Multiple sequence alignment - TraesCS6D01G004400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G004400 chr6D 100.000 4937 0 0 1 4937 2133352 2138288 0.000000e+00 9118
1 TraesCS6D01G004400 chr6D 93.232 3413 146 32 1540 4937 4209039 4212381 0.000000e+00 4944
2 TraesCS6D01G004400 chr6D 93.475 1502 89 8 1 1496 4207546 4209044 0.000000e+00 2222
3 TraesCS6D01G004400 chr6D 80.334 2573 381 58 626 3120 439662498 439659973 0.000000e+00 1832
4 TraesCS6D01G004400 chr6D 81.225 2285 315 53 626 2840 439616067 439618307 0.000000e+00 1738
5 TraesCS6D01G004400 chr6D 81.026 838 115 20 4118 4937 40499323 40498512 1.170000e-175 627
6 TraesCS6D01G004400 chr6D 80.645 682 90 21 4274 4937 297402865 297402208 1.600000e-134 490
7 TraesCS6D01G004400 chr6D 86.124 209 23 6 332 536 297325464 297325670 2.310000e-53 220
8 TraesCS6D01G004400 chr6B 93.675 3399 165 17 1558 4937 4377935 4374568 0.000000e+00 5040
9 TraesCS6D01G004400 chr6B 93.723 2565 132 15 219 2764 3799225 3801779 0.000000e+00 3818
10 TraesCS6D01G004400 chr6B 93.478 2576 127 15 2379 4937 3836379 3838930 0.000000e+00 3788
11 TraesCS6D01G004400 chr6B 92.642 1563 92 10 1 1551 3834513 3836064 0.000000e+00 2228
12 TraesCS6D01G004400 chr6B 92.476 1555 101 7 1 1549 4379572 4378028 0.000000e+00 2209
13 TraesCS6D01G004400 chr6B 80.483 1532 214 41 626 2113 664525157 664523667 0.000000e+00 1094
14 TraesCS6D01G004400 chr6B 79.158 998 162 27 2149 3120 664523577 664522600 0.000000e+00 649
15 TraesCS6D01G004400 chr6B 81.113 683 92 29 4274 4937 461429737 461429073 3.410000e-141 512
16 TraesCS6D01G004400 chr6B 95.259 232 11 0 1558 1789 3836155 3836386 7.810000e-98 368
17 TraesCS6D01G004400 chr6A 93.169 2357 101 19 552 2891 775081 772768 0.000000e+00 3406
18 TraesCS6D01G004400 chr6A 94.562 1177 59 3 3144 4316 772748 771573 0.000000e+00 1814
19 TraesCS6D01G004400 chr6A 80.180 2558 365 72 627 3098 587890305 587892806 0.000000e+00 1784
20 TraesCS6D01G004400 chr6A 79.783 2577 376 75 626 3120 587972165 587969652 0.000000e+00 1738
21 TraesCS6D01G004400 chr6A 88.889 522 55 3 1 519 775989 775468 1.500000e-179 640
22 TraesCS6D01G004400 chrUn 93.443 1998 102 12 2945 4937 355129168 355127195 0.000000e+00 2937
23 TraesCS6D01G004400 chrUn 92.797 1555 95 8 1 1549 255513322 255514865 0.000000e+00 2235
24 TraesCS6D01G004400 chrUn 93.033 1507 83 11 3436 4937 355695289 355693800 0.000000e+00 2182
25 TraesCS6D01G004400 chrUn 92.620 1233 78 5 1 1229 380679622 380680845 0.000000e+00 1760
26 TraesCS6D01G004400 chrUn 94.706 850 36 5 1558 2403 255514958 255515802 0.000000e+00 1312
27 TraesCS6D01G004400 chrUn 95.758 495 21 0 2945 3439 475068857 475068363 0.000000e+00 798
28 TraesCS6D01G004400 chrUn 96.774 403 13 0 3436 3838 478404781 478405183 0.000000e+00 673
29 TraesCS6D01G004400 chrUn 87.723 448 45 3 1 447 408243417 408242979 9.480000e-142 514
30 TraesCS6D01G004400 chr5D 82.008 717 92 25 4239 4937 533263220 533263917 4.290000e-160 575
31 TraesCS6D01G004400 chr5B 80.350 743 95 23 4202 4937 673292138 673292836 2.630000e-142 516
32 TraesCS6D01G004400 chr5B 79.397 199 34 6 4072 4264 711837875 711837678 3.100000e-27 134
33 TraesCS6D01G004400 chr3D 80.236 678 93 26 4278 4937 151997726 151997072 5.780000e-129 472
34 TraesCS6D01G004400 chr2D 86.562 320 38 3 1 316 630720293 630719975 1.020000e-91 348
35 TraesCS6D01G004400 chr1A 85.938 320 39 5 1 316 58345681 58345998 2.200000e-88 337
36 TraesCS6D01G004400 chr4D 80.864 324 43 7 4144 4464 503064609 503064302 2.300000e-58 237
37 TraesCS6D01G004400 chr7A 88.000 200 22 2 342 540 469153853 469153655 8.260000e-58 235


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G004400 chr6D 2133352 2138288 4936 False 9118.000000 9118 100.000000 1 4937 1 chr6D.!!$F1 4936
1 TraesCS6D01G004400 chr6D 4207546 4212381 4835 False 3583.000000 4944 93.353500 1 4937 2 chr6D.!!$F4 4936
2 TraesCS6D01G004400 chr6D 439659973 439662498 2525 True 1832.000000 1832 80.334000 626 3120 1 chr6D.!!$R3 2494
3 TraesCS6D01G004400 chr6D 439616067 439618307 2240 False 1738.000000 1738 81.225000 626 2840 1 chr6D.!!$F3 2214
4 TraesCS6D01G004400 chr6D 40498512 40499323 811 True 627.000000 627 81.026000 4118 4937 1 chr6D.!!$R1 819
5 TraesCS6D01G004400 chr6D 297402208 297402865 657 True 490.000000 490 80.645000 4274 4937 1 chr6D.!!$R2 663
6 TraesCS6D01G004400 chr6B 3799225 3801779 2554 False 3818.000000 3818 93.723000 219 2764 1 chr6B.!!$F1 2545
7 TraesCS6D01G004400 chr6B 4374568 4379572 5004 True 3624.500000 5040 93.075500 1 4937 2 chr6B.!!$R2 4936
8 TraesCS6D01G004400 chr6B 3834513 3838930 4417 False 2128.000000 3788 93.793000 1 4937 3 chr6B.!!$F2 4936
9 TraesCS6D01G004400 chr6B 664522600 664525157 2557 True 871.500000 1094 79.820500 626 3120 2 chr6B.!!$R3 2494
10 TraesCS6D01G004400 chr6B 461429073 461429737 664 True 512.000000 512 81.113000 4274 4937 1 chr6B.!!$R1 663
11 TraesCS6D01G004400 chr6A 771573 775989 4416 True 1953.333333 3406 92.206667 1 4316 3 chr6A.!!$R2 4315
12 TraesCS6D01G004400 chr6A 587890305 587892806 2501 False 1784.000000 1784 80.180000 627 3098 1 chr6A.!!$F1 2471
13 TraesCS6D01G004400 chr6A 587969652 587972165 2513 True 1738.000000 1738 79.783000 626 3120 1 chr6A.!!$R1 2494
14 TraesCS6D01G004400 chrUn 355127195 355129168 1973 True 2937.000000 2937 93.443000 2945 4937 1 chrUn.!!$R1 1992
15 TraesCS6D01G004400 chrUn 355693800 355695289 1489 True 2182.000000 2182 93.033000 3436 4937 1 chrUn.!!$R2 1501
16 TraesCS6D01G004400 chrUn 255513322 255515802 2480 False 1773.500000 2235 93.751500 1 2403 2 chrUn.!!$F3 2402
17 TraesCS6D01G004400 chrUn 380679622 380680845 1223 False 1760.000000 1760 92.620000 1 1229 1 chrUn.!!$F1 1228
18 TraesCS6D01G004400 chr5D 533263220 533263917 697 False 575.000000 575 82.008000 4239 4937 1 chr5D.!!$F1 698
19 TraesCS6D01G004400 chr5B 673292138 673292836 698 False 516.000000 516 80.350000 4202 4937 1 chr5B.!!$F1 735
20 TraesCS6D01G004400 chr3D 151997072 151997726 654 True 472.000000 472 80.236000 4278 4937 1 chr3D.!!$R1 659

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
583 955 1.275573 GGTTGTAAAGAGGAGCGGACT 59.724 52.381 0.0 0.0 0.00 3.85 F
1264 1655 4.159693 ACTGCATTGATGTGAATGAGCAAT 59.840 37.500 0.0 0.0 35.65 3.56 F
2013 2525 4.748102 TCGAGGGTCGTAATAATGAATTGC 59.252 41.667 0.0 0.0 41.35 3.56 F
3597 4242 2.744202 CTGGTGGTTGACTTATGAGCAC 59.256 50.000 0.0 0.0 40.14 4.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1703 2197 2.093181 TGCCACTTCCATTAGTACGCAT 60.093 45.455 0.00 0.0 31.44 4.73 R
2740 3352 1.178534 CCCGAACACCAGCACCAATT 61.179 55.000 0.00 0.0 0.00 2.32 R
3708 4353 2.014010 AATGTCCACTGCCCATTTGT 57.986 45.000 0.00 0.0 0.00 2.83 R
4535 5243 1.584724 ATTGGAGACCGGTGGATCTT 58.415 50.000 14.63 0.0 0.00 2.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
84 85 3.126879 CGCAAGATGGAAGCCGCA 61.127 61.111 0.00 0.00 43.02 5.69
85 86 2.689785 CGCAAGATGGAAGCCGCAA 61.690 57.895 0.00 0.00 43.02 4.85
138 139 3.616721 CCGGCTGATCCCTACGGG 61.617 72.222 0.00 0.00 46.11 5.28
334 339 7.012044 AGGGAGTATTGTTTAATTATGTCGCAC 59.988 37.037 0.00 0.00 0.00 5.34
336 341 9.037737 GGAGTATTGTTTAATTATGTCGCACTA 57.962 33.333 0.00 0.00 0.00 2.74
409 425 2.972625 TCACACCGTTGGATCATCTTC 58.027 47.619 0.00 0.00 0.00 2.87
447 464 7.870445 TGGTGCTCCACTATTTATTTCAAAAAC 59.130 33.333 2.64 0.00 39.03 2.43
583 955 1.275573 GGTTGTAAAGAGGAGCGGACT 59.724 52.381 0.00 0.00 0.00 3.85
609 981 9.911788 TCAGAAAGATTGCCTTAGAATAGATTT 57.088 29.630 0.00 0.00 34.00 2.17
965 1355 6.599244 CGGATGCATATAAATATGGTGGTCTT 59.401 38.462 0.00 0.00 40.31 3.01
995 1385 8.803235 ACTCCAAAACTAACAATTCCCTATTTC 58.197 33.333 0.00 0.00 0.00 2.17
1054 1444 8.908786 TCTTTTCATGTCATTTCTAGTTCTGT 57.091 30.769 0.00 0.00 0.00 3.41
1264 1655 4.159693 ACTGCATTGATGTGAATGAGCAAT 59.840 37.500 0.00 0.00 35.65 3.56
1476 1869 9.178758 AGAAAATTAGGGCTATTGAAAGTGTAG 57.821 33.333 0.00 0.00 0.00 2.74
1495 1888 8.209917 AGTGTAGTGAACTAAGAACCTTTTTG 57.790 34.615 0.00 0.00 0.00 2.44
2013 2525 4.748102 TCGAGGGTCGTAATAATGAATTGC 59.252 41.667 0.00 0.00 41.35 3.56
2127 2672 8.205512 TGAGTAGTTGGTACTGATTTTTGTACA 58.794 33.333 0.00 0.00 42.48 2.90
2130 2675 9.480053 GTAGTTGGTACTGATTTTTGTACACTA 57.520 33.333 0.00 0.00 40.34 2.74
2210 2783 8.654997 TGAAGGAATTCCAATTTCATTACCAAA 58.345 29.630 26.22 1.08 38.89 3.28
2211 2784 8.846943 AAGGAATTCCAATTTCATTACCAAAC 57.153 30.769 26.22 0.00 38.89 2.93
2406 2988 8.816640 ATGAACCAAAAGTGATACATTTGAAC 57.183 30.769 10.23 3.83 38.60 3.18
2731 3343 4.792068 TGAAAAGTGGAGGAGAACAACAT 58.208 39.130 0.00 0.00 0.00 2.71
2733 3345 6.542821 TGAAAAGTGGAGGAGAACAACATAT 58.457 36.000 0.00 0.00 0.00 1.78
2740 3352 5.248248 TGGAGGAGAACAACATATTGACAGA 59.752 40.000 0.00 0.00 39.30 3.41
3232 3877 5.007034 TGTTTACCATCTTACACCCACATG 58.993 41.667 0.00 0.00 0.00 3.21
3293 3938 9.860898 AATATAGATTCAAAAGGCAAGTTCAAC 57.139 29.630 0.00 0.00 0.00 3.18
3433 4078 6.280855 AGGATTATAAAATAATTGGCCGCC 57.719 37.500 1.04 1.04 0.00 6.13
3568 4213 6.524101 TTGATTTATTTTAGGACCCTGTGC 57.476 37.500 0.00 0.00 0.00 4.57
3597 4242 2.744202 CTGGTGGTTGACTTATGAGCAC 59.256 50.000 0.00 0.00 40.14 4.40
3654 4299 5.648092 CGAATTCCTTAGGAACAAAGGTGAT 59.352 40.000 16.74 0.00 45.07 3.06
3708 4353 0.318441 CTGCCTCGTCAAACTCTCCA 59.682 55.000 0.00 0.00 0.00 3.86
3924 4570 6.553852 TCTTCTATGGTGGATTAGGGTCTTAC 59.446 42.308 0.00 0.00 0.00 2.34
4041 4687 0.547712 AGAAGTTGGGGCCTAGCAGA 60.548 55.000 6.50 0.00 0.00 4.26
4047 4693 0.252513 TGGGGCCTAGCAGAAGTGTA 60.253 55.000 0.84 0.00 0.00 2.90
4063 4709 4.208403 TAGGGGCCCGCGCTACTA 62.208 66.667 18.95 7.46 34.44 1.82
4067 4713 4.151582 GGCCCGCGCTACTACCAA 62.152 66.667 5.56 0.00 34.44 3.67
4070 4716 1.143183 CCCGCGCTACTACCAACAT 59.857 57.895 5.56 0.00 0.00 2.71
4175 4821 6.463049 CCCACACTACTACTAAATAGCAGCAT 60.463 42.308 0.00 0.00 33.73 3.79
4234 4881 9.964303 TGCGTTTTCATTTCAGCATATTTATAT 57.036 25.926 0.00 0.00 0.00 0.86
4406 5109 7.713734 TCACCAGTACTAGCTAATTGTTAGT 57.286 36.000 0.00 8.57 43.52 2.24
4466 5170 3.711704 AGGACCTACTCTCTCTCTCTCTG 59.288 52.174 0.00 0.00 0.00 3.35
4467 5171 3.454812 GGACCTACTCTCTCTCTCTCTGT 59.545 52.174 0.00 0.00 0.00 3.41
4468 5172 4.442706 GACCTACTCTCTCTCTCTCTGTG 58.557 52.174 0.00 0.00 0.00 3.66
4469 5173 3.844211 ACCTACTCTCTCTCTCTCTGTGT 59.156 47.826 0.00 0.00 0.00 3.72
4470 5174 4.191544 CCTACTCTCTCTCTCTCTGTGTG 58.808 52.174 0.00 0.00 0.00 3.82
4471 5175 3.788227 ACTCTCTCTCTCTCTGTGTGT 57.212 47.619 0.00 0.00 0.00 3.72
4472 5176 3.411446 ACTCTCTCTCTCTCTGTGTGTG 58.589 50.000 0.00 0.00 0.00 3.82
4473 5177 3.181445 ACTCTCTCTCTCTCTGTGTGTGT 60.181 47.826 0.00 0.00 0.00 3.72
4474 5178 3.145286 TCTCTCTCTCTCTGTGTGTGTG 58.855 50.000 0.00 0.00 0.00 3.82
4475 5179 2.884012 CTCTCTCTCTCTGTGTGTGTGT 59.116 50.000 0.00 0.00 0.00 3.72
4476 5180 2.620585 TCTCTCTCTCTGTGTGTGTGTG 59.379 50.000 0.00 0.00 0.00 3.82
4480 5184 2.099756 TCTCTCTGTGTGTGTGTGTCTG 59.900 50.000 0.00 0.00 0.00 3.51
4520 5228 5.357742 AAATTGAAAAACCTGTCCAGCTT 57.642 34.783 0.00 0.00 0.00 3.74
4535 5243 3.133901 TCCAGCTTCAATACGGAGCATAA 59.866 43.478 0.00 0.00 0.00 1.90
4689 5404 3.624861 GCAATTGTCATCTCACCTTCGAT 59.375 43.478 7.40 0.00 0.00 3.59
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
138 139 4.910585 CATCGCGTACCCCAGCCC 62.911 72.222 5.77 0.00 0.00 5.19
161 162 3.636231 CGTCTCCCCCTGTTGCCA 61.636 66.667 0.00 0.00 0.00 4.92
165 166 2.284699 CCTCCGTCTCCCCCTGTT 60.285 66.667 0.00 0.00 0.00 3.16
168 169 4.787280 CAGCCTCCGTCTCCCCCT 62.787 72.222 0.00 0.00 0.00 4.79
207 208 0.116541 ACCCTTCTTCCTCCCTCGAA 59.883 55.000 0.00 0.00 0.00 3.71
210 211 1.657804 TCAACCCTTCTTCCTCCCTC 58.342 55.000 0.00 0.00 0.00 4.30
211 212 2.367947 ATCAACCCTTCTTCCTCCCT 57.632 50.000 0.00 0.00 0.00 4.20
268 273 6.237901 TGTCACCAGCTTAGTTCAATTGTAT 58.762 36.000 5.13 0.00 0.00 2.29
360 366 8.190122 GTGAAAATATGCATTTATGTGTCCTCA 58.810 33.333 3.54 0.00 33.09 3.86
409 425 3.937814 TGGAGCACCACTACAATGTAAG 58.062 45.455 0.00 0.00 41.77 2.34
466 484 6.574350 AGTTAACACTCGCTAAGCTTCATAT 58.426 36.000 0.00 0.00 0.00 1.78
469 487 4.252971 AGTTAACACTCGCTAAGCTTCA 57.747 40.909 0.00 0.00 0.00 3.02
583 955 9.911788 AAATCTATTCTAAGGCAATCTTTCTGA 57.088 29.630 0.00 0.00 36.93 3.27
609 981 9.638239 GATTTGTTGCCTTAAATTGTAATCTCA 57.362 29.630 0.00 0.00 0.00 3.27
655 1028 5.239306 TCTTCACAAGTGCCAAGTTTGATAG 59.761 40.000 0.00 0.00 0.00 2.08
941 1331 7.944729 AAGACCACCATATTTATATGCATCC 57.055 36.000 0.19 0.00 38.99 3.51
965 1355 7.523415 AGGGAATTGTTAGTTTTGGAGTTCTA 58.477 34.615 0.00 0.00 0.00 2.10
995 1385 2.997986 GCTTGCATTCCTTTCATTGTGG 59.002 45.455 0.00 0.00 0.00 4.17
1054 1444 3.149196 GCACATCTTTTCCTCTGGTCAA 58.851 45.455 0.00 0.00 0.00 3.18
1264 1655 2.424842 AATGGGTGCCTGAAAGCCGA 62.425 55.000 0.00 0.00 38.05 5.54
1703 2197 2.093181 TGCCACTTCCATTAGTACGCAT 60.093 45.455 0.00 0.00 31.44 4.73
2174 2747 6.817765 TTGGAATTCCTTCATGTACAACTC 57.182 37.500 24.73 0.00 36.82 3.01
2210 2783 4.141711 TGTCCAAGAGAGTGTTGCTAAAGT 60.142 41.667 0.00 0.00 0.00 2.66
2211 2784 4.380531 TGTCCAAGAGAGTGTTGCTAAAG 58.619 43.478 0.00 0.00 0.00 1.85
2406 2988 9.888878 AATTACATGATTCATATTCGAAAGCAG 57.111 29.630 0.00 0.00 0.00 4.24
2731 3343 3.758023 CACCAGCACCAATTCTGTCAATA 59.242 43.478 0.00 0.00 0.00 1.90
2733 3345 1.955778 CACCAGCACCAATTCTGTCAA 59.044 47.619 0.00 0.00 0.00 3.18
2740 3352 1.178534 CCCGAACACCAGCACCAATT 61.179 55.000 0.00 0.00 0.00 2.32
2913 3554 5.393866 TGTATAGGCCATCATACTGTGAGA 58.606 41.667 5.01 0.00 40.92 3.27
3135 3780 9.684448 TGCACACGAAATAAAATCAAAGAATAA 57.316 25.926 0.00 0.00 0.00 1.40
3140 3785 8.372521 GGTTATGCACACGAAATAAAATCAAAG 58.627 33.333 0.00 0.00 0.00 2.77
3186 3831 4.256920 AGCATATCAAGTTGTGGTCACTC 58.743 43.478 2.11 0.00 0.00 3.51
3187 3832 4.292186 AGCATATCAAGTTGTGGTCACT 57.708 40.909 2.11 0.00 0.00 3.41
3232 3877 8.562892 AGTGTCATATATGTGCAAAAAGATAGC 58.437 33.333 12.42 0.00 0.00 2.97
3568 4213 3.771577 AGTCAACCACCAGTTCTTAGG 57.228 47.619 0.00 0.00 36.18 2.69
3597 4242 2.884012 TGGCCAATATCCAATTGCTACG 59.116 45.455 0.61 0.00 0.00 3.51
3654 4299 2.036098 CCACCCCAGAATGCTGCA 59.964 61.111 4.13 4.13 40.91 4.41
3708 4353 2.014010 AATGTCCACTGCCCATTTGT 57.986 45.000 0.00 0.00 0.00 2.83
3924 4570 3.265791 GAGTTCATGTCAGTAGGCCTTG 58.734 50.000 12.58 3.71 0.00 3.61
3965 4611 7.500227 CACCATCACTTATTTGATCATAGTGGT 59.500 37.037 19.22 13.79 33.74 4.16
3966 4612 7.716560 TCACCATCACTTATTTGATCATAGTGG 59.283 37.037 19.22 11.37 33.74 4.00
4000 4646 9.098355 CTTCTATCATGAACGGAACTCAATAAA 57.902 33.333 0.00 0.00 0.00 1.40
4005 4651 5.661056 ACTTCTATCATGAACGGAACTCA 57.339 39.130 0.00 0.00 0.00 3.41
4063 4709 3.222173 TGTTAGGTTCAGCATGTTGGT 57.778 42.857 9.87 0.00 37.40 3.67
4067 4713 5.009631 TGCTAAATGTTAGGTTCAGCATGT 58.990 37.500 0.00 0.00 37.40 3.21
4070 4716 4.651778 ACTGCTAAATGTTAGGTTCAGCA 58.348 39.130 0.00 0.00 36.25 4.41
4137 4783 3.067011 TGTGGGTCCTACCTCACAG 57.933 57.895 13.16 0.00 41.33 3.66
4175 4821 1.297364 GCGGGGTAGTAGCCAACAA 59.703 57.895 19.76 0.00 37.54 2.83
4466 5170 2.293677 TCAGACAGACACACACACAC 57.706 50.000 0.00 0.00 0.00 3.82
4467 5171 4.664150 TTATCAGACAGACACACACACA 57.336 40.909 0.00 0.00 0.00 3.72
4468 5172 5.984233 TTTTATCAGACAGACACACACAC 57.016 39.130 0.00 0.00 0.00 3.82
4469 5173 6.368791 GCTATTTTATCAGACAGACACACACA 59.631 38.462 0.00 0.00 0.00 3.72
4470 5174 6.368791 TGCTATTTTATCAGACAGACACACAC 59.631 38.462 0.00 0.00 0.00 3.82
4471 5175 6.463360 TGCTATTTTATCAGACAGACACACA 58.537 36.000 0.00 0.00 0.00 3.72
4472 5176 6.968131 TGCTATTTTATCAGACAGACACAC 57.032 37.500 0.00 0.00 0.00 3.82
4473 5177 9.665719 TTTATGCTATTTTATCAGACAGACACA 57.334 29.630 0.00 0.00 0.00 3.72
4520 5228 5.297547 GTGGATCTTTATGCTCCGTATTGA 58.702 41.667 0.00 0.00 33.84 2.57
4535 5243 1.584724 ATTGGAGACCGGTGGATCTT 58.415 50.000 14.63 0.00 0.00 2.40
4667 5382 3.002791 TCGAAGGTGAGATGACAATTGC 58.997 45.455 5.05 0.00 0.00 3.56
4689 5404 5.948742 TGTTGTCCATCCACTGATGTATA 57.051 39.130 2.24 0.00 45.78 1.47


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.