Multiple sequence alignment - TraesCS6D01G004900

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G004900 chr6D 100.000 5702 0 0 1 5702 2264401 2270102 0.000000e+00 10530
1 TraesCS6D01G004900 chr6D 91.581 487 24 12 3300 3772 439362989 439362506 0.000000e+00 656
2 TraesCS6D01G004900 chr6D 90.133 375 25 8 3845 4208 439362507 439362134 1.440000e-130 477
3 TraesCS6D01G004900 chr6D 89.333 375 28 8 3845 4208 219368183 219367810 1.450000e-125 460
4 TraesCS6D01G004900 chr6D 89.189 370 28 8 3845 4203 419685307 419684939 8.710000e-123 451
5 TraesCS6D01G004900 chr6A 89.755 5017 328 82 136 5051 628884 633815 0.000000e+00 6246
6 TraesCS6D01G004900 chr6A 84.772 197 11 15 5522 5702 634623 634816 4.540000e-41 180
7 TraesCS6D01G004900 chr6A 87.356 87 11 0 17 103 628800 628886 3.640000e-17 100
8 TraesCS6D01G004900 chr6B 92.192 2792 139 32 955 3694 3890871 3888107 0.000000e+00 3875
9 TraesCS6D01G004900 chr6B 85.762 1201 78 29 3914 5067 3888017 3886863 0.000000e+00 1184
10 TraesCS6D01G004900 chr6B 87.826 345 22 6 436 760 3891632 3891288 2.490000e-103 387
11 TraesCS6D01G004900 chr7D 89.600 375 27 8 3845 4208 107875760 107875387 3.110000e-127 466
12 TraesCS6D01G004900 chr4D 89.600 375 27 8 3845 4208 134392430 134392057 3.110000e-127 466
13 TraesCS6D01G004900 chr3D 89.600 375 27 8 3845 4208 451660538 451660911 3.110000e-127 466
14 TraesCS6D01G004900 chr3D 89.333 375 28 8 3845 4208 201209170 201208797 1.450000e-125 460
15 TraesCS6D01G004900 chr3D 88.267 375 26 9 3845 4208 5490015 5490382 3.160000e-117 433


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G004900 chr6D 2264401 2270102 5701 False 10530.000000 10530 100.000000 1 5702 1 chr6D.!!$F1 5701
1 TraesCS6D01G004900 chr6D 439362134 439362989 855 True 566.500000 656 90.857000 3300 4208 2 chr6D.!!$R3 908
2 TraesCS6D01G004900 chr6A 628800 634816 6016 False 2175.333333 6246 87.294333 17 5702 3 chr6A.!!$F1 5685
3 TraesCS6D01G004900 chr6B 3886863 3891632 4769 True 1815.333333 3875 88.593333 436 5067 3 chr6B.!!$R1 4631

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
406 409 0.035725 CGGAGGGGAACTAAACCACC 60.036 60.0 0.00 0.00 0.00 4.61 F
415 429 0.195096 ACTAAACCACCTCCCTCCCA 59.805 55.0 0.00 0.00 0.00 4.37 F
468 482 0.395724 GGGTTCAGGGGTGGCATTAG 60.396 60.0 0.00 0.00 0.00 1.73 F
1332 1621 0.834612 CCTTTGGGGCCGTATACAGA 59.165 55.0 3.32 0.00 0.00 3.41 F
2372 2691 0.040067 GACGGAACTGCAAAAGCCAG 60.040 55.0 0.00 0.00 36.41 4.85 F
3863 4203 0.184933 TAACAAGCCCTGCTGTTGGT 59.815 50.0 11.51 0.46 39.62 3.67 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1527 1834 0.526954 CAGCGCCATCCAGAAAATGC 60.527 55.0 2.29 0.00 0.0 3.56 R
1735 2045 0.613260 TGGAGCCTGATAAAGTGCGT 59.387 50.0 0.00 0.00 0.0 5.24 R
1736 2046 1.293924 CTGGAGCCTGATAAAGTGCG 58.706 55.0 0.00 0.00 0.0 5.34 R
2725 3044 0.324285 ACCTCTGCTCTGAAGGCTTG 59.676 55.0 3.46 0.00 0.0 4.01 R
3993 4337 0.394192 TCGGGCATAATGAGCTCTGG 59.606 55.0 16.19 0.97 0.0 3.86 R
4858 5252 0.038159 CACTTCTTCCGACTCCGCTT 60.038 55.0 0.00 0.00 0.0 4.68 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
59 60 4.008074 AGACCGACACATGTTTCATCTT 57.992 40.909 12.28 0.00 0.00 2.40
64 65 4.201851 CCGACACATGTTTCATCTTGATCC 60.202 45.833 12.28 0.00 0.00 3.36
67 68 3.940852 CACATGTTTCATCTTGATCCGGA 59.059 43.478 6.61 6.61 0.00 5.14
70 71 3.599343 TGTTTCATCTTGATCCGGACTG 58.401 45.455 6.12 0.00 0.00 3.51
83 84 3.460103 TCCGGACTGTACAACAACTTTC 58.540 45.455 0.00 0.00 0.00 2.62
84 85 3.133362 TCCGGACTGTACAACAACTTTCT 59.867 43.478 0.00 0.00 0.00 2.52
87 88 4.569162 CGGACTGTACAACAACTTTCTCAA 59.431 41.667 0.00 0.00 0.00 3.02
100 101 9.936759 AACAACTTTCTCAAAAGAATAAAACCA 57.063 25.926 4.99 0.00 43.90 3.67
101 102 9.366216 ACAACTTTCTCAAAAGAATAAAACCAC 57.634 29.630 4.99 0.00 43.90 4.16
102 103 9.364989 CAACTTTCTCAAAAGAATAAAACCACA 57.635 29.630 4.99 0.00 43.90 4.17
103 104 9.936759 AACTTTCTCAAAAGAATAAAACCACAA 57.063 25.926 4.99 0.00 43.90 3.33
104 105 9.366216 ACTTTCTCAAAAGAATAAAACCACAAC 57.634 29.630 4.99 0.00 43.90 3.32
105 106 9.586435 CTTTCTCAAAAGAATAAAACCACAACT 57.414 29.630 0.00 0.00 43.90 3.16
110 111 9.672086 TCAAAAGAATAAAACCACAACTATTCG 57.328 29.630 0.00 0.00 36.37 3.34
111 112 9.672086 CAAAAGAATAAAACCACAACTATTCGA 57.328 29.630 0.00 0.00 36.37 3.71
114 115 8.786826 AGAATAAAACCACAACTATTCGATCA 57.213 30.769 0.00 0.00 36.37 2.92
115 116 8.883731 AGAATAAAACCACAACTATTCGATCAG 58.116 33.333 0.00 0.00 36.37 2.90
116 117 8.561738 AATAAAACCACAACTATTCGATCAGT 57.438 30.769 0.00 0.00 0.00 3.41
117 118 5.862924 AAACCACAACTATTCGATCAGTG 57.137 39.130 0.60 0.00 0.00 3.66
118 119 4.801330 ACCACAACTATTCGATCAGTGA 57.199 40.909 0.00 0.00 0.00 3.41
119 120 5.344743 ACCACAACTATTCGATCAGTGAT 57.655 39.130 4.98 4.98 0.00 3.06
120 121 5.111989 ACCACAACTATTCGATCAGTGATG 58.888 41.667 11.20 3.37 0.00 3.07
121 122 5.105351 ACCACAACTATTCGATCAGTGATGA 60.105 40.000 11.20 5.80 0.00 2.92
122 123 5.461407 CCACAACTATTCGATCAGTGATGAG 59.539 44.000 11.20 4.60 0.00 2.90
123 124 5.046529 ACAACTATTCGATCAGTGATGAGC 58.953 41.667 11.20 0.00 0.00 4.26
124 125 5.163468 ACAACTATTCGATCAGTGATGAGCT 60.163 40.000 11.20 0.00 0.00 4.09
125 126 6.039829 ACAACTATTCGATCAGTGATGAGCTA 59.960 38.462 11.20 4.28 0.00 3.32
126 127 6.641169 ACTATTCGATCAGTGATGAGCTAA 57.359 37.500 11.20 0.00 0.00 3.09
127 128 7.225784 ACTATTCGATCAGTGATGAGCTAAT 57.774 36.000 11.20 3.19 0.00 1.73
128 129 7.665690 ACTATTCGATCAGTGATGAGCTAATT 58.334 34.615 11.20 0.00 0.00 1.40
129 130 8.147058 ACTATTCGATCAGTGATGAGCTAATTT 58.853 33.333 11.20 0.00 0.00 1.82
130 131 9.631452 CTATTCGATCAGTGATGAGCTAATTTA 57.369 33.333 11.20 0.00 0.00 1.40
131 132 8.893219 ATTCGATCAGTGATGAGCTAATTTAA 57.107 30.769 11.20 0.00 0.00 1.52
132 133 8.893219 TTCGATCAGTGATGAGCTAATTTAAT 57.107 30.769 11.20 0.00 0.00 1.40
133 134 9.981114 TTCGATCAGTGATGAGCTAATTTAATA 57.019 29.630 11.20 0.00 0.00 0.98
134 135 9.631452 TCGATCAGTGATGAGCTAATTTAATAG 57.369 33.333 11.20 0.00 0.00 1.73
144 145 6.646653 TGAGCTAATTTAATAGACATCGCCAG 59.353 38.462 0.00 0.00 0.00 4.85
156 158 2.416547 ACATCGCCAGATTCGTTTTCTG 59.583 45.455 5.43 5.43 40.25 3.02
164 166 4.324267 CAGATTCGTTTTCTGGTACCCTT 58.676 43.478 10.07 0.00 37.53 3.95
166 168 4.760204 AGATTCGTTTTCTGGTACCCTTTG 59.240 41.667 10.07 0.00 0.00 2.77
169 171 2.953648 CGTTTTCTGGTACCCTTTGGTT 59.046 45.455 10.07 0.00 44.75 3.67
170 172 3.004002 CGTTTTCTGGTACCCTTTGGTTC 59.996 47.826 10.07 0.00 44.75 3.62
180 182 2.456577 CCCTTTGGTTCATGGGTTAGG 58.543 52.381 0.00 0.00 35.13 2.69
186 188 2.661066 TTCATGGGTTAGGCGCCGA 61.661 57.895 23.20 14.61 0.00 5.54
194 196 4.772231 TAGGCGCCGACCCCTCTT 62.772 66.667 23.20 1.83 32.65 2.85
199 201 1.820581 CGCCGACCCCTCTTGATAA 59.179 57.895 0.00 0.00 0.00 1.75
207 209 0.830648 CCCTCTTGATAAGGTGCGGA 59.169 55.000 0.00 0.00 31.51 5.54
231 233 3.214123 CTCGTCACCGCCCCGATA 61.214 66.667 0.00 0.00 0.00 2.92
235 237 2.125961 GTCACCGCCCCGATAGTCT 61.126 63.158 0.00 0.00 0.00 3.24
240 242 1.096416 CCGCCCCGATAGTCTAGATC 58.904 60.000 0.00 0.00 0.00 2.75
245 247 2.085320 CCCGATAGTCTAGATCCCACG 58.915 57.143 0.00 0.00 0.00 4.94
246 248 2.552591 CCCGATAGTCTAGATCCCACGT 60.553 54.545 0.00 0.00 0.00 4.49
256 258 3.296709 ATCCCACGTGTGAGCGGAC 62.297 63.158 15.65 0.00 35.98 4.79
259 261 1.667830 CCACGTGTGAGCGGACAAT 60.668 57.895 15.65 0.00 35.98 2.71
262 264 2.870372 GTGTGAGCGGACAATGGC 59.130 61.111 0.00 0.00 0.00 4.40
270 272 1.748879 CGGACAATGGCGGGTGAAT 60.749 57.895 0.00 0.00 0.00 2.57
272 274 1.714899 GGACAATGGCGGGTGAATCG 61.715 60.000 0.00 0.00 0.00 3.34
278 280 2.125512 GCGGGTGAATCGAGCACT 60.126 61.111 17.41 0.00 36.53 4.40
294 296 3.874392 GCACTGGCTCCAACATTTATT 57.126 42.857 0.00 0.00 36.96 1.40
298 300 5.220931 GCACTGGCTCCAACATTTATTAGAG 60.221 44.000 0.00 0.00 36.96 2.43
349 351 2.528041 AAACCCAGACGAAGACACTC 57.472 50.000 0.00 0.00 0.00 3.51
351 353 1.249407 ACCCAGACGAAGACACTCTC 58.751 55.000 0.00 0.00 0.00 3.20
353 355 1.157585 CCAGACGAAGACACTCTCGA 58.842 55.000 0.00 0.00 0.00 4.04
356 358 0.179220 GACGAAGACACTCTCGACGG 60.179 60.000 0.00 0.00 0.00 4.79
361 363 3.251318 GACACTCTCGACGGTGCGT 62.251 63.158 11.49 0.00 45.10 5.24
405 408 3.545724 CGGAGGGGAACTAAACCAC 57.454 57.895 0.00 0.00 0.00 4.16
406 409 0.035725 CGGAGGGGAACTAAACCACC 60.036 60.000 0.00 0.00 0.00 4.61
407 410 1.369403 GGAGGGGAACTAAACCACCT 58.631 55.000 0.00 0.00 33.20 4.00
408 411 1.281287 GGAGGGGAACTAAACCACCTC 59.719 57.143 0.00 0.00 40.65 3.85
415 429 0.195096 ACTAAACCACCTCCCTCCCA 59.805 55.000 0.00 0.00 0.00 4.37
417 431 1.708551 CTAAACCACCTCCCTCCCAAA 59.291 52.381 0.00 0.00 0.00 3.28
421 435 1.301293 CACCTCCCTCCCAAAGCTC 59.699 63.158 0.00 0.00 0.00 4.09
425 439 1.919600 CTCCCTCCCAAAGCTCCAGG 61.920 65.000 0.00 0.00 0.00 4.45
431 445 1.305549 CCAAAGCTCCAGGGGCATT 60.306 57.895 15.81 4.58 0.00 3.56
460 474 1.854280 TGTTTTGTAGGGTTCAGGGGT 59.146 47.619 0.00 0.00 0.00 4.95
468 482 0.395724 GGGTTCAGGGGTGGCATTAG 60.396 60.000 0.00 0.00 0.00 1.73
478 492 3.628769 GGGGTGGCATTAGGTTATTTCCA 60.629 47.826 0.00 0.00 0.00 3.53
602 622 3.020647 TGGGCCCCACCGATCAAT 61.021 61.111 22.27 0.00 40.62 2.57
618 638 3.371097 AATCAGCGCCGTCGGATGT 62.371 57.895 17.49 0.00 35.95 3.06
760 800 1.410224 GCCCAAATCGATCCCCTTTCT 60.410 52.381 0.00 0.00 0.00 2.52
761 801 2.950418 GCCCAAATCGATCCCCTTTCTT 60.950 50.000 0.00 0.00 0.00 2.52
767 811 1.279025 CGATCCCCTTTCTTCCCCCA 61.279 60.000 0.00 0.00 0.00 4.96
775 819 0.909623 TTTCTTCCCCCACTCCGATC 59.090 55.000 0.00 0.00 0.00 3.69
776 820 0.981277 TTCTTCCCCCACTCCGATCC 60.981 60.000 0.00 0.00 0.00 3.36
777 821 2.762459 TTCCCCCACTCCGATCCG 60.762 66.667 0.00 0.00 0.00 4.18
877 921 2.494918 GTCCGTCCCACGATCTGG 59.505 66.667 0.00 4.67 46.05 3.86
881 925 2.052690 CGTCCCACGATCTGGTCCT 61.053 63.158 9.47 0.00 46.05 3.85
888 932 4.899239 GATCTGGTCCTGCCGCCG 62.899 72.222 0.00 0.00 41.21 6.46
947 1195 4.610714 GGCGGCGGAGGAGGATTC 62.611 72.222 9.78 0.00 0.00 2.52
948 1196 4.951963 GCGGCGGAGGAGGATTCG 62.952 72.222 9.78 0.00 0.00 3.34
949 1197 3.217017 CGGCGGAGGAGGATTCGA 61.217 66.667 0.00 0.00 0.00 3.71
950 1198 2.417936 GGCGGAGGAGGATTCGAC 59.582 66.667 0.00 0.00 0.00 4.20
951 1199 2.128507 GGCGGAGGAGGATTCGACT 61.129 63.158 0.00 0.00 0.00 4.18
952 1200 1.360911 GCGGAGGAGGATTCGACTC 59.639 63.158 0.00 0.00 0.00 3.36
1317 1606 1.079127 CATGTCGCCGAGGTCCTTT 60.079 57.895 0.00 0.00 0.00 3.11
1332 1621 0.834612 CCTTTGGGGCCGTATACAGA 59.165 55.000 3.32 0.00 0.00 3.41
1452 1756 2.991540 GCCAAGCTCGCCCCTTTT 60.992 61.111 0.00 0.00 0.00 2.27
1453 1757 2.964978 CCAAGCTCGCCCCTTTTG 59.035 61.111 0.00 0.00 0.00 2.44
1503 1810 1.446272 GTCCAGGGAGTTCGCTTCG 60.446 63.158 0.00 0.00 37.00 3.79
1527 1834 4.821589 GGGCTCCTGGAAGACGCG 62.822 72.222 3.53 3.53 34.07 6.01
1578 1885 4.719369 GCCGTGCTCGTCGTCCTT 62.719 66.667 7.47 0.00 35.01 3.36
1682 1992 4.181010 CCATGTCCGGAGCCTGGG 62.181 72.222 3.06 0.00 0.00 4.45
1698 2008 1.302511 GGGCTCGTTTCTTCTGGCA 60.303 57.895 0.00 0.00 0.00 4.92
1711 2021 3.610619 CTGGCATCACCGGCTGTCA 62.611 63.158 0.00 3.55 43.94 3.58
1712 2022 2.359850 GGCATCACCGGCTGTCAA 60.360 61.111 0.00 0.00 0.00 3.18
1717 2027 2.050836 ATCACCGGCTGTCAACACCA 62.051 55.000 0.00 0.00 0.00 4.17
1719 2029 2.203139 CCGGCTGTCAACACCACA 60.203 61.111 0.00 0.00 0.00 4.17
1735 2045 2.359354 CATTTGGGTCGCACGGGA 60.359 61.111 0.00 0.00 0.00 5.14
1736 2046 2.359478 ATTTGGGTCGCACGGGAC 60.359 61.111 5.72 5.72 36.18 4.46
1788 2098 3.367498 CCGTAAGCAGCTTCTCTTACAGT 60.367 47.826 12.07 0.00 42.75 3.55
1789 2099 3.854809 CGTAAGCAGCTTCTCTTACAGTC 59.145 47.826 12.07 4.47 42.75 3.51
1794 2104 7.411486 AAGCAGCTTCTCTTACAGTCTATAA 57.589 36.000 0.21 0.00 0.00 0.98
1796 2106 7.841956 AGCAGCTTCTCTTACAGTCTATAAAA 58.158 34.615 0.00 0.00 0.00 1.52
1810 2120 9.778741 ACAGTCTATAAAACTTCTGTTCATTCA 57.221 29.630 0.00 0.00 34.96 2.57
1872 2182 1.327303 TTGATGCGGGTGCTTTCTTT 58.673 45.000 0.00 0.00 43.34 2.52
1889 2199 6.401581 GCTTTCTTTCTGTATGTAGAGTGCAC 60.402 42.308 9.40 9.40 0.00 4.57
1990 2306 1.811679 CTTCTCGGCGCTTCCTTCC 60.812 63.158 7.64 0.00 0.00 3.46
2094 2410 3.186119 GAGGAGCTGAAGAAGAATCGTG 58.814 50.000 0.00 0.00 0.00 4.35
2119 2435 1.339610 CGAGATCATCTGGAGGTGGAC 59.660 57.143 0.00 0.00 0.00 4.02
2125 2441 0.415429 ATCTGGAGGTGGACTCTGGT 59.585 55.000 0.00 0.00 45.83 4.00
2169 2485 1.065926 CACACCTGCTGCTGGATCTTA 60.066 52.381 29.14 0.00 0.00 2.10
2272 2591 4.746361 CGAAGCTCGATGAGGCAT 57.254 55.556 0.00 0.00 43.74 4.40
2372 2691 0.040067 GACGGAACTGCAAAAGCCAG 60.040 55.000 0.00 0.00 36.41 4.85
2492 2811 4.838152 CGACGCCCATGGGACCAG 62.838 72.222 36.00 22.43 37.50 4.00
2569 2888 0.970937 TGGCTCTGTCCGAGGTTAGG 60.971 60.000 0.00 0.00 40.25 2.69
2606 2925 1.372128 CGCTGCAAAGCAAACCTCC 60.372 57.895 0.00 0.00 38.41 4.30
2647 2966 2.041265 TGGAGGGAAGAGGGAGCC 59.959 66.667 0.00 0.00 0.00 4.70
2725 3044 1.816224 GGTGTCACCAGAGTCTCTCTC 59.184 57.143 17.59 0.00 38.99 3.20
2752 3071 4.431809 CTTCAGAGCAGAGGTTCTATGTG 58.568 47.826 0.00 0.00 32.27 3.21
2767 3086 3.645975 GTGGTCAACCGGCACACG 61.646 66.667 0.00 0.00 43.80 4.49
2851 3170 3.306973 GGCTTTTGTTCAAAGAACTGCAC 59.693 43.478 10.79 0.00 44.40 4.57
2854 3173 5.063817 GCTTTTGTTCAAAGAACTGCACATT 59.936 36.000 10.79 0.00 44.40 2.71
2881 3200 1.821332 GGAGCGCAATTCTCAGGGG 60.821 63.158 11.47 0.00 32.38 4.79
2914 3233 0.478072 TTCCAGGTGTGCATGAGGTT 59.522 50.000 0.00 0.00 0.00 3.50
3016 3335 3.213402 CGGGCCCTCTCGAGAGAC 61.213 72.222 38.04 28.70 44.74 3.36
3166 3485 3.114065 CGAGAAGGACGCCTACAATAAC 58.886 50.000 0.00 0.00 31.13 1.89
3339 3661 1.927051 ATCCCTTGCCTAATCCCCTT 58.073 50.000 0.00 0.00 0.00 3.95
3341 3663 2.132686 TCCCTTGCCTAATCCCCTTAC 58.867 52.381 0.00 0.00 0.00 2.34
3381 3712 7.816031 CAGATATCCTTTGTTTTTGTGCATTCT 59.184 33.333 0.00 0.00 0.00 2.40
3567 3898 9.057089 GTATATTTAAAGCTCTGTAACATGCCT 57.943 33.333 0.00 0.00 0.00 4.75
3617 3954 1.663643 GGATTCGCTGTACGCAAATCA 59.336 47.619 18.35 0.00 43.23 2.57
3621 3958 1.658596 TCGCTGTACGCAAATCATGAC 59.341 47.619 0.00 0.00 43.23 3.06
3717 4055 4.192317 ACCTCATTATGACCGAAAAGAGC 58.808 43.478 0.00 0.00 0.00 4.09
3727 4065 2.616842 ACCGAAAAGAGCGAACATTGTT 59.383 40.909 0.63 0.63 0.00 2.83
3736 4074 1.800586 GCGAACATTGTTGAGCTCAGA 59.199 47.619 17.43 7.71 0.00 3.27
3759 4099 5.243981 AGATATAGCATGTCTGTTGGCATC 58.756 41.667 0.00 0.00 28.94 3.91
3765 4105 0.251297 TGTCTGTTGGCATCCCCTTG 60.251 55.000 0.00 0.00 0.00 3.61
3767 4107 2.283821 TGTTGGCATCCCCTTGGC 60.284 61.111 0.00 0.00 42.20 4.52
3790 4130 6.801575 GCTGTATATCTATTCTACCTCAGCC 58.198 44.000 0.00 0.00 38.66 4.85
3863 4203 0.184933 TAACAAGCCCTGCTGTTGGT 59.815 50.000 11.51 0.46 39.62 3.67
3968 4312 2.317371 TTATGCCTTGGCCTTTTCCA 57.683 45.000 3.32 0.00 0.00 3.53
3993 4337 4.626042 TGCCATTGGAACATTGTAACAAC 58.374 39.130 6.95 0.00 39.30 3.32
3994 4338 3.993736 GCCATTGGAACATTGTAACAACC 59.006 43.478 6.95 0.00 39.30 3.77
4020 4365 0.937304 CATTATGCCCGAACGGAGTG 59.063 55.000 15.07 0.00 45.00 3.51
4040 4385 4.957954 AGTGAACATCATTGTGCCCAATAT 59.042 37.500 0.00 0.00 39.28 1.28
4060 4405 9.681062 CCAATATATAGTATAACAACCCCCTTG 57.319 37.037 0.00 0.00 35.77 3.61
4095 4440 3.873910 TCTACCTTAGCATTCAGTTGCC 58.126 45.455 0.00 0.00 43.83 4.52
4130 4488 9.841295 TGACTTGTTAGGTATTTAAAACTCTGT 57.159 29.630 0.00 0.00 0.00 3.41
4140 4498 5.427036 TTTAAAACTCTGTAACAAGCCCG 57.573 39.130 0.00 0.00 0.00 6.13
4176 4534 8.825745 TGCCAACAAAATCTTTATTTGACTTTC 58.174 29.630 6.05 0.00 39.56 2.62
4245 4614 6.934645 CCACCCATGACTTTATAATACGTGAT 59.065 38.462 0.00 0.00 0.00 3.06
4334 4703 3.861840 TGCCTGAACATAGTAAGCAGAC 58.138 45.455 0.00 0.00 0.00 3.51
4336 4705 3.868077 GCCTGAACATAGTAAGCAGACAG 59.132 47.826 0.00 0.00 0.00 3.51
4406 4786 9.612879 AGCTGTATATATCTATCATGCCCTATT 57.387 33.333 0.00 0.00 0.00 1.73
4416 4798 7.693132 TCTATCATGCCCTATTTTATTCAGCT 58.307 34.615 0.00 0.00 0.00 4.24
4472 4866 2.614779 ACTCATCATTCTCGTGCTGTG 58.385 47.619 0.00 0.00 0.00 3.66
4473 4867 1.326852 CTCATCATTCTCGTGCTGTGC 59.673 52.381 0.00 0.00 0.00 4.57
4474 4868 1.081094 CATCATTCTCGTGCTGTGCA 58.919 50.000 0.00 0.00 35.60 4.57
4475 4869 1.669265 CATCATTCTCGTGCTGTGCAT 59.331 47.619 0.00 0.00 41.91 3.96
4476 4870 1.362768 TCATTCTCGTGCTGTGCATC 58.637 50.000 0.00 0.00 41.91 3.91
4477 4871 0.376152 CATTCTCGTGCTGTGCATCC 59.624 55.000 0.00 0.00 41.91 3.51
4478 4872 0.745845 ATTCTCGTGCTGTGCATCCC 60.746 55.000 0.00 0.00 41.91 3.85
4479 4873 3.190849 CTCGTGCTGTGCATCCCG 61.191 66.667 0.00 0.00 41.91 5.14
4480 4874 3.939837 CTCGTGCTGTGCATCCCGT 62.940 63.158 0.00 0.00 41.91 5.28
4481 4875 3.049674 CGTGCTGTGCATCCCGTT 61.050 61.111 0.00 0.00 41.91 4.44
4482 4876 2.562912 GTGCTGTGCATCCCGTTG 59.437 61.111 0.00 0.00 41.91 4.10
4483 4877 2.112928 TGCTGTGCATCCCGTTGT 59.887 55.556 0.00 0.00 31.71 3.32
4491 4885 2.034066 ATCCCGTTGTGTGCAGGG 59.966 61.111 0.00 0.00 45.10 4.45
4709 5103 2.052690 GCCTCGACTAGCCCTGTGA 61.053 63.158 0.00 0.00 0.00 3.58
4734 5128 4.439305 TTTTTGCTCCTTGATTGATCCG 57.561 40.909 0.00 0.00 0.00 4.18
4735 5129 1.382522 TTGCTCCTTGATTGATCCGC 58.617 50.000 0.00 0.00 0.00 5.54
4736 5130 0.464373 TGCTCCTTGATTGATCCGCC 60.464 55.000 0.00 0.00 0.00 6.13
4737 5131 1.502163 GCTCCTTGATTGATCCGCCG 61.502 60.000 0.00 0.00 0.00 6.46
4738 5132 1.502163 CTCCTTGATTGATCCGCCGC 61.502 60.000 0.00 0.00 0.00 6.53
4739 5133 1.819208 CCTTGATTGATCCGCCGCA 60.819 57.895 0.00 0.00 0.00 5.69
4775 5169 4.697352 GTGATATAATTGGGCTAGGCTGTG 59.303 45.833 16.80 0.00 0.00 3.66
4776 5170 4.350816 TGATATAATTGGGCTAGGCTGTGT 59.649 41.667 16.80 2.53 0.00 3.72
4786 5180 2.740055 GGCTGTGTGAGGCTGTCG 60.740 66.667 0.00 0.00 44.09 4.35
4810 5204 0.494551 TTTGTACCCCCTCCTCTCCA 59.505 55.000 0.00 0.00 0.00 3.86
4858 5252 5.923684 GCGAAGAAGAAGAAGAAGAAGAAGA 59.076 40.000 0.00 0.00 0.00 2.87
4859 5253 6.422400 GCGAAGAAGAAGAAGAAGAAGAAGAA 59.578 38.462 0.00 0.00 0.00 2.52
4860 5254 7.359181 GCGAAGAAGAAGAAGAAGAAGAAGAAG 60.359 40.741 0.00 0.00 0.00 2.85
4884 5302 4.182339 GGAGTCGGAAGAAGTGTAATTCC 58.818 47.826 0.00 0.00 45.01 3.01
4921 5339 9.149225 GATAGTTTGGTTAGCTAGATGATGATG 57.851 37.037 0.00 0.00 0.00 3.07
4928 5346 6.126825 GGTTAGCTAGATGATGATGGATGGAT 60.127 42.308 0.00 0.00 0.00 3.41
4933 5351 5.578157 AGATGATGATGGATGGATTCACA 57.422 39.130 0.00 0.00 0.00 3.58
4936 5354 6.434340 AGATGATGATGGATGGATTCACAATG 59.566 38.462 0.00 0.00 0.00 2.82
4983 5401 1.522668 CGCCCATGTTTTGACAGAGA 58.477 50.000 0.00 0.00 0.00 3.10
5079 5512 0.322277 CTGATGACAGTGGCTTGCCT 60.322 55.000 13.18 0.00 39.11 4.75
5081 5514 1.251251 GATGACAGTGGCTTGCCTTT 58.749 50.000 13.18 0.00 0.00 3.11
5083 5516 1.032014 TGACAGTGGCTTGCCTTTTC 58.968 50.000 13.18 4.90 0.00 2.29
5084 5517 0.315251 GACAGTGGCTTGCCTTTTCC 59.685 55.000 13.18 0.00 0.00 3.13
5087 5520 1.836604 GTGGCTTGCCTTTTCCCCA 60.837 57.895 13.18 0.00 0.00 4.96
5100 5533 3.628832 TTTCCCCAGAAAAATCCCAGT 57.371 42.857 0.00 0.00 39.05 4.00
5109 5542 6.183360 CCCAGAAAAATCCCAGTATGAATGAC 60.183 42.308 0.00 0.00 39.69 3.06
5110 5543 6.183360 CCAGAAAAATCCCAGTATGAATGACC 60.183 42.308 0.00 0.00 39.69 4.02
5111 5544 6.604795 CAGAAAAATCCCAGTATGAATGACCT 59.395 38.462 0.00 0.00 39.69 3.85
5112 5545 6.604795 AGAAAAATCCCAGTATGAATGACCTG 59.395 38.462 0.00 0.00 39.69 4.00
5113 5546 5.715439 AAATCCCAGTATGAATGACCTGA 57.285 39.130 0.00 0.00 39.69 3.86
5114 5547 5.919348 AATCCCAGTATGAATGACCTGAT 57.081 39.130 0.00 0.00 39.69 2.90
5115 5548 4.694760 TCCCAGTATGAATGACCTGATG 57.305 45.455 0.00 0.00 39.69 3.07
5116 5549 4.040047 TCCCAGTATGAATGACCTGATGT 58.960 43.478 0.00 0.00 39.69 3.06
5117 5550 4.132336 CCCAGTATGAATGACCTGATGTG 58.868 47.826 0.00 0.00 39.69 3.21
5118 5551 3.562973 CCAGTATGAATGACCTGATGTGC 59.437 47.826 0.00 0.00 39.69 4.57
5119 5552 4.449131 CAGTATGAATGACCTGATGTGCT 58.551 43.478 0.00 0.00 39.69 4.40
5120 5553 4.272748 CAGTATGAATGACCTGATGTGCTG 59.727 45.833 0.00 0.00 39.69 4.41
5121 5554 2.865119 TGAATGACCTGATGTGCTGT 57.135 45.000 0.00 0.00 0.00 4.40
5122 5555 3.979101 TGAATGACCTGATGTGCTGTA 57.021 42.857 0.00 0.00 0.00 2.74
5123 5556 3.865446 TGAATGACCTGATGTGCTGTAG 58.135 45.455 0.00 0.00 0.00 2.74
5124 5557 2.322355 ATGACCTGATGTGCTGTAGC 57.678 50.000 0.00 0.00 42.50 3.58
5125 5558 1.269958 TGACCTGATGTGCTGTAGCT 58.730 50.000 5.38 0.00 42.66 3.32
5129 5562 2.567169 ACCTGATGTGCTGTAGCTTGTA 59.433 45.455 5.38 0.00 42.66 2.41
5130 5563 2.932614 CCTGATGTGCTGTAGCTTGTAC 59.067 50.000 5.38 0.00 42.66 2.90
5131 5564 3.368843 CCTGATGTGCTGTAGCTTGTACT 60.369 47.826 5.38 0.00 42.66 2.73
5132 5565 4.142160 CCTGATGTGCTGTAGCTTGTACTA 60.142 45.833 5.38 0.00 42.66 1.82
5133 5566 4.744570 TGATGTGCTGTAGCTTGTACTAC 58.255 43.478 5.38 0.00 42.41 2.73
5140 5690 7.137426 GTGCTGTAGCTTGTACTACGTAATAT 58.863 38.462 5.38 0.00 44.55 1.28
5166 5716 3.568538 CAACTAGCATCTTGTTGGTTGC 58.431 45.455 11.45 0.00 41.30 4.17
5168 5718 2.816087 ACTAGCATCTTGTTGGTTGCTG 59.184 45.455 6.53 0.38 44.65 4.41
5169 5719 1.696063 AGCATCTTGTTGGTTGCTGT 58.304 45.000 0.00 0.00 43.44 4.40
5170 5720 1.610522 AGCATCTTGTTGGTTGCTGTC 59.389 47.619 0.00 0.00 43.44 3.51
5172 5722 2.351157 GCATCTTGTTGGTTGCTGTCTC 60.351 50.000 0.00 0.00 32.41 3.36
5174 5724 0.954452 CTTGTTGGTTGCTGTCTCCC 59.046 55.000 0.00 0.00 0.00 4.30
5175 5725 0.550914 TTGTTGGTTGCTGTCTCCCT 59.449 50.000 0.00 0.00 0.00 4.20
5176 5726 0.550914 TGTTGGTTGCTGTCTCCCTT 59.449 50.000 0.00 0.00 0.00 3.95
5180 5730 1.214175 TGGTTGCTGTCTCCCTTTTGA 59.786 47.619 0.00 0.00 0.00 2.69
5181 5731 2.158475 TGGTTGCTGTCTCCCTTTTGAT 60.158 45.455 0.00 0.00 0.00 2.57
5182 5732 2.489722 GGTTGCTGTCTCCCTTTTGATC 59.510 50.000 0.00 0.00 0.00 2.92
5184 5734 3.726557 TGCTGTCTCCCTTTTGATCAT 57.273 42.857 0.00 0.00 0.00 2.45
5185 5735 4.038271 TGCTGTCTCCCTTTTGATCATT 57.962 40.909 0.00 0.00 0.00 2.57
5187 5737 4.460382 TGCTGTCTCCCTTTTGATCATTTC 59.540 41.667 0.00 0.00 0.00 2.17
5188 5738 4.460382 GCTGTCTCCCTTTTGATCATTTCA 59.540 41.667 0.00 0.00 0.00 2.69
5191 5741 7.014038 GCTGTCTCCCTTTTGATCATTTCATAT 59.986 37.037 0.00 0.00 33.34 1.78
5192 5742 8.827832 TGTCTCCCTTTTGATCATTTCATATT 57.172 30.769 0.00 0.00 33.34 1.28
5193 5743 8.689061 TGTCTCCCTTTTGATCATTTCATATTG 58.311 33.333 0.00 0.00 33.34 1.90
5194 5744 8.139989 GTCTCCCTTTTGATCATTTCATATTGG 58.860 37.037 0.00 0.00 33.34 3.16
5198 5774 8.369424 CCCTTTTGATCATTTCATATTGGCATA 58.631 33.333 0.00 0.00 33.34 3.14
5214 5790 5.816449 TGGCATATGTATATTTGGATGCG 57.184 39.130 4.29 0.00 40.42 4.73
5215 5791 5.495640 TGGCATATGTATATTTGGATGCGA 58.504 37.500 4.29 0.00 40.42 5.10
5217 5793 5.504665 GGCATATGTATATTTGGATGCGAGC 60.505 44.000 4.29 0.00 40.42 5.03
5220 5796 5.618056 ATGTATATTTGGATGCGAGCTTG 57.382 39.130 0.00 0.00 0.00 4.01
5221 5797 4.702831 TGTATATTTGGATGCGAGCTTGA 58.297 39.130 4.70 0.00 0.00 3.02
5222 5798 5.308014 TGTATATTTGGATGCGAGCTTGAT 58.692 37.500 4.70 0.00 0.00 2.57
5224 5800 6.934083 TGTATATTTGGATGCGAGCTTGATTA 59.066 34.615 4.70 0.00 0.00 1.75
5225 5801 7.607607 TGTATATTTGGATGCGAGCTTGATTAT 59.392 33.333 4.70 0.00 0.00 1.28
5226 5802 4.818534 TTTGGATGCGAGCTTGATTATC 57.181 40.909 4.70 5.06 0.00 1.75
5227 5803 2.771089 TGGATGCGAGCTTGATTATCC 58.229 47.619 18.46 18.46 35.72 2.59
5228 5804 2.369860 TGGATGCGAGCTTGATTATCCT 59.630 45.455 22.55 0.00 36.06 3.24
5230 5806 3.817647 GGATGCGAGCTTGATTATCCTTT 59.182 43.478 18.20 0.00 33.12 3.11
5231 5807 4.276926 GGATGCGAGCTTGATTATCCTTTT 59.723 41.667 18.20 0.00 33.12 2.27
5232 5808 4.621068 TGCGAGCTTGATTATCCTTTTG 57.379 40.909 4.70 0.00 0.00 2.44
5233 5809 4.260985 TGCGAGCTTGATTATCCTTTTGA 58.739 39.130 4.70 0.00 0.00 2.69
5234 5810 4.883585 TGCGAGCTTGATTATCCTTTTGAT 59.116 37.500 4.70 0.00 37.49 2.57
5235 5811 5.357878 TGCGAGCTTGATTATCCTTTTGATT 59.642 36.000 4.70 0.00 34.76 2.57
5236 5812 6.542005 TGCGAGCTTGATTATCCTTTTGATTA 59.458 34.615 4.70 0.00 34.76 1.75
5237 5813 7.229306 TGCGAGCTTGATTATCCTTTTGATTAT 59.771 33.333 4.70 0.00 34.76 1.28
5238 5814 7.748241 GCGAGCTTGATTATCCTTTTGATTATC 59.252 37.037 4.70 0.00 39.09 1.75
5239 5815 8.233190 CGAGCTTGATTATCCTTTTGATTATCC 58.767 37.037 0.00 0.00 38.27 2.59
5240 5816 9.294614 GAGCTTGATTATCCTTTTGATTATCCT 57.705 33.333 0.00 0.00 38.27 3.24
5241 5817 9.075678 AGCTTGATTATCCTTTTGATTATCCTG 57.924 33.333 0.00 0.00 38.27 3.86
5245 5821 7.725397 TGATTATCCTTTTGATTATCCTGTGGG 59.275 37.037 0.00 0.00 38.27 4.61
5246 5822 4.249638 TCCTTTTGATTATCCTGTGGGG 57.750 45.455 0.00 0.00 0.00 4.96
5248 5824 2.452600 TTTGATTATCCTGTGGGGGC 57.547 50.000 0.00 0.00 35.33 5.80
5249 5825 1.607225 TTGATTATCCTGTGGGGGCT 58.393 50.000 0.00 0.00 35.33 5.19
5251 5827 1.929494 TGATTATCCTGTGGGGGCTTT 59.071 47.619 0.00 0.00 35.33 3.51
5252 5828 2.314549 TGATTATCCTGTGGGGGCTTTT 59.685 45.455 0.00 0.00 35.33 2.27
5253 5829 2.230130 TTATCCTGTGGGGGCTTTTG 57.770 50.000 0.00 0.00 35.33 2.44
5254 5830 1.377690 TATCCTGTGGGGGCTTTTGA 58.622 50.000 0.00 0.00 35.33 2.69
5257 5833 0.251742 CCTGTGGGGGCTTTTGATCA 60.252 55.000 0.00 0.00 0.00 2.92
5258 5834 1.620524 CCTGTGGGGGCTTTTGATCAT 60.621 52.381 0.00 0.00 0.00 2.45
5259 5835 2.181975 CTGTGGGGGCTTTTGATCATT 58.818 47.619 0.00 0.00 0.00 2.57
5261 5837 2.566724 TGTGGGGGCTTTTGATCATTTC 59.433 45.455 0.00 0.00 0.00 2.17
5262 5838 2.566724 GTGGGGGCTTTTGATCATTTCA 59.433 45.455 0.00 0.00 0.00 2.69
5263 5839 3.198417 GTGGGGGCTTTTGATCATTTCAT 59.802 43.478 0.00 0.00 33.34 2.57
5265 5841 5.070847 GTGGGGGCTTTTGATCATTTCATAT 59.929 40.000 0.00 0.00 33.34 1.78
5266 5842 5.666718 TGGGGGCTTTTGATCATTTCATATT 59.333 36.000 0.00 0.00 33.34 1.28
5268 5844 5.922544 GGGGCTTTTGATCATTTCATATTCG 59.077 40.000 0.00 0.00 33.34 3.34
5269 5845 5.403466 GGGCTTTTGATCATTTCATATTCGC 59.597 40.000 0.00 0.00 33.34 4.70
5270 5846 5.978919 GGCTTTTGATCATTTCATATTCGCA 59.021 36.000 0.00 0.00 33.34 5.10
5271 5847 6.643770 GGCTTTTGATCATTTCATATTCGCAT 59.356 34.615 0.00 0.00 33.34 4.73
5272 5848 7.809331 GGCTTTTGATCATTTCATATTCGCATA 59.191 33.333 0.00 0.00 33.34 3.14
5273 5849 9.350357 GCTTTTGATCATTTCATATTCGCATAT 57.650 29.630 0.00 0.00 33.34 1.78
5275 5851 8.677871 TTTGATCATTTCATATTCGCATATGC 57.322 30.769 18.08 18.08 41.55 3.14
5276 5852 7.380431 TGATCATTTCATATTCGCATATGCA 57.620 32.000 26.52 9.36 41.55 3.96
5281 6096 9.724839 TCATTTCATATTCGCATATGCATATTG 57.275 29.630 26.52 16.05 41.55 1.90
5294 6109 1.815003 GCATATTGGGCATGGCTCTAC 59.185 52.381 19.78 2.57 0.00 2.59
5295 6110 2.079158 CATATTGGGCATGGCTCTACG 58.921 52.381 19.78 0.16 0.00 3.51
5300 6116 1.488812 TGGGCATGGCTCTACGTATTT 59.511 47.619 19.78 0.00 0.00 1.40
5316 6132 6.604735 ACGTATTTCACAGCTTGATTATCC 57.395 37.500 0.00 0.00 32.84 2.59
5317 6133 6.349300 ACGTATTTCACAGCTTGATTATCCT 58.651 36.000 0.00 0.00 32.84 3.24
5325 6141 2.686915 AGCTTGATTATCCTGTTGCTGC 59.313 45.455 0.00 0.00 0.00 5.25
5332 6148 2.825861 ATCCTGTTGCTGCCTTTTTG 57.174 45.000 0.00 0.00 0.00 2.44
5336 6152 2.102252 CCTGTTGCTGCCTTTTTGGTTA 59.898 45.455 0.00 0.00 38.35 2.85
5338 6154 4.379652 CTGTTGCTGCCTTTTTGGTTATT 58.620 39.130 0.00 0.00 38.35 1.40
5340 6156 5.189180 TGTTGCTGCCTTTTTGGTTATTTT 58.811 33.333 0.00 0.00 38.35 1.82
5341 6157 6.349300 TGTTGCTGCCTTTTTGGTTATTTTA 58.651 32.000 0.00 0.00 38.35 1.52
5342 6158 6.995091 TGTTGCTGCCTTTTTGGTTATTTTAT 59.005 30.769 0.00 0.00 38.35 1.40
5343 6159 8.150945 TGTTGCTGCCTTTTTGGTTATTTTATA 58.849 29.630 0.00 0.00 38.35 0.98
5344 6160 8.994170 GTTGCTGCCTTTTTGGTTATTTTATAA 58.006 29.630 0.00 0.00 38.35 0.98
5345 6161 9.561069 TTGCTGCCTTTTTGGTTATTTTATAAA 57.439 25.926 0.00 0.00 38.35 1.40
5378 6194 3.254411 GGAGGAAAAGAGGAGTTTTGCAG 59.746 47.826 3.86 0.00 39.49 4.41
5379 6195 4.137543 GAGGAAAAGAGGAGTTTTGCAGA 58.862 43.478 3.86 0.00 39.49 4.26
5398 6217 5.473039 GCAGATGCAAAGATGGTAACTTTT 58.527 37.500 0.00 0.00 41.59 2.27
5399 6218 5.928264 GCAGATGCAAAGATGGTAACTTTTT 59.072 36.000 0.00 0.00 41.59 1.94
5440 6259 3.206211 GAGGAGGAGCGAGCGATGG 62.206 68.421 0.00 0.00 0.00 3.51
5441 6260 4.292178 GGAGGAGCGAGCGATGGG 62.292 72.222 0.00 0.00 0.00 4.00
5442 6261 3.219928 GAGGAGCGAGCGATGGGA 61.220 66.667 0.00 0.00 0.00 4.37
5443 6262 2.522923 AGGAGCGAGCGATGGGAT 60.523 61.111 0.00 0.00 0.00 3.85
5444 6263 2.093537 GAGGAGCGAGCGATGGGATT 62.094 60.000 0.00 0.00 0.00 3.01
5445 6264 1.958205 GGAGCGAGCGATGGGATTG 60.958 63.158 0.00 0.00 0.00 2.67
5446 6265 1.068083 GAGCGAGCGATGGGATTGA 59.932 57.895 0.00 0.00 0.00 2.57
5447 6266 0.943359 GAGCGAGCGATGGGATTGAG 60.943 60.000 0.00 0.00 0.00 3.02
5448 6267 1.068083 GCGAGCGATGGGATTGAGA 59.932 57.895 0.00 0.00 0.00 3.27
5449 6268 0.320247 GCGAGCGATGGGATTGAGAT 60.320 55.000 0.00 0.00 0.00 2.75
5450 6269 1.875576 GCGAGCGATGGGATTGAGATT 60.876 52.381 0.00 0.00 0.00 2.40
5451 6270 1.797046 CGAGCGATGGGATTGAGATTG 59.203 52.381 0.00 0.00 0.00 2.67
5452 6271 2.546584 CGAGCGATGGGATTGAGATTGA 60.547 50.000 0.00 0.00 0.00 2.57
5453 6272 3.065655 GAGCGATGGGATTGAGATTGAG 58.934 50.000 0.00 0.00 0.00 3.02
5454 6273 2.702478 AGCGATGGGATTGAGATTGAGA 59.298 45.455 0.00 0.00 0.00 3.27
5455 6274 3.327172 AGCGATGGGATTGAGATTGAGAT 59.673 43.478 0.00 0.00 0.00 2.75
5456 6275 4.070716 GCGATGGGATTGAGATTGAGATT 58.929 43.478 0.00 0.00 0.00 2.40
5457 6276 4.083431 GCGATGGGATTGAGATTGAGATTG 60.083 45.833 0.00 0.00 0.00 2.67
5458 6277 5.303165 CGATGGGATTGAGATTGAGATTGA 58.697 41.667 0.00 0.00 0.00 2.57
5459 6278 5.408909 CGATGGGATTGAGATTGAGATTGAG 59.591 44.000 0.00 0.00 0.00 3.02
5460 6279 5.963214 TGGGATTGAGATTGAGATTGAGA 57.037 39.130 0.00 0.00 0.00 3.27
5461 6280 6.511017 TGGGATTGAGATTGAGATTGAGAT 57.489 37.500 0.00 0.00 0.00 2.75
5462 6281 6.907961 TGGGATTGAGATTGAGATTGAGATT 58.092 36.000 0.00 0.00 0.00 2.40
5463 6282 6.771267 TGGGATTGAGATTGAGATTGAGATTG 59.229 38.462 0.00 0.00 0.00 2.67
5464 6283 6.996879 GGGATTGAGATTGAGATTGAGATTGA 59.003 38.462 0.00 0.00 0.00 2.57
5465 6284 7.173562 GGGATTGAGATTGAGATTGAGATTGAG 59.826 40.741 0.00 0.00 0.00 3.02
5466 6285 7.932491 GGATTGAGATTGAGATTGAGATTGAGA 59.068 37.037 0.00 0.00 0.00 3.27
5467 6286 9.496873 GATTGAGATTGAGATTGAGATTGAGAT 57.503 33.333 0.00 0.00 0.00 2.75
5468 6287 9.854668 ATTGAGATTGAGATTGAGATTGAGATT 57.145 29.630 0.00 0.00 0.00 2.40
5469 6288 8.664211 TGAGATTGAGATTGAGATTGAGATTG 57.336 34.615 0.00 0.00 0.00 2.67
5488 6307 5.305128 AGATTGAGATGATCCTTCCAGAGTC 59.695 44.000 0.00 0.00 0.00 3.36
5489 6308 3.303938 TGAGATGATCCTTCCAGAGTCC 58.696 50.000 0.00 0.00 0.00 3.85
5492 6311 2.630889 TGATCCTTCCAGAGTCCAGT 57.369 50.000 0.00 0.00 0.00 4.00
5493 6312 2.461695 TGATCCTTCCAGAGTCCAGTC 58.538 52.381 0.00 0.00 0.00 3.51
5494 6313 2.043664 TGATCCTTCCAGAGTCCAGTCT 59.956 50.000 0.00 0.00 0.00 3.24
5495 6314 2.223803 TCCTTCCAGAGTCCAGTCTC 57.776 55.000 0.00 0.00 34.96 3.36
5496 6315 1.190643 CCTTCCAGAGTCCAGTCTCC 58.809 60.000 0.00 0.00 35.28 3.71
5497 6316 1.551099 CCTTCCAGAGTCCAGTCTCCA 60.551 57.143 0.00 0.00 35.28 3.86
5499 6318 1.076438 TCCAGAGTCCAGTCTCCAGA 58.924 55.000 0.00 0.00 35.28 3.86
5500 6319 1.181786 CCAGAGTCCAGTCTCCAGAC 58.818 60.000 0.00 0.00 45.08 3.51
5509 6328 3.180984 GTCTCCAGACGACACACAC 57.819 57.895 0.00 0.00 35.12 3.82
5510 6329 0.384309 GTCTCCAGACGACACACACA 59.616 55.000 0.00 0.00 35.12 3.72
5511 6330 0.668535 TCTCCAGACGACACACACAG 59.331 55.000 0.00 0.00 0.00 3.66
5512 6331 0.668535 CTCCAGACGACACACACAGA 59.331 55.000 0.00 0.00 0.00 3.41
5513 6332 1.067060 CTCCAGACGACACACACAGAA 59.933 52.381 0.00 0.00 0.00 3.02
5514 6333 1.478916 TCCAGACGACACACACAGAAA 59.521 47.619 0.00 0.00 0.00 2.52
5515 6334 2.102420 TCCAGACGACACACACAGAAAT 59.898 45.455 0.00 0.00 0.00 2.17
5516 6335 2.221749 CCAGACGACACACACAGAAATG 59.778 50.000 0.00 0.00 0.00 2.32
5517 6336 2.221749 CAGACGACACACACAGAAATGG 59.778 50.000 0.00 0.00 0.00 3.16
5518 6337 2.102420 AGACGACACACACAGAAATGGA 59.898 45.455 0.00 0.00 0.00 3.41
5519 6338 2.476619 GACGACACACACAGAAATGGAG 59.523 50.000 0.00 0.00 0.00 3.86
5520 6339 2.102420 ACGACACACACAGAAATGGAGA 59.898 45.455 0.00 0.00 0.00 3.71
5521 6340 2.733552 CGACACACACAGAAATGGAGAG 59.266 50.000 0.00 0.00 0.00 3.20
5522 6341 3.070018 GACACACACAGAAATGGAGAGG 58.930 50.000 0.00 0.00 0.00 3.69
5523 6342 2.439507 ACACACACAGAAATGGAGAGGT 59.560 45.455 0.00 0.00 0.00 3.85
5524 6343 2.810274 CACACACAGAAATGGAGAGGTG 59.190 50.000 0.00 0.00 0.00 4.00
5546 6365 4.974438 AGGCGGAGGTGTTCCCCA 62.974 66.667 0.00 0.00 43.63 4.96
5547 6366 3.728373 GGCGGAGGTGTTCCCCAT 61.728 66.667 0.00 0.00 43.63 4.00
5549 6368 2.590092 CGGAGGTGTTCCCCATCC 59.410 66.667 0.00 0.00 43.63 3.51
5550 6369 1.995626 CGGAGGTGTTCCCCATCCT 60.996 63.158 0.00 0.00 43.63 3.24
5567 6398 0.178947 CCTCCTCTCGCCTTATCCCT 60.179 60.000 0.00 0.00 0.00 4.20
5571 6402 1.253100 CTCTCGCCTTATCCCTCTCC 58.747 60.000 0.00 0.00 0.00 3.71
5572 6403 0.178958 TCTCGCCTTATCCCTCTCCC 60.179 60.000 0.00 0.00 0.00 4.30
5573 6404 1.152312 TCGCCTTATCCCTCTCCCC 60.152 63.158 0.00 0.00 0.00 4.81
5574 6405 2.217745 CGCCTTATCCCTCTCCCCC 61.218 68.421 0.00 0.00 0.00 5.40
5697 6534 3.596799 TCCGTCTCCAGGGGTGGA 61.597 66.667 0.00 0.00 36.40 4.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 1.298157 TATTATCGCATGCTGCCCGC 61.298 55.000 17.13 0.00 41.12 6.13
8 9 0.443869 GTATTATCGCATGCTGCCCG 59.556 55.000 17.13 0.00 41.12 6.13
9 10 1.734465 GAGTATTATCGCATGCTGCCC 59.266 52.381 17.13 0.00 41.12 5.36
10 11 1.391485 CGAGTATTATCGCATGCTGCC 59.609 52.381 17.13 0.00 41.12 4.85
11 12 2.061773 ACGAGTATTATCGCATGCTGC 58.938 47.619 17.13 0.00 46.60 5.25
12 13 4.226761 TGTACGAGTATTATCGCATGCTG 58.773 43.478 17.13 9.63 46.60 4.41
13 14 4.499037 TGTACGAGTATTATCGCATGCT 57.501 40.909 17.13 0.00 46.60 3.79
14 15 5.570262 TTTGTACGAGTATTATCGCATGC 57.430 39.130 7.91 7.91 46.60 4.06
15 16 8.576281 GTCTATTTGTACGAGTATTATCGCATG 58.424 37.037 0.00 0.00 46.60 4.06
16 17 7.754027 GGTCTATTTGTACGAGTATTATCGCAT 59.246 37.037 0.00 0.00 46.60 4.73
17 18 7.080099 GGTCTATTTGTACGAGTATTATCGCA 58.920 38.462 0.00 0.00 46.60 5.10
18 19 6.248001 CGGTCTATTTGTACGAGTATTATCGC 59.752 42.308 0.00 0.00 46.60 4.58
30 31 6.146510 TGAAACATGTGTCGGTCTATTTGTAC 59.853 38.462 11.43 0.00 0.00 2.90
59 60 2.631062 AGTTGTTGTACAGTCCGGATCA 59.369 45.455 7.81 0.00 0.00 2.92
64 65 4.116961 TGAGAAAGTTGTTGTACAGTCCG 58.883 43.478 0.00 0.00 0.00 4.79
67 68 7.681939 TCTTTTGAGAAAGTTGTTGTACAGT 57.318 32.000 0.00 0.00 42.32 3.55
84 85 9.672086 CGAATAGTTGTGGTTTTATTCTTTTGA 57.328 29.630 0.00 0.00 32.81 2.69
94 95 5.995282 TCACTGATCGAATAGTTGTGGTTTT 59.005 36.000 2.52 0.00 0.00 2.43
98 99 5.351458 TCATCACTGATCGAATAGTTGTGG 58.649 41.667 2.52 0.00 0.00 4.17
100 101 5.046529 GCTCATCACTGATCGAATAGTTGT 58.953 41.667 2.52 0.00 0.00 3.32
101 102 5.288015 AGCTCATCACTGATCGAATAGTTG 58.712 41.667 2.52 1.23 0.00 3.16
102 103 5.528043 AGCTCATCACTGATCGAATAGTT 57.472 39.130 2.52 0.00 0.00 2.24
103 104 6.641169 TTAGCTCATCACTGATCGAATAGT 57.359 37.500 0.00 0.00 0.00 2.12
104 105 8.531622 AAATTAGCTCATCACTGATCGAATAG 57.468 34.615 0.00 0.00 27.41 1.73
105 106 9.981114 TTAAATTAGCTCATCACTGATCGAATA 57.019 29.630 0.00 0.00 27.41 1.75
106 107 8.893219 TTAAATTAGCTCATCACTGATCGAAT 57.107 30.769 0.00 0.00 28.16 3.34
107 108 8.893219 ATTAAATTAGCTCATCACTGATCGAA 57.107 30.769 0.00 0.00 0.00 3.71
108 109 9.631452 CTATTAAATTAGCTCATCACTGATCGA 57.369 33.333 0.00 0.00 0.00 3.59
109 110 9.631452 TCTATTAAATTAGCTCATCACTGATCG 57.369 33.333 0.00 0.00 0.00 3.69
114 115 9.416794 CGATGTCTATTAAATTAGCTCATCACT 57.583 33.333 0.00 0.00 34.19 3.41
115 116 8.165428 GCGATGTCTATTAAATTAGCTCATCAC 58.835 37.037 0.00 7.16 34.19 3.06
116 117 7.331934 GGCGATGTCTATTAAATTAGCTCATCA 59.668 37.037 0.00 0.00 34.19 3.07
117 118 7.331934 TGGCGATGTCTATTAAATTAGCTCATC 59.668 37.037 0.00 0.00 32.91 2.92
118 119 7.161404 TGGCGATGTCTATTAAATTAGCTCAT 58.839 34.615 0.00 0.00 0.00 2.90
119 120 6.521162 TGGCGATGTCTATTAAATTAGCTCA 58.479 36.000 0.00 0.00 0.00 4.26
120 121 6.868864 TCTGGCGATGTCTATTAAATTAGCTC 59.131 38.462 0.00 0.00 0.00 4.09
121 122 6.759272 TCTGGCGATGTCTATTAAATTAGCT 58.241 36.000 0.00 0.00 0.00 3.32
122 123 7.602517 ATCTGGCGATGTCTATTAAATTAGC 57.397 36.000 0.00 0.00 0.00 3.09
123 124 8.376203 CGAATCTGGCGATGTCTATTAAATTAG 58.624 37.037 0.00 0.00 0.00 1.73
124 125 7.870954 ACGAATCTGGCGATGTCTATTAAATTA 59.129 33.333 0.00 0.00 0.00 1.40
125 126 6.706270 ACGAATCTGGCGATGTCTATTAAATT 59.294 34.615 0.00 0.00 0.00 1.82
126 127 6.223852 ACGAATCTGGCGATGTCTATTAAAT 58.776 36.000 0.00 0.00 0.00 1.40
127 128 5.597806 ACGAATCTGGCGATGTCTATTAAA 58.402 37.500 0.00 0.00 0.00 1.52
128 129 5.196341 ACGAATCTGGCGATGTCTATTAA 57.804 39.130 0.00 0.00 0.00 1.40
129 130 4.848562 ACGAATCTGGCGATGTCTATTA 57.151 40.909 0.00 0.00 0.00 0.98
130 131 3.735237 ACGAATCTGGCGATGTCTATT 57.265 42.857 0.00 0.00 0.00 1.73
131 132 3.735237 AACGAATCTGGCGATGTCTAT 57.265 42.857 0.00 0.00 0.00 1.98
132 133 3.520290 AAACGAATCTGGCGATGTCTA 57.480 42.857 0.00 0.00 0.00 2.59
133 134 2.386661 AAACGAATCTGGCGATGTCT 57.613 45.000 0.00 0.00 0.00 3.41
134 135 2.673368 AGAAAACGAATCTGGCGATGTC 59.327 45.455 0.00 0.00 0.00 3.06
164 166 0.963355 GCGCCTAACCCATGAACCAA 60.963 55.000 0.00 0.00 0.00 3.67
166 168 2.119029 GGCGCCTAACCCATGAACC 61.119 63.158 22.15 0.00 0.00 3.62
169 171 3.078196 TCGGCGCCTAACCCATGA 61.078 61.111 26.68 8.76 0.00 3.07
170 172 2.895372 GTCGGCGCCTAACCCATG 60.895 66.667 26.68 6.06 0.00 3.66
180 182 2.306255 TTATCAAGAGGGGTCGGCGC 62.306 60.000 0.00 0.00 0.00 6.53
186 188 0.541863 CGCACCTTATCAAGAGGGGT 59.458 55.000 0.00 0.00 39.98 4.95
194 196 1.437573 CGAGCTCCGCACCTTATCA 59.562 57.895 8.47 0.00 0.00 2.15
226 228 2.484651 CACGTGGGATCTAGACTATCGG 59.515 54.545 7.95 0.00 0.00 4.18
229 231 4.138290 CTCACACGTGGGATCTAGACTAT 58.862 47.826 23.00 0.00 31.13 2.12
231 233 2.370349 CTCACACGTGGGATCTAGACT 58.630 52.381 23.00 0.00 31.13 3.24
235 237 1.663379 CCGCTCACACGTGGGATCTA 61.663 60.000 23.00 0.00 31.13 1.98
240 242 3.800685 TTGTCCGCTCACACGTGGG 62.801 63.158 21.57 17.59 35.28 4.61
245 247 2.870372 GCCATTGTCCGCTCACAC 59.130 61.111 0.00 0.00 0.00 3.82
246 248 2.741985 CGCCATTGTCCGCTCACA 60.742 61.111 0.00 0.00 0.00 3.58
256 258 2.016961 CTCGATTCACCCGCCATTG 58.983 57.895 0.00 0.00 0.00 2.82
259 261 3.700970 TGCTCGATTCACCCGCCA 61.701 61.111 0.00 0.00 0.00 5.69
262 264 1.811266 CCAGTGCTCGATTCACCCG 60.811 63.158 12.56 6.29 35.14 5.28
278 280 5.450818 ACCTCTAATAAATGTTGGAGCCA 57.549 39.130 0.00 0.00 35.93 4.75
331 333 1.614413 GAGAGTGTCTTCGTCTGGGTT 59.386 52.381 0.00 0.00 0.00 4.11
333 335 0.169230 CGAGAGTGTCTTCGTCTGGG 59.831 60.000 0.00 0.00 0.00 4.45
336 338 0.791422 CGTCGAGAGTGTCTTCGTCT 59.209 55.000 0.00 0.00 0.00 4.18
341 343 1.286260 GCACCGTCGAGAGTGTCTT 59.714 57.895 14.40 0.00 36.35 3.01
343 345 2.502080 CGCACCGTCGAGAGTGTC 60.502 66.667 14.40 7.52 36.35 3.67
381 384 2.793317 TTAGTTCCCCTCCGGCGACT 62.793 60.000 9.30 4.16 33.73 4.18
383 386 1.610086 TTTAGTTCCCCTCCGGCGA 60.610 57.895 9.30 0.00 0.00 5.54
398 401 1.708551 CTTTGGGAGGGAGGTGGTTTA 59.291 52.381 0.00 0.00 0.00 2.01
405 408 1.919600 CTGGAGCTTTGGGAGGGAGG 61.920 65.000 0.00 0.00 0.00 4.30
406 409 1.606531 CTGGAGCTTTGGGAGGGAG 59.393 63.158 0.00 0.00 0.00 4.30
407 410 1.925455 CCTGGAGCTTTGGGAGGGA 60.925 63.158 0.00 0.00 0.00 4.20
408 411 2.679716 CCTGGAGCTTTGGGAGGG 59.320 66.667 0.00 0.00 0.00 4.30
415 429 1.348696 CAAAAATGCCCCTGGAGCTTT 59.651 47.619 0.79 0.00 0.00 3.51
417 431 0.906282 CCAAAAATGCCCCTGGAGCT 60.906 55.000 0.79 0.00 0.00 4.09
421 435 2.970379 GCCCCAAAAATGCCCCTGG 61.970 63.158 0.00 0.00 0.00 4.45
425 439 0.110295 AAACAGCCCCAAAAATGCCC 59.890 50.000 0.00 0.00 0.00 5.36
431 445 2.043227 CCCTACAAAACAGCCCCAAAA 58.957 47.619 0.00 0.00 0.00 2.44
460 474 5.437060 GTCTCTGGAAATAACCTAATGCCA 58.563 41.667 0.00 0.00 0.00 4.92
468 482 3.391626 CCCTAGGGTCTCTGGAAATAACC 59.608 52.174 20.88 0.00 0.00 2.85
496 511 2.356125 GCAGCCCAGATAAAAGTCCAGA 60.356 50.000 0.00 0.00 0.00 3.86
497 512 2.019984 GCAGCCCAGATAAAAGTCCAG 58.980 52.381 0.00 0.00 0.00 3.86
498 513 1.678728 CGCAGCCCAGATAAAAGTCCA 60.679 52.381 0.00 0.00 0.00 4.02
602 622 4.492160 GACATCCGACGGCGCTGA 62.492 66.667 25.98 5.23 35.83 4.26
676 696 1.541672 GGAGGAGAGAGAGAGGGGG 59.458 68.421 0.00 0.00 0.00 5.40
677 697 1.541672 GGGAGGAGAGAGAGAGGGG 59.458 68.421 0.00 0.00 0.00 4.79
678 698 0.998945 AGGGGAGGAGAGAGAGAGGG 60.999 65.000 0.00 0.00 0.00 4.30
679 699 0.478507 GAGGGGAGGAGAGAGAGAGG 59.521 65.000 0.00 0.00 0.00 3.69
760 800 2.762459 CGGATCGGAGTGGGGGAA 60.762 66.667 0.00 0.00 0.00 3.97
869 913 4.148825 GCGGCAGGACCAGATCGT 62.149 66.667 0.00 0.00 39.03 3.73
903 947 2.269241 CCTCCCTCCGCAAGAACC 59.731 66.667 0.00 0.00 43.02 3.62
905 949 1.990060 CTCCCTCCCTCCGCAAGAA 60.990 63.158 0.00 0.00 43.02 2.52
951 1199 1.230497 GACCATCCTCCTCCTCGGA 59.770 63.158 0.00 0.00 40.30 4.55
952 1200 1.112315 CAGACCATCCTCCTCCTCGG 61.112 65.000 0.00 0.00 0.00 4.63
953 1201 0.106469 TCAGACCATCCTCCTCCTCG 60.106 60.000 0.00 0.00 0.00 4.63
1031 1293 3.224324 GCGGAGGGAGATGCGGTA 61.224 66.667 0.00 0.00 34.24 4.02
1229 1506 2.202311 CGTCGTCGTCGCTGATGT 60.202 61.111 0.00 0.00 36.96 3.06
1231 1508 2.097918 GTCGTCGTCGTCGCTGAT 59.902 61.111 7.01 0.00 38.33 2.90
1232 1509 4.419957 CGTCGTCGTCGTCGCTGA 62.420 66.667 8.64 0.00 40.72 4.26
1240 1517 3.873883 ATCCTCGCCGTCGTCGTC 61.874 66.667 0.71 0.00 36.96 4.20
1241 1518 4.175489 CATCCTCGCCGTCGTCGT 62.175 66.667 0.71 0.00 36.96 4.34
1250 1527 4.593864 GGCCCTCGTCATCCTCGC 62.594 72.222 0.00 0.00 0.00 5.03
1254 1531 3.406595 CTTGGGGCCCTCGTCATCC 62.407 68.421 25.93 1.93 0.00 3.51
1308 1597 1.632965 ATACGGCCCCAAAGGACCTC 61.633 60.000 0.00 0.00 43.25 3.85
1317 1606 2.788640 GCGTCTGTATACGGCCCCA 61.789 63.158 6.84 0.00 43.06 4.96
1326 1615 2.885644 CGGCGCTTGCGTCTGTAT 60.886 61.111 17.29 0.00 40.46 2.29
1435 1739 2.991540 AAAAGGGGCGAGCTTGGC 60.992 61.111 19.19 19.19 0.00 4.52
1437 1741 2.964978 CCAAAAGGGGCGAGCTTG 59.035 61.111 0.00 0.00 0.00 4.01
1474 1781 2.262915 CCTGGACGAGGAGCACAC 59.737 66.667 0.00 0.00 46.33 3.82
1527 1834 0.526954 CAGCGCCATCCAGAAAATGC 60.527 55.000 2.29 0.00 0.00 3.56
1578 1885 3.998672 GGGGAAGACGCGTCCACA 61.999 66.667 34.08 0.00 38.56 4.17
1682 1992 1.129437 GTGATGCCAGAAGAAACGAGC 59.871 52.381 0.00 0.00 0.00 5.03
1686 1996 0.804989 CCGGTGATGCCAGAAGAAAC 59.195 55.000 0.00 0.00 36.97 2.78
1698 2008 1.302511 GGTGTTGACAGCCGGTGAT 60.303 57.895 1.90 0.00 38.34 3.06
1711 2021 0.753479 TGCGACCCAAATGTGGTGTT 60.753 50.000 0.00 0.00 44.30 3.32
1712 2022 1.152860 TGCGACCCAAATGTGGTGT 60.153 52.632 0.00 0.00 44.30 4.16
1717 2027 2.671619 CCCGTGCGACCCAAATGT 60.672 61.111 0.00 0.00 0.00 2.71
1719 2029 2.359478 GTCCCGTGCGACCCAAAT 60.359 61.111 0.00 0.00 0.00 2.32
1735 2045 0.613260 TGGAGCCTGATAAAGTGCGT 59.387 50.000 0.00 0.00 0.00 5.24
1736 2046 1.293924 CTGGAGCCTGATAAAGTGCG 58.706 55.000 0.00 0.00 0.00 5.34
1794 2104 6.015940 GGAGGAACATGAATGAACAGAAGTTT 60.016 38.462 0.00 0.00 38.30 2.66
1796 2106 5.006386 GGAGGAACATGAATGAACAGAAGT 58.994 41.667 0.00 0.00 0.00 3.01
1810 2120 5.965033 AGTAACAGATGATGGAGGAACAT 57.035 39.130 0.00 0.00 0.00 2.71
1814 2124 3.711704 GGGAAGTAACAGATGATGGAGGA 59.288 47.826 0.00 0.00 0.00 3.71
1872 2182 4.809673 CAACAGTGCACTCTACATACAGA 58.190 43.478 18.64 0.00 0.00 3.41
1889 2199 1.448540 CCGTAGGCCTCTGCAACAG 60.449 63.158 9.68 0.00 46.14 3.16
1990 2306 2.019984 GAATGCAAGCCCTGGAAGTAG 58.980 52.381 0.00 0.00 0.00 2.57
2094 2410 2.955660 ACCTCCAGATGATCTCGAGAAC 59.044 50.000 20.91 17.82 34.25 3.01
2125 2441 3.636231 CCGGTGCTGGGAGAACCA 61.636 66.667 1.60 0.00 44.71 3.67
2169 2485 2.439507 ACATAATCCTGAACCGCTCCAT 59.560 45.455 0.00 0.00 0.00 3.41
2342 2661 1.821753 CAGTTCCGTCTGAGAGGTCAT 59.178 52.381 1.20 0.00 37.61 3.06
2492 2811 1.202940 AGACCTCTTTTGCTTCCCACC 60.203 52.381 0.00 0.00 0.00 4.61
2569 2888 3.060602 GCGGAAGGTGTCTATATTCTGC 58.939 50.000 2.20 2.20 44.22 4.26
2647 2966 2.271800 GACAGTTCCAGCATAACCTCG 58.728 52.381 0.00 0.00 0.00 4.63
2725 3044 0.324285 ACCTCTGCTCTGAAGGCTTG 59.676 55.000 3.46 0.00 0.00 4.01
2860 3179 2.125147 TGAGAATTGCGCTCCCGG 60.125 61.111 9.73 0.00 34.32 5.73
2881 3200 4.202367 ACACCTGGAATCGGGATAATCTTC 60.202 45.833 0.00 0.00 42.08 2.87
2914 3233 2.756042 CCCTCCCATGCCATCGGAA 61.756 63.158 0.00 0.00 0.00 4.30
3016 3335 3.379240 CGAGTCCATGTCATAAGCTGAG 58.621 50.000 0.00 0.00 33.51 3.35
3166 3485 3.474600 CACATCATTAGCTTCCTCAGGG 58.525 50.000 0.00 0.00 0.00 4.45
3312 3631 5.458215 GGGATTAGGCAAGGGATAAACATCT 60.458 44.000 0.00 0.00 0.00 2.90
3314 3633 4.449229 GGGGATTAGGCAAGGGATAAACAT 60.449 45.833 0.00 0.00 0.00 2.71
3315 3634 3.117284 GGGGATTAGGCAAGGGATAAACA 60.117 47.826 0.00 0.00 0.00 2.83
3339 3661 6.374613 AGGATATCTGCGATAAAGATCACGTA 59.625 38.462 2.05 0.00 35.92 3.57
3341 3663 5.645624 AGGATATCTGCGATAAAGATCACG 58.354 41.667 2.05 0.00 35.92 4.35
3381 3712 5.545063 TCGCTGGGTTAGATGATATGAAA 57.455 39.130 0.00 0.00 0.00 2.69
3567 3898 2.996249 TTTGTGGCATCCAAAAGCAA 57.004 40.000 1.21 0.00 31.72 3.91
3617 3954 5.105554 AGTCACAGAAGATTTCTAGCGTCAT 60.106 40.000 0.00 0.00 38.11 3.06
3621 3958 3.862267 CCAGTCACAGAAGATTTCTAGCG 59.138 47.826 0.00 0.00 38.11 4.26
3717 4055 3.320626 TCTCTGAGCTCAACAATGTTCG 58.679 45.455 18.85 2.53 0.00 3.95
3727 4065 5.183522 CAGACATGCTATATCTCTGAGCTCA 59.816 44.000 17.19 17.19 37.12 4.26
3736 4074 4.694760 TGCCAACAGACATGCTATATCT 57.305 40.909 0.00 0.00 0.00 1.98
3759 4099 6.127026 GGTAGAATAGATATACAGCCAAGGGG 60.127 46.154 0.00 0.00 37.18 4.79
3765 4105 6.801575 GCTGAGGTAGAATAGATATACAGCC 58.198 44.000 0.00 0.00 40.32 4.85
3767 4107 8.588290 AAGGCTGAGGTAGAATAGATATACAG 57.412 38.462 0.00 0.00 0.00 2.74
3843 4183 1.327303 CCAACAGCAGGGCTTGTTAA 58.673 50.000 0.00 0.00 36.40 2.01
3968 4312 5.862845 TGTTACAATGTTCCAATGGCAAAT 58.137 33.333 0.00 0.00 0.00 2.32
3993 4337 0.394192 TCGGGCATAATGAGCTCTGG 59.606 55.000 16.19 0.97 0.00 3.86
3994 4338 1.869767 GTTCGGGCATAATGAGCTCTG 59.130 52.381 16.19 5.77 0.00 3.35
4020 4365 8.340618 ACTATATATTGGGCACAATGATGTTC 57.659 34.615 24.56 0.00 46.37 3.18
4060 4405 6.320672 TGCTAAGGTAGAGTAGATGTACAACC 59.679 42.308 0.00 0.00 32.65 3.77
4067 4412 7.283625 ACTGAATGCTAAGGTAGAGTAGATG 57.716 40.000 0.00 0.00 0.00 2.90
4112 4467 9.223099 GGCTTGTTACAGAGTTTTAAATACCTA 57.777 33.333 0.00 0.00 0.00 3.08
4130 4488 1.602323 CCAACAGCCGGGCTTGTTA 60.602 57.895 25.69 0.00 36.40 2.41
4188 4546 4.969395 CGCAAATAATTTCTAGCATCGCAA 59.031 37.500 0.00 0.00 0.00 4.85
4245 4614 6.751514 ACACAAAAAGACAAGACATACACA 57.248 33.333 0.00 0.00 0.00 3.72
4308 4677 6.931281 TCTGCTTACTATGTTCAGGCATAATC 59.069 38.462 0.00 0.00 31.76 1.75
4336 4705 6.074005 GCTTACTATATTTTGAGCACGATGC 58.926 40.000 0.00 0.00 45.46 3.91
4416 4798 5.368145 AGACTGTTTTACATCACTTCAGCA 58.632 37.500 0.00 0.00 0.00 4.41
4472 4866 2.562912 CTGCACACAACGGGATGC 59.437 61.111 0.00 0.00 38.59 3.91
4473 4867 2.334946 CCCTGCACACAACGGGATG 61.335 63.158 0.00 0.00 39.08 3.51
4474 4868 2.034066 CCCTGCACACAACGGGAT 59.966 61.111 0.00 0.00 39.08 3.85
4475 4869 4.263572 CCCCTGCACACAACGGGA 62.264 66.667 8.01 0.00 37.55 5.14
4479 4873 4.947147 TCGCCCCCTGCACACAAC 62.947 66.667 0.00 0.00 41.33 3.32
4480 4874 4.196778 TTCGCCCCCTGCACACAA 62.197 61.111 0.00 0.00 41.33 3.33
4481 4875 4.641645 CTTCGCCCCCTGCACACA 62.642 66.667 0.00 0.00 41.33 3.72
4729 5123 4.299316 GCGACAATGCGGCGGATC 62.299 66.667 15.85 1.83 0.00 3.36
4735 5129 4.444024 CACACGGCGACAATGCGG 62.444 66.667 16.62 0.00 40.62 5.69
4736 5130 3.711842 ACACACGGCGACAATGCG 61.712 61.111 16.62 0.00 35.06 4.73
4737 5131 1.911293 ATCACACACGGCGACAATGC 61.911 55.000 16.62 0.00 0.00 3.56
4738 5132 1.355005 TATCACACACGGCGACAATG 58.645 50.000 16.62 3.21 0.00 2.82
4739 5133 2.309528 ATATCACACACGGCGACAAT 57.690 45.000 16.62 0.49 0.00 2.71
4858 5252 0.038159 CACTTCTTCCGACTCCGCTT 60.038 55.000 0.00 0.00 0.00 4.68
4859 5253 1.179814 ACACTTCTTCCGACTCCGCT 61.180 55.000 0.00 0.00 0.00 5.52
4860 5254 0.524862 TACACTTCTTCCGACTCCGC 59.475 55.000 0.00 0.00 0.00 5.54
4884 5302 8.730680 AGCTAACCAAACTATCATTTACACAAG 58.269 33.333 0.00 0.00 0.00 3.16
4921 5339 2.360165 GTCAGGCATTGTGAATCCATCC 59.640 50.000 0.00 0.00 0.00 3.51
4928 5346 3.890756 ACAGAATTGTCAGGCATTGTGAA 59.109 39.130 1.12 0.00 29.46 3.18
4933 5351 6.658816 TGTAACATACAGAATTGTCAGGCATT 59.341 34.615 0.00 0.00 38.76 3.56
4936 5354 6.094048 ACATGTAACATACAGAATTGTCAGGC 59.906 38.462 0.00 0.00 42.77 4.85
5009 5427 3.320541 CCTCTCTGCTCTACCAATACCTG 59.679 52.174 0.00 0.00 0.00 4.00
5018 5436 0.553819 TCCCCTCCTCTCTGCTCTAC 59.446 60.000 0.00 0.00 0.00 2.59
5067 5500 1.667722 GGGAAAAGGCAAGCCACTG 59.332 57.895 14.40 0.00 38.92 3.66
5079 5512 3.935172 ACTGGGATTTTTCTGGGGAAAA 58.065 40.909 0.55 0.55 45.97 2.29
5081 5514 4.293634 TCATACTGGGATTTTTCTGGGGAA 59.706 41.667 0.00 0.00 0.00 3.97
5083 5516 4.249638 TCATACTGGGATTTTTCTGGGG 57.750 45.455 0.00 0.00 0.00 4.96
5084 5517 5.893255 TCATTCATACTGGGATTTTTCTGGG 59.107 40.000 0.00 0.00 0.00 4.45
5087 5520 6.604795 CAGGTCATTCATACTGGGATTTTTCT 59.395 38.462 0.00 0.00 0.00 2.52
5093 5526 4.662179 ACATCAGGTCATTCATACTGGGAT 59.338 41.667 0.00 0.00 0.00 3.85
5100 5533 4.492494 ACAGCACATCAGGTCATTCATA 57.508 40.909 0.00 0.00 0.00 2.15
5109 5542 2.105006 ACAAGCTACAGCACATCAGG 57.895 50.000 3.70 0.00 45.16 3.86
5110 5543 3.854666 AGTACAAGCTACAGCACATCAG 58.145 45.455 3.70 0.00 45.16 2.90
5111 5544 3.961480 AGTACAAGCTACAGCACATCA 57.039 42.857 3.70 0.00 45.16 3.07
5112 5545 3.791887 CGTAGTACAAGCTACAGCACATC 59.208 47.826 3.70 0.00 45.16 3.06
5113 5546 3.192844 ACGTAGTACAAGCTACAGCACAT 59.807 43.478 3.70 0.00 41.94 3.21
5114 5547 2.555325 ACGTAGTACAAGCTACAGCACA 59.445 45.455 3.70 0.00 41.94 4.57
5115 5548 3.213249 ACGTAGTACAAGCTACAGCAC 57.787 47.619 3.70 0.00 41.94 4.40
5116 5549 5.571784 ATTACGTAGTACAAGCTACAGCA 57.428 39.130 3.70 0.00 45.76 4.41
5117 5550 9.837525 ATTATATTACGTAGTACAAGCTACAGC 57.162 33.333 0.00 0.00 45.76 4.40
5140 5690 7.361713 GCAACCAACAAGATGCTAGTTGTATTA 60.362 37.037 0.00 0.00 40.64 0.98
5144 5694 3.004734 GCAACCAACAAGATGCTAGTTGT 59.995 43.478 0.00 0.00 40.64 3.32
5146 5696 3.254166 CAGCAACCAACAAGATGCTAGTT 59.746 43.478 0.00 0.00 46.75 2.24
5149 5699 2.813754 GACAGCAACCAACAAGATGCTA 59.186 45.455 0.00 0.00 46.75 3.49
5152 5702 2.227388 GGAGACAGCAACCAACAAGATG 59.773 50.000 0.00 0.00 0.00 2.90
5158 5708 1.692411 AAAGGGAGACAGCAACCAAC 58.308 50.000 0.00 0.00 0.00 3.77
5160 5710 1.214175 TCAAAAGGGAGACAGCAACCA 59.786 47.619 0.00 0.00 0.00 3.67
5161 5711 1.981256 TCAAAAGGGAGACAGCAACC 58.019 50.000 0.00 0.00 0.00 3.77
5162 5712 3.149196 TGATCAAAAGGGAGACAGCAAC 58.851 45.455 0.00 0.00 0.00 4.17
5165 5715 4.460382 TGAAATGATCAAAAGGGAGACAGC 59.540 41.667 0.00 0.00 34.30 4.40
5166 5716 6.770746 ATGAAATGATCAAAAGGGAGACAG 57.229 37.500 0.00 0.00 42.54 3.51
5168 5718 8.139989 CCAATATGAAATGATCAAAAGGGAGAC 58.860 37.037 0.00 0.00 42.54 3.36
5169 5719 7.201938 GCCAATATGAAATGATCAAAAGGGAGA 60.202 37.037 0.00 0.00 42.54 3.71
5170 5720 6.927381 GCCAATATGAAATGATCAAAAGGGAG 59.073 38.462 0.00 0.00 42.54 4.30
5172 5722 6.584488 TGCCAATATGAAATGATCAAAAGGG 58.416 36.000 0.00 0.00 42.54 3.95
5188 5738 8.570488 CGCATCCAAATATACATATGCCAATAT 58.430 33.333 1.58 1.70 37.10 1.28
5191 5741 5.942826 TCGCATCCAAATATACATATGCCAA 59.057 36.000 1.58 0.00 37.10 4.52
5192 5742 5.495640 TCGCATCCAAATATACATATGCCA 58.504 37.500 1.58 0.00 37.10 4.92
5193 5743 5.504665 GCTCGCATCCAAATATACATATGCC 60.505 44.000 1.58 0.00 37.10 4.40
5194 5744 5.295292 AGCTCGCATCCAAATATACATATGC 59.705 40.000 1.58 0.00 37.07 3.14
5198 5774 5.308014 TCAAGCTCGCATCCAAATATACAT 58.692 37.500 0.00 0.00 0.00 2.29
5214 5790 9.294614 AGGATAATCAAAAGGATAATCAAGCTC 57.705 33.333 0.00 0.00 34.28 4.09
5215 5791 9.075678 CAGGATAATCAAAAGGATAATCAAGCT 57.924 33.333 0.00 0.00 34.28 3.74
5220 5796 7.177392 CCCCACAGGATAATCAAAAGGATAATC 59.823 40.741 0.00 0.00 38.24 1.75
5221 5797 7.012607 CCCCACAGGATAATCAAAAGGATAAT 58.987 38.462 0.00 0.00 38.24 1.28
5222 5798 6.372931 CCCCACAGGATAATCAAAAGGATAA 58.627 40.000 0.00 0.00 38.24 1.75
5224 5800 4.387891 CCCCCACAGGATAATCAAAAGGAT 60.388 45.833 0.00 0.00 38.24 3.24
5225 5801 3.052944 CCCCCACAGGATAATCAAAAGGA 60.053 47.826 0.00 0.00 38.24 3.36
5226 5802 3.299503 CCCCCACAGGATAATCAAAAGG 58.700 50.000 0.00 0.00 38.24 3.11
5227 5803 2.695147 GCCCCCACAGGATAATCAAAAG 59.305 50.000 0.00 0.00 38.24 2.27
5228 5804 2.314549 AGCCCCCACAGGATAATCAAAA 59.685 45.455 0.00 0.00 38.24 2.44
5230 5806 1.607225 AGCCCCCACAGGATAATCAA 58.393 50.000 0.00 0.00 38.24 2.57
5231 5807 1.607225 AAGCCCCCACAGGATAATCA 58.393 50.000 0.00 0.00 38.24 2.57
5232 5808 2.695147 CAAAAGCCCCCACAGGATAATC 59.305 50.000 0.00 0.00 38.24 1.75
5233 5809 2.314549 TCAAAAGCCCCCACAGGATAAT 59.685 45.455 0.00 0.00 38.24 1.28
5234 5810 1.713647 TCAAAAGCCCCCACAGGATAA 59.286 47.619 0.00 0.00 38.24 1.75
5235 5811 1.377690 TCAAAAGCCCCCACAGGATA 58.622 50.000 0.00 0.00 38.24 2.59
5236 5812 0.712380 ATCAAAAGCCCCCACAGGAT 59.288 50.000 0.00 0.00 38.24 3.24
5237 5813 0.039618 GATCAAAAGCCCCCACAGGA 59.960 55.000 0.00 0.00 38.24 3.86
5238 5814 0.251742 TGATCAAAAGCCCCCACAGG 60.252 55.000 0.00 0.00 0.00 4.00
5239 5815 1.856629 ATGATCAAAAGCCCCCACAG 58.143 50.000 0.00 0.00 0.00 3.66
5240 5816 2.323999 AATGATCAAAAGCCCCCACA 57.676 45.000 0.00 0.00 0.00 4.17
5241 5817 2.566724 TGAAATGATCAAAAGCCCCCAC 59.433 45.455 0.00 0.00 34.30 4.61
5243 5819 5.813513 ATATGAAATGATCAAAAGCCCCC 57.186 39.130 0.00 0.00 42.54 5.40
5245 5821 5.403466 GCGAATATGAAATGATCAAAAGCCC 59.597 40.000 0.00 0.00 42.54 5.19
5246 5822 5.978919 TGCGAATATGAAATGATCAAAAGCC 59.021 36.000 0.00 0.00 42.54 4.35
5249 5825 9.131416 GCATATGCGAATATGAAATGATCAAAA 57.869 29.630 25.01 0.00 42.54 2.44
5251 5827 7.818642 TGCATATGCGAATATGAAATGATCAA 58.181 30.769 25.01 0.00 45.83 2.57
5252 5828 7.380431 TGCATATGCGAATATGAAATGATCA 57.620 32.000 25.01 9.93 45.83 2.92
5257 5833 8.139350 CCCAATATGCATATGCGAATATGAAAT 58.861 33.333 25.01 18.48 45.83 2.17
5258 5834 7.482474 CCCAATATGCATATGCGAATATGAAA 58.518 34.615 25.01 13.35 45.83 2.69
5259 5835 6.459985 GCCCAATATGCATATGCGAATATGAA 60.460 38.462 25.01 16.63 45.83 2.57
5261 5837 5.217393 GCCCAATATGCATATGCGAATATG 58.783 41.667 19.77 17.83 45.83 1.78
5262 5838 4.888823 TGCCCAATATGCATATGCGAATAT 59.111 37.500 19.77 16.76 45.83 1.28
5263 5839 4.268359 TGCCCAATATGCATATGCGAATA 58.732 39.130 19.77 15.31 45.83 1.75
5265 5841 2.512705 TGCCCAATATGCATATGCGAA 58.487 42.857 19.77 13.19 45.83 4.70
5266 5842 2.197283 TGCCCAATATGCATATGCGA 57.803 45.000 19.77 13.39 45.83 5.10
5273 5849 0.186630 AGAGCCATGCCCAATATGCA 59.813 50.000 0.00 0.00 43.97 3.96
5274 5850 1.815003 GTAGAGCCATGCCCAATATGC 59.185 52.381 0.00 0.00 0.00 3.14
5275 5851 2.079158 CGTAGAGCCATGCCCAATATG 58.921 52.381 0.00 0.00 0.00 1.78
5276 5852 1.699634 ACGTAGAGCCATGCCCAATAT 59.300 47.619 0.00 0.00 0.00 1.28
5280 6095 1.128200 AATACGTAGAGCCATGCCCA 58.872 50.000 0.08 0.00 0.00 5.36
5281 6096 2.143925 GAAATACGTAGAGCCATGCCC 58.856 52.381 0.08 0.00 0.00 5.36
5294 6109 6.258727 ACAGGATAATCAAGCTGTGAAATACG 59.741 38.462 0.00 0.00 40.50 3.06
5295 6110 7.559590 ACAGGATAATCAAGCTGTGAAATAC 57.440 36.000 0.00 0.00 40.50 1.89
5300 6116 3.691118 GCAACAGGATAATCAAGCTGTGA 59.309 43.478 0.00 0.00 41.67 3.58
5316 6132 2.314323 AACCAAAAAGGCAGCAACAG 57.686 45.000 0.00 0.00 43.14 3.16
5317 6133 4.414337 AATAACCAAAAAGGCAGCAACA 57.586 36.364 0.00 0.00 43.14 3.33
5351 6167 6.630413 GCAAAACTCCTCTTTTCCTCCTTTTT 60.630 38.462 0.00 0.00 0.00 1.94
5353 6169 4.342378 GCAAAACTCCTCTTTTCCTCCTTT 59.658 41.667 0.00 0.00 0.00 3.11
5355 6171 3.117512 TGCAAAACTCCTCTTTTCCTCCT 60.118 43.478 0.00 0.00 0.00 3.69
5356 6172 3.222603 TGCAAAACTCCTCTTTTCCTCC 58.777 45.455 0.00 0.00 0.00 4.30
5357 6173 4.137543 TCTGCAAAACTCCTCTTTTCCTC 58.862 43.478 0.00 0.00 0.00 3.71
5358 6174 4.170468 TCTGCAAAACTCCTCTTTTCCT 57.830 40.909 0.00 0.00 0.00 3.36
5359 6175 4.802999 CATCTGCAAAACTCCTCTTTTCC 58.197 43.478 0.00 0.00 0.00 3.13
5360 6176 4.233005 GCATCTGCAAAACTCCTCTTTTC 58.767 43.478 0.00 0.00 41.59 2.29
5398 6217 3.862267 CGCCACATGTTTTCTTGTTCAAA 59.138 39.130 0.00 0.00 36.30 2.69
5399 6218 3.129462 TCGCCACATGTTTTCTTGTTCAA 59.871 39.130 0.00 0.00 36.30 2.69
5400 6219 2.685388 TCGCCACATGTTTTCTTGTTCA 59.315 40.909 0.00 0.00 36.30 3.18
5401 6220 3.003275 TCTCGCCACATGTTTTCTTGTTC 59.997 43.478 0.00 0.00 36.30 3.18
5402 6221 2.948979 TCTCGCCACATGTTTTCTTGTT 59.051 40.909 0.00 0.00 36.30 2.83
5403 6222 2.549754 CTCTCGCCACATGTTTTCTTGT 59.450 45.455 0.00 0.00 38.46 3.16
5404 6223 2.095567 CCTCTCGCCACATGTTTTCTTG 60.096 50.000 0.00 0.00 0.00 3.02
5405 6224 2.154462 CCTCTCGCCACATGTTTTCTT 58.846 47.619 0.00 0.00 0.00 2.52
5406 6225 1.347707 TCCTCTCGCCACATGTTTTCT 59.652 47.619 0.00 0.00 0.00 2.52
5407 6226 1.734465 CTCCTCTCGCCACATGTTTTC 59.266 52.381 0.00 0.00 0.00 2.29
5408 6227 1.611673 CCTCCTCTCGCCACATGTTTT 60.612 52.381 0.00 0.00 0.00 2.43
5440 6259 7.932491 TCTCAATCTCAATCTCAATCTCAATCC 59.068 37.037 0.00 0.00 0.00 3.01
5441 6260 8.890124 TCTCAATCTCAATCTCAATCTCAATC 57.110 34.615 0.00 0.00 0.00 2.67
5442 6261 9.854668 AATCTCAATCTCAATCTCAATCTCAAT 57.145 29.630 0.00 0.00 0.00 2.57
5443 6262 9.110502 CAATCTCAATCTCAATCTCAATCTCAA 57.889 33.333 0.00 0.00 0.00 3.02
5444 6263 8.483758 TCAATCTCAATCTCAATCTCAATCTCA 58.516 33.333 0.00 0.00 0.00 3.27
5445 6264 8.890124 TCAATCTCAATCTCAATCTCAATCTC 57.110 34.615 0.00 0.00 0.00 2.75
5446 6265 8.706521 TCTCAATCTCAATCTCAATCTCAATCT 58.293 33.333 0.00 0.00 0.00 2.40
5447 6266 8.890124 TCTCAATCTCAATCTCAATCTCAATC 57.110 34.615 0.00 0.00 0.00 2.67
5448 6267 9.278978 CATCTCAATCTCAATCTCAATCTCAAT 57.721 33.333 0.00 0.00 0.00 2.57
5449 6268 8.483758 TCATCTCAATCTCAATCTCAATCTCAA 58.516 33.333 0.00 0.00 0.00 3.02
5450 6269 8.019656 TCATCTCAATCTCAATCTCAATCTCA 57.980 34.615 0.00 0.00 0.00 3.27
5451 6270 9.146984 GATCATCTCAATCTCAATCTCAATCTC 57.853 37.037 0.00 0.00 0.00 2.75
5452 6271 8.098286 GGATCATCTCAATCTCAATCTCAATCT 58.902 37.037 0.00 0.00 0.00 2.40
5453 6272 8.098286 AGGATCATCTCAATCTCAATCTCAATC 58.902 37.037 0.00 0.00 0.00 2.67
5454 6273 7.980032 AGGATCATCTCAATCTCAATCTCAAT 58.020 34.615 0.00 0.00 0.00 2.57
5455 6274 7.376335 AGGATCATCTCAATCTCAATCTCAA 57.624 36.000 0.00 0.00 0.00 3.02
5456 6275 6.997942 AGGATCATCTCAATCTCAATCTCA 57.002 37.500 0.00 0.00 0.00 3.27
5457 6276 6.875195 GGAAGGATCATCTCAATCTCAATCTC 59.125 42.308 0.00 0.00 0.00 2.75
5458 6277 6.329460 TGGAAGGATCATCTCAATCTCAATCT 59.671 38.462 0.00 0.00 0.00 2.40
5459 6278 6.531923 TGGAAGGATCATCTCAATCTCAATC 58.468 40.000 0.00 0.00 0.00 2.67
5460 6279 6.329460 TCTGGAAGGATCATCTCAATCTCAAT 59.671 38.462 0.00 0.00 0.00 2.57
5461 6280 5.664457 TCTGGAAGGATCATCTCAATCTCAA 59.336 40.000 0.00 0.00 0.00 3.02
5462 6281 5.214293 TCTGGAAGGATCATCTCAATCTCA 58.786 41.667 0.00 0.00 0.00 3.27
5463 6282 5.305128 ACTCTGGAAGGATCATCTCAATCTC 59.695 44.000 0.00 0.00 0.00 2.75
5464 6283 5.218179 ACTCTGGAAGGATCATCTCAATCT 58.782 41.667 0.00 0.00 0.00 2.40
5465 6284 5.511202 GGACTCTGGAAGGATCATCTCAATC 60.511 48.000 0.00 0.00 0.00 2.67
5466 6285 4.347583 GGACTCTGGAAGGATCATCTCAAT 59.652 45.833 0.00 0.00 0.00 2.57
5467 6286 3.708631 GGACTCTGGAAGGATCATCTCAA 59.291 47.826 0.00 0.00 0.00 3.02
5468 6287 3.303938 GGACTCTGGAAGGATCATCTCA 58.696 50.000 0.00 0.00 0.00 3.27
5469 6288 3.303938 TGGACTCTGGAAGGATCATCTC 58.696 50.000 0.00 0.00 0.00 2.75
5488 6307 0.039074 GTGTGTCGTCTGGAGACTGG 60.039 60.000 5.30 0.00 42.66 4.00
5489 6308 0.668535 TGTGTGTCGTCTGGAGACTG 59.331 55.000 5.30 0.00 42.66 3.51
5492 6311 0.668535 CTGTGTGTGTCGTCTGGAGA 59.331 55.000 0.00 0.00 0.00 3.71
5493 6312 0.668535 TCTGTGTGTGTCGTCTGGAG 59.331 55.000 0.00 0.00 0.00 3.86
5494 6313 1.107945 TTCTGTGTGTGTCGTCTGGA 58.892 50.000 0.00 0.00 0.00 3.86
5495 6314 1.934589 TTTCTGTGTGTGTCGTCTGG 58.065 50.000 0.00 0.00 0.00 3.86
5496 6315 2.221749 CCATTTCTGTGTGTGTCGTCTG 59.778 50.000 0.00 0.00 0.00 3.51
5497 6316 2.102420 TCCATTTCTGTGTGTGTCGTCT 59.898 45.455 0.00 0.00 0.00 4.18
5499 6318 2.102420 TCTCCATTTCTGTGTGTGTCGT 59.898 45.455 0.00 0.00 0.00 4.34
5500 6319 2.733552 CTCTCCATTTCTGTGTGTGTCG 59.266 50.000 0.00 0.00 0.00 4.35
5501 6320 3.070018 CCTCTCCATTTCTGTGTGTGTC 58.930 50.000 0.00 0.00 0.00 3.67
5502 6321 2.439507 ACCTCTCCATTTCTGTGTGTGT 59.560 45.455 0.00 0.00 0.00 3.72
5503 6322 2.810274 CACCTCTCCATTTCTGTGTGTG 59.190 50.000 0.00 0.00 0.00 3.82
5504 6323 2.439507 ACACCTCTCCATTTCTGTGTGT 59.560 45.455 0.00 0.00 35.76 3.72
5505 6324 2.810274 CACACCTCTCCATTTCTGTGTG 59.190 50.000 6.23 6.23 44.95 3.82
5506 6325 2.439507 ACACACCTCTCCATTTCTGTGT 59.560 45.455 0.00 0.00 37.89 3.72
5507 6326 2.810274 CACACACCTCTCCATTTCTGTG 59.190 50.000 0.00 0.00 36.03 3.66
5508 6327 2.705658 TCACACACCTCTCCATTTCTGT 59.294 45.455 0.00 0.00 0.00 3.41
5509 6328 3.332919 CTCACACACCTCTCCATTTCTG 58.667 50.000 0.00 0.00 0.00 3.02
5510 6329 2.304180 CCTCACACACCTCTCCATTTCT 59.696 50.000 0.00 0.00 0.00 2.52
5511 6330 2.704572 CCTCACACACCTCTCCATTTC 58.295 52.381 0.00 0.00 0.00 2.17
5512 6331 1.271597 GCCTCACACACCTCTCCATTT 60.272 52.381 0.00 0.00 0.00 2.32
5513 6332 0.326264 GCCTCACACACCTCTCCATT 59.674 55.000 0.00 0.00 0.00 3.16
5514 6333 1.892819 CGCCTCACACACCTCTCCAT 61.893 60.000 0.00 0.00 0.00 3.41
5515 6334 2.574018 CGCCTCACACACCTCTCCA 61.574 63.158 0.00 0.00 0.00 3.86
5516 6335 2.262915 CGCCTCACACACCTCTCC 59.737 66.667 0.00 0.00 0.00 3.71
5517 6336 2.219325 CTCCGCCTCACACACCTCTC 62.219 65.000 0.00 0.00 0.00 3.20
5518 6337 2.203640 TCCGCCTCACACACCTCT 60.204 61.111 0.00 0.00 0.00 3.69
5519 6338 2.262915 CTCCGCCTCACACACCTC 59.737 66.667 0.00 0.00 0.00 3.85
5520 6339 3.314331 CCTCCGCCTCACACACCT 61.314 66.667 0.00 0.00 0.00 4.00
5521 6340 3.626924 ACCTCCGCCTCACACACC 61.627 66.667 0.00 0.00 0.00 4.16
5522 6341 2.357517 CACCTCCGCCTCACACAC 60.358 66.667 0.00 0.00 0.00 3.82
5523 6342 2.377628 GAACACCTCCGCCTCACACA 62.378 60.000 0.00 0.00 0.00 3.72
5524 6343 1.668151 GAACACCTCCGCCTCACAC 60.668 63.158 0.00 0.00 0.00 3.82
5546 6365 1.551329 GGGATAAGGCGAGAGGAGGAT 60.551 57.143 0.00 0.00 0.00 3.24
5547 6366 0.178958 GGGATAAGGCGAGAGGAGGA 60.179 60.000 0.00 0.00 0.00 3.71
5549 6368 1.203001 AGAGGGATAAGGCGAGAGGAG 60.203 57.143 0.00 0.00 0.00 3.69
5550 6369 0.854218 AGAGGGATAAGGCGAGAGGA 59.146 55.000 0.00 0.00 0.00 3.71
5572 6403 2.201734 AAAGGAGGAGGAGGAGGGGG 62.202 65.000 0.00 0.00 0.00 5.40
5573 6404 0.253394 AAAAGGAGGAGGAGGAGGGG 60.253 60.000 0.00 0.00 0.00 4.79
5574 6405 1.208706 GAAAAGGAGGAGGAGGAGGG 58.791 60.000 0.00 0.00 0.00 4.30
5680 6517 3.596799 TCCACCCCTGGAGACGGA 61.597 66.667 0.00 0.00 42.15 4.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.