Multiple sequence alignment - TraesCS6D01G006600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G006600 chr6D 100.000 4973 0 0 406 5378 2887087 2892059 0.000000e+00 9184.0
1 TraesCS6D01G006600 chr6D 100.000 221 0 0 1 221 2886682 2886902 5.010000e-110 409.0
2 TraesCS6D01G006600 chr6D 82.305 243 25 10 1985 2219 2888009 2888241 1.530000e-45 195.0
3 TraesCS6D01G006600 chr6D 82.305 243 25 10 1328 1560 2888666 2888900 1.530000e-45 195.0
4 TraesCS6D01G006600 chr6B 94.404 1787 85 11 3576 5350 6018535 6020318 0.000000e+00 2732.0
5 TraesCS6D01G006600 chr6B 85.714 1183 77 45 728 1856 6015863 6017007 0.000000e+00 1164.0
6 TraesCS6D01G006600 chr6B 96.296 567 16 5 3018 3580 6017941 6018506 0.000000e+00 926.0
7 TraesCS6D01G006600 chr6B 88.799 616 42 13 2367 2978 6017349 6017941 0.000000e+00 730.0
8 TraesCS6D01G006600 chr6B 91.515 330 24 2 1660 1985 6017008 6017337 8.210000e-123 451.0
9 TraesCS6D01G006600 chr6B 81.034 232 28 8 1995 2222 6016485 6016704 2.580000e-38 171.0
10 TraesCS6D01G006600 chr6A 94.633 1565 54 10 3654 5205 1888752 1890299 0.000000e+00 2398.0
11 TraesCS6D01G006600 chr6A 94.185 1049 35 13 2555 3580 1887493 1888538 0.000000e+00 1576.0
12 TraesCS6D01G006600 chr6A 93.063 937 49 8 1733 2665 1886575 1887499 0.000000e+00 1356.0
13 TraesCS6D01G006600 chr6A 89.405 1076 68 21 651 1702 1885522 1886575 0.000000e+00 1314.0
14 TraesCS6D01G006600 chr6A 83.402 241 29 6 1323 1560 1886824 1887056 4.220000e-51 213.0
15 TraesCS6D01G006600 chr6A 86.842 152 18 2 5217 5366 1890681 1890832 9.260000e-38 169.0
16 TraesCS6D01G006600 chr6A 96.296 81 3 0 3576 3656 1888567 1888647 3.380000e-27 134.0
17 TraesCS6D01G006600 chr6A 83.824 136 14 6 2540 2669 1886334 1886467 7.310000e-24 122.0
18 TraesCS6D01G006600 chr2B 93.555 1474 52 23 2111 3580 780779860 780781294 0.000000e+00 2156.0
19 TraesCS6D01G006600 chr2B 95.380 974 34 5 3668 4632 780782057 780783028 0.000000e+00 1539.0
20 TraesCS6D01G006600 chr2B 83.800 858 55 43 609 1421 780779041 780779859 0.000000e+00 737.0
21 TraesCS6D01G006600 chr2B 93.258 89 6 0 1985 2073 780779770 780779858 1.220000e-26 132.0
22 TraesCS6D01G006600 chr2B 88.889 108 9 1 3576 3680 780781323 780781430 4.370000e-26 130.0
23 TraesCS6D01G006600 chr2B 80.531 113 14 5 1453 1560 780779860 780779969 4.470000e-11 80.5
24 TraesCS6D01G006600 chr2B 97.561 41 0 1 415 455 768649457 768649418 9.670000e-08 69.4
25 TraesCS6D01G006600 chr2B 92.000 50 2 2 419 468 770063329 770063282 9.670000e-08 69.4
26 TraesCS6D01G006600 chr2B 91.667 48 3 1 409 455 669239039 669239086 1.250000e-06 65.8
27 TraesCS6D01G006600 chr3A 97.619 42 0 1 415 455 100863656 100863697 2.690000e-08 71.3
28 TraesCS6D01G006600 chr2D 97.500 40 1 0 416 455 618156679 618156718 9.670000e-08 69.4
29 TraesCS6D01G006600 chr1B 97.297 37 1 0 419 455 651903072 651903036 4.500000e-06 63.9
30 TraesCS6D01G006600 chr4B 100.000 28 0 0 428 455 595718074 595718047 1.000000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G006600 chr6D 2886682 2892059 5377 False 4796.50 9184 100.00000 1 5378 2 chr6D.!!$F1 5377
1 TraesCS6D01G006600 chr6B 6015863 6020318 4455 False 1029.00 2732 89.62700 728 5350 6 chr6B.!!$F1 4622
2 TraesCS6D01G006600 chr6A 1885522 1890832 5310 False 910.25 2398 90.20625 651 5366 8 chr6A.!!$F1 4715
3 TraesCS6D01G006600 chr2B 780779041 780783028 3987 False 795.75 2156 89.23550 609 4632 6 chr2B.!!$F2 4023

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
604 605 0.032678 CGATTCATCTGGTCTCCGGG 59.967 60.0 0.00 0.00 0.0 5.73 F
1395 1479 0.027455 TTCTGTCAAACAAGCGCACG 59.973 50.0 11.47 1.39 0.0 5.34 F
1772 2069 0.095245 GTTGCACATGTGACCGATCG 59.905 55.0 29.80 8.51 0.0 3.69 F
2095 2397 0.109342 AGGACAGACTGCAACTTGGG 59.891 55.0 1.25 0.00 0.0 4.12 F
2807 3251 0.250234 TCTCATTTGCAGGTCTCCGG 59.750 55.0 0.00 0.00 0.0 5.14 F
3332 3780 1.767759 AGTCATTGCCTGTATTGCCC 58.232 50.0 0.00 0.00 0.0 5.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2032 2334 0.095245 ATTCGTGCGCTTGATTGACG 59.905 50.000 9.73 8.56 0.00 4.35 R
2365 2681 1.106285 GGCTAAATTGGACAGGGCAG 58.894 55.000 0.00 0.00 0.00 4.85 R
2604 2923 3.062504 CACTTGCCAAACAAACTTGCTTC 59.937 43.478 0.00 0.00 37.96 3.86 R
3936 5169 1.282157 ACAGGCCAAGTAGGTTCCATC 59.718 52.381 5.01 0.00 40.61 3.51 R
4278 5516 0.105039 GCTCGGCACATAAGCTAGGT 59.895 55.000 0.00 0.00 33.23 3.08 R
5317 6945 0.968405 TGAGAAACCTTGGGCAATGC 59.032 50.000 0.00 0.00 0.00 3.56 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 1.714794 ACGAGAGAAAGCGTGGATTG 58.285 50.000 0.00 0.00 39.56 2.67
21 22 1.002366 CGAGAGAAAGCGTGGATTGG 58.998 55.000 0.00 0.00 0.00 3.16
22 23 1.404181 CGAGAGAAAGCGTGGATTGGA 60.404 52.381 0.00 0.00 0.00 3.53
23 24 2.739932 CGAGAGAAAGCGTGGATTGGAT 60.740 50.000 0.00 0.00 0.00 3.41
24 25 3.274288 GAGAGAAAGCGTGGATTGGATT 58.726 45.455 0.00 0.00 0.00 3.01
25 26 3.274288 AGAGAAAGCGTGGATTGGATTC 58.726 45.455 0.00 0.00 0.00 2.52
26 27 2.009774 AGAAAGCGTGGATTGGATTCG 58.990 47.619 0.00 0.00 0.00 3.34
27 28 1.064060 GAAAGCGTGGATTGGATTCGG 59.936 52.381 0.00 0.00 0.00 4.30
28 29 0.035439 AAGCGTGGATTGGATTCGGT 60.035 50.000 0.00 0.00 0.00 4.69
29 30 0.035439 AGCGTGGATTGGATTCGGTT 60.035 50.000 0.00 0.00 0.00 4.44
30 31 0.808755 GCGTGGATTGGATTCGGTTT 59.191 50.000 0.00 0.00 0.00 3.27
31 32 1.467374 GCGTGGATTGGATTCGGTTTG 60.467 52.381 0.00 0.00 0.00 2.93
32 33 1.467374 CGTGGATTGGATTCGGTTTGC 60.467 52.381 0.00 0.00 0.00 3.68
33 34 1.543802 GTGGATTGGATTCGGTTTGCA 59.456 47.619 0.00 0.00 0.00 4.08
34 35 2.166254 GTGGATTGGATTCGGTTTGCAT 59.834 45.455 0.00 0.00 0.00 3.96
35 36 2.830923 TGGATTGGATTCGGTTTGCATT 59.169 40.909 0.00 0.00 0.00 3.56
36 37 3.260380 TGGATTGGATTCGGTTTGCATTT 59.740 39.130 0.00 0.00 0.00 2.32
37 38 4.464244 TGGATTGGATTCGGTTTGCATTTA 59.536 37.500 0.00 0.00 0.00 1.40
38 39 5.128499 TGGATTGGATTCGGTTTGCATTTAT 59.872 36.000 0.00 0.00 0.00 1.40
39 40 6.322456 TGGATTGGATTCGGTTTGCATTTATA 59.678 34.615 0.00 0.00 0.00 0.98
40 41 6.863126 GGATTGGATTCGGTTTGCATTTATAG 59.137 38.462 0.00 0.00 0.00 1.31
41 42 5.766150 TGGATTCGGTTTGCATTTATAGG 57.234 39.130 0.00 0.00 0.00 2.57
42 43 4.582656 TGGATTCGGTTTGCATTTATAGGG 59.417 41.667 0.00 0.00 0.00 3.53
43 44 4.583073 GGATTCGGTTTGCATTTATAGGGT 59.417 41.667 0.00 0.00 0.00 4.34
44 45 5.068591 GGATTCGGTTTGCATTTATAGGGTT 59.931 40.000 0.00 0.00 0.00 4.11
45 46 5.986501 TTCGGTTTGCATTTATAGGGTTT 57.013 34.783 0.00 0.00 0.00 3.27
46 47 5.317733 TCGGTTTGCATTTATAGGGTTTG 57.682 39.130 0.00 0.00 0.00 2.93
47 48 4.767928 TCGGTTTGCATTTATAGGGTTTGT 59.232 37.500 0.00 0.00 0.00 2.83
48 49 5.244178 TCGGTTTGCATTTATAGGGTTTGTT 59.756 36.000 0.00 0.00 0.00 2.83
49 50 5.929415 CGGTTTGCATTTATAGGGTTTGTTT 59.071 36.000 0.00 0.00 0.00 2.83
50 51 6.425417 CGGTTTGCATTTATAGGGTTTGTTTT 59.575 34.615 0.00 0.00 0.00 2.43
51 52 7.041712 CGGTTTGCATTTATAGGGTTTGTTTTT 60.042 33.333 0.00 0.00 0.00 1.94
52 53 8.286800 GGTTTGCATTTATAGGGTTTGTTTTTC 58.713 33.333 0.00 0.00 0.00 2.29
53 54 8.831550 GTTTGCATTTATAGGGTTTGTTTTTCA 58.168 29.630 0.00 0.00 0.00 2.69
54 55 8.964476 TTGCATTTATAGGGTTTGTTTTTCAA 57.036 26.923 0.00 0.00 0.00 2.69
55 56 8.600449 TGCATTTATAGGGTTTGTTTTTCAAG 57.400 30.769 0.00 0.00 37.35 3.02
56 57 8.424918 TGCATTTATAGGGTTTGTTTTTCAAGA 58.575 29.630 0.00 0.00 37.35 3.02
57 58 8.925700 GCATTTATAGGGTTTGTTTTTCAAGAG 58.074 33.333 0.00 0.00 37.35 2.85
58 59 9.981114 CATTTATAGGGTTTGTTTTTCAAGAGT 57.019 29.630 0.00 0.00 37.35 3.24
60 61 6.650427 ATAGGGTTTGTTTTTCAAGAGTCC 57.350 37.500 0.00 0.00 37.35 3.85
61 62 3.704566 AGGGTTTGTTTTTCAAGAGTCCC 59.295 43.478 0.00 0.00 37.35 4.46
62 63 3.181469 GGGTTTGTTTTTCAAGAGTCCCC 60.181 47.826 0.00 0.00 37.35 4.81
63 64 3.490249 GGTTTGTTTTTCAAGAGTCCCCG 60.490 47.826 0.00 0.00 37.35 5.73
64 65 1.314730 TGTTTTTCAAGAGTCCCCGC 58.685 50.000 0.00 0.00 0.00 6.13
65 66 1.133915 TGTTTTTCAAGAGTCCCCGCT 60.134 47.619 0.00 0.00 0.00 5.52
66 67 1.535896 GTTTTTCAAGAGTCCCCGCTC 59.464 52.381 0.00 0.00 35.82 5.03
67 68 1.056660 TTTTCAAGAGTCCCCGCTCT 58.943 50.000 0.00 0.00 46.82 4.09
71 72 2.445614 AGAGTCCCCGCTCTTGGA 59.554 61.111 0.00 0.00 42.69 3.53
72 73 1.002274 AGAGTCCCCGCTCTTGGAT 59.998 57.895 0.00 0.00 42.69 3.41
73 74 1.045911 AGAGTCCCCGCTCTTGGATC 61.046 60.000 0.00 0.00 42.69 3.36
74 75 1.002274 AGTCCCCGCTCTTGGATCT 59.998 57.895 0.00 0.00 32.20 2.75
75 76 1.144936 GTCCCCGCTCTTGGATCTG 59.855 63.158 0.00 0.00 32.20 2.90
76 77 1.001631 TCCCCGCTCTTGGATCTGA 59.998 57.895 0.00 0.00 0.00 3.27
77 78 1.144936 CCCCGCTCTTGGATCTGAC 59.855 63.158 0.00 0.00 0.00 3.51
78 79 1.144936 CCCGCTCTTGGATCTGACC 59.855 63.158 0.00 0.00 0.00 4.02
79 80 1.333636 CCCGCTCTTGGATCTGACCT 61.334 60.000 0.00 0.00 0.00 3.85
80 81 0.179089 CCGCTCTTGGATCTGACCTG 60.179 60.000 0.00 0.00 0.00 4.00
81 82 0.809241 CGCTCTTGGATCTGACCTGC 60.809 60.000 0.00 0.00 0.00 4.85
82 83 0.809241 GCTCTTGGATCTGACCTGCG 60.809 60.000 0.00 0.00 0.00 5.18
83 84 0.179089 CTCTTGGATCTGACCTGCGG 60.179 60.000 0.00 0.00 0.00 5.69
84 85 0.614697 TCTTGGATCTGACCTGCGGA 60.615 55.000 0.00 0.00 36.05 5.54
85 86 0.179089 CTTGGATCTGACCTGCGGAG 60.179 60.000 0.00 0.00 34.80 4.63
86 87 1.617018 TTGGATCTGACCTGCGGAGG 61.617 60.000 22.94 22.94 46.21 4.30
87 88 1.758514 GGATCTGACCTGCGGAGGA 60.759 63.158 31.46 7.36 42.93 3.71
88 89 1.330655 GGATCTGACCTGCGGAGGAA 61.331 60.000 31.46 16.01 42.93 3.36
89 90 0.755686 GATCTGACCTGCGGAGGAAT 59.244 55.000 31.46 16.21 42.93 3.01
90 91 1.139853 GATCTGACCTGCGGAGGAATT 59.860 52.381 31.46 7.22 42.93 2.17
91 92 0.984230 TCTGACCTGCGGAGGAATTT 59.016 50.000 31.46 6.77 42.93 1.82
92 93 1.089920 CTGACCTGCGGAGGAATTTG 58.910 55.000 31.46 10.53 42.93 2.32
93 94 0.322456 TGACCTGCGGAGGAATTTGG 60.322 55.000 31.46 1.55 42.93 3.28
94 95 1.000896 ACCTGCGGAGGAATTTGGG 60.001 57.895 31.46 0.66 42.93 4.12
95 96 1.000896 CCTGCGGAGGAATTTGGGT 60.001 57.895 19.84 0.00 42.93 4.51
96 97 0.611896 CCTGCGGAGGAATTTGGGTT 60.612 55.000 19.84 0.00 42.93 4.11
97 98 0.811281 CTGCGGAGGAATTTGGGTTC 59.189 55.000 0.00 0.00 0.00 3.62
98 99 0.610785 TGCGGAGGAATTTGGGTTCC 60.611 55.000 0.00 0.00 46.49 3.62
107 108 3.821033 GGAATTTGGGTTCCTCATATCCG 59.179 47.826 0.00 0.00 43.49 4.18
108 109 2.341846 TTTGGGTTCCTCATATCCGC 57.658 50.000 0.00 0.00 0.00 5.54
109 110 0.472471 TTGGGTTCCTCATATCCGCC 59.528 55.000 0.00 0.00 0.00 6.13
110 111 1.004918 GGGTTCCTCATATCCGCCG 60.005 63.158 0.00 0.00 0.00 6.46
111 112 1.668151 GGTTCCTCATATCCGCCGC 60.668 63.158 0.00 0.00 0.00 6.53
112 113 1.069090 GTTCCTCATATCCGCCGCA 59.931 57.895 0.00 0.00 0.00 5.69
113 114 1.069090 TTCCTCATATCCGCCGCAC 59.931 57.895 0.00 0.00 0.00 5.34
114 115 1.681486 TTCCTCATATCCGCCGCACA 61.681 55.000 0.00 0.00 0.00 4.57
115 116 1.956170 CCTCATATCCGCCGCACAC 60.956 63.158 0.00 0.00 0.00 3.82
116 117 1.227234 CTCATATCCGCCGCACACA 60.227 57.895 0.00 0.00 0.00 3.72
117 118 0.601046 CTCATATCCGCCGCACACAT 60.601 55.000 0.00 0.00 0.00 3.21
118 119 0.879839 TCATATCCGCCGCACACATG 60.880 55.000 0.00 0.00 0.00 3.21
119 120 1.597854 ATATCCGCCGCACACATGG 60.598 57.895 0.00 0.00 0.00 3.66
126 127 3.049674 CGCACACATGGCCGAGTT 61.050 61.111 0.00 0.00 0.00 3.01
127 128 2.616330 CGCACACATGGCCGAGTTT 61.616 57.895 0.00 0.00 0.00 2.66
128 129 1.295357 CGCACACATGGCCGAGTTTA 61.295 55.000 0.00 0.00 0.00 2.01
129 130 0.878416 GCACACATGGCCGAGTTTAA 59.122 50.000 0.00 0.00 0.00 1.52
130 131 1.135689 GCACACATGGCCGAGTTTAAG 60.136 52.381 0.00 0.00 0.00 1.85
131 132 2.422597 CACACATGGCCGAGTTTAAGA 58.577 47.619 0.00 0.00 0.00 2.10
132 133 2.416547 CACACATGGCCGAGTTTAAGAG 59.583 50.000 0.00 0.00 0.00 2.85
133 134 2.009774 CACATGGCCGAGTTTAAGAGG 58.990 52.381 0.00 0.00 0.00 3.69
134 135 1.628846 ACATGGCCGAGTTTAAGAGGT 59.371 47.619 0.00 0.00 0.00 3.85
135 136 2.009774 CATGGCCGAGTTTAAGAGGTG 58.990 52.381 0.00 0.00 0.00 4.00
136 137 1.053424 TGGCCGAGTTTAAGAGGTGT 58.947 50.000 0.00 0.00 0.00 4.16
137 138 1.001633 TGGCCGAGTTTAAGAGGTGTC 59.998 52.381 0.00 0.00 0.00 3.67
138 139 1.347320 GCCGAGTTTAAGAGGTGTCG 58.653 55.000 0.00 0.00 0.00 4.35
139 140 1.992170 CCGAGTTTAAGAGGTGTCGG 58.008 55.000 0.00 0.00 40.86 4.79
141 142 2.593257 CGAGTTTAAGAGGTGTCGGAC 58.407 52.381 0.00 0.00 0.00 4.79
142 143 2.030540 CGAGTTTAAGAGGTGTCGGACA 60.031 50.000 6.76 6.76 0.00 4.02
143 144 3.551454 CGAGTTTAAGAGGTGTCGGACAA 60.551 47.826 13.23 0.00 0.00 3.18
144 145 3.725490 AGTTTAAGAGGTGTCGGACAAC 58.275 45.455 18.31 18.31 35.64 3.32
146 147 4.124970 GTTTAAGAGGTGTCGGACAACTT 58.875 43.478 27.94 23.76 45.36 2.66
147 148 2.240493 AAGAGGTGTCGGACAACTTG 57.760 50.000 27.94 0.00 45.36 3.16
148 149 1.410004 AGAGGTGTCGGACAACTTGA 58.590 50.000 27.94 0.00 45.36 3.02
149 150 1.760613 AGAGGTGTCGGACAACTTGAA 59.239 47.619 27.94 0.00 45.36 2.69
150 151 1.865340 GAGGTGTCGGACAACTTGAAC 59.135 52.381 27.94 12.83 45.36 3.18
151 152 0.580104 GGTGTCGGACAACTTGAACG 59.420 55.000 18.66 0.03 31.84 3.95
152 153 1.283736 GTGTCGGACAACTTGAACGT 58.716 50.000 13.23 0.00 0.00 3.99
153 154 1.662122 GTGTCGGACAACTTGAACGTT 59.338 47.619 13.23 0.00 0.00 3.99
154 155 2.094734 GTGTCGGACAACTTGAACGTTT 59.905 45.455 13.23 0.00 0.00 3.60
155 156 2.094575 TGTCGGACAACTTGAACGTTTG 59.905 45.455 8.68 0.00 0.00 2.93
156 157 1.666700 TCGGACAACTTGAACGTTTGG 59.333 47.619 0.46 0.00 0.00 3.28
157 158 1.835121 GGACAACTTGAACGTTTGGC 58.165 50.000 0.46 0.00 0.00 4.52
158 159 1.535226 GGACAACTTGAACGTTTGGCC 60.535 52.381 6.06 6.06 0.00 5.36
159 160 1.404035 GACAACTTGAACGTTTGGCCT 59.596 47.619 3.32 0.00 0.00 5.19
160 161 1.134175 ACAACTTGAACGTTTGGCCTG 59.866 47.619 3.32 0.65 0.00 4.85
161 162 1.403679 CAACTTGAACGTTTGGCCTGA 59.596 47.619 3.32 0.00 0.00 3.86
162 163 1.021968 ACTTGAACGTTTGGCCTGAC 58.978 50.000 3.32 1.06 0.00 3.51
163 164 1.308998 CTTGAACGTTTGGCCTGACT 58.691 50.000 3.32 0.00 0.00 3.41
164 165 1.676006 CTTGAACGTTTGGCCTGACTT 59.324 47.619 3.32 0.00 0.00 3.01
165 166 1.757682 TGAACGTTTGGCCTGACTTT 58.242 45.000 3.32 2.16 0.00 2.66
166 167 1.403679 TGAACGTTTGGCCTGACTTTG 59.596 47.619 3.32 0.00 0.00 2.77
167 168 1.673920 GAACGTTTGGCCTGACTTTGA 59.326 47.619 3.32 0.00 0.00 2.69
168 169 1.308998 ACGTTTGGCCTGACTTTGAG 58.691 50.000 3.32 0.00 0.00 3.02
169 170 0.593128 CGTTTGGCCTGACTTTGAGG 59.407 55.000 3.32 0.00 0.00 3.86
170 171 0.961753 GTTTGGCCTGACTTTGAGGG 59.038 55.000 3.32 0.00 0.00 4.30
173 174 2.759795 GCCTGACTTTGAGGGCCT 59.240 61.111 5.25 5.25 38.77 5.19
174 175 1.991230 GCCTGACTTTGAGGGCCTA 59.009 57.895 5.73 0.00 38.77 3.93
175 176 0.107459 GCCTGACTTTGAGGGCCTAG 60.107 60.000 5.73 2.35 38.77 3.02
176 177 1.280457 CCTGACTTTGAGGGCCTAGT 58.720 55.000 5.73 6.59 0.00 2.57
177 178 1.630878 CCTGACTTTGAGGGCCTAGTT 59.369 52.381 5.73 0.00 0.00 2.24
178 179 2.838202 CCTGACTTTGAGGGCCTAGTTA 59.162 50.000 5.73 2.18 0.00 2.24
179 180 3.263425 CCTGACTTTGAGGGCCTAGTTAA 59.737 47.826 5.73 0.00 0.00 2.01
180 181 4.263331 CCTGACTTTGAGGGCCTAGTTAAA 60.263 45.833 5.73 5.32 0.00 1.52
181 182 5.501156 CTGACTTTGAGGGCCTAGTTAAAT 58.499 41.667 5.73 0.00 0.00 1.40
182 183 5.253330 TGACTTTGAGGGCCTAGTTAAATG 58.747 41.667 5.73 1.73 0.00 2.32
183 184 4.600062 ACTTTGAGGGCCTAGTTAAATGG 58.400 43.478 5.73 0.00 0.00 3.16
184 185 2.729028 TGAGGGCCTAGTTAAATGGC 57.271 50.000 5.73 7.55 45.42 4.40
212 213 5.425577 TTTTCAATCCGAACATTGTTCGA 57.574 34.783 39.44 28.69 43.97 3.71
213 214 4.661993 TTCAATCCGAACATTGTTCGAG 57.338 40.909 39.44 30.65 43.97 4.04
214 215 2.415168 TCAATCCGAACATTGTTCGAGC 59.585 45.455 39.44 13.29 43.97 5.03
215 216 2.386661 ATCCGAACATTGTTCGAGCT 57.613 45.000 39.44 25.35 43.97 4.09
216 217 1.428448 TCCGAACATTGTTCGAGCTG 58.572 50.000 39.44 27.24 43.97 4.24
217 218 1.148310 CCGAACATTGTTCGAGCTGT 58.852 50.000 39.44 3.36 43.97 4.40
218 219 1.531149 CCGAACATTGTTCGAGCTGTT 59.469 47.619 39.44 6.60 43.97 3.16
219 220 2.411547 CCGAACATTGTTCGAGCTGTTC 60.412 50.000 39.44 18.42 43.97 3.18
438 439 2.862738 TTTTTCGATCGAAGGGGCC 58.137 52.632 27.68 0.00 35.38 5.80
439 440 0.037017 TTTTTCGATCGAAGGGGCCA 59.963 50.000 27.68 11.72 35.38 5.36
440 441 0.675522 TTTTCGATCGAAGGGGCCAC 60.676 55.000 27.68 0.00 35.38 5.01
441 442 1.832719 TTTCGATCGAAGGGGCCACA 61.833 55.000 27.68 10.28 35.38 4.17
442 443 2.511600 CGATCGAAGGGGCCACAC 60.512 66.667 10.26 0.00 0.00 3.82
443 444 2.511600 GATCGAAGGGGCCACACG 60.512 66.667 8.31 13.55 0.00 4.49
444 445 4.096003 ATCGAAGGGGCCACACGG 62.096 66.667 21.00 3.95 0.00 4.94
454 455 2.603171 CCACACGGCCCCCATTTT 60.603 61.111 0.00 0.00 0.00 1.82
455 456 2.213513 CCACACGGCCCCCATTTTT 61.214 57.895 0.00 0.00 0.00 1.94
503 504 8.655651 TTTTAGGCAAATTAACCACTCTTTTG 57.344 30.769 0.00 0.00 0.00 2.44
504 505 5.869649 AGGCAAATTAACCACTCTTTTGT 57.130 34.783 0.00 0.00 31.56 2.83
505 506 5.600696 AGGCAAATTAACCACTCTTTTGTG 58.399 37.500 0.00 0.00 37.66 3.33
506 507 5.362430 AGGCAAATTAACCACTCTTTTGTGA 59.638 36.000 0.00 0.00 40.12 3.58
507 508 6.045955 GGCAAATTAACCACTCTTTTGTGAA 58.954 36.000 0.00 0.00 40.12 3.18
508 509 6.536941 GGCAAATTAACCACTCTTTTGTGAAA 59.463 34.615 0.00 0.00 40.12 2.69
509 510 7.065204 GGCAAATTAACCACTCTTTTGTGAAAA 59.935 33.333 0.00 0.00 40.12 2.29
510 511 8.611757 GCAAATTAACCACTCTTTTGTGAAAAT 58.388 29.630 0.00 0.00 40.12 1.82
517 518 9.719355 AACCACTCTTTTGTGAAAATAAAAACT 57.281 25.926 0.00 0.00 40.12 2.66
538 539 8.502105 AAACTAGGATATGAACTTTTAACGGG 57.498 34.615 0.00 0.00 0.00 5.28
539 540 6.589135 ACTAGGATATGAACTTTTAACGGGG 58.411 40.000 0.00 0.00 0.00 5.73
540 541 4.204799 AGGATATGAACTTTTAACGGGGC 58.795 43.478 0.00 0.00 0.00 5.80
541 542 3.317149 GGATATGAACTTTTAACGGGGCC 59.683 47.826 0.00 0.00 0.00 5.80
542 543 1.552578 ATGAACTTTTAACGGGGCCC 58.447 50.000 15.76 15.76 0.00 5.80
543 544 0.185416 TGAACTTTTAACGGGGCCCA 59.815 50.000 26.86 0.00 0.00 5.36
544 545 1.203075 TGAACTTTTAACGGGGCCCAT 60.203 47.619 26.86 13.61 0.00 4.00
545 546 1.203758 GAACTTTTAACGGGGCCCATG 59.796 52.381 26.86 18.51 0.00 3.66
546 547 0.613572 ACTTTTAACGGGGCCCATGG 60.614 55.000 26.86 14.97 0.00 3.66
547 548 0.323908 CTTTTAACGGGGCCCATGGA 60.324 55.000 26.86 2.18 0.00 3.41
548 549 0.612453 TTTTAACGGGGCCCATGGAC 60.612 55.000 26.86 0.00 0.00 4.02
549 550 1.502527 TTTAACGGGGCCCATGGACT 61.503 55.000 26.86 7.04 0.00 3.85
550 551 1.917336 TTAACGGGGCCCATGGACTC 61.917 60.000 26.86 0.00 0.00 3.36
557 558 4.489771 CCCATGGACTCGGCCCAC 62.490 72.222 15.22 0.00 36.36 4.61
558 559 4.838152 CCATGGACTCGGCCCACG 62.838 72.222 5.56 0.00 46.11 4.94
563 564 4.980805 GACTCGGCCCACGCAACA 62.981 66.667 0.00 0.00 43.86 3.33
564 565 4.555709 ACTCGGCCCACGCAACAA 62.556 61.111 0.00 0.00 43.86 2.83
565 566 4.025401 CTCGGCCCACGCAACAAC 62.025 66.667 0.00 0.00 43.86 3.32
590 591 3.326210 CCGCTGCGAGCTCGATTC 61.326 66.667 38.74 21.64 43.02 2.52
591 592 2.580597 CGCTGCGAGCTCGATTCA 60.581 61.111 38.74 24.91 43.02 2.57
592 593 1.948138 CGCTGCGAGCTCGATTCAT 60.948 57.895 38.74 0.00 43.02 2.57
593 594 1.851978 GCTGCGAGCTCGATTCATC 59.148 57.895 38.74 20.15 43.02 2.92
594 595 0.597118 GCTGCGAGCTCGATTCATCT 60.597 55.000 38.74 0.00 43.02 2.90
595 596 1.130140 CTGCGAGCTCGATTCATCTG 58.870 55.000 38.74 19.00 43.02 2.90
596 597 0.249197 TGCGAGCTCGATTCATCTGG 60.249 55.000 38.74 6.94 43.02 3.86
597 598 0.249238 GCGAGCTCGATTCATCTGGT 60.249 55.000 38.74 0.00 43.02 4.00
598 599 1.764851 CGAGCTCGATTCATCTGGTC 58.235 55.000 32.06 0.00 43.02 4.02
599 600 1.336440 CGAGCTCGATTCATCTGGTCT 59.664 52.381 32.06 0.00 43.02 3.85
600 601 2.604373 CGAGCTCGATTCATCTGGTCTC 60.604 54.545 32.06 0.00 43.02 3.36
601 602 1.686052 AGCTCGATTCATCTGGTCTCC 59.314 52.381 0.00 0.00 0.00 3.71
602 603 1.601663 GCTCGATTCATCTGGTCTCCG 60.602 57.143 0.00 0.00 0.00 4.63
603 604 1.000827 CTCGATTCATCTGGTCTCCGG 60.001 57.143 0.00 0.00 0.00 5.14
604 605 0.032678 CGATTCATCTGGTCTCCGGG 59.967 60.000 0.00 0.00 0.00 5.73
605 606 0.394565 GATTCATCTGGTCTCCGGGG 59.605 60.000 0.00 0.00 0.00 5.73
606 607 1.056700 ATTCATCTGGTCTCCGGGGG 61.057 60.000 0.00 0.00 0.00 5.40
607 608 3.866582 CATCTGGTCTCCGGGGGC 61.867 72.222 0.00 0.00 0.00 5.80
623 624 3.692690 GGGGGCTGGCGAAAATATATAA 58.307 45.455 0.00 0.00 0.00 0.98
624 625 3.442625 GGGGGCTGGCGAAAATATATAAC 59.557 47.826 0.00 0.00 0.00 1.89
633 638 4.689345 GCGAAAATATATAACGCAGGAGGT 59.311 41.667 18.97 0.00 46.75 3.85
667 672 3.370978 CGGATAGAGCGAGAGAGAAGATC 59.629 52.174 0.00 0.00 0.00 2.75
769 779 6.868339 ACCTCCGATCAAATTTGTGATTTTTC 59.132 34.615 17.47 4.69 38.38 2.29
772 782 8.464770 TCCGATCAAATTTGTGATTTTTCATC 57.535 30.769 17.47 8.86 38.38 2.92
780 790 8.830201 AATTTGTGATTTTTCATCGATTTCCA 57.170 26.923 0.00 0.00 0.00 3.53
781 791 9.439500 AATTTGTGATTTTTCATCGATTTCCAT 57.561 25.926 0.00 0.00 0.00 3.41
844 863 2.018447 CCCCCAGGAAATCCCACAT 58.982 57.895 0.00 0.00 37.41 3.21
853 872 3.117360 AGGAAATCCCACATCCAGATTCC 60.117 47.826 0.00 0.00 37.41 3.01
1016 1057 1.620259 CTCCCCTCTCCTCTGCTCT 59.380 63.158 0.00 0.00 0.00 4.09
1017 1058 0.756442 CTCCCCTCTCCTCTGCTCTG 60.756 65.000 0.00 0.00 0.00 3.35
1018 1059 1.217747 TCCCCTCTCCTCTGCTCTGA 61.218 60.000 0.00 0.00 0.00 3.27
1019 1060 0.105555 CCCCTCTCCTCTGCTCTGAT 60.106 60.000 0.00 0.00 0.00 2.90
1020 1061 1.692121 CCCCTCTCCTCTGCTCTGATT 60.692 57.143 0.00 0.00 0.00 2.57
1021 1062 2.117865 CCCTCTCCTCTGCTCTGATTT 58.882 52.381 0.00 0.00 0.00 2.17
1022 1063 2.158928 CCCTCTCCTCTGCTCTGATTTG 60.159 54.545 0.00 0.00 0.00 2.32
1023 1064 2.553086 CTCTCCTCTGCTCTGATTTGC 58.447 52.381 0.00 0.00 0.00 3.68
1140 1215 2.947652 TGGATCTGCTTGCAAGATTAGC 59.052 45.455 30.39 15.58 34.50 3.09
1304 1388 6.426646 TGCTCCCTCTATCTCCTTATTTTC 57.573 41.667 0.00 0.00 0.00 2.29
1307 1391 5.163390 TCCCTCTATCTCCTTATTTTCCCC 58.837 45.833 0.00 0.00 0.00 4.81
1342 1426 3.708563 TTCTTGCTGCCACAAAACTAC 57.291 42.857 0.00 0.00 0.00 2.73
1343 1427 2.930950 TCTTGCTGCCACAAAACTACT 58.069 42.857 0.00 0.00 0.00 2.57
1344 1428 3.287222 TCTTGCTGCCACAAAACTACTT 58.713 40.909 0.00 0.00 0.00 2.24
1345 1429 4.456535 TCTTGCTGCCACAAAACTACTTA 58.543 39.130 0.00 0.00 0.00 2.24
1350 1434 4.083802 GCTGCCACAAAACTACTTAGTCAG 60.084 45.833 0.00 0.00 34.99 3.51
1395 1479 0.027455 TTCTGTCAAACAAGCGCACG 59.973 50.000 11.47 1.39 0.00 5.34
1437 1521 2.565841 GGACAGACTGCAACTTGAGTT 58.434 47.619 1.25 0.00 39.12 3.01
1449 1533 4.609691 AACTTGAGTTGTACCACAAACG 57.390 40.909 0.00 0.00 40.15 3.60
1518 1606 2.143122 ACTATGTTGTCGCCTTGTGTG 58.857 47.619 0.00 0.00 0.00 3.82
1519 1607 2.143122 CTATGTTGTCGCCTTGTGTGT 58.857 47.619 0.00 0.00 0.00 3.72
1552 1640 1.324134 CAAGTTTGTTTGGCAAGTGCG 59.676 47.619 0.00 0.00 43.26 5.34
1566 1654 0.322456 AGTGCGCTGCCCAATTTAGA 60.322 50.000 9.73 0.00 0.00 2.10
1567 1655 0.740737 GTGCGCTGCCCAATTTAGAT 59.259 50.000 9.73 0.00 0.00 1.98
1587 1675 6.205101 AGATGATTGAGCCAAATGAAGAAC 57.795 37.500 0.00 0.00 0.00 3.01
1633 1721 7.493320 CACAATAAACCAAATCTGGATGAATGG 59.507 37.037 0.00 0.00 46.92 3.16
1672 1760 7.033791 TGTTTAATCTAGACTCAGTTTAGGCG 58.966 38.462 2.62 0.00 0.00 5.52
1678 1973 2.428890 AGACTCAGTTTAGGCGAGGATG 59.571 50.000 0.00 0.00 0.00 3.51
1689 1984 1.071605 GCGAGGATGTGTTCTGTCAC 58.928 55.000 0.00 0.00 38.63 3.67
1772 2069 0.095245 GTTGCACATGTGACCGATCG 59.905 55.000 29.80 8.51 0.00 3.69
2002 2304 2.221169 CAGCTGCCACAAAACTAGTCA 58.779 47.619 0.00 0.00 0.00 3.41
2007 2309 4.455877 GCTGCCACAAAACTAGTCAACTAT 59.544 41.667 0.00 0.00 0.00 2.12
2029 2331 8.999895 ACTATGAATGTTTAGGTAAGGGTATGT 58.000 33.333 0.00 0.00 0.00 2.29
2032 2334 7.114095 TGAATGTTTAGGTAAGGGTATGTTCC 58.886 38.462 0.00 0.00 0.00 3.62
2073 2375 2.683362 GGATTTGTCGCCCTTTTAGGAG 59.317 50.000 0.00 0.00 37.67 3.69
2074 2376 2.943036 TTTGTCGCCCTTTTAGGAGT 57.057 45.000 0.00 0.00 37.67 3.85
2075 2377 2.943036 TTGTCGCCCTTTTAGGAGTT 57.057 45.000 0.00 0.00 37.67 3.01
2095 2397 0.109342 AGGACAGACTGCAACTTGGG 59.891 55.000 1.25 0.00 0.00 4.12
2100 2402 1.103398 AGACTGCAACTTGGGTGCAC 61.103 55.000 8.80 8.80 34.61 4.57
2141 2443 2.966516 GACCGATTAGGAGGGACAAGAT 59.033 50.000 0.00 0.00 45.00 2.40
2155 2458 3.057526 GGACAAGATACCCAAAAGTGTGC 60.058 47.826 0.00 0.00 0.00 4.57
2268 2571 5.186996 TCCTTTGAAACAGATTGCAACTC 57.813 39.130 0.00 0.70 0.00 3.01
2275 2591 2.596452 ACAGATTGCAACTCGAGTACG 58.404 47.619 20.39 14.31 41.26 3.67
2276 2592 1.321743 CAGATTGCAACTCGAGTACGC 59.678 52.381 25.39 25.39 39.58 4.42
2277 2593 1.067846 AGATTGCAACTCGAGTACGCA 60.068 47.619 28.99 28.99 39.58 5.24
2278 2594 1.927174 GATTGCAACTCGAGTACGCAT 59.073 47.619 31.49 23.68 36.75 4.73
2279 2595 2.640346 TTGCAACTCGAGTACGCATA 57.360 45.000 31.49 22.47 36.75 3.14
2280 2596 2.863401 TGCAACTCGAGTACGCATAT 57.137 45.000 28.99 8.01 39.58 1.78
2281 2597 2.459934 TGCAACTCGAGTACGCATATG 58.540 47.619 28.99 18.95 39.58 1.78
2282 2598 2.159296 TGCAACTCGAGTACGCATATGT 60.159 45.455 28.99 6.64 39.58 2.29
2283 2599 2.858344 GCAACTCGAGTACGCATATGTT 59.142 45.455 26.55 4.40 39.58 2.71
2284 2600 3.306166 GCAACTCGAGTACGCATATGTTT 59.694 43.478 26.55 3.92 39.58 2.83
2285 2601 4.201685 GCAACTCGAGTACGCATATGTTTT 60.202 41.667 26.55 3.73 39.58 2.43
2286 2602 5.005012 GCAACTCGAGTACGCATATGTTTTA 59.995 40.000 26.55 0.00 39.58 1.52
2287 2603 6.400422 CAACTCGAGTACGCATATGTTTTAC 58.600 40.000 20.39 3.85 39.58 2.01
2291 2607 5.286797 TCGAGTACGCATATGTTTTACACAC 59.713 40.000 4.29 0.52 37.58 3.82
2299 2615 5.125417 GCATATGTTTTACACACCTGACCAT 59.875 40.000 4.29 0.00 38.61 3.55
2321 2637 5.744666 TTTAGGAGAAACGACCAAAACTG 57.255 39.130 0.00 0.00 0.00 3.16
2328 2644 6.445357 AGAAACGACCAAAACTGTGTTATT 57.555 33.333 0.00 0.00 0.00 1.40
2361 2677 2.305928 TGTGTGGACAGGATTGTTTGG 58.694 47.619 0.00 0.00 37.76 3.28
2365 2681 2.094545 GTGGACAGGATTGTTTGGCATC 60.095 50.000 0.00 0.00 37.76 3.91
2408 2727 6.821665 CCGATTAAGACAAATAAAGAGACCCA 59.178 38.462 0.00 0.00 0.00 4.51
2426 2745 2.224867 CCCACTTTGATGTCCTTCAGGT 60.225 50.000 0.00 0.00 36.34 4.00
2438 2757 2.567169 TCCTTCAGGTCATGTCGATGTT 59.433 45.455 0.00 0.00 36.34 2.71
2456 2775 4.305989 TGTTCAAACTTTGCATCCAGTC 57.694 40.909 0.00 0.00 0.00 3.51
2496 2815 5.163519 GGAATTTGGAACATGTATGTCAGGG 60.164 44.000 0.00 0.00 40.80 4.45
2503 2822 6.213802 TGGAACATGTATGTCAGGGTAGTAAA 59.786 38.462 0.00 0.00 40.80 2.01
2504 2823 6.537660 GGAACATGTATGTCAGGGTAGTAAAC 59.462 42.308 0.00 0.00 40.80 2.01
2505 2824 6.869206 ACATGTATGTCAGGGTAGTAAACT 57.131 37.500 0.00 0.00 35.87 2.66
2506 2825 7.966339 ACATGTATGTCAGGGTAGTAAACTA 57.034 36.000 0.00 0.00 35.87 2.24
2507 2826 8.008513 ACATGTATGTCAGGGTAGTAAACTAG 57.991 38.462 0.00 0.00 35.87 2.57
2508 2827 7.837689 ACATGTATGTCAGGGTAGTAAACTAGA 59.162 37.037 0.00 0.00 35.87 2.43
2518 2837 8.688151 CAGGGTAGTAAACTAGATAGATATGCC 58.312 40.741 0.00 0.00 0.00 4.40
2538 2857 4.024387 TGCCGATTGTTTCAACTCTTGTAC 60.024 41.667 0.00 0.00 0.00 2.90
2587 2906 6.017109 CCAAACTCTTGTACTATGTTGTTGCT 60.017 38.462 0.00 0.00 0.00 3.91
2588 2907 7.417612 CAAACTCTTGTACTATGTTGTTGCTT 58.582 34.615 0.00 0.00 0.00 3.91
2589 2908 7.568199 AACTCTTGTACTATGTTGTTGCTTT 57.432 32.000 0.00 0.00 0.00 3.51
2593 2912 6.695278 TCTTGTACTATGTTGTTGCTTTTTGC 59.305 34.615 0.00 0.00 43.25 3.68
2807 3251 0.250234 TCTCATTTGCAGGTCTCCGG 59.750 55.000 0.00 0.00 0.00 5.14
2823 3267 4.626172 GTCTCCGGTGTTCTTTTCTATGTC 59.374 45.833 0.00 0.00 0.00 3.06
2846 3290 7.287927 TGTCTTCATCTAGGACTGGTTATAAGG 59.712 40.741 0.00 0.00 0.00 2.69
3308 3756 4.461081 TGTGGCTGTAAGTTCACTTGTTTT 59.539 37.500 2.26 0.00 39.63 2.43
3332 3780 1.767759 AGTCATTGCCTGTATTGCCC 58.232 50.000 0.00 0.00 0.00 5.36
3471 3921 6.878317 TGTCTATACATATATGGCCAAGCTC 58.122 40.000 10.96 0.00 0.00 4.09
3584 4067 5.049336 CCTGCAGATCTAATCTTGCTTCATG 60.049 44.000 17.39 0.00 37.58 3.07
3606 4089 8.758829 TCATGTAGTATTATGTGGACTGAACTT 58.241 33.333 0.00 0.00 0.00 2.66
3737 4969 5.810587 GCTTGTTTCCATTACACGAGATCTA 59.189 40.000 0.00 0.00 0.00 1.98
3745 4978 8.002984 TCCATTACACGAGATCTACATGTTTA 57.997 34.615 2.30 0.00 0.00 2.01
3936 5169 9.823098 AATGCGTTTATTACTACTATCTACTCG 57.177 33.333 0.00 0.00 0.00 4.18
3951 5184 3.952323 TCTACTCGATGGAACCTACTTGG 59.048 47.826 0.00 0.00 42.93 3.61
4208 5443 3.808174 GCTCGTCCAACTAGTGAAAAGTT 59.192 43.478 0.00 0.00 37.67 2.66
4211 5446 6.147328 GCTCGTCCAACTAGTGAAAAGTTATT 59.853 38.462 0.00 0.00 35.44 1.40
4399 5638 1.372683 GTCCTGGAGTTGCTGCTGA 59.627 57.895 0.00 0.00 0.00 4.26
4456 5695 1.963338 GTGACCAGGCTGCAGTGAC 60.963 63.158 16.64 3.23 0.00 3.67
4482 5721 7.397892 TCAGATTGGAATATCCGTCTCTATC 57.602 40.000 2.28 0.00 40.17 2.08
4534 5773 0.534873 ACCTTTGCTTTGTTTGCCGT 59.465 45.000 0.00 0.00 0.00 5.68
4632 5882 6.039616 TGGAAACTTGATTTTGTCTTTTCGG 58.960 36.000 0.00 0.00 0.00 4.30
4862 6116 3.882888 ACAAGTGATCGTTTGTGGTCATT 59.117 39.130 12.29 0.00 36.26 2.57
4890 6144 4.857871 ATGTATCGTTGTGCACATACAC 57.142 40.909 25.52 18.39 41.10 2.90
5082 6338 8.040727 AGTTTTATTTTCTTGCAGACTTGGTTT 58.959 29.630 0.00 0.00 0.00 3.27
5123 6379 6.838198 TGATCGTACCATTTCCTATTTTCG 57.162 37.500 0.00 0.00 0.00 3.46
5201 6457 9.868277 CAGACAAAATAATCTCAGAGAACTACT 57.132 33.333 3.63 0.00 0.00 2.57
5248 6875 8.290325 GCTTAGTTTACTTGTTGTAATCTGCTT 58.710 33.333 8.52 0.00 39.87 3.91
5258 6885 4.678509 TGTAATCTGCTTGGCTTTTACG 57.321 40.909 0.00 0.00 0.00 3.18
5308 6936 1.198713 AGTTGAGGACCTCATGCGAT 58.801 50.000 24.85 6.80 40.39 4.58
5313 6941 1.410517 GAGGACCTCATGCGATCTTGA 59.589 52.381 17.10 0.00 0.00 3.02
5317 6945 2.611292 GACCTCATGCGATCTTGAAAGG 59.389 50.000 0.00 0.00 0.00 3.11
5338 6966 2.027837 GCATTGCCCAAGGTTTCTCATT 60.028 45.455 0.00 0.00 0.00 2.57
5356 6984 5.702670 TCTCATTAGCCTTCAAAGTCAACTG 59.297 40.000 0.00 0.00 0.00 3.16
5359 6987 7.168219 TCATTAGCCTTCAAAGTCAACTGTAT 58.832 34.615 0.00 0.00 0.00 2.29
5362 6990 9.686683 ATTAGCCTTCAAAGTCAACTGTATAAT 57.313 29.630 0.00 0.00 0.00 1.28
5366 6994 9.109393 GCCTTCAAAGTCAACTGTATAATGATA 57.891 33.333 0.00 0.00 0.00 2.15
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 1.673033 CCAATCCACGCTTTCTCTCGT 60.673 52.381 0.00 0.00 39.79 4.18
2 3 1.002366 CCAATCCACGCTTTCTCTCG 58.998 55.000 0.00 0.00 0.00 4.04
3 4 2.386661 TCCAATCCACGCTTTCTCTC 57.613 50.000 0.00 0.00 0.00 3.20
4 5 3.274288 GAATCCAATCCACGCTTTCTCT 58.726 45.455 0.00 0.00 0.00 3.10
5 6 2.030946 CGAATCCAATCCACGCTTTCTC 59.969 50.000 0.00 0.00 0.00 2.87
6 7 2.009774 CGAATCCAATCCACGCTTTCT 58.990 47.619 0.00 0.00 0.00 2.52
7 8 1.064060 CCGAATCCAATCCACGCTTTC 59.936 52.381 0.00 0.00 0.00 2.62
8 9 1.094785 CCGAATCCAATCCACGCTTT 58.905 50.000 0.00 0.00 0.00 3.51
9 10 0.035439 ACCGAATCCAATCCACGCTT 60.035 50.000 0.00 0.00 0.00 4.68
10 11 0.035439 AACCGAATCCAATCCACGCT 60.035 50.000 0.00 0.00 0.00 5.07
11 12 0.808755 AAACCGAATCCAATCCACGC 59.191 50.000 0.00 0.00 0.00 5.34
12 13 1.467374 GCAAACCGAATCCAATCCACG 60.467 52.381 0.00 0.00 0.00 4.94
13 14 1.543802 TGCAAACCGAATCCAATCCAC 59.456 47.619 0.00 0.00 0.00 4.02
14 15 1.916506 TGCAAACCGAATCCAATCCA 58.083 45.000 0.00 0.00 0.00 3.41
15 16 3.525268 AATGCAAACCGAATCCAATCC 57.475 42.857 0.00 0.00 0.00 3.01
16 17 6.863126 CCTATAAATGCAAACCGAATCCAATC 59.137 38.462 0.00 0.00 0.00 2.67
17 18 6.239289 CCCTATAAATGCAAACCGAATCCAAT 60.239 38.462 0.00 0.00 0.00 3.16
18 19 5.068460 CCCTATAAATGCAAACCGAATCCAA 59.932 40.000 0.00 0.00 0.00 3.53
19 20 4.582656 CCCTATAAATGCAAACCGAATCCA 59.417 41.667 0.00 0.00 0.00 3.41
20 21 4.583073 ACCCTATAAATGCAAACCGAATCC 59.417 41.667 0.00 0.00 0.00 3.01
21 22 5.767816 ACCCTATAAATGCAAACCGAATC 57.232 39.130 0.00 0.00 0.00 2.52
22 23 6.071051 ACAAACCCTATAAATGCAAACCGAAT 60.071 34.615 0.00 0.00 0.00 3.34
23 24 5.244178 ACAAACCCTATAAATGCAAACCGAA 59.756 36.000 0.00 0.00 0.00 4.30
24 25 4.767928 ACAAACCCTATAAATGCAAACCGA 59.232 37.500 0.00 0.00 0.00 4.69
25 26 5.066968 ACAAACCCTATAAATGCAAACCG 57.933 39.130 0.00 0.00 0.00 4.44
26 27 7.737972 AAAACAAACCCTATAAATGCAAACC 57.262 32.000 0.00 0.00 0.00 3.27
27 28 8.831550 TGAAAAACAAACCCTATAAATGCAAAC 58.168 29.630 0.00 0.00 0.00 2.93
28 29 8.964476 TGAAAAACAAACCCTATAAATGCAAA 57.036 26.923 0.00 0.00 0.00 3.68
29 30 8.964476 TTGAAAAACAAACCCTATAAATGCAA 57.036 26.923 0.00 0.00 35.39 4.08
30 31 8.424918 TCTTGAAAAACAAACCCTATAAATGCA 58.575 29.630 0.00 0.00 38.08 3.96
31 32 8.825667 TCTTGAAAAACAAACCCTATAAATGC 57.174 30.769 0.00 0.00 38.08 3.56
32 33 9.981114 ACTCTTGAAAAACAAACCCTATAAATG 57.019 29.630 0.00 0.00 38.08 2.32
34 35 8.635328 GGACTCTTGAAAAACAAACCCTATAAA 58.365 33.333 0.00 0.00 38.08 1.40
35 36 7.231925 GGGACTCTTGAAAAACAAACCCTATAA 59.768 37.037 0.00 0.00 38.08 0.98
36 37 6.717997 GGGACTCTTGAAAAACAAACCCTATA 59.282 38.462 0.00 0.00 38.08 1.31
37 38 5.538813 GGGACTCTTGAAAAACAAACCCTAT 59.461 40.000 0.00 0.00 38.08 2.57
38 39 4.891168 GGGACTCTTGAAAAACAAACCCTA 59.109 41.667 0.00 0.00 38.08 3.53
39 40 3.704566 GGGACTCTTGAAAAACAAACCCT 59.295 43.478 0.00 0.00 38.08 4.34
40 41 3.181469 GGGGACTCTTGAAAAACAAACCC 60.181 47.826 0.00 0.00 38.08 4.11
41 42 3.490249 CGGGGACTCTTGAAAAACAAACC 60.490 47.826 0.00 0.00 38.08 3.27
42 43 3.702330 CGGGGACTCTTGAAAAACAAAC 58.298 45.455 0.00 0.00 38.08 2.93
43 44 2.100087 GCGGGGACTCTTGAAAAACAAA 59.900 45.455 0.00 0.00 38.08 2.83
44 45 1.679153 GCGGGGACTCTTGAAAAACAA 59.321 47.619 0.00 0.00 36.97 2.83
45 46 1.133915 AGCGGGGACTCTTGAAAAACA 60.134 47.619 0.00 0.00 0.00 2.83
46 47 1.535896 GAGCGGGGACTCTTGAAAAAC 59.464 52.381 0.00 0.00 33.69 2.43
47 48 1.420138 AGAGCGGGGACTCTTGAAAAA 59.580 47.619 0.00 0.00 44.76 1.94
48 49 1.056660 AGAGCGGGGACTCTTGAAAA 58.943 50.000 0.00 0.00 44.76 2.29
49 50 2.759985 AGAGCGGGGACTCTTGAAA 58.240 52.632 0.00 0.00 44.76 2.69
50 51 4.541213 AGAGCGGGGACTCTTGAA 57.459 55.556 0.00 0.00 44.76 2.69
55 56 1.045911 AGATCCAAGAGCGGGGACTC 61.046 60.000 0.00 0.00 35.67 3.36
56 57 1.002274 AGATCCAAGAGCGGGGACT 59.998 57.895 0.00 0.00 35.67 3.85
57 58 1.144936 CAGATCCAAGAGCGGGGAC 59.855 63.158 0.00 0.00 35.67 4.46
58 59 1.001631 TCAGATCCAAGAGCGGGGA 59.998 57.895 0.00 0.00 37.64 4.81
59 60 1.144936 GTCAGATCCAAGAGCGGGG 59.855 63.158 0.00 0.00 0.00 5.73
60 61 1.144936 GGTCAGATCCAAGAGCGGG 59.855 63.158 0.00 0.00 0.00 6.13
61 62 0.179089 CAGGTCAGATCCAAGAGCGG 60.179 60.000 0.00 0.00 37.34 5.52
62 63 0.809241 GCAGGTCAGATCCAAGAGCG 60.809 60.000 0.00 0.00 37.34 5.03
63 64 0.809241 CGCAGGTCAGATCCAAGAGC 60.809 60.000 0.00 0.00 0.00 4.09
64 65 3.359194 CGCAGGTCAGATCCAAGAG 57.641 57.895 0.00 0.00 0.00 2.85
78 79 0.811281 GAACCCAAATTCCTCCGCAG 59.189 55.000 0.00 0.00 0.00 5.18
79 80 0.610785 GGAACCCAAATTCCTCCGCA 60.611 55.000 0.00 0.00 44.24 5.69
80 81 2.189833 GGAACCCAAATTCCTCCGC 58.810 57.895 0.00 0.00 44.24 5.54
86 87 3.253432 GCGGATATGAGGAACCCAAATTC 59.747 47.826 0.00 0.00 0.00 2.17
87 88 3.222603 GCGGATATGAGGAACCCAAATT 58.777 45.455 0.00 0.00 0.00 1.82
88 89 2.489073 GGCGGATATGAGGAACCCAAAT 60.489 50.000 0.00 0.00 0.00 2.32
89 90 1.133915 GGCGGATATGAGGAACCCAAA 60.134 52.381 0.00 0.00 0.00 3.28
90 91 0.472471 GGCGGATATGAGGAACCCAA 59.528 55.000 0.00 0.00 0.00 4.12
91 92 1.754380 CGGCGGATATGAGGAACCCA 61.754 60.000 0.00 0.00 0.00 4.51
92 93 1.004918 CGGCGGATATGAGGAACCC 60.005 63.158 0.00 0.00 0.00 4.11
93 94 1.668151 GCGGCGGATATGAGGAACC 60.668 63.158 9.78 0.00 0.00 3.62
94 95 1.069090 TGCGGCGGATATGAGGAAC 59.931 57.895 9.78 0.00 0.00 3.62
95 96 1.069090 GTGCGGCGGATATGAGGAA 59.931 57.895 9.78 0.00 0.00 3.36
96 97 2.131067 TGTGCGGCGGATATGAGGA 61.131 57.895 9.78 0.00 0.00 3.71
97 98 1.956170 GTGTGCGGCGGATATGAGG 60.956 63.158 9.78 0.00 0.00 3.86
98 99 0.601046 ATGTGTGCGGCGGATATGAG 60.601 55.000 9.78 0.00 0.00 2.90
99 100 0.879839 CATGTGTGCGGCGGATATGA 60.880 55.000 9.78 0.00 0.00 2.15
100 101 1.570967 CATGTGTGCGGCGGATATG 59.429 57.895 9.78 8.85 0.00 1.78
101 102 1.597854 CCATGTGTGCGGCGGATAT 60.598 57.895 9.78 0.00 0.00 1.63
102 103 2.203001 CCATGTGTGCGGCGGATA 60.203 61.111 9.78 0.00 0.00 2.59
109 110 1.295357 TAAACTCGGCCATGTGTGCG 61.295 55.000 2.24 0.00 0.00 5.34
110 111 0.878416 TTAAACTCGGCCATGTGTGC 59.122 50.000 2.24 0.00 0.00 4.57
111 112 2.416547 CTCTTAAACTCGGCCATGTGTG 59.583 50.000 2.24 0.00 0.00 3.82
112 113 2.615493 CCTCTTAAACTCGGCCATGTGT 60.615 50.000 2.24 0.00 0.00 3.72
113 114 2.009774 CCTCTTAAACTCGGCCATGTG 58.990 52.381 2.24 0.00 0.00 3.21
114 115 1.628846 ACCTCTTAAACTCGGCCATGT 59.371 47.619 2.24 0.00 0.00 3.21
115 116 2.009774 CACCTCTTAAACTCGGCCATG 58.990 52.381 2.24 0.00 0.00 3.66
116 117 1.628846 ACACCTCTTAAACTCGGCCAT 59.371 47.619 2.24 0.00 0.00 4.40
117 118 1.001633 GACACCTCTTAAACTCGGCCA 59.998 52.381 2.24 0.00 0.00 5.36
118 119 1.723220 GACACCTCTTAAACTCGGCC 58.277 55.000 0.00 0.00 0.00 6.13
119 120 1.347320 CGACACCTCTTAAACTCGGC 58.653 55.000 0.00 0.00 0.00 5.54
120 121 1.542915 TCCGACACCTCTTAAACTCGG 59.457 52.381 0.00 0.00 41.67 4.63
121 122 2.030540 TGTCCGACACCTCTTAAACTCG 60.031 50.000 0.00 0.00 0.00 4.18
122 123 3.655276 TGTCCGACACCTCTTAAACTC 57.345 47.619 0.00 0.00 0.00 3.01
123 124 3.387050 AGTTGTCCGACACCTCTTAAACT 59.613 43.478 0.00 0.00 0.00 2.66
124 125 3.725490 AGTTGTCCGACACCTCTTAAAC 58.275 45.455 0.00 0.00 0.00 2.01
125 126 4.124238 CAAGTTGTCCGACACCTCTTAAA 58.876 43.478 0.00 0.00 0.00 1.52
126 127 3.385433 TCAAGTTGTCCGACACCTCTTAA 59.615 43.478 0.00 0.00 0.00 1.85
127 128 2.960384 TCAAGTTGTCCGACACCTCTTA 59.040 45.455 0.00 0.00 0.00 2.10
128 129 1.760613 TCAAGTTGTCCGACACCTCTT 59.239 47.619 0.00 4.15 0.00 2.85
129 130 1.410004 TCAAGTTGTCCGACACCTCT 58.590 50.000 0.00 0.00 0.00 3.69
130 131 1.865340 GTTCAAGTTGTCCGACACCTC 59.135 52.381 0.00 0.00 0.00 3.85
131 132 1.805120 CGTTCAAGTTGTCCGACACCT 60.805 52.381 0.00 0.00 0.00 4.00
132 133 0.580104 CGTTCAAGTTGTCCGACACC 59.420 55.000 0.00 0.00 0.00 4.16
133 134 1.283736 ACGTTCAAGTTGTCCGACAC 58.716 50.000 18.84 0.00 0.00 3.67
134 135 2.012937 AACGTTCAAGTTGTCCGACA 57.987 45.000 18.84 0.00 32.39 4.35
135 136 2.538132 CCAAACGTTCAAGTTGTCCGAC 60.538 50.000 18.84 7.36 34.14 4.79
136 137 1.666700 CCAAACGTTCAAGTTGTCCGA 59.333 47.619 18.84 0.00 34.14 4.55
137 138 1.858399 GCCAAACGTTCAAGTTGTCCG 60.858 52.381 0.00 12.96 34.14 4.79
138 139 1.535226 GGCCAAACGTTCAAGTTGTCC 60.535 52.381 0.00 0.00 34.14 4.02
139 140 1.404035 AGGCCAAACGTTCAAGTTGTC 59.596 47.619 5.01 0.00 34.14 3.18
140 141 1.134175 CAGGCCAAACGTTCAAGTTGT 59.866 47.619 5.01 0.00 34.14 3.32
141 142 1.403679 TCAGGCCAAACGTTCAAGTTG 59.596 47.619 5.01 0.00 34.14 3.16
142 143 1.404035 GTCAGGCCAAACGTTCAAGTT 59.596 47.619 5.01 0.00 35.59 2.66
143 144 1.021968 GTCAGGCCAAACGTTCAAGT 58.978 50.000 5.01 0.00 0.00 3.16
144 145 1.308998 AGTCAGGCCAAACGTTCAAG 58.691 50.000 5.01 0.00 0.00 3.02
145 146 1.757682 AAGTCAGGCCAAACGTTCAA 58.242 45.000 5.01 0.00 0.00 2.69
146 147 1.403679 CAAAGTCAGGCCAAACGTTCA 59.596 47.619 5.01 0.00 0.00 3.18
147 148 1.673920 TCAAAGTCAGGCCAAACGTTC 59.326 47.619 5.01 0.00 0.00 3.95
148 149 1.676006 CTCAAAGTCAGGCCAAACGTT 59.324 47.619 5.01 4.02 0.00 3.99
149 150 1.308998 CTCAAAGTCAGGCCAAACGT 58.691 50.000 5.01 0.00 0.00 3.99
150 151 0.593128 CCTCAAAGTCAGGCCAAACG 59.407 55.000 5.01 0.00 0.00 3.60
151 152 0.961753 CCCTCAAAGTCAGGCCAAAC 59.038 55.000 5.01 1.66 0.00 2.93
152 153 0.827507 GCCCTCAAAGTCAGGCCAAA 60.828 55.000 5.01 0.00 39.60 3.28
153 154 1.228552 GCCCTCAAAGTCAGGCCAA 60.229 57.895 5.01 0.00 39.60 4.52
154 155 2.436109 GCCCTCAAAGTCAGGCCA 59.564 61.111 5.01 0.00 39.60 5.36
156 157 0.107459 CTAGGCCCTCAAAGTCAGGC 60.107 60.000 0.00 0.00 44.99 4.85
157 158 1.280457 ACTAGGCCCTCAAAGTCAGG 58.720 55.000 0.00 0.00 0.00 3.86
158 159 4.553330 TTAACTAGGCCCTCAAAGTCAG 57.447 45.455 0.00 0.00 0.00 3.51
159 160 4.986054 TTTAACTAGGCCCTCAAAGTCA 57.014 40.909 0.00 0.00 0.00 3.41
160 161 4.640647 CCATTTAACTAGGCCCTCAAAGTC 59.359 45.833 0.00 0.00 0.00 3.01
161 162 4.600062 CCATTTAACTAGGCCCTCAAAGT 58.400 43.478 0.00 0.00 0.00 2.66
162 163 3.381590 GCCATTTAACTAGGCCCTCAAAG 59.618 47.826 0.00 0.00 42.58 2.77
163 164 3.361786 GCCATTTAACTAGGCCCTCAAA 58.638 45.455 0.00 0.00 42.58 2.69
164 165 3.012934 GCCATTTAACTAGGCCCTCAA 57.987 47.619 0.00 0.00 42.58 3.02
165 166 2.729028 GCCATTTAACTAGGCCCTCA 57.271 50.000 0.00 0.00 42.58 3.86
189 190 5.822278 TCGAACAATGTTCGGATTGAAAAA 58.178 33.333 37.32 19.19 41.78 1.94
190 191 5.425577 TCGAACAATGTTCGGATTGAAAA 57.574 34.783 37.32 19.81 41.78 2.29
191 192 4.612712 GCTCGAACAATGTTCGGATTGAAA 60.613 41.667 37.32 21.35 41.78 2.69
192 193 3.120338 GCTCGAACAATGTTCGGATTGAA 60.120 43.478 37.32 21.96 41.78 2.69
193 194 2.415168 GCTCGAACAATGTTCGGATTGA 59.585 45.455 37.32 22.56 41.78 2.57
194 195 2.416547 AGCTCGAACAATGTTCGGATTG 59.583 45.455 37.32 26.95 41.78 2.67
195 196 2.416547 CAGCTCGAACAATGTTCGGATT 59.583 45.455 37.32 24.01 41.78 3.01
196 197 2.002586 CAGCTCGAACAATGTTCGGAT 58.997 47.619 37.32 27.03 41.78 4.18
197 198 1.270094 ACAGCTCGAACAATGTTCGGA 60.270 47.619 37.32 25.85 41.78 4.55
198 199 1.148310 ACAGCTCGAACAATGTTCGG 58.852 50.000 37.32 29.65 41.78 4.30
199 200 2.827555 GAACAGCTCGAACAATGTTCG 58.172 47.619 34.51 34.51 41.31 3.95
420 421 0.037017 TGGCCCCTTCGATCGAAAAA 59.963 50.000 28.79 9.81 33.34 1.94
421 422 0.675522 GTGGCCCCTTCGATCGAAAA 60.676 55.000 28.79 10.56 33.34 2.29
422 423 1.078708 GTGGCCCCTTCGATCGAAA 60.079 57.895 28.79 12.34 33.34 3.46
423 424 2.287274 TGTGGCCCCTTCGATCGAA 61.287 57.895 27.54 27.54 0.00 3.71
424 425 2.682136 TGTGGCCCCTTCGATCGA 60.682 61.111 15.15 15.15 0.00 3.59
425 426 2.511600 GTGTGGCCCCTTCGATCG 60.512 66.667 9.36 9.36 0.00 3.69
426 427 2.511600 CGTGTGGCCCCTTCGATC 60.512 66.667 0.00 0.00 0.00 3.69
427 428 4.096003 CCGTGTGGCCCCTTCGAT 62.096 66.667 0.00 0.00 0.00 3.59
437 438 2.213513 AAAAATGGGGGCCGTGTGG 61.214 57.895 0.00 0.00 38.77 4.17
438 439 3.465701 AAAAATGGGGGCCGTGTG 58.534 55.556 0.00 0.00 0.00 3.82
477 478 9.103861 CAAAAGAGTGGTTAATTTGCCTAAAAA 57.896 29.630 0.00 0.00 0.00 1.94
478 479 8.261522 ACAAAAGAGTGGTTAATTTGCCTAAAA 58.738 29.630 0.00 0.00 35.05 1.52
479 480 7.708752 CACAAAAGAGTGGTTAATTTGCCTAAA 59.291 33.333 0.00 0.00 35.05 1.85
480 481 7.068839 TCACAAAAGAGTGGTTAATTTGCCTAA 59.931 33.333 0.00 0.00 39.93 2.69
481 482 6.547880 TCACAAAAGAGTGGTTAATTTGCCTA 59.452 34.615 0.00 0.00 39.93 3.93
482 483 5.362430 TCACAAAAGAGTGGTTAATTTGCCT 59.638 36.000 0.00 0.00 39.93 4.75
483 484 5.596845 TCACAAAAGAGTGGTTAATTTGCC 58.403 37.500 0.00 0.00 39.93 4.52
484 485 7.532682 TTTCACAAAAGAGTGGTTAATTTGC 57.467 32.000 0.00 0.00 39.93 3.68
491 492 9.719355 AGTTTTTATTTTCACAAAAGAGTGGTT 57.281 25.926 0.00 0.00 39.93 3.67
512 513 8.953313 CCCGTTAAAAGTTCATATCCTAGTTTT 58.047 33.333 0.00 0.00 0.00 2.43
513 514 7.555195 CCCCGTTAAAAGTTCATATCCTAGTTT 59.445 37.037 0.00 0.00 0.00 2.66
514 515 7.052248 CCCCGTTAAAAGTTCATATCCTAGTT 58.948 38.462 0.00 0.00 0.00 2.24
515 516 6.589135 CCCCGTTAAAAGTTCATATCCTAGT 58.411 40.000 0.00 0.00 0.00 2.57
516 517 5.469084 GCCCCGTTAAAAGTTCATATCCTAG 59.531 44.000 0.00 0.00 0.00 3.02
517 518 5.370679 GCCCCGTTAAAAGTTCATATCCTA 58.629 41.667 0.00 0.00 0.00 2.94
518 519 4.204799 GCCCCGTTAAAAGTTCATATCCT 58.795 43.478 0.00 0.00 0.00 3.24
519 520 3.317149 GGCCCCGTTAAAAGTTCATATCC 59.683 47.826 0.00 0.00 0.00 2.59
520 521 3.317149 GGGCCCCGTTAAAAGTTCATATC 59.683 47.826 12.23 0.00 0.00 1.63
521 522 3.293337 GGGCCCCGTTAAAAGTTCATAT 58.707 45.455 12.23 0.00 0.00 1.78
522 523 2.041350 TGGGCCCCGTTAAAAGTTCATA 59.959 45.455 22.27 0.00 0.00 2.15
523 524 1.203075 TGGGCCCCGTTAAAAGTTCAT 60.203 47.619 22.27 0.00 0.00 2.57
524 525 0.185416 TGGGCCCCGTTAAAAGTTCA 59.815 50.000 22.27 0.00 0.00 3.18
525 526 1.203758 CATGGGCCCCGTTAAAAGTTC 59.796 52.381 22.27 0.00 0.00 3.01
526 527 1.262417 CATGGGCCCCGTTAAAAGTT 58.738 50.000 22.27 0.00 0.00 2.66
527 528 0.613572 CCATGGGCCCCGTTAAAAGT 60.614 55.000 22.27 0.00 0.00 2.66
528 529 0.323908 TCCATGGGCCCCGTTAAAAG 60.324 55.000 22.27 0.00 0.00 2.27
529 530 0.612453 GTCCATGGGCCCCGTTAAAA 60.612 55.000 22.27 0.00 0.00 1.52
530 531 1.000646 GTCCATGGGCCCCGTTAAA 60.001 57.895 22.27 0.00 0.00 1.52
531 532 1.917336 GAGTCCATGGGCCCCGTTAA 61.917 60.000 22.27 0.00 0.00 2.01
532 533 2.285818 AGTCCATGGGCCCCGTTA 60.286 61.111 22.27 0.00 0.00 3.18
533 534 3.728373 GAGTCCATGGGCCCCGTT 61.728 66.667 22.27 0.02 0.00 4.44
540 541 4.489771 GTGGGCCGAGTCCATGGG 62.490 72.222 13.02 0.00 40.40 4.00
541 542 4.838152 CGTGGGCCGAGTCCATGG 62.838 72.222 4.97 4.97 40.40 3.66
546 547 4.980805 TGTTGCGTGGGCCGAGTC 62.981 66.667 0.00 0.00 39.56 3.36
547 548 4.555709 TTGTTGCGTGGGCCGAGT 62.556 61.111 0.00 0.00 39.56 4.18
548 549 4.025401 GTTGTTGCGTGGGCCGAG 62.025 66.667 0.00 0.00 39.56 4.63
575 576 0.597118 AGATGAATCGAGCTCGCAGC 60.597 55.000 30.97 24.06 42.84 5.25
576 577 1.130140 CAGATGAATCGAGCTCGCAG 58.870 55.000 30.97 9.10 39.60 5.18
577 578 0.249197 CCAGATGAATCGAGCTCGCA 60.249 55.000 30.97 22.68 39.60 5.10
578 579 0.249238 ACCAGATGAATCGAGCTCGC 60.249 55.000 30.97 17.63 39.60 5.03
579 580 1.336440 AGACCAGATGAATCGAGCTCG 59.664 52.381 30.03 30.03 41.45 5.03
580 581 2.288152 GGAGACCAGATGAATCGAGCTC 60.288 54.545 2.73 2.73 0.00 4.09
581 582 1.686052 GGAGACCAGATGAATCGAGCT 59.314 52.381 0.00 0.00 0.00 4.09
582 583 1.601663 CGGAGACCAGATGAATCGAGC 60.602 57.143 0.00 0.00 0.00 5.03
583 584 1.000827 CCGGAGACCAGATGAATCGAG 60.001 57.143 0.00 0.00 0.00 4.04
584 585 1.032794 CCGGAGACCAGATGAATCGA 58.967 55.000 0.00 0.00 0.00 3.59
585 586 0.032678 CCCGGAGACCAGATGAATCG 59.967 60.000 0.73 0.00 0.00 3.34
586 587 0.394565 CCCCGGAGACCAGATGAATC 59.605 60.000 0.73 0.00 0.00 2.52
587 588 1.056700 CCCCCGGAGACCAGATGAAT 61.057 60.000 0.73 0.00 0.00 2.57
588 589 1.689233 CCCCCGGAGACCAGATGAA 60.689 63.158 0.73 0.00 0.00 2.57
589 590 2.041922 CCCCCGGAGACCAGATGA 60.042 66.667 0.73 0.00 0.00 2.92
590 591 3.866582 GCCCCCGGAGACCAGATG 61.867 72.222 0.73 0.00 0.00 2.90
591 592 4.095400 AGCCCCCGGAGACCAGAT 62.095 66.667 0.73 0.00 0.00 2.90
600 601 2.976494 ATATTTTCGCCAGCCCCCGG 62.976 60.000 0.00 0.00 0.00 5.73
601 602 0.250553 TATATTTTCGCCAGCCCCCG 60.251 55.000 0.00 0.00 0.00 5.73
602 603 2.215942 ATATATTTTCGCCAGCCCCC 57.784 50.000 0.00 0.00 0.00 5.40
603 604 3.126343 CGTTATATATTTTCGCCAGCCCC 59.874 47.826 0.00 0.00 0.00 5.80
604 605 3.425758 GCGTTATATATTTTCGCCAGCCC 60.426 47.826 13.84 0.00 40.83 5.19
605 606 3.187637 TGCGTTATATATTTTCGCCAGCC 59.812 43.478 18.70 1.66 45.06 4.85
606 607 4.394795 CTGCGTTATATATTTTCGCCAGC 58.605 43.478 18.70 5.22 45.06 4.85
607 608 4.688879 TCCTGCGTTATATATTTTCGCCAG 59.311 41.667 18.70 15.96 45.06 4.85
613 614 6.313744 GCAACCTCCTGCGTTATATATTTT 57.686 37.500 0.00 0.00 31.50 1.82
644 649 1.196808 CTTCTCTCTCGCTCTATCCGC 59.803 57.143 0.00 0.00 0.00 5.54
645 650 2.761559 TCTTCTCTCTCGCTCTATCCG 58.238 52.381 0.00 0.00 0.00 4.18
647 652 3.370978 CCGATCTTCTCTCTCGCTCTATC 59.629 52.174 0.00 0.00 0.00 2.08
649 654 2.365941 TCCGATCTTCTCTCTCGCTCTA 59.634 50.000 0.00 0.00 0.00 2.43
667 672 4.452455 CCCTAGAAATCCAAATCGAATCCG 59.548 45.833 0.00 0.00 37.07 4.18
769 779 7.443575 GGGGATCATATCTTATGGAAATCGATG 59.556 40.741 0.00 0.00 0.00 3.84
772 782 6.653020 TGGGGATCATATCTTATGGAAATCG 58.347 40.000 0.00 0.00 0.00 3.34
780 790 6.070538 CGAAGGAGTTGGGGATCATATCTTAT 60.071 42.308 0.00 0.00 0.00 1.73
781 791 5.246203 CGAAGGAGTTGGGGATCATATCTTA 59.754 44.000 0.00 0.00 0.00 2.10
832 851 3.225940 GGAATCTGGATGTGGGATTTCC 58.774 50.000 0.00 0.00 30.98 3.13
837 856 1.667595 TGTGGAATCTGGATGTGGGA 58.332 50.000 0.00 0.00 0.00 4.37
839 858 4.428294 AGTATGTGGAATCTGGATGTGG 57.572 45.455 0.00 0.00 0.00 4.17
841 860 5.608437 ACCATAGTATGTGGAATCTGGATGT 59.392 40.000 9.28 0.00 39.12 3.06
842 861 5.936372 CACCATAGTATGTGGAATCTGGATG 59.064 44.000 9.28 0.00 39.12 3.51
844 863 4.202357 GCACCATAGTATGTGGAATCTGGA 60.202 45.833 9.28 0.00 39.12 3.86
853 872 1.831389 GCGGCGCACCATAGTATGTG 61.831 60.000 29.21 8.43 34.57 3.21
1016 1057 1.074727 TCCGGGGAGAAAAGCAAATCA 59.925 47.619 0.00 0.00 0.00 2.57
1017 1058 1.834188 TCCGGGGAGAAAAGCAAATC 58.166 50.000 0.00 0.00 0.00 2.17
1018 1059 2.379005 GATCCGGGGAGAAAAGCAAAT 58.621 47.619 0.00 0.00 0.00 2.32
1019 1060 1.615919 GGATCCGGGGAGAAAAGCAAA 60.616 52.381 0.00 0.00 0.00 3.68
1020 1061 0.034477 GGATCCGGGGAGAAAAGCAA 60.034 55.000 0.00 0.00 0.00 3.91
1021 1062 1.607612 GGATCCGGGGAGAAAAGCA 59.392 57.895 0.00 0.00 0.00 3.91
1022 1063 1.523938 CGGATCCGGGGAGAAAAGC 60.524 63.158 26.95 0.00 35.56 3.51
1023 1064 0.759346 ATCGGATCCGGGGAGAAAAG 59.241 55.000 32.79 1.74 40.25 2.27
1140 1215 4.700448 TGCACCATGGCCCCTTGG 62.700 66.667 13.04 15.53 44.08 3.61
1278 1362 0.539438 AGGAGATAGAGGGAGCAGCG 60.539 60.000 0.00 0.00 0.00 5.18
1313 1397 6.542574 TTGTGGCAGCAAGAAAATTTATTG 57.457 33.333 8.56 8.56 0.00 1.90
1314 1398 7.282901 AGTTTTGTGGCAGCAAGAAAATTTATT 59.717 29.630 8.04 0.00 0.00 1.40
1317 1401 4.943093 AGTTTTGTGGCAGCAAGAAAATTT 59.057 33.333 8.04 0.00 0.00 1.82
1321 1405 3.699038 AGTAGTTTTGTGGCAGCAAGAAA 59.301 39.130 0.00 0.00 0.00 2.52
1342 1426 5.341617 CCTAAACGTTCCTAGCTGACTAAG 58.658 45.833 0.00 0.00 0.00 2.18
1343 1427 4.381292 GCCTAAACGTTCCTAGCTGACTAA 60.381 45.833 0.00 0.00 0.00 2.24
1344 1428 3.129988 GCCTAAACGTTCCTAGCTGACTA 59.870 47.826 0.00 0.00 0.00 2.59
1345 1429 2.094130 GCCTAAACGTTCCTAGCTGACT 60.094 50.000 0.00 0.00 0.00 3.41
1350 1434 2.007608 CCTTGCCTAAACGTTCCTAGC 58.992 52.381 0.00 3.35 0.00 3.42
1395 1479 3.253230 CAAAAGGGCGACAAATCCATTC 58.747 45.455 0.00 0.00 0.00 2.67
1437 1521 1.352404 GCAACGCGTTTGTGGTACA 59.648 52.632 24.21 0.00 37.54 2.90
1439 1523 1.352404 GTGCAACGCGTTTGTGGTA 59.648 52.632 24.21 7.82 37.54 3.25
1448 1532 2.127270 GGTCACATGTGCAACGCG 60.127 61.111 21.38 3.53 42.39 6.01
1449 1533 1.911293 ATCGGTCACATGTGCAACGC 61.911 55.000 21.38 8.18 42.39 4.84
1518 1606 3.005791 ACAAACTTGCTCCAATTGGCTAC 59.994 43.478 20.33 11.47 34.44 3.58
1519 1607 3.230134 ACAAACTTGCTCCAATTGGCTA 58.770 40.909 20.33 2.35 34.44 3.93
1552 1640 4.868067 CTCAATCATCTAAATTGGGCAGC 58.132 43.478 0.00 0.00 35.32 5.25
1566 1654 4.773674 TGGTTCTTCATTTGGCTCAATCAT 59.226 37.500 0.00 0.00 0.00 2.45
1567 1655 4.022068 GTGGTTCTTCATTTGGCTCAATCA 60.022 41.667 0.00 0.00 0.00 2.57
1587 1675 5.649557 TGTGATTTGACACAAAAAGAGTGG 58.350 37.500 0.00 0.00 45.81 4.00
1678 1973 1.846648 CGCTCGTGTGACAGAACAC 59.153 57.895 0.00 0.00 45.70 3.32
1707 2002 1.026718 CCGCCTCAAAAGGGCTACAG 61.027 60.000 3.25 0.00 46.73 2.74
1732 2027 0.179012 CGGTTGTGGTACCCCAAGTT 60.179 55.000 10.35 0.00 44.15 2.66
1772 2069 0.325272 GTTGGTCTCTTGTCCCTCCC 59.675 60.000 0.00 0.00 0.00 4.30
1817 2115 7.545362 ACAATCTTCTTCAATTATCCACTCG 57.455 36.000 0.00 0.00 0.00 4.18
1932 2234 3.692690 TCCCAACTAAAACTGGTATGGC 58.307 45.455 0.00 0.00 0.00 4.40
2002 2304 9.847224 CATACCCTTACCTAAACATTCATAGTT 57.153 33.333 0.00 0.00 0.00 2.24
2007 2309 7.114095 GGAACATACCCTTACCTAAACATTCA 58.886 38.462 0.00 0.00 0.00 2.57
2019 2321 5.423704 TTGATTGACGGAACATACCCTTA 57.576 39.130 0.00 0.00 0.00 2.69
2029 2331 1.866237 GTGCGCTTGATTGACGGAA 59.134 52.632 9.73 0.00 0.00 4.30
2032 2334 0.095245 ATTCGTGCGCTTGATTGACG 59.905 50.000 9.73 8.56 0.00 4.35
2073 2375 2.808543 CCAAGTTGCAGTCTGTCCTAAC 59.191 50.000 0.93 3.10 0.00 2.34
2074 2376 2.224523 CCCAAGTTGCAGTCTGTCCTAA 60.225 50.000 0.93 0.00 0.00 2.69
2075 2377 1.347707 CCCAAGTTGCAGTCTGTCCTA 59.652 52.381 0.93 0.00 0.00 2.94
2095 2397 0.179089 TGCAACACATTTGGGTGCAC 60.179 50.000 8.80 8.80 40.84 4.57
2141 2443 3.181438 ACATGGTAGCACACTTTTGGGTA 60.181 43.478 0.00 0.00 31.90 3.69
2155 2458 3.738982 TCAAGGTGACACAACATGGTAG 58.261 45.455 8.08 0.00 0.00 3.18
2268 2571 5.478001 GTGTGTAAAACATATGCGTACTCG 58.522 41.667 1.58 0.00 41.97 4.18
2275 2591 4.457603 TGGTCAGGTGTGTAAAACATATGC 59.542 41.667 1.58 0.00 41.97 3.14
2276 2592 6.757897 ATGGTCAGGTGTGTAAAACATATG 57.242 37.500 0.00 0.00 41.97 1.78
2277 2593 7.775053 AAATGGTCAGGTGTGTAAAACATAT 57.225 32.000 0.00 0.00 41.97 1.78
2278 2594 7.392113 CCTAAATGGTCAGGTGTGTAAAACATA 59.608 37.037 0.00 0.00 41.97 2.29
2279 2595 6.208599 CCTAAATGGTCAGGTGTGTAAAACAT 59.791 38.462 0.00 0.00 41.97 2.71
2280 2596 5.533154 CCTAAATGGTCAGGTGTGTAAAACA 59.467 40.000 0.00 0.00 36.04 2.83
2281 2597 5.766174 TCCTAAATGGTCAGGTGTGTAAAAC 59.234 40.000 0.00 0.00 37.07 2.43
2282 2598 5.942961 TCCTAAATGGTCAGGTGTGTAAAA 58.057 37.500 0.00 0.00 37.07 1.52
2283 2599 5.308497 TCTCCTAAATGGTCAGGTGTGTAAA 59.692 40.000 0.00 0.00 37.07 2.01
2284 2600 4.841813 TCTCCTAAATGGTCAGGTGTGTAA 59.158 41.667 0.00 0.00 37.07 2.41
2285 2601 4.422057 TCTCCTAAATGGTCAGGTGTGTA 58.578 43.478 0.00 0.00 37.07 2.90
2286 2602 3.248024 TCTCCTAAATGGTCAGGTGTGT 58.752 45.455 0.00 0.00 37.07 3.72
2287 2603 3.981071 TCTCCTAAATGGTCAGGTGTG 57.019 47.619 0.00 0.00 37.07 3.82
2291 2607 3.933332 GTCGTTTCTCCTAAATGGTCAGG 59.067 47.826 0.00 0.00 37.07 3.86
2299 2615 5.065474 CACAGTTTTGGTCGTTTCTCCTAAA 59.935 40.000 0.00 0.00 0.00 1.85
2321 2637 5.181245 ACACAAGGTGACAGCATAATAACAC 59.819 40.000 7.50 0.00 36.96 3.32
2361 2677 1.188863 AAATTGGACAGGGCAGATGC 58.811 50.000 0.00 0.00 41.14 3.91
2365 2681 1.106285 GGCTAAATTGGACAGGGCAG 58.894 55.000 0.00 0.00 0.00 4.85
2373 2689 7.639113 ATTTGTCTTAATCGGCTAAATTGGA 57.361 32.000 0.00 0.00 0.00 3.53
2403 2722 3.077359 CTGAAGGACATCAAAGTGGGTC 58.923 50.000 0.00 0.00 0.00 4.46
2408 2727 4.202503 ACATGACCTGAAGGACATCAAAGT 60.203 41.667 10.77 4.53 44.98 2.66
2426 2745 4.036144 TGCAAAGTTTGAACATCGACATGA 59.964 37.500 19.82 0.00 33.72 3.07
2438 2757 2.886523 CAGGACTGGATGCAAAGTTTGA 59.113 45.455 19.82 5.11 0.00 2.69
2456 2775 1.631405 TTCCAGGACATTTTGGCAGG 58.369 50.000 0.00 0.00 34.38 4.85
2503 2822 7.896811 TGAAACAATCGGCATATCTATCTAGT 58.103 34.615 0.00 0.00 0.00 2.57
2504 2823 8.651588 GTTGAAACAATCGGCATATCTATCTAG 58.348 37.037 0.00 0.00 0.00 2.43
2505 2824 8.367911 AGTTGAAACAATCGGCATATCTATCTA 58.632 33.333 0.00 0.00 0.00 1.98
2506 2825 7.220030 AGTTGAAACAATCGGCATATCTATCT 58.780 34.615 0.00 0.00 0.00 1.98
2507 2826 7.386299 AGAGTTGAAACAATCGGCATATCTATC 59.614 37.037 0.00 0.00 0.00 2.08
2508 2827 7.220030 AGAGTTGAAACAATCGGCATATCTAT 58.780 34.615 0.00 0.00 0.00 1.98
2518 2837 6.574832 CACATGTACAAGAGTTGAAACAATCG 59.425 38.462 4.87 0.00 35.16 3.34
2538 2857 6.381801 GTTGTTTCTCCTAATTGGTCACATG 58.618 40.000 0.00 0.00 37.07 3.21
2587 2906 4.639334 TGCTTCAATTGGCTATGCAAAAA 58.361 34.783 5.42 0.00 0.00 1.94
2588 2907 4.268797 TGCTTCAATTGGCTATGCAAAA 57.731 36.364 5.42 0.00 0.00 2.44
2589 2908 3.957591 TGCTTCAATTGGCTATGCAAA 57.042 38.095 5.42 0.00 0.00 3.68
2593 2912 5.232463 ACAAACTTGCTTCAATTGGCTATG 58.768 37.500 5.42 0.00 0.00 2.23
2594 2913 5.473066 ACAAACTTGCTTCAATTGGCTAT 57.527 34.783 5.42 0.00 0.00 2.97
2604 2923 3.062504 CACTTGCCAAACAAACTTGCTTC 59.937 43.478 0.00 0.00 37.96 3.86
2807 3251 9.092876 CCTAGATGAAGACATAGAAAAGAACAC 57.907 37.037 0.00 0.00 36.82 3.32
2823 3267 7.256012 GGTCCTTATAACCAGTCCTAGATGAAG 60.256 44.444 0.00 0.00 36.75 3.02
3075 3519 4.383649 CGACGGTTTTAGATTTTCACGAGA 59.616 41.667 0.00 0.00 0.00 4.04
3308 3756 5.337169 GGGCAATACAGGCAATGACTAAAAA 60.337 40.000 0.00 0.00 35.46 1.94
3584 4067 8.656849 CACAAAGTTCAGTCCACATAATACTAC 58.343 37.037 0.00 0.00 0.00 2.73
3761 4994 4.409718 TCAGCTACAAGTAAACCACACA 57.590 40.909 0.00 0.00 0.00 3.72
3897 5130 9.642312 GTAATAAACGCATTTTAGTAACCTAGC 57.358 33.333 0.00 0.00 33.24 3.42
3936 5169 1.282157 ACAGGCCAAGTAGGTTCCATC 59.718 52.381 5.01 0.00 40.61 3.51
3951 5184 2.861147 AAGTTTAGGACTCCACAGGC 57.139 50.000 0.00 0.00 37.72 4.85
4278 5516 0.105039 GCTCGGCACATAAGCTAGGT 59.895 55.000 0.00 0.00 33.23 3.08
4399 5638 1.279271 CAGGTAAACTACAGGGCAGCT 59.721 52.381 0.00 0.00 0.00 4.24
4456 5695 4.526262 AGAGACGGATATTCCAATCTGAGG 59.474 45.833 2.84 0.00 35.91 3.86
4496 5735 4.619973 AGGTTCGACAACGTATGTTTACA 58.380 39.130 0.00 0.00 44.12 2.41
4534 5773 9.733556 AAACCAATCAGATGTACAATACTTGTA 57.266 29.630 0.00 0.00 43.27 2.41
4832 6082 7.874016 ACCACAAACGATCACTTGTTAGTATAA 59.126 33.333 6.67 0.00 33.51 0.98
4839 6089 3.275143 TGACCACAAACGATCACTTGTT 58.725 40.909 6.67 0.00 33.51 2.83
4862 6116 4.399934 TGTGCACAACGATACATACTAGGA 59.600 41.667 19.28 0.00 0.00 2.94
4910 6164 8.795842 TTAAGTGGTCAAGAGAAAGTTAACAA 57.204 30.769 8.61 0.00 0.00 2.83
4942 6197 5.585047 GGCTCCGTTGACAAACTTCTATAAT 59.415 40.000 0.00 0.00 33.87 1.28
4945 6200 3.335579 GGCTCCGTTGACAAACTTCTAT 58.664 45.455 0.00 0.00 33.87 1.98
4946 6201 2.762745 GGCTCCGTTGACAAACTTCTA 58.237 47.619 0.00 0.00 33.87 2.10
5082 6338 5.872617 ACGATCAATGTGGAATTTCTCGTAA 59.127 36.000 4.80 0.00 35.33 3.18
5123 6379 3.270877 AGGATAAGCGGTTTGTCATGTC 58.729 45.455 4.64 0.00 0.00 3.06
5317 6945 0.968405 TGAGAAACCTTGGGCAATGC 59.032 50.000 0.00 0.00 0.00 3.56
5338 6966 8.318412 TCATTATACAGTTGACTTTGAAGGCTA 58.682 33.333 0.00 0.00 34.24 3.93


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.