Multiple sequence alignment - TraesCS6D01G005500
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS6D01G005500 | chr6D | 100.000 | 4150 | 0 | 0 | 1 | 4150 | 2357358 | 2353209 | 0.000000e+00 | 7664.0 |
1 | TraesCS6D01G005500 | chr6D | 84.500 | 1671 | 214 | 20 | 948 | 2586 | 2336673 | 2335016 | 0.000000e+00 | 1609.0 |
2 | TraesCS6D01G005500 | chr6D | 90.789 | 152 | 14 | 0 | 2875 | 3026 | 2334760 | 2334609 | 1.960000e-48 | 204.0 |
3 | TraesCS6D01G005500 | chr6B | 95.740 | 2629 | 87 | 11 | 830 | 3450 | 3623427 | 3626038 | 0.000000e+00 | 4211.0 |
4 | TraesCS6D01G005500 | chr6B | 87.176 | 772 | 98 | 1 | 960 | 1730 | 3643742 | 3644513 | 0.000000e+00 | 876.0 |
5 | TraesCS6D01G005500 | chr6B | 80.565 | 921 | 152 | 18 | 1536 | 2432 | 22905 | 21988 | 0.000000e+00 | 684.0 |
6 | TraesCS6D01G005500 | chr6B | 87.456 | 574 | 54 | 9 | 3506 | 4072 | 3626056 | 3626618 | 0.000000e+00 | 645.0 |
7 | TraesCS6D01G005500 | chr6B | 91.473 | 129 | 10 | 1 | 2871 | 2999 | 20853 | 20726 | 4.260000e-40 | 176.0 |
8 | TraesCS6D01G005500 | chr6B | 76.970 | 330 | 60 | 13 | 37 | 361 | 3642809 | 3643127 | 1.530000e-39 | 174.0 |
9 | TraesCS6D01G005500 | chr6B | 84.906 | 159 | 21 | 3 | 2430 | 2585 | 21389 | 21231 | 1.540000e-34 | 158.0 |
10 | TraesCS6D01G005500 | chr6B | 97.872 | 47 | 1 | 0 | 3415 | 3461 | 68514946 | 68514992 | 9.560000e-12 | 82.4 |
11 | TraesCS6D01G005500 | chr6B | 97.826 | 46 | 1 | 0 | 3410 | 3455 | 22555686 | 22555641 | 3.440000e-11 | 80.5 |
12 | TraesCS6D01G005500 | chr6A | 93.451 | 1649 | 74 | 18 | 1 | 1630 | 1420411 | 1418778 | 0.000000e+00 | 2416.0 |
13 | TraesCS6D01G005500 | chr6A | 86.005 | 1915 | 237 | 16 | 994 | 2907 | 1397840 | 1395956 | 0.000000e+00 | 2023.0 |
14 | TraesCS6D01G005500 | chr6A | 80.849 | 872 | 146 | 16 | 1751 | 2616 | 1418579 | 1417723 | 0.000000e+00 | 665.0 |
15 | TraesCS6D01G005500 | chr6A | 79.819 | 332 | 51 | 12 | 37 | 361 | 1398604 | 1398282 | 1.160000e-55 | 228.0 |
16 | TraesCS6D01G005500 | chr6A | 90.625 | 160 | 15 | 0 | 2870 | 3029 | 1417496 | 1417337 | 3.250000e-51 | 213.0 |
17 | TraesCS6D01G005500 | chr6A | 90.323 | 93 | 9 | 0 | 2934 | 3026 | 1395958 | 1395866 | 5.630000e-24 | 122.0 |
18 | TraesCS6D01G005500 | chr5B | 76.963 | 382 | 83 | 5 | 1219 | 1596 | 690362873 | 690362493 | 3.250000e-51 | 213.0 |
19 | TraesCS6D01G005500 | chr5B | 72.043 | 465 | 97 | 23 | 1783 | 2232 | 690362264 | 690361818 | 1.580000e-19 | 108.0 |
20 | TraesCS6D01G005500 | chr2D | 91.781 | 146 | 9 | 3 | 3938 | 4082 | 119281618 | 119281475 | 2.530000e-47 | 200.0 |
21 | TraesCS6D01G005500 | chr2D | 95.918 | 49 | 0 | 1 | 3415 | 3463 | 233486507 | 233486553 | 1.240000e-10 | 78.7 |
22 | TraesCS6D01G005500 | chr4B | 89.116 | 147 | 16 | 0 | 3938 | 4084 | 241347449 | 241347303 | 2.550000e-42 | 183.0 |
23 | TraesCS6D01G005500 | chr4B | 88.514 | 148 | 17 | 0 | 3940 | 4087 | 593126731 | 593126878 | 3.300000e-41 | 180.0 |
24 | TraesCS6D01G005500 | chr4B | 80.282 | 142 | 28 | 0 | 1316 | 1457 | 3627070 | 3626929 | 1.580000e-19 | 108.0 |
25 | TraesCS6D01G005500 | chr4B | 92.308 | 52 | 4 | 0 | 3402 | 3453 | 348086048 | 348086099 | 1.600000e-09 | 75.0 |
26 | TraesCS6D01G005500 | chr7D | 87.755 | 147 | 18 | 0 | 3938 | 4084 | 475875493 | 475875347 | 5.520000e-39 | 172.0 |
27 | TraesCS6D01G005500 | chr7D | 87.586 | 145 | 17 | 1 | 3938 | 4082 | 398000463 | 398000606 | 2.570000e-37 | 167.0 |
28 | TraesCS6D01G005500 | chr7A | 87.013 | 154 | 16 | 3 | 3934 | 4084 | 247640919 | 247641071 | 1.980000e-38 | 171.0 |
29 | TraesCS6D01G005500 | chr7A | 84.706 | 85 | 13 | 0 | 1772 | 1856 | 19309138 | 19309222 | 7.390000e-13 | 86.1 |
30 | TraesCS6D01G005500 | chr5D | 89.051 | 137 | 15 | 0 | 3938 | 4074 | 366679212 | 366679348 | 1.980000e-38 | 171.0 |
31 | TraesCS6D01G005500 | chr5D | 97.727 | 44 | 1 | 0 | 3412 | 3455 | 548003510 | 548003553 | 4.450000e-10 | 76.8 |
32 | TraesCS6D01G005500 | chr1D | 85.714 | 154 | 17 | 1 | 3938 | 4091 | 285318444 | 285318592 | 1.540000e-34 | 158.0 |
33 | TraesCS6D01G005500 | chr1D | 85.135 | 74 | 11 | 0 | 2876 | 2949 | 469836327 | 469836254 | 4.450000e-10 | 76.8 |
34 | TraesCS6D01G005500 | chr2B | 88.000 | 100 | 12 | 0 | 1322 | 1421 | 799548130 | 799548031 | 7.290000e-23 | 119.0 |
35 | TraesCS6D01G005500 | chr2B | 79.592 | 98 | 16 | 4 | 2876 | 2971 | 13418655 | 13418560 | 2.680000e-07 | 67.6 |
36 | TraesCS6D01G005500 | chr1A | 83.784 | 111 | 18 | 0 | 2876 | 2986 | 563163375 | 563163265 | 5.670000e-19 | 106.0 |
37 | TraesCS6D01G005500 | chr4A | 90.323 | 62 | 6 | 0 | 1766 | 1827 | 710050966 | 710051027 | 9.560000e-12 | 82.4 |
38 | TraesCS6D01G005500 | chr4D | 97.727 | 44 | 1 | 0 | 3412 | 3455 | 34978340 | 34978383 | 4.450000e-10 | 76.8 |
39 | TraesCS6D01G005500 | chr4D | 97.727 | 44 | 1 | 0 | 3412 | 3455 | 317189868 | 317189911 | 4.450000e-10 | 76.8 |
40 | TraesCS6D01G005500 | chr3B | 94.000 | 50 | 3 | 0 | 3403 | 3452 | 729205876 | 729205925 | 4.450000e-10 | 76.8 |
41 | TraesCS6D01G005500 | chr1B | 84.507 | 71 | 11 | 0 | 1784 | 1854 | 651952748 | 651952678 | 2.070000e-08 | 71.3 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS6D01G005500 | chr6D | 2353209 | 2357358 | 4149 | True | 7664.000000 | 7664 | 100.000000 | 1 | 4150 | 1 | chr6D.!!$R1 | 4149 |
1 | TraesCS6D01G005500 | chr6D | 2334609 | 2336673 | 2064 | True | 906.500000 | 1609 | 87.644500 | 948 | 3026 | 2 | chr6D.!!$R2 | 2078 |
2 | TraesCS6D01G005500 | chr6B | 3623427 | 3626618 | 3191 | False | 2428.000000 | 4211 | 91.598000 | 830 | 4072 | 2 | chr6B.!!$F2 | 3242 |
3 | TraesCS6D01G005500 | chr6B | 3642809 | 3644513 | 1704 | False | 525.000000 | 876 | 82.073000 | 37 | 1730 | 2 | chr6B.!!$F3 | 1693 |
4 | TraesCS6D01G005500 | chr6B | 20726 | 22905 | 2179 | True | 339.333333 | 684 | 85.648000 | 1536 | 2999 | 3 | chr6B.!!$R2 | 1463 |
5 | TraesCS6D01G005500 | chr6A | 1417337 | 1420411 | 3074 | True | 1098.000000 | 2416 | 88.308333 | 1 | 3029 | 3 | chr6A.!!$R2 | 3028 |
6 | TraesCS6D01G005500 | chr6A | 1395866 | 1398604 | 2738 | True | 791.000000 | 2023 | 85.382333 | 37 | 3026 | 3 | chr6A.!!$R1 | 2989 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
178 | 187 | 0.032815 | AATTCAAAAACCCGCCGTGG | 59.967 | 50.000 | 0.0 | 0.0 | 37.55 | 4.94 | F |
741 | 825 | 0.038166 | TCGCATTTCCAAGGGCTTCT | 59.962 | 50.000 | 0.0 | 0.0 | 0.00 | 2.85 | F |
1424 | 1677 | 2.746277 | CCACGCCACCTGCTAACC | 60.746 | 66.667 | 0.0 | 0.0 | 38.05 | 2.85 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
1424 | 1677 | 0.383949 | CAACGGTTTGGACACCAAGG | 59.616 | 55.000 | 3.49 | 1.29 | 44.84 | 3.61 | R |
1839 | 2192 | 3.369052 | CGGAGAAAGTAGCCATACCAACA | 60.369 | 47.826 | 0.00 | 0.00 | 31.78 | 3.33 | R |
3259 | 4433 | 0.108186 | ATGAAAGTGATCGCGCCTCA | 60.108 | 50.000 | 0.00 | 3.83 | 0.00 | 3.86 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
60 | 61 | 6.476380 | TCACAGTTCATTTTGTGCAGAATTTC | 59.524 | 34.615 | 0.00 | 0.00 | 43.31 | 2.17 |
89 | 90 | 2.161012 | CACACTGAGATGACATGTTGCC | 59.839 | 50.000 | 0.00 | 0.00 | 0.00 | 4.52 |
174 | 183 | 1.337728 | CCCAGAATTCAAAAACCCGCC | 60.338 | 52.381 | 8.44 | 0.00 | 0.00 | 6.13 |
176 | 185 | 1.000717 | CAGAATTCAAAAACCCGCCGT | 60.001 | 47.619 | 8.44 | 0.00 | 0.00 | 5.68 |
178 | 187 | 0.032815 | AATTCAAAAACCCGCCGTGG | 59.967 | 50.000 | 0.00 | 0.00 | 37.55 | 4.94 |
272 | 291 | 0.684805 | AGATTTCCGGCCTCGTCTCT | 60.685 | 55.000 | 0.00 | 0.00 | 33.95 | 3.10 |
284 | 303 | 2.342179 | CTCGTCTCTGCTTTTTCCTCC | 58.658 | 52.381 | 0.00 | 0.00 | 0.00 | 4.30 |
390 | 409 | 3.107601 | TCCTCTTTCCGATCACTCCATT | 58.892 | 45.455 | 0.00 | 0.00 | 0.00 | 3.16 |
393 | 412 | 4.507710 | CTCTTTCCGATCACTCCATTGAA | 58.492 | 43.478 | 0.00 | 0.00 | 0.00 | 2.69 |
397 | 416 | 2.168521 | TCCGATCACTCCATTGAACTCC | 59.831 | 50.000 | 0.00 | 0.00 | 0.00 | 3.85 |
450 | 469 | 1.177401 | GCCATGGACAACCCTTCTTC | 58.823 | 55.000 | 18.40 | 0.00 | 35.38 | 2.87 |
458 | 477 | 0.605589 | CAACCCTTCTTCGACCACCC | 60.606 | 60.000 | 0.00 | 0.00 | 0.00 | 4.61 |
526 | 545 | 1.138266 | GCCCGTAATCAGGTCTAGCAA | 59.862 | 52.381 | 0.00 | 0.00 | 0.00 | 3.91 |
650 | 709 | 5.008613 | TCAACAAGAAAATGTGGTGTCTAGC | 59.991 | 40.000 | 0.00 | 0.00 | 33.98 | 3.42 |
651 | 710 | 4.718961 | ACAAGAAAATGTGGTGTCTAGCT | 58.281 | 39.130 | 0.00 | 0.00 | 30.82 | 3.32 |
652 | 711 | 5.865085 | ACAAGAAAATGTGGTGTCTAGCTA | 58.135 | 37.500 | 0.00 | 0.00 | 30.82 | 3.32 |
655 | 714 | 8.267894 | ACAAGAAAATGTGGTGTCTAGCTATAT | 58.732 | 33.333 | 0.00 | 0.00 | 30.82 | 0.86 |
741 | 825 | 0.038166 | TCGCATTTCCAAGGGCTTCT | 59.962 | 50.000 | 0.00 | 0.00 | 0.00 | 2.85 |
860 | 944 | 4.742659 | CGGTTGAATCGTTTTGTTTTGGAT | 59.257 | 37.500 | 0.00 | 0.00 | 0.00 | 3.41 |
1024 | 1276 | 5.234466 | AGATAATCCATGGAGGTAGCAAC | 57.766 | 43.478 | 21.33 | 6.09 | 39.02 | 4.17 |
1424 | 1677 | 2.746277 | CCACGCCACCTGCTAACC | 60.746 | 66.667 | 0.00 | 0.00 | 38.05 | 2.85 |
1457 | 1710 | 4.561735 | AACCGTTGGAGTTTGTTATGTG | 57.438 | 40.909 | 0.00 | 0.00 | 0.00 | 3.21 |
1482 | 1735 | 8.154203 | TGATGTATAAACATATGACCCACGAAT | 58.846 | 33.333 | 10.38 | 0.00 | 46.49 | 3.34 |
1839 | 2192 | 1.679944 | CCAAGGCAACGATGATCCACT | 60.680 | 52.381 | 0.00 | 0.00 | 46.39 | 4.00 |
2033 | 2389 | 3.569277 | TGTCAACCTGGACATGTGATTTG | 59.431 | 43.478 | 1.15 | 0.00 | 42.56 | 2.32 |
2154 | 2528 | 5.099575 | CCGTTGGGCAGTATAATTTGTTTC | 58.900 | 41.667 | 0.00 | 0.00 | 0.00 | 2.78 |
2300 | 2674 | 3.559655 | TGTTGTATGAAGCGATATGGTGC | 59.440 | 43.478 | 0.00 | 0.00 | 0.00 | 5.01 |
2306 | 2680 | 2.035321 | TGAAGCGATATGGTGCACGATA | 59.965 | 45.455 | 21.72 | 21.72 | 0.00 | 2.92 |
3033 | 4207 | 2.184579 | GTCGGTGACCTGCTAGCC | 59.815 | 66.667 | 13.29 | 0.00 | 0.00 | 3.93 |
3034 | 4208 | 3.449227 | TCGGTGACCTGCTAGCCG | 61.449 | 66.667 | 13.29 | 5.57 | 43.32 | 5.52 |
3049 | 4223 | 2.674796 | AGCCGATCACAAGTCCTAAC | 57.325 | 50.000 | 0.00 | 0.00 | 0.00 | 2.34 |
3055 | 4229 | 3.063997 | CGATCACAAGTCCTAACATTGCC | 59.936 | 47.826 | 0.00 | 0.00 | 0.00 | 4.52 |
3071 | 4245 | 1.376553 | GCCAGGTTGAGCAGTCCTC | 60.377 | 63.158 | 0.00 | 0.00 | 41.15 | 3.71 |
3072 | 4246 | 1.298014 | CCAGGTTGAGCAGTCCTCC | 59.702 | 63.158 | 0.00 | 0.00 | 39.98 | 4.30 |
3073 | 4247 | 1.197430 | CCAGGTTGAGCAGTCCTCCT | 61.197 | 60.000 | 0.00 | 0.00 | 39.98 | 3.69 |
3074 | 4248 | 0.248843 | CAGGTTGAGCAGTCCTCCTC | 59.751 | 60.000 | 0.00 | 0.00 | 39.98 | 3.71 |
3088 | 4262 | 2.317900 | TCCTCCTCCTCCTCCATGTAAA | 59.682 | 50.000 | 0.00 | 0.00 | 0.00 | 2.01 |
3092 | 4266 | 4.033709 | TCCTCCTCCTCCATGTAAAGAAG | 58.966 | 47.826 | 0.00 | 0.00 | 0.00 | 2.85 |
3116 | 4290 | 7.649057 | AGACCACTTTATTCAAGTTTGTAAGC | 58.351 | 34.615 | 0.00 | 0.00 | 43.89 | 3.09 |
3148 | 4322 | 1.968017 | ACGCATGCTGTTGGTCCAG | 60.968 | 57.895 | 17.13 | 0.00 | 35.49 | 3.86 |
3157 | 4331 | 2.673368 | GCTGTTGGTCCAGAGTAAATCG | 59.327 | 50.000 | 0.00 | 0.00 | 34.23 | 3.34 |
3176 | 4350 | 1.602377 | CGAAGCTCGACCAACCTTTTT | 59.398 | 47.619 | 0.00 | 0.00 | 43.74 | 1.94 |
3246 | 4420 | 7.483307 | ACAAATTGAGTAAATTCCATCCATCG | 58.517 | 34.615 | 0.00 | 0.00 | 37.51 | 3.84 |
3255 | 4429 | 3.643199 | TTCCATCCATCGGACATCAAA | 57.357 | 42.857 | 0.00 | 0.00 | 32.98 | 2.69 |
3257 | 4431 | 4.169059 | TCCATCCATCGGACATCAAATT | 57.831 | 40.909 | 0.00 | 0.00 | 32.98 | 1.82 |
3259 | 4433 | 3.633525 | CCATCCATCGGACATCAAATTGT | 59.366 | 43.478 | 0.00 | 0.00 | 32.98 | 2.71 |
3306 | 4484 | 5.524281 | TGACGTTGTAAAGTGAATACAAGCA | 59.476 | 36.000 | 0.00 | 0.00 | 42.24 | 3.91 |
3326 | 4504 | 2.095768 | CAGACACCAATAACTGCAACCG | 60.096 | 50.000 | 0.00 | 0.00 | 0.00 | 4.44 |
3374 | 4552 | 1.168714 | CCAAGGTAGCCTCAAACTGC | 58.831 | 55.000 | 0.00 | 0.00 | 30.89 | 4.40 |
3379 | 4557 | 1.375908 | TAGCCTCAAACTGCTGCCG | 60.376 | 57.895 | 0.00 | 0.00 | 38.52 | 5.69 |
3413 | 4591 | 2.627221 | AGGACATCGATGATCAGAGGTG | 59.373 | 50.000 | 31.33 | 9.00 | 31.14 | 4.00 |
3436 | 4614 | 4.141914 | GCTCCCTCCGTCCCATAATATAAG | 60.142 | 50.000 | 0.00 | 0.00 | 0.00 | 1.73 |
3437 | 4615 | 5.269991 | CTCCCTCCGTCCCATAATATAAGA | 58.730 | 45.833 | 0.00 | 0.00 | 0.00 | 2.10 |
3440 | 4618 | 5.408356 | CCTCCGTCCCATAATATAAGAACG | 58.592 | 45.833 | 0.00 | 0.00 | 0.00 | 3.95 |
3450 | 4628 | 9.233232 | CCCATAATATAAGAACGTTTTTCAAGC | 57.767 | 33.333 | 7.42 | 0.00 | 0.00 | 4.01 |
3457 | 4635 | 5.613358 | AGAACGTTTTTCAAGCTATGAGG | 57.387 | 39.130 | 0.46 | 0.00 | 39.77 | 3.86 |
3458 | 4636 | 4.455877 | AGAACGTTTTTCAAGCTATGAGGG | 59.544 | 41.667 | 0.46 | 0.00 | 39.77 | 4.30 |
3459 | 4637 | 4.015872 | ACGTTTTTCAAGCTATGAGGGA | 57.984 | 40.909 | 0.00 | 0.00 | 39.77 | 4.20 |
3460 | 4638 | 4.003648 | ACGTTTTTCAAGCTATGAGGGAG | 58.996 | 43.478 | 0.00 | 0.00 | 39.77 | 4.30 |
3461 | 4639 | 4.003648 | CGTTTTTCAAGCTATGAGGGAGT | 58.996 | 43.478 | 0.00 | 0.00 | 39.77 | 3.85 |
3466 | 4644 | 6.412362 | TTTCAAGCTATGAGGGAGTATCTC | 57.588 | 41.667 | 0.00 | 0.00 | 39.77 | 2.75 |
3479 | 4657 | 4.521256 | GGGAGTATCTCTGTATCACCTCAC | 59.479 | 50.000 | 0.00 | 0.00 | 33.73 | 3.51 |
3480 | 4658 | 5.133941 | GGAGTATCTCTGTATCACCTCACA | 58.866 | 45.833 | 0.00 | 0.00 | 33.73 | 3.58 |
3481 | 4659 | 5.240623 | GGAGTATCTCTGTATCACCTCACAG | 59.759 | 48.000 | 0.00 | 0.00 | 42.88 | 3.66 |
3482 | 4660 | 5.136828 | AGTATCTCTGTATCACCTCACAGG | 58.863 | 45.833 | 2.20 | 0.00 | 42.01 | 4.00 |
3483 | 4661 | 2.739943 | TCTCTGTATCACCTCACAGGG | 58.260 | 52.381 | 2.20 | 0.00 | 43.38 | 4.45 |
3484 | 4662 | 1.759445 | CTCTGTATCACCTCACAGGGG | 59.241 | 57.143 | 2.20 | 0.00 | 41.27 | 4.79 |
3485 | 4663 | 0.179000 | CTGTATCACCTCACAGGGGC | 59.821 | 60.000 | 0.00 | 0.00 | 39.16 | 5.80 |
3486 | 4664 | 0.252696 | TGTATCACCTCACAGGGGCT | 60.253 | 55.000 | 0.00 | 0.00 | 39.16 | 5.19 |
3487 | 4665 | 0.466124 | GTATCACCTCACAGGGGCTC | 59.534 | 60.000 | 0.00 | 0.00 | 39.16 | 4.70 |
3488 | 4666 | 0.042581 | TATCACCTCACAGGGGCTCA | 59.957 | 55.000 | 0.00 | 0.00 | 39.16 | 4.26 |
3489 | 4667 | 1.270414 | ATCACCTCACAGGGGCTCAG | 61.270 | 60.000 | 0.00 | 0.00 | 39.16 | 3.35 |
3490 | 4668 | 1.915266 | CACCTCACAGGGGCTCAGA | 60.915 | 63.158 | 0.00 | 0.00 | 40.58 | 3.27 |
3491 | 4669 | 1.081833 | ACCTCACAGGGGCTCAGAT | 59.918 | 57.895 | 0.00 | 0.00 | 40.58 | 2.90 |
3492 | 4670 | 0.980231 | ACCTCACAGGGGCTCAGATC | 60.980 | 60.000 | 0.00 | 0.00 | 40.58 | 2.75 |
3493 | 4671 | 0.690411 | CCTCACAGGGGCTCAGATCT | 60.690 | 60.000 | 0.00 | 0.00 | 0.00 | 2.75 |
3494 | 4672 | 1.202330 | CTCACAGGGGCTCAGATCTT | 58.798 | 55.000 | 0.00 | 0.00 | 0.00 | 2.40 |
3495 | 4673 | 0.907486 | TCACAGGGGCTCAGATCTTG | 59.093 | 55.000 | 0.00 | 0.00 | 0.00 | 3.02 |
3496 | 4674 | 0.617413 | CACAGGGGCTCAGATCTTGT | 59.383 | 55.000 | 0.00 | 0.00 | 0.00 | 3.16 |
3497 | 4675 | 0.908198 | ACAGGGGCTCAGATCTTGTC | 59.092 | 55.000 | 0.00 | 0.00 | 0.00 | 3.18 |
3498 | 4676 | 0.907486 | CAGGGGCTCAGATCTTGTCA | 59.093 | 55.000 | 0.00 | 0.00 | 0.00 | 3.58 |
3499 | 4677 | 1.134461 | CAGGGGCTCAGATCTTGTCAG | 60.134 | 57.143 | 0.00 | 0.00 | 0.00 | 3.51 |
3500 | 4678 | 0.179936 | GGGGCTCAGATCTTGTCAGG | 59.820 | 60.000 | 0.00 | 0.00 | 0.00 | 3.86 |
3501 | 4679 | 0.463474 | GGGCTCAGATCTTGTCAGGC | 60.463 | 60.000 | 0.00 | 0.00 | 0.00 | 4.85 |
3502 | 4680 | 0.251354 | GGCTCAGATCTTGTCAGGCA | 59.749 | 55.000 | 0.00 | 0.00 | 0.00 | 4.75 |
3503 | 4681 | 1.339438 | GGCTCAGATCTTGTCAGGCAA | 60.339 | 52.381 | 0.00 | 0.00 | 35.50 | 4.52 |
3504 | 4682 | 2.430465 | GCTCAGATCTTGTCAGGCAAA | 58.570 | 47.619 | 0.00 | 0.00 | 36.53 | 3.68 |
3505 | 4683 | 2.816087 | GCTCAGATCTTGTCAGGCAAAA | 59.184 | 45.455 | 0.00 | 0.00 | 36.53 | 2.44 |
3536 | 4714 | 1.180029 | ACTGAGTTTCCCATGCATGC | 58.820 | 50.000 | 21.69 | 11.82 | 0.00 | 4.06 |
3566 | 4744 | 3.064931 | CGAGTCCAAGTAGTTTTCACCC | 58.935 | 50.000 | 0.00 | 0.00 | 0.00 | 4.61 |
3567 | 4745 | 3.409570 | GAGTCCAAGTAGTTTTCACCCC | 58.590 | 50.000 | 0.00 | 0.00 | 0.00 | 4.95 |
3573 | 4751 | 4.202212 | CCAAGTAGTTTTCACCCCTTTTGG | 60.202 | 45.833 | 0.00 | 0.00 | 39.97 | 3.28 |
3607 | 4785 | 1.164411 | TTTCTGCCGTGCACAATAGG | 58.836 | 50.000 | 18.64 | 10.94 | 33.79 | 2.57 |
3614 | 4796 | 3.773860 | CCGTGCACAATAGGCAATTAA | 57.226 | 42.857 | 18.64 | 0.00 | 43.91 | 1.40 |
3617 | 4799 | 3.128589 | CGTGCACAATAGGCAATTAAGGT | 59.871 | 43.478 | 18.64 | 0.00 | 43.91 | 3.50 |
3622 | 4804 | 3.954258 | ACAATAGGCAATTAAGGTGAGGC | 59.046 | 43.478 | 0.00 | 0.00 | 0.00 | 4.70 |
3680 | 4862 | 4.709840 | GCAGCTGCAGGAGAAAGA | 57.290 | 55.556 | 33.36 | 0.00 | 41.59 | 2.52 |
3686 | 4868 | 2.028203 | AGCTGCAGGAGAAAGAGAAGAC | 60.028 | 50.000 | 17.12 | 0.00 | 0.00 | 3.01 |
3744 | 4926 | 4.946478 | AGGCTAGCTGGTAAGAGTATTG | 57.054 | 45.455 | 15.72 | 0.00 | 0.00 | 1.90 |
3783 | 4965 | 5.103290 | TCGTGCTTTATTCCACAACTTTC | 57.897 | 39.130 | 0.00 | 0.00 | 32.37 | 2.62 |
3784 | 4966 | 4.023536 | TCGTGCTTTATTCCACAACTTTCC | 60.024 | 41.667 | 0.00 | 0.00 | 32.37 | 3.13 |
3786 | 4968 | 5.507315 | CGTGCTTTATTCCACAACTTTCCTT | 60.507 | 40.000 | 0.00 | 0.00 | 32.37 | 3.36 |
3789 | 4971 | 6.097554 | TGCTTTATTCCACAACTTTCCTTTGA | 59.902 | 34.615 | 0.00 | 0.00 | 0.00 | 2.69 |
3795 | 4977 | 3.304659 | CCACAACTTTCCTTTGATGTCCG | 60.305 | 47.826 | 0.00 | 0.00 | 0.00 | 4.79 |
3808 | 4990 | 1.474478 | GATGTCCGAGTCTCAAGAGCA | 59.526 | 52.381 | 0.00 | 0.00 | 0.00 | 4.26 |
3826 | 5008 | 1.003116 | GCATGAGCCACACGATCATTC | 60.003 | 52.381 | 0.00 | 0.00 | 31.38 | 2.67 |
3830 | 5012 | 0.179100 | AGCCACACGATCATTCTCCG | 60.179 | 55.000 | 0.00 | 0.00 | 0.00 | 4.63 |
3834 | 5016 | 0.532573 | ACACGATCATTCTCCGCAGT | 59.467 | 50.000 | 0.00 | 0.00 | 0.00 | 4.40 |
3850 | 5032 | 5.132502 | TCCGCAGTATGAATGGATCATTTT | 58.867 | 37.500 | 0.00 | 0.00 | 46.85 | 1.82 |
3861 | 5043 | 9.523168 | ATGAATGGATCATTTTCCACAATTTTT | 57.477 | 25.926 | 0.00 | 0.00 | 46.85 | 1.94 |
3864 | 5046 | 6.520272 | TGGATCATTTTCCACAATTTTTCGT | 58.480 | 32.000 | 0.00 | 0.00 | 40.90 | 3.85 |
3865 | 5047 | 7.661968 | TGGATCATTTTCCACAATTTTTCGTA | 58.338 | 30.769 | 0.00 | 0.00 | 40.90 | 3.43 |
3866 | 5048 | 7.596995 | TGGATCATTTTCCACAATTTTTCGTAC | 59.403 | 33.333 | 0.00 | 0.00 | 40.90 | 3.67 |
3867 | 5049 | 7.062956 | GGATCATTTTCCACAATTTTTCGTACC | 59.937 | 37.037 | 0.00 | 0.00 | 35.72 | 3.34 |
3868 | 5050 | 5.915758 | TCATTTTCCACAATTTTTCGTACCG | 59.084 | 36.000 | 0.00 | 0.00 | 0.00 | 4.02 |
3872 | 5054 | 3.002451 | TCCACAATTTTTCGTACCGTGTG | 59.998 | 43.478 | 0.00 | 0.00 | 35.72 | 3.82 |
3881 | 5063 | 1.014044 | CGTACCGTGTGCTTGCTCAT | 61.014 | 55.000 | 0.73 | 0.00 | 0.00 | 2.90 |
3887 | 5069 | 2.270257 | TGTGCTTGCTCATGGTGGC | 61.270 | 57.895 | 0.00 | 0.00 | 0.00 | 5.01 |
3908 | 5090 | 4.329545 | GGTGGTCTTCAGCGGGCA | 62.330 | 66.667 | 0.00 | 0.00 | 33.95 | 5.36 |
3926 | 5110 | 0.960364 | CACGGTGCCTGGTTGCTAAT | 60.960 | 55.000 | 0.00 | 0.00 | 0.00 | 1.73 |
3935 | 5119 | 3.382546 | GCCTGGTTGCTAATGTGATCATT | 59.617 | 43.478 | 0.00 | 0.00 | 45.00 | 2.57 |
3961 | 5145 | 8.103935 | TGGTAACATCACATATACCAAGACAAA | 58.896 | 33.333 | 1.21 | 0.00 | 46.17 | 2.83 |
3966 | 5150 | 8.896744 | ACATCACATATACCAAGACAAAATGAG | 58.103 | 33.333 | 0.00 | 0.00 | 0.00 | 2.90 |
3968 | 5152 | 8.492673 | TCACATATACCAAGACAAAATGAGTC | 57.507 | 34.615 | 0.00 | 0.00 | 36.26 | 3.36 |
3972 | 5156 | 8.755941 | CATATACCAAGACAAAATGAGTCTACG | 58.244 | 37.037 | 0.00 | 0.00 | 45.11 | 3.51 |
3975 | 5159 | 5.221461 | ACCAAGACAAAATGAGTCTACGACT | 60.221 | 40.000 | 0.00 | 0.00 | 45.11 | 4.18 |
4018 | 5202 | 7.307989 | GCATAACATCACACATATGTTACTCCC | 60.308 | 40.741 | 5.37 | 0.00 | 46.84 | 4.30 |
4021 | 5205 | 4.481368 | TCACACATATGTTACTCCCCAC | 57.519 | 45.455 | 5.37 | 0.00 | 36.72 | 4.61 |
4026 | 5210 | 7.232737 | TCACACATATGTTACTCCCCACTATAG | 59.767 | 40.741 | 5.37 | 0.00 | 36.72 | 1.31 |
4028 | 5212 | 7.451877 | ACACATATGTTACTCCCCACTATAGAG | 59.548 | 40.741 | 5.37 | 0.00 | 34.46 | 2.43 |
4067 | 5251 | 7.279536 | GCATGTTACTAGTTTAAGTTACTCCCC | 59.720 | 40.741 | 0.00 | 0.00 | 31.82 | 4.81 |
4068 | 5252 | 7.854166 | TGTTACTAGTTTAAGTTACTCCCCA | 57.146 | 36.000 | 0.00 | 0.00 | 31.82 | 4.96 |
4069 | 5253 | 7.670364 | TGTTACTAGTTTAAGTTACTCCCCAC | 58.330 | 38.462 | 0.00 | 0.00 | 31.82 | 4.61 |
4070 | 5254 | 7.510343 | TGTTACTAGTTTAAGTTACTCCCCACT | 59.490 | 37.037 | 0.00 | 0.00 | 31.82 | 4.00 |
4071 | 5255 | 9.025041 | GTTACTAGTTTAAGTTACTCCCCACTA | 57.975 | 37.037 | 0.00 | 0.00 | 0.00 | 2.74 |
4072 | 5256 | 9.774071 | TTACTAGTTTAAGTTACTCCCCACTAT | 57.226 | 33.333 | 0.00 | 0.00 | 0.00 | 2.12 |
4073 | 5257 | 8.075761 | ACTAGTTTAAGTTACTCCCCACTATG | 57.924 | 38.462 | 0.00 | 0.00 | 0.00 | 2.23 |
4074 | 5258 | 6.309389 | AGTTTAAGTTACTCCCCACTATGG | 57.691 | 41.667 | 0.00 | 0.00 | 37.25 | 2.74 |
4075 | 5259 | 6.027482 | AGTTTAAGTTACTCCCCACTATGGA | 58.973 | 40.000 | 0.00 | 0.00 | 40.96 | 3.41 |
4076 | 5260 | 6.677076 | AGTTTAAGTTACTCCCCACTATGGAT | 59.323 | 38.462 | 0.00 | 0.00 | 40.96 | 3.41 |
4077 | 5261 | 7.847848 | AGTTTAAGTTACTCCCCACTATGGATA | 59.152 | 37.037 | 0.00 | 0.00 | 40.96 | 2.59 |
4078 | 5262 | 7.850935 | TTAAGTTACTCCCCACTATGGATAG | 57.149 | 40.000 | 0.00 | 0.00 | 40.96 | 2.08 |
4079 | 5263 | 5.420215 | AGTTACTCCCCACTATGGATAGT | 57.580 | 43.478 | 0.00 | 2.28 | 44.03 | 2.12 |
4080 | 5264 | 5.395611 | AGTTACTCCCCACTATGGATAGTC | 58.604 | 45.833 | 0.00 | 0.00 | 41.44 | 2.59 |
4081 | 5265 | 5.136392 | AGTTACTCCCCACTATGGATAGTCT | 59.864 | 44.000 | 0.00 | 0.00 | 41.44 | 3.24 |
4082 | 5266 | 6.334774 | AGTTACTCCCCACTATGGATAGTCTA | 59.665 | 42.308 | 0.00 | 0.00 | 41.44 | 2.59 |
4083 | 5267 | 5.681494 | ACTCCCCACTATGGATAGTCTAA | 57.319 | 43.478 | 0.00 | 0.00 | 41.44 | 2.10 |
4084 | 5268 | 6.234404 | ACTCCCCACTATGGATAGTCTAAT | 57.766 | 41.667 | 0.00 | 0.00 | 41.44 | 1.73 |
4085 | 5269 | 6.019748 | ACTCCCCACTATGGATAGTCTAATG | 58.980 | 44.000 | 0.00 | 0.00 | 41.44 | 1.90 |
4086 | 5270 | 4.777896 | TCCCCACTATGGATAGTCTAATGC | 59.222 | 45.833 | 0.00 | 0.00 | 41.44 | 3.56 |
4087 | 5271 | 4.080863 | CCCCACTATGGATAGTCTAATGCC | 60.081 | 50.000 | 0.00 | 0.00 | 41.44 | 4.40 |
4088 | 5272 | 4.780021 | CCCACTATGGATAGTCTAATGCCT | 59.220 | 45.833 | 0.00 | 0.00 | 41.44 | 4.75 |
4089 | 5273 | 5.958380 | CCCACTATGGATAGTCTAATGCCTA | 59.042 | 44.000 | 0.00 | 0.00 | 41.44 | 3.93 |
4090 | 5274 | 6.613271 | CCCACTATGGATAGTCTAATGCCTAT | 59.387 | 42.308 | 0.00 | 0.00 | 41.44 | 2.57 |
4091 | 5275 | 7.126421 | CCCACTATGGATAGTCTAATGCCTATT | 59.874 | 40.741 | 0.00 | 0.00 | 41.44 | 1.73 |
4092 | 5276 | 7.984050 | CCACTATGGATAGTCTAATGCCTATTG | 59.016 | 40.741 | 0.00 | 0.00 | 41.44 | 1.90 |
4093 | 5277 | 8.535335 | CACTATGGATAGTCTAATGCCTATTGT | 58.465 | 37.037 | 0.00 | 0.00 | 41.44 | 2.71 |
4094 | 5278 | 9.105844 | ACTATGGATAGTCTAATGCCTATTGTT | 57.894 | 33.333 | 0.00 | 0.00 | 39.27 | 2.83 |
4095 | 5279 | 9.376075 | CTATGGATAGTCTAATGCCTATTGTTG | 57.624 | 37.037 | 0.00 | 0.00 | 0.00 | 3.33 |
4096 | 5280 | 7.136822 | TGGATAGTCTAATGCCTATTGTTGT | 57.863 | 36.000 | 0.00 | 0.00 | 0.00 | 3.32 |
4097 | 5281 | 6.992123 | TGGATAGTCTAATGCCTATTGTTGTG | 59.008 | 38.462 | 0.00 | 0.00 | 0.00 | 3.33 |
4098 | 5282 | 6.073003 | GGATAGTCTAATGCCTATTGTTGTGC | 60.073 | 42.308 | 0.00 | 0.00 | 0.00 | 4.57 |
4099 | 5283 | 4.848357 | AGTCTAATGCCTATTGTTGTGCT | 58.152 | 39.130 | 0.00 | 0.00 | 0.00 | 4.40 |
4100 | 5284 | 4.637534 | AGTCTAATGCCTATTGTTGTGCTG | 59.362 | 41.667 | 0.00 | 0.00 | 0.00 | 4.41 |
4101 | 5285 | 4.396166 | GTCTAATGCCTATTGTTGTGCTGT | 59.604 | 41.667 | 0.00 | 0.00 | 0.00 | 4.40 |
4102 | 5286 | 5.009631 | TCTAATGCCTATTGTTGTGCTGTT | 58.990 | 37.500 | 0.00 | 0.00 | 0.00 | 3.16 |
4103 | 5287 | 6.093495 | GTCTAATGCCTATTGTTGTGCTGTTA | 59.907 | 38.462 | 0.00 | 0.00 | 0.00 | 2.41 |
4104 | 5288 | 5.720371 | AATGCCTATTGTTGTGCTGTTAA | 57.280 | 34.783 | 0.00 | 0.00 | 0.00 | 2.01 |
4105 | 5289 | 5.720371 | ATGCCTATTGTTGTGCTGTTAAA | 57.280 | 34.783 | 0.00 | 0.00 | 0.00 | 1.52 |
4106 | 5290 | 5.521906 | TGCCTATTGTTGTGCTGTTAAAA | 57.478 | 34.783 | 0.00 | 0.00 | 0.00 | 1.52 |
4107 | 5291 | 5.907207 | TGCCTATTGTTGTGCTGTTAAAAA | 58.093 | 33.333 | 0.00 | 0.00 | 0.00 | 1.94 |
4108 | 5292 | 5.982516 | TGCCTATTGTTGTGCTGTTAAAAAG | 59.017 | 36.000 | 0.00 | 0.00 | 0.00 | 2.27 |
4109 | 5293 | 5.405269 | GCCTATTGTTGTGCTGTTAAAAAGG | 59.595 | 40.000 | 0.00 | 0.00 | 0.00 | 3.11 |
4110 | 5294 | 6.512297 | CCTATTGTTGTGCTGTTAAAAAGGT | 58.488 | 36.000 | 0.00 | 0.00 | 0.00 | 3.50 |
4111 | 5295 | 6.420604 | CCTATTGTTGTGCTGTTAAAAAGGTG | 59.579 | 38.462 | 0.00 | 0.00 | 0.00 | 4.00 |
4112 | 5296 | 5.392767 | TTGTTGTGCTGTTAAAAAGGTGA | 57.607 | 34.783 | 0.00 | 0.00 | 0.00 | 4.02 |
4113 | 5297 | 5.392767 | TGTTGTGCTGTTAAAAAGGTGAA | 57.607 | 34.783 | 0.00 | 0.00 | 0.00 | 3.18 |
4114 | 5298 | 5.784177 | TGTTGTGCTGTTAAAAAGGTGAAA | 58.216 | 33.333 | 0.00 | 0.00 | 0.00 | 2.69 |
4115 | 5299 | 5.866633 | TGTTGTGCTGTTAAAAAGGTGAAAG | 59.133 | 36.000 | 0.00 | 0.00 | 0.00 | 2.62 |
4116 | 5300 | 4.429108 | TGTGCTGTTAAAAAGGTGAAAGC | 58.571 | 39.130 | 0.00 | 0.00 | 0.00 | 3.51 |
4117 | 5301 | 4.081972 | TGTGCTGTTAAAAAGGTGAAAGCA | 60.082 | 37.500 | 0.00 | 0.00 | 37.10 | 3.91 |
4118 | 5302 | 4.504097 | GTGCTGTTAAAAAGGTGAAAGCAG | 59.496 | 41.667 | 0.00 | 0.00 | 39.86 | 4.24 |
4119 | 5303 | 3.490896 | GCTGTTAAAAAGGTGAAAGCAGC | 59.509 | 43.478 | 0.00 | 0.00 | 42.72 | 5.25 |
4120 | 5304 | 3.701241 | TGTTAAAAAGGTGAAAGCAGCG | 58.299 | 40.909 | 0.00 | 0.00 | 46.76 | 5.18 |
4121 | 5305 | 3.049912 | GTTAAAAAGGTGAAAGCAGCGG | 58.950 | 45.455 | 0.00 | 0.00 | 46.76 | 5.52 |
4122 | 5306 | 1.111277 | AAAAAGGTGAAAGCAGCGGT | 58.889 | 45.000 | 0.00 | 0.00 | 46.76 | 5.68 |
4123 | 5307 | 0.385390 | AAAAGGTGAAAGCAGCGGTG | 59.615 | 50.000 | 10.98 | 10.98 | 46.76 | 4.94 |
4124 | 5308 | 0.465460 | AAAGGTGAAAGCAGCGGTGA | 60.465 | 50.000 | 20.69 | 0.00 | 46.76 | 4.02 |
4125 | 5309 | 0.886490 | AAGGTGAAAGCAGCGGTGAG | 60.886 | 55.000 | 20.69 | 0.00 | 46.76 | 3.51 |
4126 | 5310 | 2.328099 | GGTGAAAGCAGCGGTGAGG | 61.328 | 63.158 | 20.69 | 0.00 | 32.24 | 3.86 |
4127 | 5311 | 2.669569 | TGAAAGCAGCGGTGAGGC | 60.670 | 61.111 | 20.69 | 2.44 | 0.00 | 4.70 |
4128 | 5312 | 2.669569 | GAAAGCAGCGGTGAGGCA | 60.670 | 61.111 | 20.69 | 0.00 | 34.64 | 4.75 |
4129 | 5313 | 2.203337 | AAAGCAGCGGTGAGGCAA | 60.203 | 55.556 | 20.69 | 0.00 | 34.64 | 4.52 |
4130 | 5314 | 2.463675 | GAAAGCAGCGGTGAGGCAAC | 62.464 | 60.000 | 20.69 | 0.00 | 34.64 | 4.17 |
4133 | 5317 | 2.594303 | CAGCGGTGAGGCAACCAA | 60.594 | 61.111 | 9.50 | 0.00 | 40.53 | 3.67 |
4134 | 5318 | 1.973281 | CAGCGGTGAGGCAACCAAT | 60.973 | 57.895 | 9.50 | 0.00 | 40.53 | 3.16 |
4135 | 5319 | 1.675641 | AGCGGTGAGGCAACCAATC | 60.676 | 57.895 | 9.68 | 0.00 | 40.53 | 2.67 |
4136 | 5320 | 3.039202 | GCGGTGAGGCAACCAATCG | 62.039 | 63.158 | 9.68 | 3.25 | 40.53 | 3.34 |
4137 | 5321 | 1.375396 | CGGTGAGGCAACCAATCGA | 60.375 | 57.895 | 9.68 | 0.00 | 40.53 | 3.59 |
4138 | 5322 | 1.635663 | CGGTGAGGCAACCAATCGAC | 61.636 | 60.000 | 9.68 | 0.00 | 40.53 | 4.20 |
4139 | 5323 | 0.605319 | GGTGAGGCAACCAATCGACA | 60.605 | 55.000 | 4.63 | 0.00 | 40.22 | 4.35 |
4140 | 5324 | 0.517316 | GTGAGGCAACCAATCGACAC | 59.483 | 55.000 | 0.00 | 0.00 | 37.17 | 3.67 |
4141 | 5325 | 0.605319 | TGAGGCAACCAATCGACACC | 60.605 | 55.000 | 0.00 | 0.00 | 37.17 | 4.16 |
4142 | 5326 | 1.303317 | AGGCAACCAATCGACACCC | 60.303 | 57.895 | 0.00 | 0.00 | 37.17 | 4.61 |
4143 | 5327 | 1.602323 | GGCAACCAATCGACACCCA | 60.602 | 57.895 | 0.00 | 0.00 | 0.00 | 4.51 |
4144 | 5328 | 0.965363 | GGCAACCAATCGACACCCAT | 60.965 | 55.000 | 0.00 | 0.00 | 0.00 | 4.00 |
4145 | 5329 | 0.451783 | GCAACCAATCGACACCCATC | 59.548 | 55.000 | 0.00 | 0.00 | 0.00 | 3.51 |
4146 | 5330 | 1.094785 | CAACCAATCGACACCCATCC | 58.905 | 55.000 | 0.00 | 0.00 | 0.00 | 3.51 |
4147 | 5331 | 0.034477 | AACCAATCGACACCCATCCC | 60.034 | 55.000 | 0.00 | 0.00 | 0.00 | 3.85 |
4148 | 5332 | 1.204786 | ACCAATCGACACCCATCCCA | 61.205 | 55.000 | 0.00 | 0.00 | 0.00 | 4.37 |
4149 | 5333 | 0.034574 | CCAATCGACACCCATCCCAA | 60.035 | 55.000 | 0.00 | 0.00 | 0.00 | 4.12 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
60 | 61 | 3.055602 | TGTCATCTCAGTGTGATTGGAGG | 60.056 | 47.826 | 4.94 | 0.00 | 0.00 | 4.30 |
213 | 232 | 0.869068 | TTGTGAACGCGGTTGGTATG | 59.131 | 50.000 | 12.47 | 0.00 | 0.00 | 2.39 |
272 | 291 | 4.583073 | GTGGTAAAGAAGGAGGAAAAAGCA | 59.417 | 41.667 | 0.00 | 0.00 | 0.00 | 3.91 |
390 | 409 | 0.323629 | CTAGGGGTTTGCGGAGTTCA | 59.676 | 55.000 | 0.00 | 0.00 | 0.00 | 3.18 |
393 | 412 | 0.616679 | TAGCTAGGGGTTTGCGGAGT | 60.617 | 55.000 | 0.00 | 0.00 | 32.48 | 3.85 |
397 | 416 | 0.392461 | TTGCTAGCTAGGGGTTTGCG | 60.392 | 55.000 | 22.10 | 0.00 | 32.48 | 4.85 |
458 | 477 | 1.958205 | GGATTCTGATGCGAGGCCG | 60.958 | 63.158 | 0.00 | 0.00 | 39.16 | 6.13 |
517 | 536 | 1.222113 | GGCCACCTCTTGCTAGACC | 59.778 | 63.158 | 0.00 | 0.00 | 0.00 | 3.85 |
563 | 622 | 9.860650 | ACTTATATAGCCACCACATTTGATAAA | 57.139 | 29.630 | 0.00 | 0.00 | 0.00 | 1.40 |
860 | 944 | 7.148356 | GCATGAAAAGCCATATCGATCTTATCA | 60.148 | 37.037 | 0.00 | 0.00 | 0.00 | 2.15 |
1114 | 1366 | 1.067212 | GTACGAGGACTTGGATCGCAT | 59.933 | 52.381 | 0.00 | 0.00 | 40.02 | 4.73 |
1424 | 1677 | 0.383949 | CAACGGTTTGGACACCAAGG | 59.616 | 55.000 | 3.49 | 1.29 | 44.84 | 3.61 |
1457 | 1710 | 7.956420 | TTCGTGGGTCATATGTTTATACATC | 57.044 | 36.000 | 1.77 | 0.00 | 43.81 | 3.06 |
1482 | 1735 | 1.603842 | CTGCTACCACCATGGCTGA | 59.396 | 57.895 | 13.04 | 0.00 | 42.67 | 4.26 |
1839 | 2192 | 3.369052 | CGGAGAAAGTAGCCATACCAACA | 60.369 | 47.826 | 0.00 | 0.00 | 31.78 | 3.33 |
2033 | 2389 | 3.954258 | CCCATCCTCCTTTATTGTCCAAC | 59.046 | 47.826 | 0.00 | 0.00 | 0.00 | 3.77 |
2306 | 2680 | 6.471146 | CCCGGAGAGATCATCATTATTCTTT | 58.529 | 40.000 | 0.73 | 0.00 | 0.00 | 2.52 |
2742 | 3750 | 2.290206 | ATGGAGTTCATTGGCGGAAGC | 61.290 | 52.381 | 0.00 | 0.00 | 45.53 | 3.86 |
2743 | 3751 | 1.755179 | ATGGAGTTCATTGGCGGAAG | 58.245 | 50.000 | 0.00 | 0.00 | 30.55 | 3.46 |
2744 | 3752 | 2.503765 | TCTATGGAGTTCATTGGCGGAA | 59.496 | 45.455 | 0.00 | 0.00 | 37.30 | 4.30 |
2745 | 3753 | 2.115427 | TCTATGGAGTTCATTGGCGGA | 58.885 | 47.619 | 0.00 | 0.00 | 37.30 | 5.54 |
2746 | 3754 | 2.620251 | TCTATGGAGTTCATTGGCGG | 57.380 | 50.000 | 0.00 | 0.00 | 37.30 | 6.13 |
3033 | 4207 | 3.063997 | GGCAATGTTAGGACTTGTGATCG | 59.936 | 47.826 | 0.00 | 0.00 | 0.00 | 3.69 |
3034 | 4208 | 4.009675 | TGGCAATGTTAGGACTTGTGATC | 58.990 | 43.478 | 0.00 | 0.00 | 0.00 | 2.92 |
3049 | 4223 | 0.524862 | GACTGCTCAACCTGGCAATG | 59.475 | 55.000 | 0.00 | 0.00 | 38.02 | 2.82 |
3055 | 4229 | 0.248843 | GAGGAGGACTGCTCAACCTG | 59.751 | 60.000 | 14.85 | 0.00 | 45.78 | 4.00 |
3071 | 4245 | 4.033709 | TCTTCTTTACATGGAGGAGGAGG | 58.966 | 47.826 | 0.00 | 0.00 | 0.00 | 4.30 |
3072 | 4246 | 4.141824 | GGTCTTCTTTACATGGAGGAGGAG | 60.142 | 50.000 | 0.00 | 0.00 | 0.00 | 3.69 |
3073 | 4247 | 3.775316 | GGTCTTCTTTACATGGAGGAGGA | 59.225 | 47.826 | 0.00 | 0.00 | 0.00 | 3.71 |
3074 | 4248 | 3.519510 | TGGTCTTCTTTACATGGAGGAGG | 59.480 | 47.826 | 0.00 | 0.00 | 0.00 | 4.30 |
3137 | 4311 | 4.188247 | TCGATTTACTCTGGACCAACAG | 57.812 | 45.455 | 0.00 | 0.00 | 39.84 | 3.16 |
3138 | 4312 | 4.566004 | CTTCGATTTACTCTGGACCAACA | 58.434 | 43.478 | 0.00 | 0.00 | 0.00 | 3.33 |
3139 | 4313 | 3.371285 | GCTTCGATTTACTCTGGACCAAC | 59.629 | 47.826 | 0.00 | 0.00 | 0.00 | 3.77 |
3176 | 4350 | 3.118702 | TGTGTGTCCGTACAGAGGAAAAA | 60.119 | 43.478 | 0.00 | 0.00 | 39.84 | 1.94 |
3177 | 4351 | 2.431419 | TGTGTGTCCGTACAGAGGAAAA | 59.569 | 45.455 | 0.00 | 0.00 | 39.84 | 2.29 |
3178 | 4352 | 2.033372 | TGTGTGTCCGTACAGAGGAAA | 58.967 | 47.619 | 0.00 | 0.00 | 39.84 | 3.13 |
3179 | 4353 | 1.694844 | TGTGTGTCCGTACAGAGGAA | 58.305 | 50.000 | 0.00 | 0.00 | 39.84 | 3.36 |
3180 | 4354 | 1.919240 | ATGTGTGTCCGTACAGAGGA | 58.081 | 50.000 | 0.00 | 0.00 | 35.91 | 3.71 |
3237 | 4411 | 3.633525 | ACAATTTGATGTCCGATGGATGG | 59.366 | 43.478 | 2.79 | 0.00 | 32.73 | 3.51 |
3246 | 4420 | 1.468054 | GCGCCTCACAATTTGATGTCC | 60.468 | 52.381 | 2.79 | 0.00 | 32.17 | 4.02 |
3255 | 4429 | 0.391661 | AAGTGATCGCGCCTCACAAT | 60.392 | 50.000 | 30.23 | 20.89 | 44.37 | 2.71 |
3257 | 4431 | 1.005037 | AAAGTGATCGCGCCTCACA | 60.005 | 52.632 | 30.23 | 12.30 | 44.37 | 3.58 |
3259 | 4433 | 0.108186 | ATGAAAGTGATCGCGCCTCA | 60.108 | 50.000 | 0.00 | 3.83 | 0.00 | 3.86 |
3306 | 4484 | 2.151202 | CGGTTGCAGTTATTGGTGTCT | 58.849 | 47.619 | 0.00 | 0.00 | 0.00 | 3.41 |
3326 | 4504 | 5.959618 | TCGATTTCCCCTTCTTCTTTTTC | 57.040 | 39.130 | 0.00 | 0.00 | 0.00 | 2.29 |
3379 | 4557 | 3.426568 | GTCCTGTTCCGCAGCAGC | 61.427 | 66.667 | 0.00 | 0.00 | 43.71 | 5.25 |
3387 | 4565 | 3.068732 | TCTGATCATCGATGTCCTGTTCC | 59.931 | 47.826 | 24.09 | 7.09 | 0.00 | 3.62 |
3391 | 4569 | 2.627221 | ACCTCTGATCATCGATGTCCTG | 59.373 | 50.000 | 24.09 | 18.61 | 0.00 | 3.86 |
3413 | 4591 | 1.640917 | TATTATGGGACGGAGGGAGC | 58.359 | 55.000 | 0.00 | 0.00 | 0.00 | 4.70 |
3436 | 4614 | 4.454504 | TCCCTCATAGCTTGAAAAACGTTC | 59.545 | 41.667 | 0.00 | 0.00 | 32.78 | 3.95 |
3437 | 4615 | 4.394729 | TCCCTCATAGCTTGAAAAACGTT | 58.605 | 39.130 | 0.00 | 0.00 | 32.78 | 3.99 |
3440 | 4618 | 7.051000 | AGATACTCCCTCATAGCTTGAAAAAC | 58.949 | 38.462 | 0.00 | 0.00 | 32.78 | 2.43 |
3450 | 4628 | 6.601613 | GGTGATACAGAGATACTCCCTCATAG | 59.398 | 46.154 | 0.00 | 0.00 | 33.25 | 2.23 |
3451 | 4629 | 6.275855 | AGGTGATACAGAGATACTCCCTCATA | 59.724 | 42.308 | 0.00 | 0.00 | 33.25 | 2.15 |
3452 | 4630 | 5.075761 | AGGTGATACAGAGATACTCCCTCAT | 59.924 | 44.000 | 0.00 | 0.00 | 33.25 | 2.90 |
3453 | 4631 | 4.417183 | AGGTGATACAGAGATACTCCCTCA | 59.583 | 45.833 | 0.00 | 0.00 | 33.25 | 3.86 |
3454 | 4632 | 4.993028 | AGGTGATACAGAGATACTCCCTC | 58.007 | 47.826 | 0.00 | 0.00 | 0.00 | 4.30 |
3455 | 4633 | 4.417183 | TGAGGTGATACAGAGATACTCCCT | 59.583 | 45.833 | 0.00 | 0.00 | 0.00 | 4.20 |
3456 | 4634 | 4.521256 | GTGAGGTGATACAGAGATACTCCC | 59.479 | 50.000 | 0.00 | 0.00 | 0.00 | 4.30 |
3457 | 4635 | 5.133941 | TGTGAGGTGATACAGAGATACTCC | 58.866 | 45.833 | 0.00 | 0.00 | 0.00 | 3.85 |
3458 | 4636 | 5.240623 | CCTGTGAGGTGATACAGAGATACTC | 59.759 | 48.000 | 5.99 | 0.00 | 45.46 | 2.59 |
3459 | 4637 | 5.136828 | CCTGTGAGGTGATACAGAGATACT | 58.863 | 45.833 | 5.99 | 0.00 | 45.46 | 2.12 |
3460 | 4638 | 4.279671 | CCCTGTGAGGTGATACAGAGATAC | 59.720 | 50.000 | 5.99 | 0.00 | 45.46 | 2.24 |
3461 | 4639 | 4.474394 | CCCTGTGAGGTGATACAGAGATA | 58.526 | 47.826 | 5.99 | 0.00 | 45.46 | 1.98 |
3466 | 4644 | 0.179000 | GCCCCTGTGAGGTGATACAG | 59.821 | 60.000 | 0.00 | 0.00 | 42.97 | 2.74 |
3479 | 4657 | 0.907486 | TGACAAGATCTGAGCCCCTG | 59.093 | 55.000 | 0.00 | 0.00 | 0.00 | 4.45 |
3480 | 4658 | 1.202330 | CTGACAAGATCTGAGCCCCT | 58.798 | 55.000 | 0.00 | 0.00 | 0.00 | 4.79 |
3481 | 4659 | 0.179936 | CCTGACAAGATCTGAGCCCC | 59.820 | 60.000 | 0.00 | 0.00 | 0.00 | 5.80 |
3482 | 4660 | 0.463474 | GCCTGACAAGATCTGAGCCC | 60.463 | 60.000 | 0.00 | 0.00 | 0.00 | 5.19 |
3483 | 4661 | 0.251354 | TGCCTGACAAGATCTGAGCC | 59.749 | 55.000 | 0.00 | 0.00 | 0.00 | 4.70 |
3484 | 4662 | 2.105006 | TTGCCTGACAAGATCTGAGC | 57.895 | 50.000 | 0.00 | 0.00 | 33.24 | 4.26 |
3503 | 4681 | 8.482128 | TGGGAAACTCAGTTTGTATCAATTTTT | 58.518 | 29.630 | 7.75 | 0.00 | 35.77 | 1.94 |
3504 | 4682 | 8.017418 | TGGGAAACTCAGTTTGTATCAATTTT | 57.983 | 30.769 | 7.75 | 0.00 | 35.77 | 1.82 |
3505 | 4683 | 7.595819 | TGGGAAACTCAGTTTGTATCAATTT | 57.404 | 32.000 | 7.75 | 0.00 | 35.77 | 1.82 |
3518 | 4696 | 1.134367 | CAGCATGCATGGGAAACTCAG | 59.866 | 52.381 | 27.34 | 2.74 | 0.00 | 3.35 |
3527 | 4705 | 3.023118 | CTCGCTCAGCATGCATGG | 58.977 | 61.111 | 27.34 | 12.41 | 34.76 | 3.66 |
3536 | 4714 | 1.515952 | CTTGGACTCGCTCGCTCAG | 60.516 | 63.158 | 0.00 | 0.00 | 0.00 | 3.35 |
3566 | 4744 | 0.517316 | CGAAAGAGTCGCCCAAAAGG | 59.483 | 55.000 | 0.00 | 0.00 | 44.14 | 3.11 |
3587 | 4765 | 1.539388 | CCTATTGTGCACGGCAGAAAA | 59.461 | 47.619 | 13.13 | 0.00 | 44.48 | 2.29 |
3589 | 4767 | 1.305219 | GCCTATTGTGCACGGCAGAA | 61.305 | 55.000 | 23.58 | 8.60 | 45.32 | 3.02 |
3607 | 4785 | 1.810151 | TCGTTGCCTCACCTTAATTGC | 59.190 | 47.619 | 0.00 | 0.00 | 0.00 | 3.56 |
3608 | 4786 | 3.181497 | CCATCGTTGCCTCACCTTAATTG | 60.181 | 47.826 | 0.00 | 0.00 | 0.00 | 2.32 |
3614 | 4796 | 0.036010 | CTTCCATCGTTGCCTCACCT | 60.036 | 55.000 | 0.00 | 0.00 | 0.00 | 4.00 |
3617 | 4799 | 1.554617 | TCATCTTCCATCGTTGCCTCA | 59.445 | 47.619 | 0.00 | 0.00 | 0.00 | 3.86 |
3622 | 4804 | 4.388773 | TCTTCGTTTCATCTTCCATCGTTG | 59.611 | 41.667 | 0.00 | 0.00 | 0.00 | 4.10 |
3678 | 4860 | 5.712917 | ACACCTTATCTTCTTCGTCTTCTCT | 59.287 | 40.000 | 0.00 | 0.00 | 0.00 | 3.10 |
3680 | 4862 | 5.336849 | CCACACCTTATCTTCTTCGTCTTCT | 60.337 | 44.000 | 0.00 | 0.00 | 0.00 | 2.85 |
3686 | 4868 | 3.252974 | AGCCACACCTTATCTTCTTCG | 57.747 | 47.619 | 0.00 | 0.00 | 0.00 | 3.79 |
3737 | 4919 | 5.376625 | TGGACCAATAATGCTCCAATACTC | 58.623 | 41.667 | 0.00 | 0.00 | 38.17 | 2.59 |
3738 | 4920 | 5.387113 | TGGACCAATAATGCTCCAATACT | 57.613 | 39.130 | 0.00 | 0.00 | 38.17 | 2.12 |
3739 | 4921 | 5.106555 | CGATGGACCAATAATGCTCCAATAC | 60.107 | 44.000 | 0.00 | 0.00 | 43.01 | 1.89 |
3740 | 4922 | 5.003160 | CGATGGACCAATAATGCTCCAATA | 58.997 | 41.667 | 0.00 | 0.00 | 43.01 | 1.90 |
3741 | 4923 | 3.822735 | CGATGGACCAATAATGCTCCAAT | 59.177 | 43.478 | 0.00 | 0.00 | 43.01 | 3.16 |
3742 | 4924 | 3.213506 | CGATGGACCAATAATGCTCCAA | 58.786 | 45.455 | 0.00 | 0.00 | 43.01 | 3.53 |
3743 | 4925 | 2.172505 | ACGATGGACCAATAATGCTCCA | 59.827 | 45.455 | 0.00 | 0.00 | 43.70 | 3.86 |
3744 | 4926 | 2.549754 | CACGATGGACCAATAATGCTCC | 59.450 | 50.000 | 0.00 | 0.00 | 32.70 | 4.70 |
3783 | 4965 | 3.056536 | TCTTGAGACTCGGACATCAAAGG | 60.057 | 47.826 | 0.00 | 0.00 | 31.70 | 3.11 |
3784 | 4966 | 4.172505 | CTCTTGAGACTCGGACATCAAAG | 58.827 | 47.826 | 0.00 | 0.00 | 31.70 | 2.77 |
3786 | 4968 | 2.094494 | GCTCTTGAGACTCGGACATCAA | 60.094 | 50.000 | 1.30 | 0.00 | 0.00 | 2.57 |
3789 | 4971 | 1.550327 | TGCTCTTGAGACTCGGACAT | 58.450 | 50.000 | 1.30 | 0.00 | 0.00 | 3.06 |
3795 | 4977 | 1.938625 | GGCTCATGCTCTTGAGACTC | 58.061 | 55.000 | 14.56 | 0.00 | 46.44 | 3.36 |
3808 | 4990 | 2.484417 | GGAGAATGATCGTGTGGCTCAT | 60.484 | 50.000 | 0.00 | 0.00 | 0.00 | 2.90 |
3826 | 5008 | 3.391506 | TGATCCATTCATACTGCGGAG | 57.608 | 47.619 | 0.85 | 0.85 | 0.00 | 4.63 |
3830 | 5012 | 6.395426 | TGGAAAATGATCCATTCATACTGC | 57.605 | 37.500 | 0.00 | 0.00 | 44.51 | 4.40 |
3863 | 5045 | 0.443869 | CATGAGCAAGCACACGGTAC | 59.556 | 55.000 | 0.00 | 0.00 | 0.00 | 3.34 |
3864 | 5046 | 0.673333 | CCATGAGCAAGCACACGGTA | 60.673 | 55.000 | 0.00 | 0.00 | 0.00 | 4.02 |
3865 | 5047 | 1.968017 | CCATGAGCAAGCACACGGT | 60.968 | 57.895 | 0.00 | 0.00 | 0.00 | 4.83 |
3866 | 5048 | 1.968017 | ACCATGAGCAAGCACACGG | 60.968 | 57.895 | 3.13 | 3.13 | 0.00 | 4.94 |
3867 | 5049 | 1.208358 | CACCATGAGCAAGCACACG | 59.792 | 57.895 | 0.00 | 0.00 | 0.00 | 4.49 |
3868 | 5050 | 1.582968 | CCACCATGAGCAAGCACAC | 59.417 | 57.895 | 0.00 | 0.00 | 0.00 | 3.82 |
3872 | 5054 | 3.818787 | CCGCCACCATGAGCAAGC | 61.819 | 66.667 | 0.00 | 0.00 | 0.00 | 4.01 |
3881 | 5063 | 4.954118 | AGACCACCTCCGCCACCA | 62.954 | 66.667 | 0.00 | 0.00 | 0.00 | 4.17 |
3887 | 5069 | 2.125912 | CGCTGAAGACCACCTCCG | 60.126 | 66.667 | 0.00 | 0.00 | 0.00 | 4.63 |
3907 | 5089 | 0.960364 | ATTAGCAACCAGGCACCGTG | 60.960 | 55.000 | 0.00 | 0.00 | 35.83 | 4.94 |
3908 | 5090 | 0.960364 | CATTAGCAACCAGGCACCGT | 60.960 | 55.000 | 0.00 | 0.00 | 35.83 | 4.83 |
3917 | 5101 | 4.989279 | ACCAATGATCACATTAGCAACC | 57.011 | 40.909 | 0.00 | 0.00 | 43.76 | 3.77 |
3935 | 5119 | 7.189079 | TGTCTTGGTATATGTGATGTTACCA | 57.811 | 36.000 | 0.00 | 0.00 | 41.69 | 3.25 |
3948 | 5132 | 8.058667 | TCGTAGACTCATTTTGTCTTGGTATA | 57.941 | 34.615 | 1.67 | 0.00 | 41.45 | 1.47 |
3984 | 5168 | 9.603298 | CATATGTGTGATGTTATGCAATACTTC | 57.397 | 33.333 | 0.00 | 0.38 | 0.00 | 3.01 |
3989 | 5173 | 9.123902 | AGTAACATATGTGTGATGTTATGCAAT | 57.876 | 29.630 | 9.63 | 0.00 | 46.23 | 3.56 |
3996 | 5180 | 5.045213 | TGGGGAGTAACATATGTGTGATGTT | 60.045 | 40.000 | 9.63 | 6.29 | 46.59 | 2.71 |
4000 | 5184 | 4.101114 | AGTGGGGAGTAACATATGTGTGA | 58.899 | 43.478 | 9.63 | 0.00 | 38.92 | 3.58 |
4002 | 5186 | 7.302948 | TCTATAGTGGGGAGTAACATATGTGT | 58.697 | 38.462 | 9.63 | 2.63 | 41.28 | 3.72 |
4018 | 5202 | 8.349568 | TGCATATGTTACTACCTCTATAGTGG | 57.650 | 38.462 | 17.49 | 17.49 | 36.09 | 4.00 |
4054 | 5238 | 7.367828 | ACTATCCATAGTGGGGAGTAACTTAA | 58.632 | 38.462 | 0.00 | 0.00 | 41.77 | 1.85 |
4058 | 5242 | 5.395611 | AGACTATCCATAGTGGGGAGTAAC | 58.604 | 45.833 | 3.88 | 0.00 | 43.27 | 2.50 |
4067 | 5251 | 8.535335 | ACAATAGGCATTAGACTATCCATAGTG | 58.465 | 37.037 | 3.88 | 0.00 | 45.51 | 2.74 |
4068 | 5252 | 8.671987 | ACAATAGGCATTAGACTATCCATAGT | 57.328 | 34.615 | 0.00 | 0.00 | 45.51 | 2.12 |
4069 | 5253 | 9.376075 | CAACAATAGGCATTAGACTATCCATAG | 57.624 | 37.037 | 0.00 | 0.00 | 45.51 | 2.23 |
4070 | 5254 | 8.880244 | ACAACAATAGGCATTAGACTATCCATA | 58.120 | 33.333 | 0.00 | 0.00 | 45.51 | 2.74 |
4071 | 5255 | 7.663081 | CACAACAATAGGCATTAGACTATCCAT | 59.337 | 37.037 | 0.00 | 0.00 | 45.51 | 3.41 |
4072 | 5256 | 6.992123 | CACAACAATAGGCATTAGACTATCCA | 59.008 | 38.462 | 0.00 | 0.00 | 45.51 | 3.41 |
4073 | 5257 | 6.073003 | GCACAACAATAGGCATTAGACTATCC | 60.073 | 42.308 | 0.00 | 0.00 | 45.51 | 2.59 |
4074 | 5258 | 6.708054 | AGCACAACAATAGGCATTAGACTATC | 59.292 | 38.462 | 0.00 | 0.00 | 45.51 | 2.08 |
4076 | 5260 | 5.817296 | CAGCACAACAATAGGCATTAGACTA | 59.183 | 40.000 | 0.00 | 0.00 | 40.37 | 2.59 |
4077 | 5261 | 4.637534 | CAGCACAACAATAGGCATTAGACT | 59.362 | 41.667 | 0.00 | 0.00 | 36.68 | 3.24 |
4078 | 5262 | 4.396166 | ACAGCACAACAATAGGCATTAGAC | 59.604 | 41.667 | 0.00 | 0.00 | 0.00 | 2.59 |
4079 | 5263 | 4.588899 | ACAGCACAACAATAGGCATTAGA | 58.411 | 39.130 | 0.00 | 0.00 | 0.00 | 2.10 |
4080 | 5264 | 4.970662 | ACAGCACAACAATAGGCATTAG | 57.029 | 40.909 | 0.00 | 0.00 | 0.00 | 1.73 |
4081 | 5265 | 6.825944 | TTAACAGCACAACAATAGGCATTA | 57.174 | 33.333 | 0.00 | 0.00 | 0.00 | 1.90 |
4082 | 5266 | 5.720371 | TTAACAGCACAACAATAGGCATT | 57.280 | 34.783 | 0.00 | 0.00 | 0.00 | 3.56 |
4083 | 5267 | 5.720371 | TTTAACAGCACAACAATAGGCAT | 57.280 | 34.783 | 0.00 | 0.00 | 0.00 | 4.40 |
4084 | 5268 | 5.521906 | TTTTAACAGCACAACAATAGGCA | 57.478 | 34.783 | 0.00 | 0.00 | 0.00 | 4.75 |
4085 | 5269 | 5.405269 | CCTTTTTAACAGCACAACAATAGGC | 59.595 | 40.000 | 0.00 | 0.00 | 0.00 | 3.93 |
4086 | 5270 | 6.420604 | CACCTTTTTAACAGCACAACAATAGG | 59.579 | 38.462 | 0.00 | 0.00 | 0.00 | 2.57 |
4087 | 5271 | 7.199766 | TCACCTTTTTAACAGCACAACAATAG | 58.800 | 34.615 | 0.00 | 0.00 | 0.00 | 1.73 |
4088 | 5272 | 7.101652 | TCACCTTTTTAACAGCACAACAATA | 57.898 | 32.000 | 0.00 | 0.00 | 0.00 | 1.90 |
4089 | 5273 | 5.971763 | TCACCTTTTTAACAGCACAACAAT | 58.028 | 33.333 | 0.00 | 0.00 | 0.00 | 2.71 |
4090 | 5274 | 5.392767 | TCACCTTTTTAACAGCACAACAA | 57.607 | 34.783 | 0.00 | 0.00 | 0.00 | 2.83 |
4091 | 5275 | 5.392767 | TTCACCTTTTTAACAGCACAACA | 57.607 | 34.783 | 0.00 | 0.00 | 0.00 | 3.33 |
4092 | 5276 | 5.220397 | GCTTTCACCTTTTTAACAGCACAAC | 60.220 | 40.000 | 0.00 | 0.00 | 0.00 | 3.32 |
4093 | 5277 | 4.867608 | GCTTTCACCTTTTTAACAGCACAA | 59.132 | 37.500 | 0.00 | 0.00 | 0.00 | 3.33 |
4094 | 5278 | 4.081972 | TGCTTTCACCTTTTTAACAGCACA | 60.082 | 37.500 | 0.00 | 0.00 | 31.17 | 4.57 |
4095 | 5279 | 4.429108 | TGCTTTCACCTTTTTAACAGCAC | 58.571 | 39.130 | 0.00 | 0.00 | 31.17 | 4.40 |
4096 | 5280 | 4.681744 | CTGCTTTCACCTTTTTAACAGCA | 58.318 | 39.130 | 0.00 | 0.00 | 34.88 | 4.41 |
4097 | 5281 | 3.490896 | GCTGCTTTCACCTTTTTAACAGC | 59.509 | 43.478 | 0.00 | 0.00 | 40.89 | 4.40 |
4098 | 5282 | 3.730715 | CGCTGCTTTCACCTTTTTAACAG | 59.269 | 43.478 | 0.00 | 0.00 | 0.00 | 3.16 |
4099 | 5283 | 3.490078 | CCGCTGCTTTCACCTTTTTAACA | 60.490 | 43.478 | 0.00 | 0.00 | 0.00 | 2.41 |
4100 | 5284 | 3.049912 | CCGCTGCTTTCACCTTTTTAAC | 58.950 | 45.455 | 0.00 | 0.00 | 0.00 | 2.01 |
4101 | 5285 | 2.691011 | ACCGCTGCTTTCACCTTTTTAA | 59.309 | 40.909 | 0.00 | 0.00 | 0.00 | 1.52 |
4102 | 5286 | 2.034053 | CACCGCTGCTTTCACCTTTTTA | 59.966 | 45.455 | 0.00 | 0.00 | 0.00 | 1.52 |
4103 | 5287 | 1.111277 | ACCGCTGCTTTCACCTTTTT | 58.889 | 45.000 | 0.00 | 0.00 | 0.00 | 1.94 |
4104 | 5288 | 0.385390 | CACCGCTGCTTTCACCTTTT | 59.615 | 50.000 | 0.00 | 0.00 | 0.00 | 2.27 |
4105 | 5289 | 0.465460 | TCACCGCTGCTTTCACCTTT | 60.465 | 50.000 | 0.00 | 0.00 | 0.00 | 3.11 |
4106 | 5290 | 0.886490 | CTCACCGCTGCTTTCACCTT | 60.886 | 55.000 | 0.00 | 0.00 | 0.00 | 3.50 |
4107 | 5291 | 1.302033 | CTCACCGCTGCTTTCACCT | 60.302 | 57.895 | 0.00 | 0.00 | 0.00 | 4.00 |
4108 | 5292 | 2.328099 | CCTCACCGCTGCTTTCACC | 61.328 | 63.158 | 0.00 | 0.00 | 0.00 | 4.02 |
4109 | 5293 | 2.970974 | GCCTCACCGCTGCTTTCAC | 61.971 | 63.158 | 0.00 | 0.00 | 0.00 | 3.18 |
4110 | 5294 | 2.669569 | GCCTCACCGCTGCTTTCA | 60.670 | 61.111 | 0.00 | 0.00 | 0.00 | 2.69 |
4111 | 5295 | 2.260869 | TTGCCTCACCGCTGCTTTC | 61.261 | 57.895 | 0.00 | 0.00 | 0.00 | 2.62 |
4112 | 5296 | 2.203337 | TTGCCTCACCGCTGCTTT | 60.203 | 55.556 | 0.00 | 0.00 | 0.00 | 3.51 |
4113 | 5297 | 2.980233 | GTTGCCTCACCGCTGCTT | 60.980 | 61.111 | 0.00 | 0.00 | 0.00 | 3.91 |
4116 | 5300 | 1.926511 | GATTGGTTGCCTCACCGCTG | 61.927 | 60.000 | 0.00 | 0.00 | 40.09 | 5.18 |
4117 | 5301 | 1.675641 | GATTGGTTGCCTCACCGCT | 60.676 | 57.895 | 0.00 | 0.00 | 40.09 | 5.52 |
4118 | 5302 | 2.877691 | GATTGGTTGCCTCACCGC | 59.122 | 61.111 | 0.00 | 0.00 | 40.09 | 5.68 |
4119 | 5303 | 1.375396 | TCGATTGGTTGCCTCACCG | 60.375 | 57.895 | 0.00 | 0.00 | 40.09 | 4.94 |
4120 | 5304 | 0.605319 | TGTCGATTGGTTGCCTCACC | 60.605 | 55.000 | 0.00 | 0.00 | 37.34 | 4.02 |
4121 | 5305 | 0.517316 | GTGTCGATTGGTTGCCTCAC | 59.483 | 55.000 | 0.00 | 0.00 | 0.00 | 3.51 |
4122 | 5306 | 0.605319 | GGTGTCGATTGGTTGCCTCA | 60.605 | 55.000 | 0.00 | 0.00 | 0.00 | 3.86 |
4123 | 5307 | 1.305930 | GGGTGTCGATTGGTTGCCTC | 61.306 | 60.000 | 0.00 | 0.00 | 0.00 | 4.70 |
4124 | 5308 | 1.303317 | GGGTGTCGATTGGTTGCCT | 60.303 | 57.895 | 0.00 | 0.00 | 0.00 | 4.75 |
4125 | 5309 | 0.965363 | ATGGGTGTCGATTGGTTGCC | 60.965 | 55.000 | 0.00 | 0.00 | 0.00 | 4.52 |
4126 | 5310 | 0.451783 | GATGGGTGTCGATTGGTTGC | 59.548 | 55.000 | 0.00 | 0.00 | 0.00 | 4.17 |
4127 | 5311 | 1.094785 | GGATGGGTGTCGATTGGTTG | 58.905 | 55.000 | 0.00 | 0.00 | 0.00 | 3.77 |
4128 | 5312 | 0.034477 | GGGATGGGTGTCGATTGGTT | 60.034 | 55.000 | 0.00 | 0.00 | 0.00 | 3.67 |
4129 | 5313 | 1.204786 | TGGGATGGGTGTCGATTGGT | 61.205 | 55.000 | 0.00 | 0.00 | 0.00 | 3.67 |
4130 | 5314 | 0.034574 | TTGGGATGGGTGTCGATTGG | 60.035 | 55.000 | 0.00 | 0.00 | 0.00 | 3.16 |
4131 | 5315 | 3.568000 | TTGGGATGGGTGTCGATTG | 57.432 | 52.632 | 0.00 | 0.00 | 0.00 | 2.67 |
![](/static/images/cyverse_long.png)
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.