.526 40.000 0.00 0.00 45.13 3.62
4351 4895 5.385198 TCAAGATTAAGAGCCTGTTTGGTT 58.615 37.500 0.00 0.00 38.35 3.67
4352 4896 4.985538 TCAAGATTAAGAGCCTGTTTGGT 58.014 39.130 0.00 0.00 38.35 3.67
4353 4897 5.416952 ACATCAAGATTAAGAGCCTGTTTGG 59.583 40.000 0.00 0.00 39.35 3.28
4354 4898 6.506500 ACATCAAGATTAAGAGCCTGTTTG 57.493 37.500 0.00 0.00 0.00 2.93
4355 4899 6.317391 GCTACATCAAGATTAAGAGCCTGTTT 59.683 38.462 0.00 0.00 0.00 2.83
4356 4900 5.819901 GCTACATCAAGATTAAGAGCCTGTT 59.180 40.000 0.00 0.00 0.00 3.16
4357 4901 5.104776 TGCTACATCAAGATTAAGAGCCTGT 60.105 40.000 0.00 0.00 0.00 4.00
4358 4902 5.363101 TGCTACATCAAGATTAAGAGCCTG 58.637 41.667 0.00 0.00 0.00 4.85
4359 4903 5.454471 CCTGCTACATCAAGATTAAGAGCCT 60.454 44.000 0.00 0.00 0.00 4.58
4360 4904 4.754114 CCTGCTACATCAAGATTAAGAGCC 59.246 45.833 0.00 0.00 0.00 4.70
4361 4905 5.363939 ACCTGCTACATCAAGATTAAGAGC 58.636 41.667 0.00 0.00 0.00 4.09
4362 4906 6.577103 TGACCTGCTACATCAAGATTAAGAG 58.423 40.000 0.00 0.00 0.00 2.85
4363 4907 6.544928 TGACCTGCTACATCAAGATTAAGA 57.455 37.500 0.00 0.00 0.00 2.10
4364 4908 8.933807 CATATGACCTGCTACATCAAGATTAAG 58.066 37.037 0.00 0.00 0.00 1.85
4394 4948 4.094887 CGTGATTTGAAAATCGTCCATCCT 59.905 41.667 10.37 0.00 46.01 3.24
4403 4961 4.447389 CACCCAAACCGTGATTTGAAAATC 59.553 41.667 8.53 8.53 41.28 2.17
4437 4995 2.571212 TGACCGTGACTTGAAAGCAAT 58.429 42.857 0.00 0.00 32.68 3.56
4439 4997 2.254546 ATGACCGTGACTTGAAAGCA 57.745 45.000 0.00 0.00 0.00 3.91
4445 5003 5.063438 CACCTTTACATATGACCGTGACTTG 59.937 44.000 10.38 0.00 0.00 3.16
4446 5004 5.175859 CACCTTTACATATGACCGTGACTT 58.824 41.667 10.38 0.00 0.00 3.01
4447 5005 4.382685 CCACCTTTACATATGACCGTGACT 60.383 45.833 10.38 0.00 0.00 3.41
4448 5006 3.869246 CCACCTTTACATATGACCGTGAC 59.131 47.826 10.38 0.00 0.00 3.67
4449 5007 3.516300 ACCACCTTTACATATGACCGTGA 59.484 43.478 10.38 0.00 0.00 4.35
4450 5008 3.869065 ACCACCTTTACATATGACCGTG 58.131 45.455 10.38 7.75 0.00 4.94
4451 5009 4.563140 AACCACCTTTACATATGACCGT 57.437 40.909 10.38 0.00 0.00 4.83
4452 5010 4.505191 CGTAACCACCTTTACATATGACCG 59.495 45.833 10.38 0.00 32.32 4.79
4453 5011 5.663456 TCGTAACCACCTTTACATATGACC 58.337 41.667 10.38 0.00 32.32 4.02
4454 5012 6.982141 TGATCGTAACCACCTTTACATATGAC 59.018 38.462 10.38 0.00 32.32 3.06
4455 5013 7.114866 TGATCGTAACCACCTTTACATATGA 57.885 36.000 10.38 0.00 32.32 2.15
4456 5014 7.962964 ATGATCGTAACCACCTTTACATATG 57.037 36.000 0.00 0.00 32.32 1.78
4457 5015 7.817962 GCTATGATCGTAACCACCTTTACATAT 59.182 37.037 0.00 0.00 32.32 1.78
4458 5016 7.149973 GCTATGATCGTAACCACCTTTACATA 58.850 38.462 0.00 0.00 32.32 2.29
4459 5017 5.989777 GCTATGATCGTAACCACCTTTACAT 59.010 40.000 0.00 0.00 32.32 2.29
4460 5018 5.105269 TGCTATGATCGTAACCACCTTTACA 60.105 40.000 0.00 0.00 32.32 2.41
4461 5019 5.353938 TGCTATGATCGTAACCACCTTTAC 58.646 41.667 0.00 0.00 0.00 2.01
4462 5020 5.597806 CTGCTATGATCGTAACCACCTTTA 58.402 41.667 0.00 0.00 0.00 1.85
4463 5021 4.442706 CTGCTATGATCGTAACCACCTTT 58.557 43.478 0.00 0.00 0.00 3.11
4464 5022 3.741388 GCTGCTATGATCGTAACCACCTT 60.741 47.826 0.00 0.00 0.00 3.50
4465 5023 2.224066 GCTGCTATGATCGTAACCACCT 60.224 50.000 0.00 0.00 0.00 4.00
4466 5024 2.135933 GCTGCTATGATCGTAACCACC 58.864 52.381 0.00 0.00 0.00 4.61
4467 5025 2.135933 GGCTGCTATGATCGTAACCAC 58.864 52.381 0.00 0.00 0.00 4.16
4468 5026 1.269569 CGGCTGCTATGATCGTAACCA 60.270 52.381 0.00 0.00 0.00 3.67
4469 5027 1.269621 ACGGCTGCTATGATCGTAACC 60.270 52.381 0.00 0.00 32.03 2.85
4470 5028 2.052157 GACGGCTGCTATGATCGTAAC 58.948 52.381 0.00 0.00 34.06 2.50
4471 5029 1.000607 GGACGGCTGCTATGATCGTAA 60.001 52.381 0.00 0.00 34.06 3.18
4472 5030 0.596577 GGACGGCTGCTATGATCGTA 59.403 55.000 0.00 0.00 34.06 3.43
4473 5031 1.364171 GGACGGCTGCTATGATCGT 59.636 57.895 0.00 0.00 36.74 3.73
4474 5032 0.037882 ATGGACGGCTGCTATGATCG 60.038 55.000 0.00 0.00 0.00 3.69
4475 5033 1.802960 CAATGGACGGCTGCTATGATC 59.197 52.381 0.00 0.00 0.00 2.92
4476 5034 1.888215 CAATGGACGGCTGCTATGAT 58.112 50.000 0.00 0.00 0.00 2.45
4477 5035 0.815213 GCAATGGACGGCTGCTATGA 60.815 55.000 0.00 0.00 33.20 2.15
4478 5036 0.816825 AGCAATGGACGGCTGCTATG 60.817 55.000 0.88 0.00 44.44 2.23
4479 5037 0.533755 GAGCAATGGACGGCTGCTAT 60.534 55.000 3.09 0.00 46.19 2.97
4480 5038 1.153369 GAGCAATGGACGGCTGCTA 60.153 57.895 3.09 0.00 46.19 3.49
4482 5040 3.512516 GGAGCAATGGACGGCTGC 61.513 66.667 0.00 0.00 41.22 5.25
4483 5041 2.110967 CAGGAGCAATGGACGGCTG 61.111 63.158 0.00 0.00 41.22 4.85
4484 5042 2.270205 CAGGAGCAATGGACGGCT 59.730 61.111 0.00 0.00 44.48 5.52
4485 5043 2.045926 ACAGGAGCAATGGACGGC 60.046 61.111 0.00 0.00 0.00 5.68
4486 5044 1.746615 CCACAGGAGCAATGGACGG 60.747 63.158 0.00 0.00 35.33 4.79
4487 5045 0.606401 AACCACAGGAGCAATGGACG 60.606 55.000 0.00 0.00 36.94 4.79
4488 5046 1.168714 GAACCACAGGAGCAATGGAC 58.831 55.000 0.00 0.00 36.94 4.02
4489 5047 0.770499 TGAACCACAGGAGCAATGGA 59.230 50.000 0.00 0.00 36.94 3.41
4490 5048 1.619654 TTGAACCACAGGAGCAATGG 58.380 50.000 0.00 0.00 39.57 3.16
4491 5049 5.125900 TGATTATTGAACCACAGGAGCAATG 59.874 40.000 13.95 0.00 34.23 2.82
4492 5050 5.126061 GTGATTATTGAACCACAGGAGCAAT 59.874 40.000 10.90 10.90 35.53 3.56
4500 5058 4.032960 AGCCAGTGATTATTGAACCACA 57.967 40.909 0.00 0.00 32.35 4.17
4502 5060 5.565509 TGTTAGCCAGTGATTATTGAACCA 58.434 37.500 0.00 0.00 0.00 3.67
4515 5073 4.681781 GCACTGATCACTATGTTAGCCAGT 60.682 45.833 0.00 0.00 34.38 4.00
4516 5074 3.806521 GCACTGATCACTATGTTAGCCAG 59.193 47.826 0.00 0.00 0.00 4.85
4524 5082 2.030091 CACAAGCGCACTGATCACTATG 59.970 50.000 11.47 0.00 0.00 2.23
4527 5085 0.250038 ACACAAGCGCACTGATCACT 60.250 50.000 11.47 0.00 0.00 3.41
4548 5106 5.404946 CAGAAAGAATGTTGGCATAACTGG 58.595 41.667 0.00 0.00 34.39 4.00
4553 5111 2.760092 GGGCAGAAAGAATGTTGGCATA 59.240 45.455 0.00 0.00 37.80 3.14
4588 5146 1.883275 TCATAACCACTTGTTTGGCCG 59.117 47.619 0.00 0.00 40.77 6.13
4592 5150 4.582701 TGCCTTCATAACCACTTGTTTG 57.417 40.909 0.00 0.00 38.42 2.93
4597 5155 6.096846 GGTATTCATTGCCTTCATAACCACTT 59.903 38.462 0.00 0.00 0.00 3.16
4608 5166 3.950397 TCGTGAAGGTATTCATTGCCTT 58.050 40.909 0.00 0.00 46.75 4.35
4611 5174 4.201822 GGTCTTCGTGAAGGTATTCATTGC 60.202 45.833 9.58 0.00 46.75 3.56
4624 5187 0.032952 CTTGAACCGGGTCTTCGTGA 59.967 55.000 22.56 0.00 0.00 4.35
4628 5191 4.716003 CCCTTGAACCGGGTCTTC 57.284 61.111 22.56 8.79 36.91 2.87
4639 5202 2.747686 GAGTCCGGCAACCCTTGA 59.252 61.111 0.00 0.00 0.00 3.02
4642 5205 2.683933 ATCGAGTCCGGCAACCCT 60.684 61.111 0.00 0.00 36.24 4.34
4643 5206 2.202892 GATCGAGTCCGGCAACCC 60.203 66.667 0.00 0.00 36.24 4.11
4658 5221 4.563337 TGACGACGATTAATTCCTCGAT 57.437 40.909 14.41 1.96 36.67 3.59
4659 5222 4.348656 CTTGACGACGATTAATTCCTCGA 58.651 43.478 14.41 0.00 36.67 4.04
4660 5223 3.486108 CCTTGACGACGATTAATTCCTCG 59.514 47.826 0.00 7.75 38.40 4.63
4661 5224 3.802685 CCCTTGACGACGATTAATTCCTC 59.197 47.826 0.00 0.00 0.00 3.71
4662 5225 3.197116 ACCCTTGACGACGATTAATTCCT 59.803 43.478 0.00 0.00 0.00 3.36
4663 5226 3.528532 ACCCTTGACGACGATTAATTCC 58.471 45.455 0.00 0.00 0.00 3.01
4664 5227 4.726876 GCAACCCTTGACGACGATTAATTC 60.727 45.833 0.00 0.00 0.00 2.17
4665 5228 3.126343 GCAACCCTTGACGACGATTAATT 59.874 43.478 0.00 0.00 0.00 1.40
4666 5229 2.676342 GCAACCCTTGACGACGATTAAT 59.324 45.455 0.00 0.00 0.00 1.40
4667 5230 2.070783 GCAACCCTTGACGACGATTAA 58.929 47.619 0.00 0.00 0.00 1.40
4668 5231 1.001068 TGCAACCCTTGACGACGATTA 59.999 47.619 0.00 0.00 0.00 1.75
4672 5235 1.157870 AAGTGCAACCCTTGACGACG 61.158 55.000 0.00 0.00 37.80 5.12
4696 5259 1.030457 GCCCTAACGTCTAGCTAGCA 58.970 55.000 18.83 2.41 0.00 3.49
4697 5260 1.030457 TGCCCTAACGTCTAGCTAGC 58.970 55.000 16.35 6.62 0.00 3.42
4698 5261 2.426024 TGTTGCCCTAACGTCTAGCTAG 59.574 50.000 15.01 15.01 42.34 3.42
4700 5263 1.263356 TGTTGCCCTAACGTCTAGCT 58.737 50.000 0.00 0.00 42.34 3.32
4708 5275 2.095415 GGTTGATCGTTGTTGCCCTAAC 60.095 50.000 0.00 0.00 39.80 2.34
4724 5291 1.881925 CGTTGCCTCCAAGATGGTTGA 60.882 52.381 0.00 0.00 39.03 3.18
4728 5295 2.409870 GCCGTTGCCTCCAAGATGG 61.410 63.158 0.00 0.00 39.43 3.51
4750 5317 2.202987 ATGAGGTGCGCTAGCTGC 60.203 61.111 20.03 20.03 45.42 5.25
4751 5318 1.142531 TGATGAGGTGCGCTAGCTG 59.857 57.895 13.93 7.67 45.42 4.24
4752 5319 1.142748 GTGATGAGGTGCGCTAGCT 59.857 57.895 13.93 10.24 45.42 3.32
4753 5320 2.233654 CGTGATGAGGTGCGCTAGC 61.234 63.158 9.73 4.06 45.41 3.42
4754 5321 2.233654 GCGTGATGAGGTGCGCTAG 61.234 63.158 9.73 0.00 45.48 3.42
4755 5322 2.202743 GCGTGATGAGGTGCGCTA 60.203 61.111 9.73 0.00 45.48 4.26
4758 5325 2.512286 ATGGCGTGATGAGGTGCG 60.512 61.111 0.00 0.00 0.00 5.34
4777 5344 2.617274 GCCTCCGTGGAGTTGCAAC 61.617 63.158 22.17 22.17 40.44 4.17
4787 5354 1.961277 GTGTGTCAAGGCCTCCGTG 60.961 63.158 5.23 0.00 34.41 4.94
4789 5356 2.738521 CGTGTGTCAAGGCCTCCG 60.739 66.667 5.23 0.00 0.00 4.63
4837 5410 2.625737 CCTATGGCTATGGAATGAGCG 58.374 52.381 0.00 0.00 39.72 5.03
4839 5412 4.472470 TCATCCCTATGGCTATGGAATGAG 59.528 45.833 0.00 0.00 33.61 2.90
4842 5415 4.229123 CCTTCATCCCTATGGCTATGGAAT 59.771 45.833 0.00 0.00 33.61 3.01
4844 5417 3.184628 CCTTCATCCCTATGGCTATGGA 58.815 50.000 0.00 0.00 33.61 3.41
4850 5423 1.490490 TGTCACCTTCATCCCTATGGC 59.510 52.381 0.00 0.00 33.61 4.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.