Multiple sequence alignment - TraesCS6D01G005000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G005000 chr6D 100.000 3795 0 0 1 3795 2269033 2272827 0.000000e+00 7009.0
1 TraesCS6D01G005000 chr6B 85.633 1768 134 58 1705 3407 3885046 3883334 0.000000e+00 1748.0
2 TraesCS6D01G005000 chr6B 86.486 444 23 13 2 435 3887279 3886863 1.610000e-123 453.0
3 TraesCS6D01G005000 chr6B 90.141 213 13 2 1151 1355 3885619 3885407 1.740000e-68 270.0
4 TraesCS6D01G005000 chr6B 90.173 173 11 4 3623 3795 3883158 3882992 1.770000e-53 220.0
5 TraesCS6D01G005000 chr6B 81.159 207 19 5 1508 1698 3885283 3885081 8.490000e-32 148.0
6 TraesCS6D01G005000 chr6B 92.857 56 1 2 1050 1102 3885753 3885698 1.130000e-10 78.7
7 TraesCS6D01G005000 chr6A 88.033 1103 66 42 2344 3413 636145 637214 0.000000e+00 1245.0
8 TraesCS6D01G005000 chr6A 86.491 570 54 15 1913 2467 635623 636184 4.190000e-169 604.0
9 TraesCS6D01G005000 chr6A 87.474 479 34 18 890 1348 634623 635095 2.600000e-146 529.0
10 TraesCS6D01G005000 chr6A 83.747 443 20 17 1 419 633401 633815 4.630000e-99 372.0
11 TraesCS6D01G005000 chr6A 80.523 421 28 18 1486 1864 635202 635610 1.340000e-69 274.0
12 TraesCS6D01G005000 chr6A 88.757 169 12 6 3439 3606 637417 637579 2.310000e-47 200.0
13 TraesCS6D01G005000 chr6A 92.742 124 8 1 3673 3795 637594 637717 1.080000e-40 178.0
14 TraesCS6D01G005000 chr3B 78.187 353 15 21 3446 3795 772894889 772895182 6.520000e-38 169.0
15 TraesCS6D01G005000 chr3B 82.424 165 11 9 3049 3211 772894371 772894519 1.110000e-25 128.0
16 TraesCS6D01G005000 chr3B 86.364 110 8 4 2610 2712 772894237 772894346 3.100000e-21 113.0
17 TraesCS6D01G005000 chr7A 90.323 62 6 0 1260 1321 624466998 624467059 8.740000e-12 82.4
18 TraesCS6D01G005000 chr7B 97.436 39 1 0 1254 1292 541685836 541685874 2.450000e-07 67.6
19 TraesCS6D01G005000 chr7B 97.436 39 1 0 1254 1292 542878750 542878788 2.450000e-07 67.6
20 TraesCS6D01G005000 chr7B 97.436 39 1 0 1254 1292 542980396 542980434 2.450000e-07 67.6
21 TraesCS6D01G005000 chr3A 94.872 39 2 0 1254 1292 668573316 668573278 1.140000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G005000 chr6D 2269033 2272827 3794 False 7009.000000 7009 100.000000 1 3795 1 chr6D.!!$F1 3794
1 TraesCS6D01G005000 chr6B 3882992 3887279 4287 True 486.283333 1748 87.741500 2 3795 6 chr6B.!!$R1 3793
2 TraesCS6D01G005000 chr6A 633401 637717 4316 False 486.000000 1245 86.823857 1 3795 7 chr6A.!!$F1 3794

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
624 1124 0.039618 TCCTGTGGGGGCTTTTGATC 59.960 55.0 0.0 0.0 35.33 2.92 F
1355 2264 0.032416 CGACCTCCCTCCCTTTCCTA 60.032 60.0 0.0 0.0 0.00 2.94 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2040 3042 0.027979 CATCCTTGTTATGCACGCCG 59.972 55.0 0.00 0.00 0.00 6.46 R
3233 4409 0.098905 ATCATCGACGTCACGTGGAG 59.901 55.0 20.07 12.13 46.21 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
77 78 2.052690 GCCTCGACTAGCCCTGTGA 61.053 63.158 0.00 0.00 0.00 3.58
102 103 4.439305 TTTTTGCTCCTTGATTGATCCG 57.561 40.909 0.00 0.00 0.00 4.18
103 104 1.382522 TTGCTCCTTGATTGATCCGC 58.617 50.000 0.00 0.00 0.00 5.54
104 105 0.464373 TGCTCCTTGATTGATCCGCC 60.464 55.000 0.00 0.00 0.00 6.13
105 106 1.502163 GCTCCTTGATTGATCCGCCG 61.502 60.000 0.00 0.00 0.00 6.46
106 107 1.502163 CTCCTTGATTGATCCGCCGC 61.502 60.000 0.00 0.00 0.00 6.53
107 108 1.819208 CCTTGATTGATCCGCCGCA 60.819 57.895 0.00 0.00 0.00 5.69
143 144 4.697352 GTGATATAATTGGGCTAGGCTGTG 59.303 45.833 16.80 0.00 0.00 3.66
144 145 4.350816 TGATATAATTGGGCTAGGCTGTGT 59.649 41.667 16.80 2.53 0.00 3.72
154 155 2.740055 GGCTGTGTGAGGCTGTCG 60.740 66.667 0.00 0.00 44.09 4.35
178 179 0.494551 TTTGTACCCCCTCCTCTCCA 59.505 55.000 0.00 0.00 0.00 3.86
227 252 6.422400 GCGAAGAAGAAGAAGAAGAAGAAGAA 59.578 38.462 0.00 0.00 0.00 2.52
228 253 7.359181 GCGAAGAAGAAGAAGAAGAAGAAGAAG 60.359 40.741 0.00 0.00 0.00 2.85
234 259 3.576550 AGAAGAAGAAGAAGAAGCGGAGT 59.423 43.478 0.00 0.00 0.00 3.85
237 263 0.528470 AGAAGAAGAAGCGGAGTCGG 59.472 55.000 0.00 0.00 36.79 4.79
239 265 0.966920 AAGAAGAAGCGGAGTCGGAA 59.033 50.000 1.18 0.00 36.79 4.30
252 278 4.182339 GGAGTCGGAAGAAGTGTAATTCC 58.818 47.826 0.00 0.00 45.01 3.01
290 316 6.294473 AGTTTGGTTAGCTAGATGATGATGG 58.706 40.000 0.00 0.00 0.00 3.51
296 322 6.126825 GGTTAGCTAGATGATGATGGATGGAT 60.127 42.308 0.00 0.00 0.00 3.41
301 327 5.578157 AGATGATGATGGATGGATTCACA 57.422 39.130 0.00 0.00 0.00 3.58
304 330 6.434340 AGATGATGATGGATGGATTCACAATG 59.566 38.462 0.00 0.00 0.00 2.82
351 377 1.522668 CGCCCATGTTTTGACAGAGA 58.477 50.000 0.00 0.00 0.00 3.10
447 498 0.322277 CTGATGACAGTGGCTTGCCT 60.322 55.000 13.18 0.00 39.11 4.75
451 502 1.032014 TGACAGTGGCTTGCCTTTTC 58.968 50.000 13.18 4.90 0.00 2.29
455 506 1.836604 GTGGCTTGCCTTTTCCCCA 60.837 57.895 13.18 0.00 0.00 4.96
468 527 3.628832 TTTCCCCAGAAAAATCCCAGT 57.371 42.857 0.00 0.00 39.05 4.00
477 536 6.183360 CCCAGAAAAATCCCAGTATGAATGAC 60.183 42.308 0.00 0.00 39.69 3.06
478 537 6.183360 CCAGAAAAATCCCAGTATGAATGACC 60.183 42.308 0.00 0.00 39.69 4.02
479 538 6.604795 CAGAAAAATCCCAGTATGAATGACCT 59.395 38.462 0.00 0.00 39.69 3.85
480 539 6.604795 AGAAAAATCCCAGTATGAATGACCTG 59.395 38.462 0.00 0.00 39.69 4.00
481 540 5.715439 AAATCCCAGTATGAATGACCTGA 57.285 39.130 0.00 0.00 39.69 3.86
482 541 5.919348 AATCCCAGTATGAATGACCTGAT 57.081 39.130 0.00 0.00 39.69 2.90
483 542 4.694760 TCCCAGTATGAATGACCTGATG 57.305 45.455 0.00 0.00 39.69 3.07
484 543 4.040047 TCCCAGTATGAATGACCTGATGT 58.960 43.478 0.00 0.00 39.69 3.06
485 544 4.132336 CCCAGTATGAATGACCTGATGTG 58.868 47.826 0.00 0.00 39.69 3.21
486 545 3.562973 CCAGTATGAATGACCTGATGTGC 59.437 47.826 0.00 0.00 39.69 4.57
488 547 4.272748 CAGTATGAATGACCTGATGTGCTG 59.727 45.833 0.00 0.00 39.69 4.41
500 691 4.142160 CCTGATGTGCTGTAGCTTGTACTA 60.142 45.833 5.38 0.00 42.66 1.82
508 810 7.137426 GTGCTGTAGCTTGTACTACGTAATAT 58.863 38.462 5.38 0.00 44.55 1.28
534 836 3.568538 CAACTAGCATCTTGTTGGTTGC 58.431 45.455 11.45 0.00 41.30 4.17
538 840 1.610522 AGCATCTTGTTGGTTGCTGTC 59.389 47.619 0.00 0.00 43.44 3.51
541 843 1.967319 TCTTGTTGGTTGCTGTCTCC 58.033 50.000 0.00 0.00 0.00 3.71
542 844 0.954452 CTTGTTGGTTGCTGTCTCCC 59.046 55.000 0.00 0.00 0.00 4.30
543 845 0.550914 TTGTTGGTTGCTGTCTCCCT 59.449 50.000 0.00 0.00 0.00 4.20
547 855 1.691196 TGGTTGCTGTCTCCCTTTTG 58.309 50.000 0.00 0.00 0.00 2.44
550 858 2.489722 GGTTGCTGTCTCCCTTTTGATC 59.510 50.000 0.00 0.00 0.00 2.92
557 865 5.126707 GCTGTCTCCCTTTTGATCATTTCAT 59.873 40.000 0.00 0.00 33.34 2.57
558 866 6.319658 GCTGTCTCCCTTTTGATCATTTCATA 59.680 38.462 0.00 0.00 33.34 2.15
582 930 5.816449 TGGCATATGTATATTTGGATGCG 57.184 39.130 4.29 0.00 40.42 4.73
589 937 4.702831 TGTATATTTGGATGCGAGCTTGA 58.297 39.130 4.70 0.00 0.00 3.02
590 938 5.308014 TGTATATTTGGATGCGAGCTTGAT 58.692 37.500 4.70 0.00 0.00 2.57
594 942 4.818534 TTTGGATGCGAGCTTGATTATC 57.181 40.909 4.70 5.06 0.00 1.75
595 943 2.771089 TGGATGCGAGCTTGATTATCC 58.229 47.619 18.46 18.46 35.72 2.59
596 944 2.369860 TGGATGCGAGCTTGATTATCCT 59.630 45.455 22.55 0.00 36.06 3.24
607 1107 8.233190 CGAGCTTGATTATCCTTTTGATTATCC 58.767 37.037 0.00 0.00 38.27 2.59
610 1110 8.854117 GCTTGATTATCCTTTTGATTATCCTGT 58.146 33.333 0.00 0.00 38.27 4.00
612 1112 8.696043 TGATTATCCTTTTGATTATCCTGTGG 57.304 34.615 0.00 0.00 38.27 4.17
613 1113 7.725397 TGATTATCCTTTTGATTATCCTGTGGG 59.275 37.037 0.00 0.00 38.27 4.61
614 1114 4.249638 TCCTTTTGATTATCCTGTGGGG 57.750 45.455 0.00 0.00 0.00 4.96
616 1116 2.452600 TTTGATTATCCTGTGGGGGC 57.547 50.000 0.00 0.00 35.33 5.80
617 1117 1.607225 TTGATTATCCTGTGGGGGCT 58.393 50.000 0.00 0.00 35.33 5.19
618 1118 1.607225 TGATTATCCTGTGGGGGCTT 58.393 50.000 0.00 0.00 35.33 4.35
620 1120 2.314549 TGATTATCCTGTGGGGGCTTTT 59.685 45.455 0.00 0.00 35.33 2.27
622 1122 1.377690 TATCCTGTGGGGGCTTTTGA 58.622 50.000 0.00 0.00 35.33 2.69
624 1124 0.039618 TCCTGTGGGGGCTTTTGATC 59.960 55.000 0.00 0.00 35.33 2.92
625 1125 0.251742 CCTGTGGGGGCTTTTGATCA 60.252 55.000 0.00 0.00 0.00 2.92
627 1127 2.181975 CTGTGGGGGCTTTTGATCATT 58.818 47.619 0.00 0.00 0.00 2.57
629 1129 2.566724 TGTGGGGGCTTTTGATCATTTC 59.433 45.455 0.00 0.00 0.00 2.17
630 1130 2.566724 GTGGGGGCTTTTGATCATTTCA 59.433 45.455 0.00 0.00 0.00 2.69
632 1132 4.405358 GTGGGGGCTTTTGATCATTTCATA 59.595 41.667 0.00 0.00 33.34 2.15
634 1134 5.666718 TGGGGGCTTTTGATCATTTCATATT 59.333 36.000 0.00 0.00 33.34 1.28
635 1135 6.183360 TGGGGGCTTTTGATCATTTCATATTC 60.183 38.462 0.00 0.00 33.34 1.75
636 1136 5.922544 GGGGCTTTTGATCATTTCATATTCG 59.077 40.000 0.00 0.00 33.34 3.34
637 1137 5.403466 GGGCTTTTGATCATTTCATATTCGC 59.597 40.000 0.00 0.00 33.34 4.70
638 1138 5.978919 GGCTTTTGATCATTTCATATTCGCA 59.021 36.000 0.00 0.00 33.34 5.10
640 1140 7.809331 GGCTTTTGATCATTTCATATTCGCATA 59.191 33.333 0.00 0.00 33.34 3.14
641 1141 9.350357 GCTTTTGATCATTTCATATTCGCATAT 57.650 29.630 0.00 0.00 33.34 1.78
643 1143 8.677871 TTTGATCATTTCATATTCGCATATGC 57.322 30.769 18.08 18.08 41.55 3.14
644 1144 7.380431 TGATCATTTCATATTCGCATATGCA 57.620 32.000 26.52 9.36 41.55 3.96
649 1252 9.724839 TCATTTCATATTCGCATATGCATATTG 57.275 29.630 26.52 16.05 41.55 1.90
662 1265 1.815003 GCATATTGGGCATGGCTCTAC 59.185 52.381 19.78 2.57 0.00 2.59
663 1266 2.079158 CATATTGGGCATGGCTCTACG 58.921 52.381 19.78 0.16 0.00 3.51
684 1291 6.604735 ACGTATTTCACAGCTTGATTATCC 57.395 37.500 0.00 0.00 32.84 2.59
700 1307 2.825861 ATCCTGTTGCTGCCTTTTTG 57.174 45.000 0.00 0.00 0.00 2.44
704 1311 2.102252 CCTGTTGCTGCCTTTTTGGTTA 59.898 45.455 0.00 0.00 38.35 2.85
709 1316 6.349300 TGTTGCTGCCTTTTTGGTTATTTTA 58.651 32.000 0.00 0.00 38.35 1.52
710 1317 6.995091 TGTTGCTGCCTTTTTGGTTATTTTAT 59.005 30.769 0.00 0.00 38.35 1.40
711 1318 8.150945 TGTTGCTGCCTTTTTGGTTATTTTATA 58.849 29.630 0.00 0.00 38.35 0.98
712 1319 8.994170 GTTGCTGCCTTTTTGGTTATTTTATAA 58.006 29.630 0.00 0.00 38.35 0.98
713 1320 9.561069 TTGCTGCCTTTTTGGTTATTTTATAAA 57.439 25.926 0.00 0.00 38.35 1.40
746 1353 3.254411 GGAGGAAAAGAGGAGTTTTGCAG 59.746 47.826 3.86 0.00 39.49 4.41
766 1376 5.473039 GCAGATGCAAAGATGGTAACTTTT 58.527 37.500 0.00 0.00 41.59 2.27
767 1377 5.928264 GCAGATGCAAAGATGGTAACTTTTT 59.072 36.000 0.00 0.00 41.59 1.94
808 1418 3.206211 GAGGAGGAGCGAGCGATGG 62.206 68.421 0.00 0.00 0.00 3.51
809 1419 4.292178 GGAGGAGCGAGCGATGGG 62.292 72.222 0.00 0.00 0.00 4.00
810 1420 3.219928 GAGGAGCGAGCGATGGGA 61.220 66.667 0.00 0.00 0.00 4.37
811 1421 2.522923 AGGAGCGAGCGATGGGAT 60.523 61.111 0.00 0.00 0.00 3.85
812 1422 2.093537 GAGGAGCGAGCGATGGGATT 62.094 60.000 0.00 0.00 0.00 3.01
813 1423 1.958205 GGAGCGAGCGATGGGATTG 60.958 63.158 0.00 0.00 0.00 2.67
814 1424 1.068083 GAGCGAGCGATGGGATTGA 59.932 57.895 0.00 0.00 0.00 2.57
815 1425 0.943359 GAGCGAGCGATGGGATTGAG 60.943 60.000 0.00 0.00 0.00 3.02
816 1426 1.068083 GCGAGCGATGGGATTGAGA 59.932 57.895 0.00 0.00 0.00 3.27
817 1427 0.320247 GCGAGCGATGGGATTGAGAT 60.320 55.000 0.00 0.00 0.00 2.75
818 1428 1.875576 GCGAGCGATGGGATTGAGATT 60.876 52.381 0.00 0.00 0.00 2.40
819 1429 1.797046 CGAGCGATGGGATTGAGATTG 59.203 52.381 0.00 0.00 0.00 2.67
820 1430 2.546584 CGAGCGATGGGATTGAGATTGA 60.547 50.000 0.00 0.00 0.00 2.57
821 1431 3.065655 GAGCGATGGGATTGAGATTGAG 58.934 50.000 0.00 0.00 0.00 3.02
860 1470 2.630889 TGATCCTTCCAGAGTCCAGT 57.369 50.000 0.00 0.00 0.00 4.00
861 1471 2.461695 TGATCCTTCCAGAGTCCAGTC 58.538 52.381 0.00 0.00 0.00 3.51
862 1472 2.043664 TGATCCTTCCAGAGTCCAGTCT 59.956 50.000 0.00 0.00 0.00 3.24
863 1473 2.223803 TCCTTCCAGAGTCCAGTCTC 57.776 55.000 0.00 0.00 34.96 3.36
864 1474 1.190643 CCTTCCAGAGTCCAGTCTCC 58.809 60.000 0.00 0.00 35.28 3.71
865 1475 1.551099 CCTTCCAGAGTCCAGTCTCCA 60.551 57.143 0.00 0.00 35.28 3.86
867 1477 1.076438 TCCAGAGTCCAGTCTCCAGA 58.924 55.000 0.00 0.00 35.28 3.86
868 1478 1.181786 CCAGAGTCCAGTCTCCAGAC 58.818 60.000 0.00 0.00 45.08 3.51
877 1487 3.180984 GTCTCCAGACGACACACAC 57.819 57.895 0.00 0.00 35.12 3.82
914 1524 4.974438 AGGCGGAGGTGTTCCCCA 62.974 66.667 0.00 0.00 43.63 4.96
915 1525 3.728373 GGCGGAGGTGTTCCCCAT 61.728 66.667 0.00 0.00 43.63 4.00
917 1527 2.590092 CGGAGGTGTTCCCCATCC 59.410 66.667 0.00 0.00 43.63 3.51
918 1528 1.995626 CGGAGGTGTTCCCCATCCT 60.996 63.158 0.00 0.00 43.63 3.24
942 1564 2.217745 CGCCTTATCCCTCTCCCCC 61.218 68.421 0.00 0.00 0.00 5.40
1102 1975 1.672854 CGTCCGAGCCCAAGGTATGA 61.673 60.000 0.00 0.00 0.00 2.15
1108 1981 0.988678 AGCCCAAGGTATGAGTCCCC 60.989 60.000 0.00 0.00 0.00 4.81
1113 1986 1.486726 CAAGGTATGAGTCCCCTGTCC 59.513 57.143 0.00 0.00 0.00 4.02
1140 2033 5.635278 ATCCAAATCCAAATCCAAATCCC 57.365 39.130 0.00 0.00 0.00 3.85
1144 2037 1.864669 TCCAAATCCAAATCCCCTGC 58.135 50.000 0.00 0.00 0.00 4.85
1157 2060 2.738743 TCCCCTGCATCTGAAAAATCC 58.261 47.619 0.00 0.00 0.00 3.01
1173 2076 6.782000 TGAAAAATCCATTCTTCCTTCCTTGA 59.218 34.615 0.00 0.00 0.00 3.02
1238 2147 1.877367 GTCGTCGGAGCAGAAGTCT 59.123 57.895 0.00 0.00 0.00 3.24
1350 2259 3.281787 TCCCGACCTCCCTCCCTT 61.282 66.667 0.00 0.00 0.00 3.95
1351 2260 2.285442 CCCGACCTCCCTCCCTTT 60.285 66.667 0.00 0.00 0.00 3.11
1352 2261 2.368011 CCCGACCTCCCTCCCTTTC 61.368 68.421 0.00 0.00 0.00 2.62
1354 2263 1.306226 CGACCTCCCTCCCTTTCCT 60.306 63.158 0.00 0.00 0.00 3.36
1355 2264 0.032416 CGACCTCCCTCCCTTTCCTA 60.032 60.000 0.00 0.00 0.00 2.94
1356 2265 1.498264 GACCTCCCTCCCTTTCCTAC 58.502 60.000 0.00 0.00 0.00 3.18
1359 2268 0.694783 CTCCCTCCCTTTCCTACCCC 60.695 65.000 0.00 0.00 0.00 4.95
1361 2270 0.328548 CCCTCCCTTTCCTACCCCAT 60.329 60.000 0.00 0.00 0.00 4.00
1362 2271 1.141185 CCTCCCTTTCCTACCCCATC 58.859 60.000 0.00 0.00 0.00 3.51
1363 2272 1.345526 CCTCCCTTTCCTACCCCATCT 60.346 57.143 0.00 0.00 0.00 2.90
1364 2273 2.050918 CTCCCTTTCCTACCCCATCTC 58.949 57.143 0.00 0.00 0.00 2.75
1366 2275 2.021042 TCCCTTTCCTACCCCATCTCAT 60.021 50.000 0.00 0.00 0.00 2.90
1367 2276 2.373502 CCCTTTCCTACCCCATCTCATC 59.626 54.545 0.00 0.00 0.00 2.92
1368 2277 3.048600 CCTTTCCTACCCCATCTCATCA 58.951 50.000 0.00 0.00 0.00 3.07
1369 2278 3.654806 CCTTTCCTACCCCATCTCATCAT 59.345 47.826 0.00 0.00 0.00 2.45
1372 2281 3.251484 TCCTACCCCATCTCATCATTCC 58.749 50.000 0.00 0.00 0.00 3.01
1373 2282 2.027745 CCTACCCCATCTCATCATTCCG 60.028 54.545 0.00 0.00 0.00 4.30
1374 2283 0.767375 ACCCCATCTCATCATTCCGG 59.233 55.000 0.00 0.00 0.00 5.14
1375 2284 0.607489 CCCCATCTCATCATTCCGGC 60.607 60.000 0.00 0.00 0.00 6.13
1376 2285 0.399454 CCCATCTCATCATTCCGGCT 59.601 55.000 0.00 0.00 0.00 5.52
1377 2286 1.610102 CCCATCTCATCATTCCGGCTC 60.610 57.143 0.00 0.00 0.00 4.70
1378 2287 1.610102 CCATCTCATCATTCCGGCTCC 60.610 57.143 0.00 0.00 0.00 4.70
1379 2288 1.347050 CATCTCATCATTCCGGCTCCT 59.653 52.381 0.00 0.00 0.00 3.69
1380 2289 2.381752 TCTCATCATTCCGGCTCCTA 57.618 50.000 0.00 0.00 0.00 2.94
1381 2290 2.242926 TCTCATCATTCCGGCTCCTAG 58.757 52.381 0.00 0.00 0.00 3.02
1382 2291 1.967066 CTCATCATTCCGGCTCCTAGT 59.033 52.381 0.00 0.00 0.00 2.57
1383 2292 2.366916 CTCATCATTCCGGCTCCTAGTT 59.633 50.000 0.00 0.00 0.00 2.24
1384 2293 3.572642 TCATCATTCCGGCTCCTAGTTA 58.427 45.455 0.00 0.00 0.00 2.24
1385 2294 4.160329 TCATCATTCCGGCTCCTAGTTAT 58.840 43.478 0.00 0.00 0.00 1.89
1386 2295 4.593206 TCATCATTCCGGCTCCTAGTTATT 59.407 41.667 0.00 0.00 0.00 1.40
1387 2296 4.336889 TCATTCCGGCTCCTAGTTATTG 57.663 45.455 0.00 0.00 0.00 1.90
1388 2297 3.964688 TCATTCCGGCTCCTAGTTATTGA 59.035 43.478 0.00 0.00 0.00 2.57
1389 2298 4.039245 TCATTCCGGCTCCTAGTTATTGAG 59.961 45.833 0.00 0.00 0.00 3.02
1390 2299 3.028094 TCCGGCTCCTAGTTATTGAGT 57.972 47.619 0.00 0.00 0.00 3.41
1391 2300 3.371965 TCCGGCTCCTAGTTATTGAGTT 58.628 45.455 0.00 0.00 0.00 3.01
1392 2301 3.132289 TCCGGCTCCTAGTTATTGAGTTG 59.868 47.826 0.00 0.00 0.00 3.16
1393 2302 2.866762 CGGCTCCTAGTTATTGAGTTGC 59.133 50.000 0.00 0.00 0.00 4.17
1394 2303 3.430929 CGGCTCCTAGTTATTGAGTTGCT 60.431 47.826 0.00 0.00 0.00 3.91
1395 2304 3.873952 GGCTCCTAGTTATTGAGTTGCTG 59.126 47.826 0.00 0.00 0.00 4.41
1396 2305 3.311048 GCTCCTAGTTATTGAGTTGCTGC 59.689 47.826 0.00 0.00 0.00 5.25
1400 2309 2.350522 AGTTATTGAGTTGCTGCCTCG 58.649 47.619 0.00 0.00 0.00 4.63
1402 2311 2.939103 GTTATTGAGTTGCTGCCTCGAT 59.061 45.455 11.70 11.70 37.01 3.59
1404 2313 1.159285 TTGAGTTGCTGCCTCGATTG 58.841 50.000 0.00 0.00 0.00 2.67
1406 2315 0.674895 GAGTTGCTGCCTCGATTGGT 60.675 55.000 0.00 0.00 0.00 3.67
1414 2323 1.277842 TGCCTCGATTGGTAGCTTTGA 59.722 47.619 0.00 0.00 0.00 2.69
1419 2328 4.818546 CCTCGATTGGTAGCTTTGATTGAT 59.181 41.667 0.00 0.00 0.00 2.57
1423 2332 5.973565 CGATTGGTAGCTTTGATTGATTTCC 59.026 40.000 0.00 0.00 0.00 3.13
1426 2335 3.066760 GGTAGCTTTGATTGATTTCCCCG 59.933 47.826 0.00 0.00 0.00 5.73
1428 2337 1.204467 GCTTTGATTGATTTCCCCGCA 59.796 47.619 0.00 0.00 0.00 5.69
1429 2338 2.879826 CTTTGATTGATTTCCCCGCAC 58.120 47.619 0.00 0.00 0.00 5.34
1431 2340 0.038890 TGATTGATTTCCCCGCACCA 59.961 50.000 0.00 0.00 0.00 4.17
1432 2341 1.341877 TGATTGATTTCCCCGCACCAT 60.342 47.619 0.00 0.00 0.00 3.55
1433 2342 2.092158 TGATTGATTTCCCCGCACCATA 60.092 45.455 0.00 0.00 0.00 2.74
1434 2343 2.746279 TTGATTTCCCCGCACCATAT 57.254 45.000 0.00 0.00 0.00 1.78
1435 2344 2.270352 TGATTTCCCCGCACCATATC 57.730 50.000 0.00 0.00 0.00 1.63
1436 2345 1.492599 TGATTTCCCCGCACCATATCA 59.507 47.619 0.00 0.00 0.00 2.15
1437 2346 2.154462 GATTTCCCCGCACCATATCAG 58.846 52.381 0.00 0.00 0.00 2.90
1438 2347 1.208706 TTTCCCCGCACCATATCAGA 58.791 50.000 0.00 0.00 0.00 3.27
1439 2348 0.468226 TTCCCCGCACCATATCAGAC 59.532 55.000 0.00 0.00 0.00 3.51
1442 2351 0.397941 CCCGCACCATATCAGACCAT 59.602 55.000 0.00 0.00 0.00 3.55
1443 2352 1.516161 CCGCACCATATCAGACCATG 58.484 55.000 0.00 0.00 0.00 3.66
1445 2354 1.541889 CGCACCATATCAGACCATGCT 60.542 52.381 0.00 0.00 0.00 3.79
1446 2355 1.878088 GCACCATATCAGACCATGCTG 59.122 52.381 0.00 0.00 37.24 4.41
1448 2357 3.548770 CACCATATCAGACCATGCTGTT 58.451 45.455 0.98 0.00 37.20 3.16
1450 2359 2.882761 CCATATCAGACCATGCTGTTGG 59.117 50.000 0.98 0.14 42.82 3.77
1457 2366 1.588082 CCATGCTGTTGGTCTTGGC 59.412 57.895 0.00 0.00 31.74 4.52
1458 2367 1.588082 CATGCTGTTGGTCTTGGCC 59.412 57.895 0.00 0.00 0.00 5.36
1459 2368 1.607467 ATGCTGTTGGTCTTGGCCC 60.607 57.895 0.00 0.00 0.00 5.80
1460 2369 2.203480 GCTGTTGGTCTTGGCCCA 60.203 61.111 0.00 0.00 0.00 5.36
1464 2382 1.693606 CTGTTGGTCTTGGCCCAAAAT 59.306 47.619 0.00 0.00 43.30 1.82
1475 2393 2.566724 TGGCCCAAAATCAATCAGAACC 59.433 45.455 0.00 0.00 0.00 3.62
1476 2394 2.417243 GGCCCAAAATCAATCAGAACCG 60.417 50.000 0.00 0.00 0.00 4.44
1477 2395 2.879826 CCCAAAATCAATCAGAACCGC 58.120 47.619 0.00 0.00 0.00 5.68
1478 2396 2.230992 CCCAAAATCAATCAGAACCGCA 59.769 45.455 0.00 0.00 0.00 5.69
1479 2397 3.244976 CCAAAATCAATCAGAACCGCAC 58.755 45.455 0.00 0.00 0.00 5.34
1482 2400 3.340814 AATCAATCAGAACCGCACTCT 57.659 42.857 0.00 0.00 0.00 3.24
1483 2401 2.084610 TCAATCAGAACCGCACTCTG 57.915 50.000 1.21 1.21 41.47 3.35
1484 2402 0.445436 CAATCAGAACCGCACTCTGC 59.555 55.000 2.55 0.00 40.18 4.26
1546 2487 2.449525 CGTTCATGGCGGTGGTACG 61.450 63.158 0.00 0.00 0.00 3.67
1569 2510 7.633621 ACGCATCAACAGACTTCATTTATATG 58.366 34.615 0.00 0.00 0.00 1.78
1579 2532 7.117523 CAGACTTCATTTATATGCCTGCTCTAC 59.882 40.741 0.00 0.00 0.00 2.59
1604 2561 2.012673 GTGATGTGCCTCCTTGATGAC 58.987 52.381 0.00 0.00 0.00 3.06
1606 2563 2.306805 TGATGTGCCTCCTTGATGACTT 59.693 45.455 0.00 0.00 0.00 3.01
1644 2611 2.071778 AGGCCAAACAGTGTTCATGT 57.928 45.000 9.40 0.00 0.00 3.21
1645 2612 2.387757 AGGCCAAACAGTGTTCATGTT 58.612 42.857 9.40 0.00 42.55 2.71
1646 2613 2.362077 AGGCCAAACAGTGTTCATGTTC 59.638 45.455 9.40 0.02 39.91 3.18
1647 2614 2.100584 GGCCAAACAGTGTTCATGTTCA 59.899 45.455 9.40 0.00 39.91 3.18
1648 2615 3.243839 GGCCAAACAGTGTTCATGTTCAT 60.244 43.478 9.40 0.00 39.91 2.57
1649 2616 3.983344 GCCAAACAGTGTTCATGTTCATC 59.017 43.478 9.40 0.00 39.91 2.92
1700 2667 4.963878 GGCCACACCGATCATCTT 57.036 55.556 0.00 0.00 0.00 2.40
1728 2722 4.394439 TGTTAACTGAAAGCAAAACCCC 57.606 40.909 7.22 0.00 37.60 4.95
1732 2726 4.568072 AACTGAAAGCAAAACCCCTTTT 57.432 36.364 0.00 0.00 37.60 2.27
1733 2727 4.568072 ACTGAAAGCAAAACCCCTTTTT 57.432 36.364 0.00 0.00 37.60 1.94
1802 2796 1.755380 CCCCTGCAGGTAGTACAGTAC 59.245 57.143 30.63 2.05 0.00 2.73
1825 2819 6.587273 ACTTAATCATCTCCAGCCTTCTTAC 58.413 40.000 0.00 0.00 0.00 2.34
1826 2820 3.742433 ATCATCTCCAGCCTTCTTACG 57.258 47.619 0.00 0.00 0.00 3.18
1831 2825 0.389426 TCCAGCCTTCTTACGAACGC 60.389 55.000 0.00 0.00 33.21 4.84
1870 2864 7.269316 TGTTTCTGACAGACATGTGTTACTTA 58.731 34.615 1.15 0.00 40.68 2.24
1897 2891 0.895559 GCCTGAACCTGTCCCTTTGG 60.896 60.000 0.00 0.00 0.00 3.28
1898 2892 0.251341 CCTGAACCTGTCCCTTTGGG 60.251 60.000 0.00 0.00 46.11 4.12
1996 2997 1.294780 CGAGAAAGGTGAGGCTGCT 59.705 57.895 0.00 0.00 0.00 4.24
2029 3031 2.932614 CTCCGCCTTCTGTTATCACTTG 59.067 50.000 0.00 0.00 0.00 3.16
2040 3042 4.178540 TGTTATCACTTGCTTACTACGGC 58.821 43.478 0.00 0.00 0.00 5.68
2041 3043 1.922570 ATCACTTGCTTACTACGGCG 58.077 50.000 4.80 4.80 0.00 6.46
2103 3106 6.317140 TCTCATCATGTTTAAATGCCAGAGAC 59.683 38.462 0.00 0.00 30.53 3.36
2104 3107 5.945191 TCATCATGTTTAAATGCCAGAGACA 59.055 36.000 0.00 0.00 0.00 3.41
2111 3114 2.338577 AATGCCAGAGACATACCAGC 57.661 50.000 0.00 0.00 0.00 4.85
2115 3118 1.443407 CAGAGACATACCAGCGGGG 59.557 63.158 8.08 1.20 44.81 5.73
2130 3133 2.434774 GGGTTCGGTTTCAGCCCT 59.565 61.111 0.00 0.00 36.49 5.19
2189 3202 1.743772 GCTGCGTACCCATCTCACATT 60.744 52.381 0.00 0.00 0.00 2.71
2191 3204 3.792401 CTGCGTACCCATCTCACATTAA 58.208 45.455 0.00 0.00 0.00 1.40
2192 3205 3.527533 TGCGTACCCATCTCACATTAAC 58.472 45.455 0.00 0.00 0.00 2.01
2193 3206 2.870411 GCGTACCCATCTCACATTAACC 59.130 50.000 0.00 0.00 0.00 2.85
2194 3207 3.120792 CGTACCCATCTCACATTAACCG 58.879 50.000 0.00 0.00 0.00 4.44
2195 3208 3.429822 CGTACCCATCTCACATTAACCGT 60.430 47.826 0.00 0.00 0.00 4.83
2196 3209 2.985896 ACCCATCTCACATTAACCGTG 58.014 47.619 1.23 1.23 35.63 4.94
2197 3210 2.569853 ACCCATCTCACATTAACCGTGA 59.430 45.455 8.76 8.76 41.00 4.35
2245 3260 0.742281 ATGCGTGTCTCCTGTGATGC 60.742 55.000 0.00 0.00 0.00 3.91
2267 3282 6.741109 TGCTGGCATCTATTGTTGATAAATG 58.259 36.000 0.00 0.00 0.00 2.32
2309 3327 0.736053 AACAACCGTGACACGCAATT 59.264 45.000 22.46 12.68 40.91 2.32
2343 3361 7.754851 TTTCAACTGGAAAGGGATTTACTAC 57.245 36.000 0.00 0.00 40.51 2.73
2355 3373 6.543735 AGGGATTTACTACAAGTGAAAGCTT 58.456 36.000 0.00 0.00 27.31 3.74
2392 3492 1.346395 TCTTCACCCACTTGTGCGTAT 59.654 47.619 0.00 0.00 36.17 3.06
2583 3694 5.232838 GCAATCTGTTTCTTCAACTTTGTGG 59.767 40.000 0.00 0.00 36.21 4.17
2682 3794 5.622233 GCATGCCCTCTTTTTCTTTTCGTAT 60.622 40.000 6.36 0.00 0.00 3.06
2685 3797 4.621460 GCCCTCTTTTTCTTTTCGTATTGC 59.379 41.667 0.00 0.00 0.00 3.56
2689 3801 5.445845 TCTTTTTCTTTTCGTATTGCCGAC 58.554 37.500 0.00 0.00 36.42 4.79
2712 3829 4.039730 CACCACAGCTTAGATACTGCCTAT 59.960 45.833 0.00 0.00 37.42 2.57
2713 3830 4.656112 ACCACAGCTTAGATACTGCCTATT 59.344 41.667 0.00 0.00 37.42 1.73
2718 3846 7.758980 CACAGCTTAGATACTGCCTATTATCTG 59.241 40.741 2.08 0.00 36.06 2.90
2721 3849 8.527810 AGCTTAGATACTGCCTATTATCTGTTC 58.472 37.037 2.08 0.00 36.06 3.18
2724 3852 7.863901 AGATACTGCCTATTATCTGTTCCTT 57.136 36.000 0.00 0.00 34.40 3.36
2731 3859 4.680110 CCTATTATCTGTTCCTTACACGCG 59.320 45.833 3.53 3.53 32.10 6.01
2732 3860 1.917273 TATCTGTTCCTTACACGCGC 58.083 50.000 5.73 0.00 32.10 6.86
2800 3928 3.366679 CGACGTCCAAGTACTAACCACAT 60.367 47.826 10.58 0.00 0.00 3.21
2806 3934 6.461640 GTCCAAGTACTAACCACATAACACT 58.538 40.000 0.00 0.00 0.00 3.55
3106 4256 2.436109 GGGAGGGAAGCAACAGCA 59.564 61.111 0.00 0.00 0.00 4.41
3127 4277 2.755064 CGCCATTGCCCATGTCCA 60.755 61.111 0.00 0.00 0.00 4.02
3221 4397 7.061789 GCTTTTGCAACCACACTTGTTATATAC 59.938 37.037 0.00 0.00 46.58 1.47
3227 4403 5.666462 ACCACACTTGTTATATACATGCGA 58.334 37.500 0.00 0.00 36.44 5.10
3228 4404 6.288294 ACCACACTTGTTATATACATGCGAT 58.712 36.000 0.00 0.00 36.44 4.58
3231 4407 7.003648 CACACTTGTTATATACATGCGATTCG 58.996 38.462 0.62 0.62 36.44 3.34
3232 4408 6.009474 CACTTGTTATATACATGCGATTCGC 58.991 40.000 23.58 23.58 42.30 4.70
3233 4409 5.120208 ACTTGTTATATACATGCGATTCGCC 59.880 40.000 26.71 10.60 41.69 5.54
3234 4410 5.234752 TTGTTATATACATGCGATTCGCCT 58.765 37.500 26.71 15.60 41.69 5.52
3235 4411 5.347635 TTGTTATATACATGCGATTCGCCTC 59.652 40.000 26.71 4.77 41.69 4.70
3236 4412 7.556006 TTGTTATATACATGCGATTCGCCTCC 61.556 42.308 26.71 1.54 41.69 4.30
3237 4413 9.821062 TTGTTATATACATGCGATTCGCCTCCA 62.821 40.741 26.71 9.85 41.69 3.86
3242 4418 2.180769 CGATTCGCCTCCACGTGA 59.819 61.111 19.30 2.03 0.00 4.35
3243 4419 2.158959 CGATTCGCCTCCACGTGAC 61.159 63.158 19.30 2.31 0.00 3.67
3244 4420 2.126071 ATTCGCCTCCACGTGACG 60.126 61.111 19.30 14.84 0.00 4.35
3245 4421 2.814183 GATTCGCCTCCACGTGACGT 62.814 60.000 19.30 4.10 42.36 4.34
3246 4422 2.814183 ATTCGCCTCCACGTGACGTC 62.814 60.000 19.30 9.11 38.32 4.34
3248 4424 4.034258 GCCTCCACGTGACGTCGA 62.034 66.667 19.30 6.43 38.32 4.20
3249 4425 2.875485 CCTCCACGTGACGTCGAT 59.125 61.111 19.30 0.00 38.32 3.59
3250 4426 1.514228 CCTCCACGTGACGTCGATG 60.514 63.158 19.30 0.00 38.32 3.84
3251 4427 1.500396 CTCCACGTGACGTCGATGA 59.500 57.895 19.30 1.75 38.32 2.92
3252 4428 0.098905 CTCCACGTGACGTCGATGAT 59.901 55.000 19.30 0.00 38.32 2.45
3264 4440 2.681706 GTCGATGATGATTCGCTCCAT 58.318 47.619 0.00 0.00 36.56 3.41
3269 4445 2.554142 TGATGATTCGCTCCATGTGAC 58.446 47.619 0.00 0.00 34.56 3.67
3275 4451 1.226688 CGCTCCATGTGACGTCGAT 60.227 57.895 11.62 2.34 0.00 3.59
3278 4454 1.536922 GCTCCATGTGACGTCGATGAT 60.537 52.381 22.55 5.93 0.00 2.45
3279 4455 2.287608 GCTCCATGTGACGTCGATGATA 60.288 50.000 22.55 12.62 0.00 2.15
3298 4474 2.315925 ATGATGACCGAGCGTTTGAT 57.684 45.000 0.00 0.00 0.00 2.57
3346 4522 5.106317 GCTCATTTTCCAGTTAACCGATCAA 60.106 40.000 0.88 0.00 0.00 2.57
3353 4533 4.525487 TCCAGTTAACCGATCAACAGTACT 59.475 41.667 0.88 0.00 0.00 2.73
3396 4579 5.626543 GTGTTGTTTGTTATGCATCTCTGTG 59.373 40.000 0.19 0.00 0.00 3.66
3419 4602 3.157932 GCTTTTGCAACCACACTGTTA 57.842 42.857 0.00 0.00 46.58 2.41
3420 4603 3.716601 GCTTTTGCAACCACACTGTTAT 58.283 40.909 0.00 0.00 46.58 1.89
3421 4604 4.865776 GCTTTTGCAACCACACTGTTATA 58.134 39.130 0.00 0.00 46.58 0.98
3423 4606 6.616947 GCTTTTGCAACCACACTGTTATATA 58.383 36.000 0.00 0.00 46.58 0.86
3424 4607 7.257722 GCTTTTGCAACCACACTGTTATATAT 58.742 34.615 0.00 0.00 46.58 0.86
3426 4609 6.935741 TTGCAACCACACTGTTATATATCC 57.064 37.500 0.00 0.00 0.00 2.59
3427 4610 5.995446 TGCAACCACACTGTTATATATCCA 58.005 37.500 0.00 0.00 0.00 3.41
3428 4611 6.600388 TGCAACCACACTGTTATATATCCAT 58.400 36.000 0.00 0.00 0.00 3.41
3486 4846 0.976590 GGAACGGAGGAACCCTAGCT 60.977 60.000 0.00 0.00 31.76 3.32
3488 4848 1.682323 GAACGGAGGAACCCTAGCTAG 59.318 57.143 14.20 14.20 31.76 3.42
3489 4849 0.756070 ACGGAGGAACCCTAGCTAGC 60.756 60.000 15.74 6.62 31.76 3.42
3490 4850 1.465200 CGGAGGAACCCTAGCTAGCC 61.465 65.000 15.74 10.85 31.76 3.93
3491 4851 0.398664 GGAGGAACCCTAGCTAGCCA 60.399 60.000 15.74 0.00 31.76 4.75
3492 4852 1.044611 GAGGAACCCTAGCTAGCCAG 58.955 60.000 15.74 7.24 31.76 4.85
3493 4853 0.399233 AGGAACCCTAGCTAGCCAGG 60.399 60.000 21.15 21.15 28.47 4.45
3494 4854 1.448069 GAACCCTAGCTAGCCAGGC 59.552 63.158 22.49 1.84 0.00 4.85
3495 4855 1.306997 AACCCTAGCTAGCCAGGCA 60.307 57.895 22.49 0.00 0.00 4.75
3496 4856 0.914417 AACCCTAGCTAGCCAGGCAA 60.914 55.000 22.49 0.00 0.00 4.52
3497 4857 0.695803 ACCCTAGCTAGCCAGGCAAT 60.696 55.000 22.49 8.18 0.00 3.56
3498 4858 0.475906 CCCTAGCTAGCCAGGCAATT 59.524 55.000 22.49 0.00 0.00 2.32
3499 4859 1.699634 CCCTAGCTAGCCAGGCAATTA 59.300 52.381 22.49 0.00 0.00 1.40
3500 4860 2.551071 CCCTAGCTAGCCAGGCAATTAC 60.551 54.545 22.49 0.00 0.00 1.89
3501 4861 2.551071 CCTAGCTAGCCAGGCAATTACC 60.551 54.545 16.59 0.00 0.00 2.85
3502 4862 0.918983 AGCTAGCCAGGCAATTACCA 59.081 50.000 15.80 0.00 0.00 3.25
3553 4913 0.960861 GGAGTGGTTGCAGTTAGGCC 60.961 60.000 0.00 0.00 0.00 5.19
3554 4914 0.250727 GAGTGGTTGCAGTTAGGCCA 60.251 55.000 5.01 0.00 0.00 5.36
3595 4955 5.287674 AGTCCATCACTCACTATCAATGG 57.712 43.478 0.00 0.00 35.95 3.16
3603 4963 3.713764 ACTCACTATCAATGGAAGGGGAG 59.286 47.826 4.08 4.08 36.12 4.30
3606 4966 1.074566 CTATCAATGGAAGGGGAGGGC 59.925 57.143 0.00 0.00 0.00 5.19
3607 4967 0.925720 ATCAATGGAAGGGGAGGGCA 60.926 55.000 0.00 0.00 0.00 5.36
3608 4968 1.380380 CAATGGAAGGGGAGGGCAC 60.380 63.158 0.00 0.00 0.00 5.01
3623 4983 1.265236 GGCACCCACCAATTCAATCA 58.735 50.000 0.00 0.00 0.00 2.57
3624 4984 1.622811 GGCACCCACCAATTCAATCAA 59.377 47.619 0.00 0.00 0.00 2.57
3625 4985 2.236893 GGCACCCACCAATTCAATCAAT 59.763 45.455 0.00 0.00 0.00 2.57
3626 4986 3.524541 GCACCCACCAATTCAATCAATC 58.475 45.455 0.00 0.00 0.00 2.67
3627 4987 3.055963 GCACCCACCAATTCAATCAATCA 60.056 43.478 0.00 0.00 0.00 2.57
3628 4988 4.563168 GCACCCACCAATTCAATCAATCAA 60.563 41.667 0.00 0.00 0.00 2.57
3629 4989 5.172934 CACCCACCAATTCAATCAATCAAG 58.827 41.667 0.00 0.00 0.00 3.02
3671 5031 2.006888 GTGTGTGTGTGTAGCTTGTGT 58.993 47.619 0.00 0.00 0.00 3.72
3680 5040 1.202687 TGTAGCTTGTGTGCTGCTTCT 60.203 47.619 0.00 0.00 44.19 2.85
3683 5043 0.664761 GCTTGTGTGCTGCTTCTTCA 59.335 50.000 0.00 0.00 0.00 3.02
3685 5045 2.667724 GCTTGTGTGCTGCTTCTTCATC 60.668 50.000 0.00 0.00 0.00 2.92
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
97 98 4.299316 GCGACAATGCGGCGGATC 62.299 66.667 15.85 1.83 0.00 3.36
103 104 4.444024 CACACGGCGACAATGCGG 62.444 66.667 16.62 0.00 40.62 5.69
104 105 3.711842 ACACACGGCGACAATGCG 61.712 61.111 16.62 0.00 35.06 4.73
105 106 1.911293 ATCACACACGGCGACAATGC 61.911 55.000 16.62 0.00 0.00 3.56
106 107 1.355005 TATCACACACGGCGACAATG 58.645 50.000 16.62 3.21 0.00 2.82
107 108 2.309528 ATATCACACACGGCGACAAT 57.690 45.000 16.62 0.49 0.00 2.71
227 252 1.179814 ACACTTCTTCCGACTCCGCT 61.180 55.000 0.00 0.00 0.00 5.52
228 253 0.524862 TACACTTCTTCCGACTCCGC 59.475 55.000 0.00 0.00 0.00 5.54
234 259 4.994852 CACAAGGAATTACACTTCTTCCGA 59.005 41.667 0.00 0.00 42.65 4.55
237 263 9.612620 CATTTACACAAGGAATTACACTTCTTC 57.387 33.333 0.00 0.00 0.00 2.87
239 265 8.918202 TCATTTACACAAGGAATTACACTTCT 57.082 30.769 0.00 0.00 0.00 2.85
252 278 8.730680 AGCTAACCAAACTATCATTTACACAAG 58.269 33.333 0.00 0.00 0.00 3.16
290 316 3.018856 TGTCAGGCATTGTGAATCCATC 58.981 45.455 0.00 0.00 0.00 3.51
296 322 3.890756 ACAGAATTGTCAGGCATTGTGAA 59.109 39.130 1.12 0.00 29.46 3.18
301 327 6.658816 TGTAACATACAGAATTGTCAGGCATT 59.341 34.615 0.00 0.00 38.76 3.56
304 330 6.094048 ACATGTAACATACAGAATTGTCAGGC 59.906 38.462 0.00 0.00 42.77 4.85
377 403 3.320541 CCTCTCTGCTCTACCAATACCTG 59.679 52.174 0.00 0.00 0.00 4.00
386 412 0.553819 TCCCCTCCTCTCTGCTCTAC 59.446 60.000 0.00 0.00 0.00 2.59
447 498 3.935172 ACTGGGATTTTTCTGGGGAAAA 58.065 40.909 0.55 0.55 45.97 2.29
451 502 4.249638 TCATACTGGGATTTTTCTGGGG 57.750 45.455 0.00 0.00 0.00 4.96
455 506 6.604795 CAGGTCATTCATACTGGGATTTTTCT 59.395 38.462 0.00 0.00 0.00 2.52
461 512 4.662179 ACATCAGGTCATTCATACTGGGAT 59.338 41.667 0.00 0.00 0.00 3.85
468 527 4.492494 ACAGCACATCAGGTCATTCATA 57.508 40.909 0.00 0.00 0.00 2.15
477 536 2.105006 ACAAGCTACAGCACATCAGG 57.895 50.000 3.70 0.00 45.16 3.86
478 537 3.854666 AGTACAAGCTACAGCACATCAG 58.145 45.455 3.70 0.00 45.16 2.90
479 538 3.961480 AGTACAAGCTACAGCACATCA 57.039 42.857 3.70 0.00 45.16 3.07
480 539 3.791887 CGTAGTACAAGCTACAGCACATC 59.208 47.826 3.70 0.00 45.16 3.06
481 540 3.192844 ACGTAGTACAAGCTACAGCACAT 59.807 43.478 3.70 0.00 41.94 3.21
482 541 2.555325 ACGTAGTACAAGCTACAGCACA 59.445 45.455 3.70 0.00 41.94 4.57
483 542 3.213249 ACGTAGTACAAGCTACAGCAC 57.787 47.619 3.70 0.00 41.94 4.40
484 543 5.571784 ATTACGTAGTACAAGCTACAGCA 57.428 39.130 3.70 0.00 45.76 4.41
485 544 9.837525 ATTATATTACGTAGTACAAGCTACAGC 57.162 33.333 0.00 0.00 45.76 4.40
508 810 7.361713 GCAACCAACAAGATGCTAGTTGTATTA 60.362 37.037 0.00 0.00 40.64 0.98
514 816 3.254166 CAGCAACCAACAAGATGCTAGTT 59.746 43.478 0.00 0.00 46.75 2.24
517 819 2.813754 GACAGCAACCAACAAGATGCTA 59.186 45.455 0.00 0.00 46.75 3.49
520 822 2.227388 GGAGACAGCAACCAACAAGATG 59.773 50.000 0.00 0.00 0.00 2.90
530 832 3.149196 TGATCAAAAGGGAGACAGCAAC 58.851 45.455 0.00 0.00 0.00 4.17
534 836 6.770746 ATGAAATGATCAAAAGGGAGACAG 57.229 37.500 0.00 0.00 42.54 3.51
538 840 6.927381 GCCAATATGAAATGATCAAAAGGGAG 59.073 38.462 0.00 0.00 42.54 4.30
541 843 9.938280 ATATGCCAATATGAAATGATCAAAAGG 57.062 29.630 0.00 0.00 42.54 3.11
557 865 7.772757 TCGCATCCAAATATACATATGCCAATA 59.227 33.333 1.58 0.00 37.10 1.90
558 866 6.602803 TCGCATCCAAATATACATATGCCAAT 59.397 34.615 1.58 0.00 37.10 3.16
582 930 9.294614 AGGATAATCAAAAGGATAATCAAGCTC 57.705 33.333 0.00 0.00 34.28 4.09
589 937 7.012607 CCCCACAGGATAATCAAAAGGATAAT 58.987 38.462 0.00 0.00 38.24 1.28
590 938 6.372931 CCCCACAGGATAATCAAAAGGATAA 58.627 40.000 0.00 0.00 38.24 1.75
594 942 3.299503 CCCCCACAGGATAATCAAAAGG 58.700 50.000 0.00 0.00 38.24 3.11
595 943 2.695147 GCCCCCACAGGATAATCAAAAG 59.305 50.000 0.00 0.00 38.24 2.27
596 944 2.314549 AGCCCCCACAGGATAATCAAAA 59.685 45.455 0.00 0.00 38.24 2.44
607 1107 1.856629 ATGATCAAAAGCCCCCACAG 58.143 50.000 0.00 0.00 0.00 3.66
610 1110 2.899975 TGAAATGATCAAAAGCCCCCA 58.100 42.857 0.00 0.00 34.30 4.96
611 1111 5.813513 ATATGAAATGATCAAAAGCCCCC 57.186 39.130 0.00 0.00 42.54 5.40
612 1112 5.922544 CGAATATGAAATGATCAAAAGCCCC 59.077 40.000 0.00 0.00 42.54 5.80
613 1113 5.403466 GCGAATATGAAATGATCAAAAGCCC 59.597 40.000 0.00 0.00 42.54 5.19
614 1114 5.978919 TGCGAATATGAAATGATCAAAAGCC 59.021 36.000 0.00 0.00 42.54 4.35
617 1117 9.131416 GCATATGCGAATATGAAATGATCAAAA 57.869 29.630 25.01 0.00 42.54 2.44
618 1118 8.298140 TGCATATGCGAATATGAAATGATCAAA 58.702 29.630 25.01 0.00 45.83 2.69
620 1120 7.380431 TGCATATGCGAATATGAAATGATCA 57.620 32.000 25.01 9.93 45.83 2.92
624 1124 8.964150 CCAATATGCATATGCGAATATGAAATG 58.036 33.333 25.01 15.17 45.83 2.32
625 1125 8.139350 CCCAATATGCATATGCGAATATGAAAT 58.861 33.333 25.01 18.48 45.83 2.17
627 1127 6.459985 GCCCAATATGCATATGCGAATATGAA 60.460 38.462 25.01 16.63 45.83 2.57
629 1129 5.217393 GCCCAATATGCATATGCGAATATG 58.783 41.667 19.77 17.83 45.83 1.78
630 1130 4.888823 TGCCCAATATGCATATGCGAATAT 59.111 37.500 19.77 16.76 45.83 1.28
632 1132 3.090790 TGCCCAATATGCATATGCGAAT 58.909 40.909 19.77 14.85 45.83 3.34
634 1134 2.197283 TGCCCAATATGCATATGCGA 57.803 45.000 19.77 13.39 45.83 5.10
641 1141 0.186630 AGAGCCATGCCCAATATGCA 59.813 50.000 0.00 0.00 43.97 3.96
643 1143 2.079158 CGTAGAGCCATGCCCAATATG 58.921 52.381 0.00 0.00 0.00 1.78
644 1144 1.699634 ACGTAGAGCCATGCCCAATAT 59.300 47.619 0.00 0.00 0.00 1.28
648 1251 1.128200 AATACGTAGAGCCATGCCCA 58.872 50.000 0.08 0.00 0.00 5.36
649 1252 2.143925 GAAATACGTAGAGCCATGCCC 58.856 52.381 0.08 0.00 0.00 5.36
662 1265 6.258727 ACAGGATAATCAAGCTGTGAAATACG 59.741 38.462 0.00 0.00 40.50 3.06
663 1266 7.559590 ACAGGATAATCAAGCTGTGAAATAC 57.440 36.000 0.00 0.00 40.50 1.89
684 1291 2.314323 AACCAAAAAGGCAGCAACAG 57.686 45.000 0.00 0.00 43.14 3.16
724 1331 3.222603 TGCAAAACTCCTCTTTTCCTCC 58.777 45.455 0.00 0.00 0.00 4.30
725 1332 4.137543 TCTGCAAAACTCCTCTTTTCCTC 58.862 43.478 0.00 0.00 0.00 3.71
727 1334 4.802999 CATCTGCAAAACTCCTCTTTTCC 58.197 43.478 0.00 0.00 0.00 3.13
766 1376 3.862267 CGCCACATGTTTTCTTGTTCAAA 59.138 39.130 0.00 0.00 36.30 2.69
767 1377 3.129462 TCGCCACATGTTTTCTTGTTCAA 59.871 39.130 0.00 0.00 36.30 2.69
768 1378 2.685388 TCGCCACATGTTTTCTTGTTCA 59.315 40.909 0.00 0.00 36.30 3.18
769 1379 3.003275 TCTCGCCACATGTTTTCTTGTTC 59.997 43.478 0.00 0.00 36.30 3.18
771 1381 2.549754 CTCTCGCCACATGTTTTCTTGT 59.450 45.455 0.00 0.00 38.46 3.16
772 1382 2.095567 CCTCTCGCCACATGTTTTCTTG 60.096 50.000 0.00 0.00 0.00 3.02
773 1383 2.154462 CCTCTCGCCACATGTTTTCTT 58.846 47.619 0.00 0.00 0.00 2.52
774 1384 1.347707 TCCTCTCGCCACATGTTTTCT 59.652 47.619 0.00 0.00 0.00 2.52
775 1385 1.734465 CTCCTCTCGCCACATGTTTTC 59.266 52.381 0.00 0.00 0.00 2.29
776 1386 1.611673 CCTCCTCTCGCCACATGTTTT 60.612 52.381 0.00 0.00 0.00 2.43
808 1418 7.932491 TCTCAATCTCAATCTCAATCTCAATCC 59.068 37.037 0.00 0.00 0.00 3.01
809 1419 8.890124 TCTCAATCTCAATCTCAATCTCAATC 57.110 34.615 0.00 0.00 0.00 2.67
810 1420 9.854668 AATCTCAATCTCAATCTCAATCTCAAT 57.145 29.630 0.00 0.00 0.00 2.57
811 1421 9.110502 CAATCTCAATCTCAATCTCAATCTCAA 57.889 33.333 0.00 0.00 0.00 3.02
812 1422 8.483758 TCAATCTCAATCTCAATCTCAATCTCA 58.516 33.333 0.00 0.00 0.00 3.27
813 1423 8.890124 TCAATCTCAATCTCAATCTCAATCTC 57.110 34.615 0.00 0.00 0.00 2.75
814 1424 8.706521 TCTCAATCTCAATCTCAATCTCAATCT 58.293 33.333 0.00 0.00 0.00 2.40
815 1425 8.890124 TCTCAATCTCAATCTCAATCTCAATC 57.110 34.615 0.00 0.00 0.00 2.67
816 1426 9.278978 CATCTCAATCTCAATCTCAATCTCAAT 57.721 33.333 0.00 0.00 0.00 2.57
817 1427 8.483758 TCATCTCAATCTCAATCTCAATCTCAA 58.516 33.333 0.00 0.00 0.00 3.02
818 1428 8.019656 TCATCTCAATCTCAATCTCAATCTCA 57.980 34.615 0.00 0.00 0.00 3.27
819 1429 9.146984 GATCATCTCAATCTCAATCTCAATCTC 57.853 37.037 0.00 0.00 0.00 2.75
820 1430 8.098286 GGATCATCTCAATCTCAATCTCAATCT 58.902 37.037 0.00 0.00 0.00 2.40
821 1431 8.098286 AGGATCATCTCAATCTCAATCTCAATC 58.902 37.037 0.00 0.00 0.00 2.67
860 1470 0.668535 CTGTGTGTGTCGTCTGGAGA 59.331 55.000 0.00 0.00 0.00 3.71
861 1471 0.668535 TCTGTGTGTGTCGTCTGGAG 59.331 55.000 0.00 0.00 0.00 3.86
862 1472 1.107945 TTCTGTGTGTGTCGTCTGGA 58.892 50.000 0.00 0.00 0.00 3.86
863 1473 1.934589 TTTCTGTGTGTGTCGTCTGG 58.065 50.000 0.00 0.00 0.00 3.86
864 1474 2.221749 CCATTTCTGTGTGTGTCGTCTG 59.778 50.000 0.00 0.00 0.00 3.51
865 1475 2.102420 TCCATTTCTGTGTGTGTCGTCT 59.898 45.455 0.00 0.00 0.00 4.18
867 1477 2.102420 TCTCCATTTCTGTGTGTGTCGT 59.898 45.455 0.00 0.00 0.00 4.34
868 1478 2.733552 CTCTCCATTTCTGTGTGTGTCG 59.266 50.000 0.00 0.00 0.00 4.35
869 1479 3.070018 CCTCTCCATTTCTGTGTGTGTC 58.930 50.000 0.00 0.00 0.00 3.67
870 1480 2.439507 ACCTCTCCATTTCTGTGTGTGT 59.560 45.455 0.00 0.00 0.00 3.72
871 1481 2.810274 CACCTCTCCATTTCTGTGTGTG 59.190 50.000 0.00 0.00 0.00 3.82
872 1482 2.439507 ACACCTCTCCATTTCTGTGTGT 59.560 45.455 0.00 0.00 35.76 3.72
873 1483 2.810274 CACACCTCTCCATTTCTGTGTG 59.190 50.000 6.23 6.23 44.95 3.82
874 1484 2.439507 ACACACCTCTCCATTTCTGTGT 59.560 45.455 0.00 0.00 37.89 3.72
875 1485 2.810274 CACACACCTCTCCATTTCTGTG 59.190 50.000 0.00 0.00 36.03 3.66
876 1486 2.705658 TCACACACCTCTCCATTTCTGT 59.294 45.455 0.00 0.00 0.00 3.41
877 1487 3.332919 CTCACACACCTCTCCATTTCTG 58.667 50.000 0.00 0.00 0.00 3.02
914 1524 1.551329 GGGATAAGGCGAGAGGAGGAT 60.551 57.143 0.00 0.00 0.00 3.24
915 1525 0.178958 GGGATAAGGCGAGAGGAGGA 60.179 60.000 0.00 0.00 0.00 3.71
917 1527 1.203001 AGAGGGATAAGGCGAGAGGAG 60.203 57.143 0.00 0.00 0.00 3.69
918 1528 0.854218 AGAGGGATAAGGCGAGAGGA 59.146 55.000 0.00 0.00 0.00 3.71
942 1564 1.208706 GAAAAGGAGGAGGAGGAGGG 58.791 60.000 0.00 0.00 0.00 4.30
1048 1676 3.596799 TCCACCCCTGGAGACGGA 61.597 66.667 0.00 0.00 42.15 4.69
1102 1975 1.619669 GATTGGGGGACAGGGGACT 60.620 63.158 0.00 0.00 46.44 3.85
1108 1981 1.006998 TGGATTTGGATTGGGGGACAG 59.993 52.381 0.00 0.00 0.00 3.51
1113 1986 3.113824 TGGATTTGGATTTGGATTGGGG 58.886 45.455 0.00 0.00 0.00 4.96
1140 2033 5.593679 AGAATGGATTTTTCAGATGCAGG 57.406 39.130 0.00 0.00 0.00 4.85
1144 2037 7.123847 AGGAAGGAAGAATGGATTTTTCAGATG 59.876 37.037 5.34 0.00 33.85 2.90
1157 2060 4.015084 AGCACATCAAGGAAGGAAGAATG 58.985 43.478 0.00 0.00 0.00 2.67
1221 2124 0.321741 AGAGACTTCTGCTCCGACGA 60.322 55.000 0.00 0.00 32.82 4.20
1232 2141 3.056304 GCGCATTATCTCCAGAGACTTC 58.944 50.000 0.30 0.00 40.75 3.01
1238 2147 2.988010 ACTTGCGCATTATCTCCAGA 57.012 45.000 12.75 0.00 0.00 3.86
1341 2250 1.399057 GGGGTAGGAAAGGGAGGGA 59.601 63.158 0.00 0.00 0.00 4.20
1346 2255 1.893315 TGAGATGGGGTAGGAAAGGG 58.107 55.000 0.00 0.00 0.00 3.95
1350 2259 3.652869 GGAATGATGAGATGGGGTAGGAA 59.347 47.826 0.00 0.00 0.00 3.36
1351 2260 3.251484 GGAATGATGAGATGGGGTAGGA 58.749 50.000 0.00 0.00 0.00 2.94
1352 2261 2.027745 CGGAATGATGAGATGGGGTAGG 60.028 54.545 0.00 0.00 0.00 3.18
1354 2263 1.977854 CCGGAATGATGAGATGGGGTA 59.022 52.381 0.00 0.00 0.00 3.69
1355 2264 0.767375 CCGGAATGATGAGATGGGGT 59.233 55.000 0.00 0.00 0.00 4.95
1356 2265 0.607489 GCCGGAATGATGAGATGGGG 60.607 60.000 5.05 0.00 0.00 4.96
1359 2268 1.347050 AGGAGCCGGAATGATGAGATG 59.653 52.381 5.05 0.00 0.00 2.90
1361 2270 2.242926 CTAGGAGCCGGAATGATGAGA 58.757 52.381 5.05 0.00 0.00 3.27
1362 2271 1.967066 ACTAGGAGCCGGAATGATGAG 59.033 52.381 5.05 0.00 0.00 2.90
1363 2272 2.088104 ACTAGGAGCCGGAATGATGA 57.912 50.000 5.05 0.00 0.00 2.92
1364 2273 2.918712 AACTAGGAGCCGGAATGATG 57.081 50.000 5.05 0.00 0.00 3.07
1366 2275 3.964688 TCAATAACTAGGAGCCGGAATGA 59.035 43.478 5.05 0.00 0.00 2.57
1367 2276 4.202264 ACTCAATAACTAGGAGCCGGAATG 60.202 45.833 5.05 0.00 31.88 2.67
1368 2277 3.967987 ACTCAATAACTAGGAGCCGGAAT 59.032 43.478 5.05 0.00 31.88 3.01
1369 2278 3.371965 ACTCAATAACTAGGAGCCGGAA 58.628 45.455 5.05 0.00 31.88 4.30
1372 2281 2.866762 GCAACTCAATAACTAGGAGCCG 59.133 50.000 0.00 0.00 31.88 5.52
1373 2282 3.873952 CAGCAACTCAATAACTAGGAGCC 59.126 47.826 0.00 0.00 31.88 4.70
1374 2283 3.311048 GCAGCAACTCAATAACTAGGAGC 59.689 47.826 0.00 0.00 31.88 4.70
1375 2284 3.873952 GGCAGCAACTCAATAACTAGGAG 59.126 47.826 0.00 0.00 34.85 3.69
1376 2285 3.519510 AGGCAGCAACTCAATAACTAGGA 59.480 43.478 0.00 0.00 0.00 2.94
1377 2286 3.873952 GAGGCAGCAACTCAATAACTAGG 59.126 47.826 0.00 0.00 35.09 3.02
1378 2287 3.553511 CGAGGCAGCAACTCAATAACTAG 59.446 47.826 0.00 0.00 34.66 2.57
1379 2288 3.194755 TCGAGGCAGCAACTCAATAACTA 59.805 43.478 0.00 0.00 34.66 2.24
1380 2289 2.028112 TCGAGGCAGCAACTCAATAACT 60.028 45.455 0.00 0.00 34.66 2.24
1381 2290 2.346803 TCGAGGCAGCAACTCAATAAC 58.653 47.619 0.00 0.00 34.66 1.89
1382 2291 2.760634 TCGAGGCAGCAACTCAATAA 57.239 45.000 0.00 0.00 34.66 1.40
1383 2292 2.938451 CAATCGAGGCAGCAACTCAATA 59.062 45.455 0.00 0.00 34.66 1.90
1384 2293 1.741706 CAATCGAGGCAGCAACTCAAT 59.258 47.619 0.00 0.00 34.66 2.57
1385 2294 1.159285 CAATCGAGGCAGCAACTCAA 58.841 50.000 0.00 0.00 34.66 3.02
1386 2295 0.674581 CCAATCGAGGCAGCAACTCA 60.675 55.000 0.00 0.00 34.66 3.41
1387 2296 0.674895 ACCAATCGAGGCAGCAACTC 60.675 55.000 0.00 0.00 0.00 3.01
1388 2297 0.613260 TACCAATCGAGGCAGCAACT 59.387 50.000 0.00 0.00 0.00 3.16
1389 2298 1.009829 CTACCAATCGAGGCAGCAAC 58.990 55.000 0.00 0.00 0.00 4.17
1390 2299 0.744414 GCTACCAATCGAGGCAGCAA 60.744 55.000 10.32 0.00 45.57 3.91
1391 2300 1.153369 GCTACCAATCGAGGCAGCA 60.153 57.895 10.32 0.00 45.57 4.41
1392 2301 0.462759 AAGCTACCAATCGAGGCAGC 60.463 55.000 7.67 7.67 46.44 5.25
1393 2302 1.667724 CAAAGCTACCAATCGAGGCAG 59.332 52.381 0.00 0.00 0.00 4.85
1394 2303 1.277842 TCAAAGCTACCAATCGAGGCA 59.722 47.619 0.00 0.00 0.00 4.75
1395 2304 2.024176 TCAAAGCTACCAATCGAGGC 57.976 50.000 0.00 0.00 0.00 4.70
1396 2305 4.191544 TCAATCAAAGCTACCAATCGAGG 58.808 43.478 0.00 0.00 0.00 4.63
1400 2309 6.276091 GGGAAATCAATCAAAGCTACCAATC 58.724 40.000 0.00 0.00 0.00 2.67
1402 2311 4.466015 GGGGAAATCAATCAAAGCTACCAA 59.534 41.667 0.00 0.00 0.00 3.67
1404 2313 3.066760 CGGGGAAATCAATCAAAGCTACC 59.933 47.826 0.00 0.00 0.00 3.18
1406 2315 2.687935 GCGGGGAAATCAATCAAAGCTA 59.312 45.455 0.00 0.00 0.00 3.32
1410 2319 1.548269 GGTGCGGGGAAATCAATCAAA 59.452 47.619 0.00 0.00 0.00 2.69
1414 2323 2.746279 TATGGTGCGGGGAAATCAAT 57.254 45.000 0.00 0.00 0.00 2.57
1419 2328 1.134220 GTCTGATATGGTGCGGGGAAA 60.134 52.381 0.00 0.00 0.00 3.13
1423 2332 0.397941 ATGGTCTGATATGGTGCGGG 59.602 55.000 0.00 0.00 0.00 6.13
1426 2335 1.878088 CAGCATGGTCTGATATGGTGC 59.122 52.381 17.74 8.78 43.20 5.01
1428 2337 3.548770 CAACAGCATGGTCTGATATGGT 58.451 45.455 7.27 4.43 43.62 3.55
1429 2338 2.882761 CCAACAGCATGGTCTGATATGG 59.117 50.000 7.27 8.15 43.62 2.74
1439 2348 1.588082 GCCAAGACCAACAGCATGG 59.412 57.895 0.00 2.02 43.62 3.66
1442 2351 2.203480 GGGCCAAGACCAACAGCA 60.203 61.111 4.39 0.00 0.00 4.41
1443 2352 1.832167 TTGGGCCAAGACCAACAGC 60.832 57.895 16.66 0.00 44.30 4.40
1448 2357 2.094100 TTGATTTTGGGCCAAGACCA 57.906 45.000 19.90 9.79 40.08 4.02
1450 2359 3.511146 TCTGATTGATTTTGGGCCAAGAC 59.489 43.478 19.90 14.50 0.00 3.01
1451 2360 3.777087 TCTGATTGATTTTGGGCCAAGA 58.223 40.909 19.90 16.15 0.00 3.02
1452 2361 4.248058 GTTCTGATTGATTTTGGGCCAAG 58.752 43.478 19.90 4.28 0.00 3.61
1453 2362 3.007831 GGTTCTGATTGATTTTGGGCCAA 59.992 43.478 16.66 16.66 0.00 4.52
1454 2363 2.566724 GGTTCTGATTGATTTTGGGCCA 59.433 45.455 0.00 0.00 0.00 5.36
1457 2366 2.230992 TGCGGTTCTGATTGATTTTGGG 59.769 45.455 0.00 0.00 0.00 4.12
1458 2367 3.057315 AGTGCGGTTCTGATTGATTTTGG 60.057 43.478 0.00 0.00 0.00 3.28
1459 2368 4.083110 AGAGTGCGGTTCTGATTGATTTTG 60.083 41.667 0.00 0.00 0.00 2.44
1460 2369 4.074970 AGAGTGCGGTTCTGATTGATTTT 58.925 39.130 0.00 0.00 0.00 1.82
1464 2382 1.941209 GCAGAGTGCGGTTCTGATTGA 60.941 52.381 14.01 0.00 43.75 2.57
1475 2393 2.510238 GCTGGTAGGCAGAGTGCG 60.510 66.667 0.00 0.00 46.21 5.34
1476 2394 2.124942 GGCTGGTAGGCAGAGTGC 60.125 66.667 0.00 0.00 44.08 4.40
1477 2395 2.185350 CGGCTGGTAGGCAGAGTG 59.815 66.667 3.29 0.00 41.44 3.51
1478 2396 3.775654 GCGGCTGGTAGGCAGAGT 61.776 66.667 0.00 0.00 41.44 3.24
1479 2397 3.465403 AGCGGCTGGTAGGCAGAG 61.465 66.667 0.00 0.00 41.44 3.35
1484 2402 1.750399 ATTTGCAGCGGCTGGTAGG 60.750 57.895 29.44 6.01 41.91 3.18
1505 2443 5.334879 CGCACTGTTTGACCTTAATTAGCTT 60.335 40.000 0.00 0.00 0.00 3.74
1506 2444 4.154195 CGCACTGTTTGACCTTAATTAGCT 59.846 41.667 0.00 0.00 0.00 3.32
1546 2487 6.860023 GGCATATAAATGAAGTCTGTTGATGC 59.140 38.462 0.00 0.00 34.84 3.91
1553 2494 5.996513 AGAGCAGGCATATAAATGAAGTCTG 59.003 40.000 0.00 0.00 34.84 3.51
1569 2510 2.158986 ACATCACATCAGTAGAGCAGGC 60.159 50.000 0.00 0.00 0.00 4.85
1579 2532 2.014857 CAAGGAGGCACATCACATCAG 58.985 52.381 0.00 0.00 0.00 2.90
1628 2589 4.221342 CGATGAACATGAACACTGTTTGG 58.779 43.478 0.00 0.00 36.98 3.28
1644 2611 3.776340 TGATTTACACTAGCGCGATGAA 58.224 40.909 12.10 0.00 0.00 2.57
1645 2612 3.430333 TGATTTACACTAGCGCGATGA 57.570 42.857 12.10 0.00 0.00 2.92
1646 2613 3.602491 GCTTGATTTACACTAGCGCGATG 60.602 47.826 12.10 4.18 0.00 3.84
1647 2614 2.540101 GCTTGATTTACACTAGCGCGAT 59.460 45.455 12.10 5.99 0.00 4.58
1648 2615 1.924524 GCTTGATTTACACTAGCGCGA 59.075 47.619 12.10 0.00 0.00 5.87
1649 2616 1.658596 TGCTTGATTTACACTAGCGCG 59.341 47.619 0.00 0.00 38.50 6.86
1700 2667 9.255304 GGTTTTGCTTTCAGTTAACAATCAATA 57.745 29.630 8.61 0.00 0.00 1.90
1732 2726 2.123338 AGCAAGGCCCTGCACAAA 60.123 55.556 27.74 0.00 45.18 2.83
1733 2727 2.913578 CAGCAAGGCCCTGCACAA 60.914 61.111 27.74 0.00 45.18 3.33
1734 2728 3.888460 TCAGCAAGGCCCTGCACA 61.888 61.111 27.74 11.01 45.18 4.57
1735 2729 3.368571 GTCAGCAAGGCCCTGCAC 61.369 66.667 27.74 14.57 45.18 4.57
1736 2730 4.666253 GGTCAGCAAGGCCCTGCA 62.666 66.667 27.74 5.62 45.18 4.41
1802 2796 5.694006 CGTAAGAAGGCTGGAGATGATTAAG 59.306 44.000 0.00 0.00 43.02 1.85
1870 2864 1.303888 CAGGTTCAGGCAGGCATGT 60.304 57.895 5.79 0.00 0.00 3.21
1897 2891 5.507315 CGTAATGCCTGGGTTGATTAAATCC 60.507 44.000 0.00 0.00 39.82 3.01
1898 2892 5.298276 TCGTAATGCCTGGGTTGATTAAATC 59.702 40.000 0.00 0.00 0.00 2.17
1899 2893 5.067283 GTCGTAATGCCTGGGTTGATTAAAT 59.933 40.000 0.00 0.00 0.00 1.40
1903 2897 2.365582 GTCGTAATGCCTGGGTTGATT 58.634 47.619 0.00 0.00 0.00 2.57
1904 2898 1.742411 CGTCGTAATGCCTGGGTTGAT 60.742 52.381 0.00 0.00 0.00 2.57
1906 2900 0.390603 TCGTCGTAATGCCTGGGTTG 60.391 55.000 0.00 0.00 0.00 3.77
1907 2901 0.390735 GTCGTCGTAATGCCTGGGTT 60.391 55.000 0.00 0.00 0.00 4.11
1908 2902 1.217244 GTCGTCGTAATGCCTGGGT 59.783 57.895 0.00 0.00 0.00 4.51
1909 2903 0.390603 TTGTCGTCGTAATGCCTGGG 60.391 55.000 0.00 0.00 0.00 4.45
1996 2997 3.260884 AGAAGGCGGAGATGTTAGAAACA 59.739 43.478 0.00 0.00 46.94 2.83
2040 3042 0.027979 CATCCTTGTTATGCACGCCG 59.972 55.000 0.00 0.00 0.00 6.46
2041 3043 0.381801 CCATCCTTGTTATGCACGCC 59.618 55.000 0.00 0.00 0.00 5.68
2111 3114 3.053896 GGCTGAAACCGAACCCCG 61.054 66.667 0.00 0.00 38.18 5.73
2115 3118 1.269569 CCAAAAGGGCTGAAACCGAAC 60.270 52.381 0.00 0.00 0.00 3.95
2116 3119 1.036707 CCAAAAGGGCTGAAACCGAA 58.963 50.000 0.00 0.00 0.00 4.30
2130 3133 5.007034 TCGGACAATGATAAGAAGCCAAAA 58.993 37.500 0.00 0.00 0.00 2.44
2189 3202 0.875728 CGGTGGCAAAATCACGGTTA 59.124 50.000 0.00 0.00 36.09 2.85
2191 3204 2.265182 CCGGTGGCAAAATCACGGT 61.265 57.895 0.00 0.00 36.09 4.83
2192 3205 1.922135 CTCCGGTGGCAAAATCACGG 61.922 60.000 0.00 0.00 36.09 4.94
2193 3206 1.501741 CTCCGGTGGCAAAATCACG 59.498 57.895 0.00 0.00 36.09 4.35
2194 3207 1.212751 GCTCCGGTGGCAAAATCAC 59.787 57.895 15.08 0.00 34.61 3.06
2195 3208 1.228398 TGCTCCGGTGGCAAAATCA 60.228 52.632 19.04 0.00 36.71 2.57
2196 3209 1.212751 GTGCTCCGGTGGCAAAATC 59.787 57.895 21.88 9.61 41.54 2.17
2197 3210 1.112315 TTGTGCTCCGGTGGCAAAAT 61.112 50.000 21.88 0.00 41.54 1.82
2232 3247 0.107312 ATGCCAGCATCACAGGAGAC 60.107 55.000 0.00 0.00 29.42 3.36
2267 3282 7.065324 TGTTTACCATACACAAGTAATGCTAGC 59.935 37.037 8.10 8.10 33.13 3.42
2309 3327 2.844946 TCCAGTTGAAAATCAGCACGA 58.155 42.857 0.00 0.00 29.40 4.35
2317 3335 7.855784 AGTAAATCCCTTTCCAGTTGAAAAT 57.144 32.000 0.00 0.00 42.25 1.82
2318 3336 7.780745 TGTAGTAAATCCCTTTCCAGTTGAAAA 59.219 33.333 0.00 0.00 42.25 2.29
2343 3361 6.317789 TGATTCTAACCAAGCTTTCACTTG 57.682 37.500 0.00 0.00 45.42 3.16
2355 3373 6.173339 GGTGAAGAACAGATGATTCTAACCA 58.827 40.000 11.73 0.00 40.03 3.67
2405 3505 1.308998 CATCCCTTACATTCCACGGC 58.691 55.000 0.00 0.00 0.00 5.68
2496 3601 7.717875 ACAACATACCAGCAGAAACTAAACTAA 59.282 33.333 0.00 0.00 0.00 2.24
2682 3794 0.602638 CTAAGCTGTGGTGTCGGCAA 60.603 55.000 0.00 0.00 41.63 4.52
2685 3797 2.427453 AGTATCTAAGCTGTGGTGTCGG 59.573 50.000 0.00 0.00 0.00 4.79
2689 3801 2.169352 AGGCAGTATCTAAGCTGTGGTG 59.831 50.000 0.00 0.00 35.33 4.17
2712 3829 2.264813 GCGCGTGTAAGGAACAGATAA 58.735 47.619 8.43 0.00 39.29 1.75
2713 3830 1.202817 TGCGCGTGTAAGGAACAGATA 59.797 47.619 8.43 0.00 39.29 1.98
2718 3846 2.468532 CGTGCGCGTGTAAGGAAC 59.531 61.111 12.43 0.00 0.00 3.62
2721 3849 2.162120 TATGCGTGCGCGTGTAAGG 61.162 57.895 22.18 0.00 45.51 2.69
2724 3852 2.881827 GGTATGCGTGCGCGTGTA 60.882 61.111 22.18 11.46 45.51 2.90
2731 3859 0.447801 CCTGAAACAGGTATGCGTGC 59.552 55.000 9.36 0.00 45.82 5.34
2800 3928 3.807622 CCTCTCGAGCAAAACAAGTGTTA 59.192 43.478 7.81 0.00 37.25 2.41
2806 3934 0.250727 CCCCCTCTCGAGCAAAACAA 60.251 55.000 7.81 0.00 0.00 2.83
3127 4277 1.076024 AGATGAGTTGTTGGGTGCCAT 59.924 47.619 0.00 0.00 31.53 4.40
3227 4403 2.126071 CGTCACGTGGAGGCGAAT 60.126 61.111 17.00 0.00 35.59 3.34
3228 4404 3.547249 GACGTCACGTGGAGGCGAA 62.547 63.158 8.08 0.00 41.37 4.70
3231 4407 3.338126 ATCGACGTCACGTGGAGGC 62.338 63.158 20.07 11.28 46.21 4.70
3232 4408 1.514228 CATCGACGTCACGTGGAGG 60.514 63.158 20.07 16.44 46.21 4.30
3233 4409 0.098905 ATCATCGACGTCACGTGGAG 59.901 55.000 20.07 12.13 46.21 3.86
3234 4410 0.179174 CATCATCGACGTCACGTGGA 60.179 55.000 17.81 17.81 46.93 4.02
3235 4411 0.179174 TCATCATCGACGTCACGTGG 60.179 55.000 8.08 6.85 41.37 4.94
3236 4412 1.827578 ATCATCATCGACGTCACGTG 58.172 50.000 8.08 9.94 41.37 4.49
3237 4413 2.451132 GAATCATCATCGACGTCACGT 58.549 47.619 17.16 0.09 45.10 4.49
3238 4414 1.444634 CGAATCATCATCGACGTCACG 59.555 52.381 17.16 2.92 42.76 4.35
3239 4415 1.188138 GCGAATCATCATCGACGTCAC 59.812 52.381 17.16 0.00 42.76 3.67
3240 4416 1.065551 AGCGAATCATCATCGACGTCA 59.934 47.619 17.16 3.13 42.76 4.35
3241 4417 1.711298 GAGCGAATCATCATCGACGTC 59.289 52.381 5.18 5.18 42.76 4.34
3242 4418 1.600663 GGAGCGAATCATCATCGACGT 60.601 52.381 0.00 0.00 42.76 4.34
3243 4419 1.056103 GGAGCGAATCATCATCGACG 58.944 55.000 0.00 0.00 42.76 5.12
3244 4420 2.140065 TGGAGCGAATCATCATCGAC 57.860 50.000 0.00 0.00 42.76 4.20
3245 4421 2.036346 ACATGGAGCGAATCATCATCGA 59.964 45.455 0.00 0.00 42.76 3.59
3246 4422 2.157085 CACATGGAGCGAATCATCATCG 59.843 50.000 0.00 0.00 42.99 3.84
3247 4423 3.186001 GTCACATGGAGCGAATCATCATC 59.814 47.826 0.00 0.00 0.00 2.92
3248 4424 3.136763 GTCACATGGAGCGAATCATCAT 58.863 45.455 0.00 0.00 0.00 2.45
3249 4425 2.554142 GTCACATGGAGCGAATCATCA 58.446 47.619 0.00 0.00 0.00 3.07
3250 4426 1.524355 CGTCACATGGAGCGAATCATC 59.476 52.381 0.00 0.00 0.00 2.92
3251 4427 1.134699 ACGTCACATGGAGCGAATCAT 60.135 47.619 11.02 0.00 0.00 2.45
3252 4428 0.246360 ACGTCACATGGAGCGAATCA 59.754 50.000 11.02 0.00 0.00 2.57
3264 4440 4.537015 GTCATCATATCATCGACGTCACA 58.463 43.478 17.16 0.88 0.00 3.58
3269 4445 3.420828 CTCGGTCATCATATCATCGACG 58.579 50.000 0.00 0.00 0.00 5.12
3275 4451 3.123050 CAAACGCTCGGTCATCATATCA 58.877 45.455 0.00 0.00 0.00 2.15
3278 4454 2.951457 TCAAACGCTCGGTCATCATA 57.049 45.000 0.00 0.00 0.00 2.15
3279 4455 2.205074 GATCAAACGCTCGGTCATCAT 58.795 47.619 0.00 0.00 0.00 2.45
3298 4474 2.018515 AGCTTGGTTTTTCGGTTTCGA 58.981 42.857 0.00 0.00 44.44 3.71
3346 4522 9.436957 CAATTCTTGTAGACCAAATAGTACTGT 57.563 33.333 5.39 0.00 31.20 3.55
3353 4533 8.458573 ACAACACAATTCTTGTAGACCAAATA 57.541 30.769 0.00 0.00 43.23 1.40
3377 4557 4.618489 GCAACACAGAGATGCATAACAAAC 59.382 41.667 0.00 0.00 44.62 2.93
3396 4579 1.660104 CAGTGTGGTTGCAAAAGCAAC 59.340 47.619 21.41 21.41 46.40 4.17
3468 4828 1.682323 CTAGCTAGGGTTCCTCCGTTC 59.318 57.143 13.32 0.00 34.61 3.95
3486 4846 1.064758 CCACTGGTAATTGCCTGGCTA 60.065 52.381 21.03 13.43 32.57 3.93
3488 4848 1.322538 CCCACTGGTAATTGCCTGGC 61.323 60.000 20.60 12.87 32.57 4.85
3489 4849 0.039618 ACCCACTGGTAATTGCCTGG 59.960 55.000 20.60 16.49 45.45 4.45
3490 4850 1.176527 CACCCACTGGTAATTGCCTG 58.823 55.000 16.21 16.21 45.57 4.85
3491 4851 1.072266 TCACCCACTGGTAATTGCCT 58.928 50.000 14.11 0.00 45.57 4.75
3492 4852 1.750778 CATCACCCACTGGTAATTGCC 59.249 52.381 5.49 5.49 45.57 4.52
3493 4853 1.750778 CCATCACCCACTGGTAATTGC 59.249 52.381 0.00 0.00 45.57 3.56
3494 4854 2.754552 CACCATCACCCACTGGTAATTG 59.245 50.000 0.00 0.00 45.57 2.32
3495 4855 2.647299 TCACCATCACCCACTGGTAATT 59.353 45.455 0.00 0.00 45.57 1.40
3496 4856 2.239654 CTCACCATCACCCACTGGTAAT 59.760 50.000 0.00 0.00 45.57 1.89
3497 4857 1.628340 CTCACCATCACCCACTGGTAA 59.372 52.381 0.00 0.00 45.57 2.85
3498 4858 1.275666 CTCACCATCACCCACTGGTA 58.724 55.000 0.00 0.00 45.57 3.25
3500 4860 0.321919 CACTCACCATCACCCACTGG 60.322 60.000 0.00 0.00 38.55 4.00
3501 4861 0.686789 TCACTCACCATCACCCACTG 59.313 55.000 0.00 0.00 0.00 3.66
3502 4862 0.979665 CTCACTCACCATCACCCACT 59.020 55.000 0.00 0.00 0.00 4.00
3553 4913 6.999272 TGGACTTCTACTACCTATCTAGCTTG 59.001 42.308 0.00 0.00 0.00 4.01
3554 4914 7.151694 TGGACTTCTACTACCTATCTAGCTT 57.848 40.000 0.00 0.00 0.00 3.74
3595 4955 4.048470 GTGGGTGCCCTCCCCTTC 62.048 72.222 8.91 0.00 46.48 3.46
3603 4963 0.536724 GATTGAATTGGTGGGTGCCC 59.463 55.000 0.00 0.00 0.00 5.36
3606 4966 4.804868 TGATTGATTGAATTGGTGGGTG 57.195 40.909 0.00 0.00 0.00 4.61
3607 4967 4.322953 GCTTGATTGATTGAATTGGTGGGT 60.323 41.667 0.00 0.00 0.00 4.51
3608 4968 4.081309 AGCTTGATTGATTGAATTGGTGGG 60.081 41.667 0.00 0.00 0.00 4.61
3609 4969 5.080969 AGCTTGATTGATTGAATTGGTGG 57.919 39.130 0.00 0.00 0.00 4.61
3610 4970 5.575606 GTGAGCTTGATTGATTGAATTGGTG 59.424 40.000 0.00 0.00 0.00 4.17
3611 4971 5.479375 AGTGAGCTTGATTGATTGAATTGGT 59.521 36.000 0.00 0.00 0.00 3.67
3612 4972 5.962433 AGTGAGCTTGATTGATTGAATTGG 58.038 37.500 0.00 0.00 0.00 3.16
3613 4973 6.527023 GTGAGTGAGCTTGATTGATTGAATTG 59.473 38.462 0.00 0.00 0.00 2.32
3616 4976 5.180680 CAGTGAGTGAGCTTGATTGATTGAA 59.819 40.000 0.00 0.00 0.00 2.69
3617 4977 4.694037 CAGTGAGTGAGCTTGATTGATTGA 59.306 41.667 0.00 0.00 0.00 2.57
3618 4978 4.694037 TCAGTGAGTGAGCTTGATTGATTG 59.306 41.667 0.00 0.00 0.00 2.67
3621 4981 3.323115 AGTCAGTGAGTGAGCTTGATTGA 59.677 43.478 0.00 0.00 35.13 2.57
3622 4982 3.661944 AGTCAGTGAGTGAGCTTGATTG 58.338 45.455 0.00 0.00 35.13 2.67
3623 4983 4.348863 AAGTCAGTGAGTGAGCTTGATT 57.651 40.909 0.00 0.00 35.13 2.57
3624 4984 5.011533 ACTTAAGTCAGTGAGTGAGCTTGAT 59.988 40.000 1.12 0.00 35.13 2.57
3625 4985 4.342378 ACTTAAGTCAGTGAGTGAGCTTGA 59.658 41.667 1.12 6.30 35.13 3.02
3626 4986 4.447054 CACTTAAGTCAGTGAGTGAGCTTG 59.553 45.833 4.77 0.00 46.29 4.01
3627 4987 4.100189 ACACTTAAGTCAGTGAGTGAGCTT 59.900 41.667 14.42 7.19 46.29 3.74
3628 4988 3.639094 ACACTTAAGTCAGTGAGTGAGCT 59.361 43.478 14.42 0.00 46.29 4.09
3629 4989 3.738282 CACACTTAAGTCAGTGAGTGAGC 59.262 47.826 17.13 0.00 46.29 4.26
3671 5031 3.755378 GGAGAAAAGATGAAGAAGCAGCA 59.245 43.478 0.00 0.00 0.00 4.41
3680 5040 4.407365 GTGGGAAAGGGAGAAAAGATGAA 58.593 43.478 0.00 0.00 0.00 2.57
3683 5043 2.290960 CCGTGGGAAAGGGAGAAAAGAT 60.291 50.000 0.00 0.00 35.72 2.40
3685 5045 1.534729 CCGTGGGAAAGGGAGAAAAG 58.465 55.000 0.00 0.00 35.72 2.27


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.