Multiple sequence alignment - TraesCS6D01G003900

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G003900 chr6D 100.000 6720 0 0 1 6720 2052430 2045711 0.000000e+00 12410.0
1 TraesCS6D01G003900 chr6D 89.052 1160 87 11 5574 6719 2090463 2089330 0.000000e+00 1402.0
2 TraesCS6D01G003900 chr6D 78.300 553 78 23 5582 6106 472766270 472765732 1.090000e-82 318.0
3 TraesCS6D01G003900 chr6D 90.000 110 7 3 560 665 36125538 36125429 9.090000e-29 139.0
4 TraesCS6D01G003900 chr6D 92.857 70 4 1 5484 5553 2091687 2091619 4.290000e-17 100.0
5 TraesCS6D01G003900 chr6A 95.162 2067 65 7 3524 5556 814191 816256 0.000000e+00 3230.0
6 TraesCS6D01G003900 chr6A 91.174 1473 71 27 1975 3425 812568 814003 0.000000e+00 1945.0
7 TraesCS6D01G003900 chr6A 93.871 930 33 7 956 1882 811556 812464 0.000000e+00 1380.0
8 TraesCS6D01G003900 chr6A 86.422 545 33 10 1 545 810740 811243 5.890000e-155 558.0
9 TraesCS6D01G003900 chr6A 94.706 170 8 1 658 826 811276 811445 5.170000e-66 263.0
10 TraesCS6D01G003900 chr6A 78.873 213 24 9 460 669 584949399 584949205 2.540000e-24 124.0
11 TraesCS6D01G003900 chr6A 94.828 58 3 0 3429 3486 814042 814099 2.580000e-14 91.6
12 TraesCS6D01G003900 chr6B 92.385 1983 93 15 3549 5499 4514704 4516660 0.000000e+00 2772.0
13 TraesCS6D01G003900 chr6B 90.434 1568 73 26 1957 3486 4513042 4514570 0.000000e+00 1993.0
14 TraesCS6D01G003900 chr6B 94.025 887 41 5 839 1719 4508252 4509132 0.000000e+00 1334.0
15 TraesCS6D01G003900 chr6B 91.575 273 21 2 554 826 4507925 4508195 6.360000e-100 375.0
16 TraesCS6D01G003900 chr6B 92.748 262 12 4 1 261 4507238 4507493 8.230000e-99 372.0
17 TraesCS6D01G003900 chr6B 84.307 274 25 4 276 546 4507480 4507738 1.120000e-62 252.0
18 TraesCS6D01G003900 chr6B 89.091 165 12 6 5361 5522 4820507 4820668 4.110000e-47 200.0
19 TraesCS6D01G003900 chr6B 77.378 389 32 25 2888 3243 4656277 4656642 5.350000e-41 180.0
20 TraesCS6D01G003900 chr6B 86.538 156 8 4 1728 1882 4512802 4512945 6.980000e-35 159.0
21 TraesCS6D01G003900 chr6B 89.286 112 8 4 558 665 75683529 75683418 3.270000e-28 137.0
22 TraesCS6D01G003900 chr6B 95.000 40 1 1 3481 3520 4514605 4514643 2.020000e-05 62.1
23 TraesCS6D01G003900 chr3D 85.626 1294 168 15 4016 5299 18908653 18909938 0.000000e+00 1343.0
24 TraesCS6D01G003900 chr3D 84.645 1296 179 17 4016 5299 18801284 18802571 0.000000e+00 1273.0
25 TraesCS6D01G003900 chr3D 87.034 1126 137 8 4016 5134 18952656 18953779 0.000000e+00 1262.0
26 TraesCS6D01G003900 chr3D 78.620 594 102 20 1091 1670 17373413 17373995 2.960000e-98 370.0
27 TraesCS6D01G003900 chr3D 78.295 129 20 6 470 592 613625339 613625465 7.230000e-10 76.8
28 TraesCS6D01G003900 chr7B 84.992 1266 170 16 4016 5271 64321601 64322856 0.000000e+00 1267.0
29 TraesCS6D01G003900 chr3A 84.586 1291 173 15 4016 5299 26427625 26428896 0.000000e+00 1258.0
30 TraesCS6D01G003900 chr3A 77.280 647 124 16 1011 1640 26448290 26448930 6.410000e-95 359.0
31 TraesCS6D01G003900 chr3A 89.706 68 7 0 474 541 12052314 12052381 3.340000e-13 87.9
32 TraesCS6D01G003900 chr3B 84.419 1290 183 16 4021 5299 29781938 29783220 0.000000e+00 1253.0
33 TraesCS6D01G003900 chr3B 84.353 1291 176 15 4016 5299 29734486 29735757 0.000000e+00 1242.0
34 TraesCS6D01G003900 chr3B 84.826 1239 175 11 4041 5272 30207349 30208581 0.000000e+00 1234.0
35 TraesCS6D01G003900 chr3B 80.208 576 78 21 4928 5480 30443728 30444290 3.780000e-107 399.0
36 TraesCS6D01G003900 chr3B 81.796 412 72 3 1228 1638 30506685 30507094 6.450000e-90 342.0
37 TraesCS6D01G003900 chr3B 77.205 601 118 13 1084 1676 30494760 30495349 3.880000e-87 333.0
38 TraesCS6D01G003900 chr3B 89.474 95 9 1 3215 3309 29616671 29616764 1.180000e-22 119.0
39 TraesCS6D01G003900 chr3B 87.654 81 6 3 469 547 787821111 787821033 2.580000e-14 91.6
40 TraesCS6D01G003900 chr3B 74.231 260 45 15 1388 1633 24933744 24933995 9.280000e-14 89.8
41 TraesCS6D01G003900 chr3B 87.719 57 6 1 2876 2932 545194481 545194426 1.560000e-06 65.8
42 TraesCS6D01G003900 chr1B 82.478 565 73 10 5582 6126 41841348 41841906 7.890000e-129 472.0
43 TraesCS6D01G003900 chr1D 81.593 565 77 10 5582 6126 26269410 26268853 6.180000e-120 442.0
44 TraesCS6D01G003900 chrUn 78.750 560 105 10 1091 1640 37954533 37955088 4.950000e-96 363.0
45 TraesCS6D01G003900 chrUn 78.881 554 103 10 1097 1640 340707393 340706844 4.950000e-96 363.0
46 TraesCS6D01G003900 chrUn 94.521 73 4 0 472 544 75440122 75440050 5.510000e-21 113.0
47 TraesCS6D01G003900 chr7A 79.212 457 69 11 5582 6018 41047984 41047534 1.830000e-75 294.0
48 TraesCS6D01G003900 chr7D 78.337 457 73 12 5582 6018 41601059 41600609 8.590000e-69 272.0
49 TraesCS6D01G003900 chr4A 79.213 356 65 6 5582 5934 648794524 648794175 8.710000e-59 239.0
50 TraesCS6D01G003900 chr4A 76.733 202 29 15 471 664 741985008 741985199 5.550000e-16 97.1
51 TraesCS6D01G003900 chr2D 89.024 82 8 1 466 547 155056445 155056525 4.290000e-17 100.0
52 TraesCS6D01G003900 chr5A 85.263 95 11 3 459 551 216689659 216689752 2.000000e-15 95.3
53 TraesCS6D01G003900 chr5B 86.207 58 6 1 2873 2930 327201143 327201198 2.020000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G003900 chr6D 2045711 2052430 6719 True 12410.0000 12410 100.000000 1 6720 1 chr6D.!!$R1 6719
1 TraesCS6D01G003900 chr6D 2089330 2091687 2357 True 751.0000 1402 90.954500 5484 6719 2 chr6D.!!$R4 1235
2 TraesCS6D01G003900 chr6D 472765732 472766270 538 True 318.0000 318 78.300000 5582 6106 1 chr6D.!!$R3 524
3 TraesCS6D01G003900 chr6A 810740 816256 5516 False 1244.6000 3230 92.693833 1 5556 6 chr6A.!!$F1 5555
4 TraesCS6D01G003900 chr6B 4507238 4516660 9422 False 914.8875 2772 90.876500 1 5499 8 chr6B.!!$F3 5498
5 TraesCS6D01G003900 chr3D 18908653 18909938 1285 False 1343.0000 1343 85.626000 4016 5299 1 chr3D.!!$F3 1283
6 TraesCS6D01G003900 chr3D 18801284 18802571 1287 False 1273.0000 1273 84.645000 4016 5299 1 chr3D.!!$F2 1283
7 TraesCS6D01G003900 chr3D 18952656 18953779 1123 False 1262.0000 1262 87.034000 4016 5134 1 chr3D.!!$F4 1118
8 TraesCS6D01G003900 chr3D 17373413 17373995 582 False 370.0000 370 78.620000 1091 1670 1 chr3D.!!$F1 579
9 TraesCS6D01G003900 chr7B 64321601 64322856 1255 False 1267.0000 1267 84.992000 4016 5271 1 chr7B.!!$F1 1255
10 TraesCS6D01G003900 chr3A 26427625 26428896 1271 False 1258.0000 1258 84.586000 4016 5299 1 chr3A.!!$F2 1283
11 TraesCS6D01G003900 chr3A 26448290 26448930 640 False 359.0000 359 77.280000 1011 1640 1 chr3A.!!$F3 629
12 TraesCS6D01G003900 chr3B 29781938 29783220 1282 False 1253.0000 1253 84.419000 4021 5299 1 chr3B.!!$F4 1278
13 TraesCS6D01G003900 chr3B 29734486 29735757 1271 False 1242.0000 1242 84.353000 4016 5299 1 chr3B.!!$F3 1283
14 TraesCS6D01G003900 chr3B 30207349 30208581 1232 False 1234.0000 1234 84.826000 4041 5272 1 chr3B.!!$F5 1231
15 TraesCS6D01G003900 chr3B 30443728 30444290 562 False 399.0000 399 80.208000 4928 5480 1 chr3B.!!$F6 552
16 TraesCS6D01G003900 chr3B 30494760 30495349 589 False 333.0000 333 77.205000 1084 1676 1 chr3B.!!$F7 592
17 TraesCS6D01G003900 chr1B 41841348 41841906 558 False 472.0000 472 82.478000 5582 6126 1 chr1B.!!$F1 544
18 TraesCS6D01G003900 chr1D 26268853 26269410 557 True 442.0000 442 81.593000 5582 6126 1 chr1D.!!$R1 544
19 TraesCS6D01G003900 chrUn 37954533 37955088 555 False 363.0000 363 78.750000 1091 1640 1 chrUn.!!$F1 549
20 TraesCS6D01G003900 chrUn 340706844 340707393 549 True 363.0000 363 78.881000 1097 1640 1 chrUn.!!$R2 543

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
552 565 0.041386 AACTAACCTCTCCCGCCTCT 59.959 55.0 0.0 0.0 0.0 3.69 F
1841 5747 0.107081 CCGCCCCGTAACCATGAATA 59.893 55.0 0.0 0.0 0.0 1.75 F
2178 6133 0.034059 CGCCACTTCACCAGAACTCT 59.966 55.0 0.0 0.0 0.0 3.24 F
3064 7071 0.107508 CATTGCGGTCTGAGTCCCAT 60.108 55.0 0.0 0.0 0.0 4.00 F
3253 7260 0.323360 TGCTAGTGGGGAAATGGCAC 60.323 55.0 0.0 0.0 0.0 5.01 F
3574 7695 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.0 0.0 0.0 0.0 3.72 F
4934 9102 0.720027 CTGCGAGCATGTGAAGTCAG 59.280 55.0 0.0 0.0 0.0 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2055 6003 0.035630 CAGGGAGCTGTCAAGGAAGG 60.036 60.000 0.0 0.0 0.00 3.46 R
3559 7675 0.167908 CCACACACACACACACACAC 59.832 55.000 0.0 0.0 0.00 3.82 R
3560 7676 0.957888 CCCACACACACACACACACA 60.958 55.000 0.0 0.0 0.00 3.72 R
3936 8071 2.825861 AAGAGTACGAGGCGGAAAAA 57.174 45.000 0.0 0.0 0.00 1.94 R
4072 8237 3.181493 GGATGCCTCATCATCACACAAAC 60.181 47.826 8.8 0.0 43.44 2.93 R
5548 9740 0.463620 ACCGCCAGCAACAAACATTT 59.536 45.000 0.0 0.0 0.00 2.32 R
5739 11072 0.108615 CCAGCAGGAGTAACTCACCG 60.109 60.000 0.0 0.0 36.89 4.94 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 2.892025 CTCCTTCTTGGGGGCATTG 58.108 57.895 0.00 0.00 36.20 2.82
39 40 3.762407 TTGTCTTGGACGAGAAATGGA 57.238 42.857 0.00 0.00 34.95 3.41
44 45 3.578716 TCTTGGACGAGAAATGGAGAACT 59.421 43.478 0.00 0.00 0.00 3.01
45 46 4.770531 TCTTGGACGAGAAATGGAGAACTA 59.229 41.667 0.00 0.00 0.00 2.24
50 51 6.153851 TGGACGAGAAATGGAGAACTATTGTA 59.846 38.462 0.00 0.00 0.00 2.41
60 61 6.548321 TGGAGAACTATTGTATTTGTGGGTT 58.452 36.000 0.00 0.00 0.00 4.11
87 88 5.413833 AGCATGTCACAAGTCAGGATTTTAG 59.586 40.000 0.00 0.00 0.00 1.85
93 94 7.338196 TGTCACAAGTCAGGATTTTAGAAACAA 59.662 33.333 0.00 0.00 0.00 2.83
148 149 2.125912 GACCAGTGACGAGCGCAT 60.126 61.111 11.47 0.00 0.00 4.73
257 258 4.458989 GGTTGTGCTGGACAAATATCTTCA 59.541 41.667 16.42 0.00 46.30 3.02
260 261 5.559770 TGTGCTGGACAAATATCTTCAGAA 58.440 37.500 0.00 0.00 0.00 3.02
261 262 5.645067 TGTGCTGGACAAATATCTTCAGAAG 59.355 40.000 3.45 3.45 0.00 2.85
262 263 4.637534 TGCTGGACAAATATCTTCAGAAGC 59.362 41.667 5.15 0.00 0.00 3.86
263 264 4.036144 GCTGGACAAATATCTTCAGAAGCC 59.964 45.833 5.15 0.00 0.00 4.35
264 265 4.526970 TGGACAAATATCTTCAGAAGCCC 58.473 43.478 5.15 0.00 0.00 5.19
265 266 3.885901 GGACAAATATCTTCAGAAGCCCC 59.114 47.826 5.15 0.00 0.00 5.80
266 267 3.545703 ACAAATATCTTCAGAAGCCCCG 58.454 45.455 5.15 0.00 0.00 5.73
267 268 3.199946 ACAAATATCTTCAGAAGCCCCGA 59.800 43.478 5.15 0.00 0.00 5.14
268 269 4.199310 CAAATATCTTCAGAAGCCCCGAA 58.801 43.478 5.15 0.00 0.00 4.30
269 270 4.503714 AATATCTTCAGAAGCCCCGAAA 57.496 40.909 5.15 0.00 0.00 3.46
270 271 2.879103 ATCTTCAGAAGCCCCGAAAA 57.121 45.000 5.15 0.00 0.00 2.29
271 272 2.649531 TCTTCAGAAGCCCCGAAAAA 57.350 45.000 5.15 0.00 0.00 1.94
308 309 5.415077 CAGAAGAATCCAACTGCTGAAGAAT 59.585 40.000 0.00 0.00 42.01 2.40
350 351 9.995003 TTTTATTTTTGCCAATGAACATCTACT 57.005 25.926 0.00 0.00 0.00 2.57
435 436 0.387239 GCACTGCCGTTTCAATGTCC 60.387 55.000 0.00 0.00 0.00 4.02
478 479 5.240183 GCCTCTGTGTGCATATCAATAATGT 59.760 40.000 0.00 0.00 0.00 2.71
479 480 6.427853 GCCTCTGTGTGCATATCAATAATGTA 59.572 38.462 0.00 0.00 0.00 2.29
485 486 7.430793 TGTGTGCATATCAATAATGTAAAACGC 59.569 33.333 0.00 0.00 0.00 4.84
500 501 3.313274 AAACGCACAAAGAGTTACACG 57.687 42.857 0.00 0.00 39.45 4.49
501 502 0.580104 ACGCACAAAGAGTTACACGC 59.420 50.000 0.00 0.00 0.00 5.34
502 503 0.579630 CGCACAAAGAGTTACACGCA 59.420 50.000 0.00 0.00 0.00 5.24
503 504 1.004398 CGCACAAAGAGTTACACGCAA 60.004 47.619 0.00 0.00 0.00 4.85
504 505 2.349438 CGCACAAAGAGTTACACGCAAT 60.349 45.455 0.00 0.00 0.00 3.56
505 506 3.628017 GCACAAAGAGTTACACGCAATT 58.372 40.909 0.00 0.00 0.00 2.32
506 507 4.609559 CGCACAAAGAGTTACACGCAATTA 60.610 41.667 0.00 0.00 0.00 1.40
507 508 4.611366 GCACAAAGAGTTACACGCAATTAC 59.389 41.667 0.00 0.00 0.00 1.89
508 509 5.743467 CACAAAGAGTTACACGCAATTACA 58.257 37.500 0.00 0.00 0.00 2.41
509 510 6.370593 CACAAAGAGTTACACGCAATTACAT 58.629 36.000 0.00 0.00 0.00 2.29
546 559 7.242322 TCTTTCTTTCTAACTAACCTCTCCC 57.758 40.000 0.00 0.00 0.00 4.30
547 560 5.656213 TTCTTTCTAACTAACCTCTCCCG 57.344 43.478 0.00 0.00 0.00 5.14
552 565 0.041386 AACTAACCTCTCCCGCCTCT 59.959 55.000 0.00 0.00 0.00 3.69
553 566 0.041386 ACTAACCTCTCCCGCCTCTT 59.959 55.000 0.00 0.00 0.00 2.85
554 567 0.747852 CTAACCTCTCCCGCCTCTTC 59.252 60.000 0.00 0.00 0.00 2.87
555 568 0.686769 TAACCTCTCCCGCCTCTTCC 60.687 60.000 0.00 0.00 0.00 3.46
556 569 3.157949 CCTCTCCCGCCTCTTCCC 61.158 72.222 0.00 0.00 0.00 3.97
557 570 3.157949 CTCTCCCGCCTCTTCCCC 61.158 72.222 0.00 0.00 0.00 4.81
609 799 3.724209 CCTCCTCCCCTTAATCTCCAATT 59.276 47.826 0.00 0.00 0.00 2.32
619 809 8.981659 CCCCTTAATCTCCAATTAAAACTCATT 58.018 33.333 0.00 0.00 0.00 2.57
650 840 9.353431 TGTAAATCCCGTGTAACTCTATGTATA 57.647 33.333 0.00 0.00 31.75 1.47
692 882 6.209589 TGCATATACCCTTCTGTCTCTCATAC 59.790 42.308 0.00 0.00 0.00 2.39
695 885 4.054359 ACCCTTCTGTCTCTCATACAGT 57.946 45.455 0.00 0.00 43.88 3.55
701 891 5.568685 TCTGTCTCTCATACAGTTAGCAC 57.431 43.478 0.00 0.00 43.88 4.40
705 895 3.377485 TCTCTCATACAGTTAGCACGGAC 59.623 47.826 0.00 0.00 0.00 4.79
826 1017 2.758979 GGGTCGAGTCAATCTTAGTCCA 59.241 50.000 0.00 0.00 0.00 4.02
828 1019 3.192844 GGTCGAGTCAATCTTAGTCCACA 59.807 47.826 0.00 0.00 0.00 4.17
829 1020 4.142138 GGTCGAGTCAATCTTAGTCCACAT 60.142 45.833 0.00 0.00 0.00 3.21
830 1021 5.038033 GTCGAGTCAATCTTAGTCCACATC 58.962 45.833 0.00 0.00 0.00 3.06
831 1022 4.705023 TCGAGTCAATCTTAGTCCACATCA 59.295 41.667 0.00 0.00 0.00 3.07
833 1024 6.045318 CGAGTCAATCTTAGTCCACATCAAT 58.955 40.000 0.00 0.00 0.00 2.57
835 1026 7.706607 CGAGTCAATCTTAGTCCACATCAATTA 59.293 37.037 0.00 0.00 0.00 1.40
836 1027 9.383519 GAGTCAATCTTAGTCCACATCAATTAA 57.616 33.333 0.00 0.00 0.00 1.40
837 1028 9.911788 AGTCAATCTTAGTCCACATCAATTAAT 57.088 29.630 0.00 0.00 0.00 1.40
888 1123 3.919554 AGAATTCTATCCTCCATTCCCCC 59.080 47.826 6.06 0.00 0.00 5.40
896 1131 0.978146 CTCCATTCCCCCGTCTCACT 60.978 60.000 0.00 0.00 0.00 3.41
897 1132 1.221840 CCATTCCCCCGTCTCACTG 59.778 63.158 0.00 0.00 0.00 3.66
905 1140 1.208052 CCCCGTCTCACTGTCATTCAT 59.792 52.381 0.00 0.00 0.00 2.57
923 1158 7.552687 GTCATTCATTTGTCTTGGTACCATCTA 59.447 37.037 17.17 0.00 0.00 1.98
929 1164 6.770746 TTGTCTTGGTACCATCTAGAGTAC 57.229 41.667 17.17 11.92 38.49 2.73
948 1183 4.639310 AGTACGTACTAAGTCATCACCAGG 59.361 45.833 26.36 0.00 34.13 4.45
949 1184 3.693807 ACGTACTAAGTCATCACCAGGA 58.306 45.455 0.00 0.00 0.00 3.86
950 1185 3.442977 ACGTACTAAGTCATCACCAGGAC 59.557 47.826 0.00 0.00 0.00 3.85
1050 1291 8.256611 TGCTGTGTGTATCTTTCTTTCTTATC 57.743 34.615 0.00 0.00 0.00 1.75
1068 1309 1.302511 CGCAGCCACTAAACCAGGT 60.303 57.895 0.00 0.00 0.00 4.00
1316 1557 1.540363 GGACTTCAACAGTTCGAGCCA 60.540 52.381 0.00 0.00 35.01 4.75
1414 1655 4.284490 AGAACCTCATCTTCTACAACTGCA 59.716 41.667 0.00 0.00 0.00 4.41
1479 1720 1.385528 GGAACAACACCTTTGTCCGT 58.614 50.000 0.00 0.00 33.55 4.69
1519 1760 2.046023 CAGGCGGGATGAACAGCA 60.046 61.111 0.00 0.00 0.00 4.41
1679 1920 5.171339 AGTGGTAAGCTCACTCATCAAAT 57.829 39.130 0.83 0.00 41.10 2.32
1680 1921 6.299805 AGTGGTAAGCTCACTCATCAAATA 57.700 37.500 0.83 0.00 41.10 1.40
1681 1922 6.711277 AGTGGTAAGCTCACTCATCAAATAA 58.289 36.000 0.83 0.00 41.10 1.40
1682 1923 7.341805 AGTGGTAAGCTCACTCATCAAATAAT 58.658 34.615 0.83 0.00 41.10 1.28
1723 5629 2.496470 GGTTCCATTCTCGTCCACTACT 59.504 50.000 0.00 0.00 0.00 2.57
1724 5630 3.056035 GGTTCCATTCTCGTCCACTACTT 60.056 47.826 0.00 0.00 0.00 2.24
1725 5631 4.159135 GGTTCCATTCTCGTCCACTACTTA 59.841 45.833 0.00 0.00 0.00 2.24
1726 5632 5.337009 GGTTCCATTCTCGTCCACTACTTAA 60.337 44.000 0.00 0.00 0.00 1.85
1740 5646 5.799936 CCACTACTTAATTTGCACATTTCCG 59.200 40.000 2.94 0.00 0.00 4.30
1750 5656 2.007608 GCACATTTCCGTTACTCCTCC 58.992 52.381 0.00 0.00 0.00 4.30
1751 5657 2.629051 CACATTTCCGTTACTCCTCCC 58.371 52.381 0.00 0.00 0.00 4.30
1752 5658 2.236395 CACATTTCCGTTACTCCTCCCT 59.764 50.000 0.00 0.00 0.00 4.20
1753 5659 2.500504 ACATTTCCGTTACTCCTCCCTC 59.499 50.000 0.00 0.00 0.00 4.30
1754 5660 1.565067 TTTCCGTTACTCCTCCCTCC 58.435 55.000 0.00 0.00 0.00 4.30
1806 5712 1.614850 GGATTTGGTTACCGGGCTGAA 60.615 52.381 6.32 0.00 0.00 3.02
1807 5713 2.164338 GATTTGGTTACCGGGCTGAAA 58.836 47.619 6.32 0.00 0.00 2.69
1808 5714 2.068834 TTTGGTTACCGGGCTGAAAA 57.931 45.000 6.32 0.00 0.00 2.29
1809 5715 2.296073 TTGGTTACCGGGCTGAAAAT 57.704 45.000 6.32 0.00 0.00 1.82
1810 5716 2.296073 TGGTTACCGGGCTGAAAATT 57.704 45.000 6.32 0.00 0.00 1.82
1841 5747 0.107081 CCGCCCCGTAACCATGAATA 59.893 55.000 0.00 0.00 0.00 1.75
1842 5748 1.475392 CCGCCCCGTAACCATGAATAA 60.475 52.381 0.00 0.00 0.00 1.40
1843 5749 2.500229 CGCCCCGTAACCATGAATAAT 58.500 47.619 0.00 0.00 0.00 1.28
1852 5758 6.444633 CGTAACCATGAATAATCTCGGTACT 58.555 40.000 0.00 0.00 32.57 2.73
1865 5771 4.278310 TCTCGGTACTCCATGAGAAATCA 58.722 43.478 0.00 0.00 34.72 2.57
1882 5788 7.178983 TGAGAAATCATCTTACCCAGCAAAAAT 59.821 33.333 0.00 0.00 38.96 1.82
1885 5793 8.922931 AAATCATCTTACCCAGCAAAAATTTT 57.077 26.923 0.00 0.00 0.00 1.82
1887 5795 9.435688 AATCATCTTACCCAGCAAAAATTTTAC 57.564 29.630 3.34 0.00 0.00 2.01
1888 5796 7.382898 TCATCTTACCCAGCAAAAATTTTACC 58.617 34.615 3.34 0.00 0.00 2.85
1889 5797 5.774630 TCTTACCCAGCAAAAATTTTACCG 58.225 37.500 3.34 0.00 0.00 4.02
1890 5798 5.535406 TCTTACCCAGCAAAAATTTTACCGA 59.465 36.000 3.34 0.00 0.00 4.69
1891 5799 3.985008 ACCCAGCAAAAATTTTACCGAC 58.015 40.909 3.34 0.00 0.00 4.79
1892 5800 2.983803 CCCAGCAAAAATTTTACCGACG 59.016 45.455 3.34 0.00 0.00 5.12
1893 5801 3.551250 CCCAGCAAAAATTTTACCGACGT 60.551 43.478 3.34 0.00 0.00 4.34
1894 5802 3.423867 CCAGCAAAAATTTTACCGACGTG 59.576 43.478 3.34 0.00 0.00 4.49
1895 5803 4.283678 CAGCAAAAATTTTACCGACGTGA 58.716 39.130 3.34 0.00 0.00 4.35
1896 5804 4.145756 CAGCAAAAATTTTACCGACGTGAC 59.854 41.667 3.34 0.00 0.00 3.67
1897 5805 3.422876 GCAAAAATTTTACCGACGTGACC 59.577 43.478 3.34 0.00 0.00 4.02
1898 5806 4.599047 CAAAAATTTTACCGACGTGACCA 58.401 39.130 3.34 0.00 0.00 4.02
1899 5807 3.883631 AAATTTTACCGACGTGACCAC 57.116 42.857 0.00 0.00 0.00 4.16
1920 5828 5.212194 CACGTCCACTACTTTTGAATTTGG 58.788 41.667 0.00 0.00 0.00 3.28
1930 5838 6.607735 ACTTTTGAATTTGGCTGAATGTTG 57.392 33.333 0.00 0.00 0.00 3.33
1933 5841 7.172019 ACTTTTGAATTTGGCTGAATGTTGATC 59.828 33.333 0.00 0.00 0.00 2.92
1945 5853 6.198966 GCTGAATGTTGATCGAGTTTTGTTTT 59.801 34.615 0.00 0.00 0.00 2.43
1949 5857 9.829637 GAATGTTGATCGAGTTTTGTTTTAAAC 57.170 29.630 0.20 0.20 38.09 2.01
1952 5860 7.273815 TGTTGATCGAGTTTTGTTTTAAACCAC 59.726 33.333 5.32 0.25 38.49 4.16
1953 5861 5.966503 TGATCGAGTTTTGTTTTAAACCACG 59.033 36.000 5.32 1.10 38.49 4.94
1954 5862 4.660105 TCGAGTTTTGTTTTAAACCACGG 58.340 39.130 5.32 0.00 38.49 4.94
1973 5920 3.604875 GGTGGTAACCAGAAATCTCGA 57.395 47.619 0.00 0.00 46.75 4.04
1979 5926 4.037208 GGTAACCAGAAATCTCGATCGGTA 59.963 45.833 16.41 3.86 0.00 4.02
2034 5982 2.404215 CTTGGTAACCACTCACTCACG 58.596 52.381 0.00 0.00 30.78 4.35
2040 5988 1.956170 CCACTCACTCACGTGTGGC 60.956 63.158 20.62 0.00 41.97 5.01
2055 6003 3.062466 GGCGAGGGCAAAGGTTCC 61.062 66.667 0.00 0.00 42.47 3.62
2056 6004 3.062466 GCGAGGGCAAAGGTTCCC 61.062 66.667 0.00 0.00 42.94 3.97
2096 6044 0.528924 TGGACACATTCTACCGACGG 59.471 55.000 13.61 13.61 0.00 4.79
2136 6084 9.581289 CCTCCATTTATTTGTATTGGTACCATA 57.419 33.333 17.17 7.34 0.00 2.74
2145 6093 8.610248 TTTGTATTGGTACCATATAATCCACG 57.390 34.615 17.17 0.00 0.00 4.94
2146 6094 6.167685 TGTATTGGTACCATATAATCCACGC 58.832 40.000 17.17 4.16 0.00 5.34
2147 6095 4.691326 TTGGTACCATATAATCCACGCA 57.309 40.909 17.17 0.00 0.00 5.24
2178 6133 0.034059 CGCCACTTCACCAGAACTCT 59.966 55.000 0.00 0.00 0.00 3.24
2189 6144 4.770531 TCACCAGAACTCTTATCTTTCCGA 59.229 41.667 0.00 0.00 0.00 4.55
2190 6145 5.422331 TCACCAGAACTCTTATCTTTCCGAT 59.578 40.000 0.00 0.00 36.11 4.18
2191 6146 6.605995 TCACCAGAACTCTTATCTTTCCGATA 59.394 38.462 0.00 0.00 33.48 2.92
2192 6147 6.920758 CACCAGAACTCTTATCTTTCCGATAG 59.079 42.308 0.00 0.00 36.06 2.08
2290 6245 3.122369 AAGCACAAGAAGCCTGCTT 57.878 47.368 3.62 3.62 44.59 3.91
2397 6352 1.152984 CAGGTCCACTGCACCAACA 60.153 57.895 0.00 0.00 40.97 3.33
2453 6408 1.476471 GGGCTCCAGATCCTCAACATG 60.476 57.143 0.00 0.00 0.00 3.21
2762 6754 4.174704 TGCTATCTTCCTTCCGGTACTA 57.825 45.455 0.00 0.00 0.00 1.82
2774 6766 1.735376 CGGTACTAGCAGCATCCGGT 61.735 60.000 0.00 0.00 35.25 5.28
2870 6869 0.676184 GTGGTGAGCTCACTCTGTCA 59.324 55.000 38.17 26.99 45.73 3.58
2907 6910 4.633547 GGATTACCCCGGCCTCTA 57.366 61.111 0.00 0.00 0.00 2.43
3063 7070 1.296392 CATTGCGGTCTGAGTCCCA 59.704 57.895 0.00 0.00 0.00 4.37
3064 7071 0.107508 CATTGCGGTCTGAGTCCCAT 60.108 55.000 0.00 0.00 0.00 4.00
3065 7072 1.138859 CATTGCGGTCTGAGTCCCATA 59.861 52.381 0.00 0.00 0.00 2.74
3086 7093 7.431249 CCATATTCAAACAAGCTTGAGCATAT 58.569 34.615 32.50 20.45 45.16 1.78
3087 7094 8.570488 CCATATTCAAACAAGCTTGAGCATATA 58.430 33.333 32.50 20.85 45.16 0.86
3179 7186 8.668510 AGCACAAAATTACTAGTGAGATATGG 57.331 34.615 5.39 0.00 33.99 2.74
3253 7260 0.323360 TGCTAGTGGGGAAATGGCAC 60.323 55.000 0.00 0.00 0.00 5.01
3358 7380 1.174712 ACAATGGACAGGTGCAGCAC 61.175 55.000 17.97 17.97 33.50 4.40
3371 7393 1.229428 GCAGCACTTGTTAGACTGCA 58.771 50.000 8.32 0.00 45.70 4.41
3372 7394 1.069636 GCAGCACTTGTTAGACTGCAC 60.070 52.381 8.32 0.00 45.70 4.57
3425 7451 9.681062 CATTCCAAAACTCCTTATTACCTTCTA 57.319 33.333 0.00 0.00 0.00 2.10
3488 7549 9.958180 TCCTACAATCATCTAGAAATGAAAACA 57.042 29.630 0.00 0.00 39.04 2.83
3520 7620 4.456911 ACATGTAATTCAGGCACTTCACTG 59.543 41.667 0.00 0.00 34.60 3.66
3553 7669 9.605955 TTTTGTATATTTCGTTGTCAGATGTTG 57.394 29.630 0.00 0.00 0.00 3.33
3554 7670 7.899178 TGTATATTTCGTTGTCAGATGTTGT 57.101 32.000 0.00 0.00 0.00 3.32
3555 7671 7.738345 TGTATATTTCGTTGTCAGATGTTGTG 58.262 34.615 0.00 0.00 0.00 3.33
3556 7672 6.801539 ATATTTCGTTGTCAGATGTTGTGT 57.198 33.333 0.00 0.00 0.00 3.72
3557 7673 3.942539 TTCGTTGTCAGATGTTGTGTG 57.057 42.857 0.00 0.00 0.00 3.82
3559 7675 2.607180 TCGTTGTCAGATGTTGTGTGTG 59.393 45.455 0.00 0.00 0.00 3.82
3560 7676 2.351418 CGTTGTCAGATGTTGTGTGTGT 59.649 45.455 0.00 0.00 0.00 3.72
3561 7677 3.683989 GTTGTCAGATGTTGTGTGTGTG 58.316 45.455 0.00 0.00 0.00 3.82
3562 7678 2.984562 TGTCAGATGTTGTGTGTGTGT 58.015 42.857 0.00 0.00 0.00 3.72
3563 7679 2.677337 TGTCAGATGTTGTGTGTGTGTG 59.323 45.455 0.00 0.00 0.00 3.82
3574 7695 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
3647 7782 2.715046 ACTACCATGGACATGTTGCTG 58.285 47.619 21.47 0.00 37.11 4.41
3896 8031 1.392589 GGGCATGATACAACACTGGG 58.607 55.000 0.00 0.00 0.00 4.45
3936 8071 6.958192 TCTATGACCTTTACCTTGTTCCTACT 59.042 38.462 0.00 0.00 0.00 2.57
3992 8127 8.902540 ACTTACATGTTTGAAACTACTGATGA 57.097 30.769 2.30 0.00 0.00 2.92
4072 8237 1.329906 CAGCCTTGCTCTTTCTATGCG 59.670 52.381 0.00 0.00 36.40 4.73
4934 9102 0.720027 CTGCGAGCATGTGAAGTCAG 59.280 55.000 0.00 0.00 0.00 3.51
5009 9177 8.573885 GTGCATACAAGTAGTACCTATGTATCA 58.426 37.037 15.67 14.06 35.59 2.15
5093 9261 3.193479 CCTAAGCAAAACTTCCATGGACC 59.807 47.826 15.91 0.00 39.97 4.46
5233 9413 8.503196 CAATATGAGTGTACAAAGTGCAAGTTA 58.497 33.333 0.00 0.00 28.81 2.24
5330 9521 2.729156 GCACTAGATTCGGCAAAGCAAC 60.729 50.000 0.00 0.00 0.00 4.17
5453 9645 7.156876 TCGAAGTTCCATTAATCAAAAGCAT 57.843 32.000 0.00 0.00 0.00 3.79
5460 9652 9.949174 GTTCCATTAATCAAAAGCATTGTTTTT 57.051 25.926 5.50 5.50 0.00 1.94
5580 10907 2.277084 CTGGCGGTGTACATCTTTACC 58.723 52.381 4.28 1.28 0.00 2.85
5651 10981 0.036388 GAGGTCTGGGATTTCGTGCA 60.036 55.000 0.00 0.00 0.00 4.57
5723 11053 1.386533 CATGAAGAGGGTGTGATGGC 58.613 55.000 0.00 0.00 0.00 4.40
5739 11072 4.468689 GCTGTACCTGGGGACGGC 62.469 72.222 18.66 18.66 40.54 5.68
5740 11073 4.143333 CTGTACCTGGGGACGGCG 62.143 72.222 4.80 4.80 34.42 6.46
5748 11081 3.384532 GGGGACGGCGGTGAGTTA 61.385 66.667 13.24 0.00 0.00 2.24
5776 11109 0.249398 GGTCAGCTGTAACGGATGGT 59.751 55.000 14.67 0.00 0.00 3.55
5875 11208 5.964758 TCAAGCAAACTCTTGTTCAACATT 58.035 33.333 0.00 0.00 42.90 2.71
5905 11238 4.621068 CCGACACTAGACGGTTATGTTA 57.379 45.455 15.41 0.00 45.80 2.41
5931 11264 1.615384 GCCTTGCCTTTCATCTGACCT 60.615 52.381 0.00 0.00 0.00 3.85
5968 11320 4.141597 TGAGTGTGGTGGTGTTTCTTATCA 60.142 41.667 0.00 0.00 0.00 2.15
5985 11337 0.814410 TCAGCCTAGCTCTCCGTACG 60.814 60.000 8.69 8.69 36.40 3.67
5986 11338 1.096386 CAGCCTAGCTCTCCGTACGT 61.096 60.000 15.21 0.00 36.40 3.57
5997 11349 1.400846 CTCCGTACGTACATGAGCTGT 59.599 52.381 24.50 0.00 42.13 4.40
5998 11350 1.814394 TCCGTACGTACATGAGCTGTT 59.186 47.619 24.50 0.00 39.39 3.16
6063 11417 7.180408 ACTTAGCCTTTTATCTTAGAGGTGTCA 59.820 37.037 0.00 0.00 0.00 3.58
6083 11441 3.942748 TCAAGTGTGGTGGTGTTTCTTAC 59.057 43.478 0.00 0.00 0.00 2.34
6128 11486 2.469147 CGAGCTGCAGTATGTGTTATCG 59.531 50.000 16.64 7.62 39.31 2.92
6139 11497 2.108168 TGTGTTATCGGCCTAGCTCTT 58.892 47.619 0.00 0.00 0.00 2.85
6150 11508 4.518249 GGCCTAGCTCTTTGTGTATTCTT 58.482 43.478 0.00 0.00 0.00 2.52
6155 11513 6.876257 CCTAGCTCTTTGTGTATTCTTGAACT 59.124 38.462 0.00 0.00 0.00 3.01
6197 11555 6.353951 CCCCTCTTTATATGGTGGTTCTCTTT 60.354 42.308 0.00 0.00 0.00 2.52
6198 11556 7.119387 CCCTCTTTATATGGTGGTTCTCTTTT 58.881 38.462 0.00 0.00 0.00 2.27
6211 11569 8.504815 GGTGGTTCTCTTTTTACTCAATAGTTC 58.495 37.037 0.00 0.00 37.15 3.01
6213 11571 9.273016 TGGTTCTCTTTTTACTCAATAGTTCTG 57.727 33.333 0.00 0.00 37.15 3.02
6245 11603 7.872993 TGACTTGAAGATTTGACTTTATCGAGT 59.127 33.333 0.00 0.00 0.00 4.18
6378 11739 9.566432 AATTATCCTCCTTATTGACTAAGCAAG 57.434 33.333 0.00 0.00 36.30 4.01
6381 11742 7.490657 TCCTCCTTATTGACTAAGCAAGTTA 57.509 36.000 0.00 0.00 39.07 2.24
6384 11745 7.606456 CCTCCTTATTGACTAAGCAAGTTACAA 59.394 37.037 0.00 0.00 39.07 2.41
6392 11753 9.462174 TTGACTAAGCAAGTTACAAATGATTTG 57.538 29.630 15.82 15.82 41.78 2.32
6405 11766 7.452880 ACAAATGATTTGCTTACAAGAGCTA 57.547 32.000 17.19 0.00 44.39 3.32
6415 11776 4.092675 GCTTACAAGAGCTAGCTGTTTCTG 59.907 45.833 24.99 15.97 39.57 3.02
6417 11778 4.342862 ACAAGAGCTAGCTGTTTCTGAA 57.657 40.909 24.99 0.00 0.00 3.02
6428 11789 6.212888 AGCTGTTTCTGAACAACTTTTCAT 57.787 33.333 0.00 0.00 44.65 2.57
6438 11799 9.086336 TCTGAACAACTTTTCATTGAAATGTTC 57.914 29.630 29.26 29.26 43.21 3.18
6450 11811 8.883954 TCATTGAAATGTTCTGTTTGCAATTA 57.116 26.923 0.00 0.00 37.65 1.40
6486 11847 6.524734 TGATTCTATAGCATGTGGTTAGGTG 58.475 40.000 0.00 0.00 0.00 4.00
6492 11853 3.561143 AGCATGTGGTTAGGTGTTGAAA 58.439 40.909 0.00 0.00 0.00 2.69
6495 11856 4.261994 GCATGTGGTTAGGTGTTGAAACAT 60.262 41.667 0.00 0.00 41.59 2.71
6496 11857 5.048364 GCATGTGGTTAGGTGTTGAAACATA 60.048 40.000 0.00 0.00 41.59 2.29
6497 11858 6.378582 CATGTGGTTAGGTGTTGAAACATAC 58.621 40.000 0.00 0.00 41.59 2.39
6498 11859 4.512198 TGTGGTTAGGTGTTGAAACATACG 59.488 41.667 0.00 0.00 41.59 3.06
6536 11897 3.373439 GCTTTTGTGTTGCATTGTTTGGA 59.627 39.130 0.00 0.00 0.00 3.53
6537 11898 4.142730 GCTTTTGTGTTGCATTGTTTGGAA 60.143 37.500 0.00 0.00 32.65 3.53
6538 11899 5.618640 GCTTTTGTGTTGCATTGTTTGGAAA 60.619 36.000 0.00 0.00 37.41 3.13
6539 11900 6.506500 TTTTGTGTTGCATTGTTTGGAAAT 57.493 29.167 0.00 0.00 37.41 2.17
6540 11901 7.615582 TTTTGTGTTGCATTGTTTGGAAATA 57.384 28.000 0.00 0.00 37.41 1.40
6547 11908 9.887629 TGTTGCATTGTTTGGAAATATATCAAT 57.112 25.926 0.00 0.00 37.41 2.57
6574 11935 3.006967 TCACTTCAGCTTCTAACCACCTC 59.993 47.826 0.00 0.00 0.00 3.85
6665 12027 5.183904 AGCAAAAGAAAGGTATCATGGTCAC 59.816 40.000 0.00 0.00 0.00 3.67
6668 12030 2.501723 AGAAAGGTATCATGGTCACGCT 59.498 45.455 0.00 0.00 0.00 5.07
6709 12071 2.093288 CCTCTAGATTCTGCAAGTGCCA 60.093 50.000 0.00 0.00 41.18 4.92
6710 12072 2.935201 CTCTAGATTCTGCAAGTGCCAC 59.065 50.000 0.00 0.00 41.18 5.01
6719 12081 1.462731 GCAAGTGCCACCCATGTTCA 61.463 55.000 0.00 0.00 34.31 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 2.897326 TCTCCATTTCTCGTCCAAGACA 59.103 45.455 0.00 0.00 32.09 3.41
21 22 3.594603 TCTCCATTTCTCGTCCAAGAC 57.405 47.619 0.00 0.00 0.00 3.01
39 40 6.548321 TGGAACCCACAAATACAATAGTTCT 58.452 36.000 0.00 0.00 34.30 3.01
44 45 4.667573 TGCTGGAACCCACAAATACAATA 58.332 39.130 0.00 0.00 0.00 1.90
45 46 3.505386 TGCTGGAACCCACAAATACAAT 58.495 40.909 0.00 0.00 0.00 2.71
50 51 1.895131 GACATGCTGGAACCCACAAAT 59.105 47.619 0.00 0.00 0.00 2.32
60 61 1.271001 CCTGACTTGTGACATGCTGGA 60.271 52.381 0.00 0.00 0.00 3.86
87 88 4.318974 GGTTGATGCATTTGCTGTTGTTTC 60.319 41.667 0.00 0.00 42.66 2.78
93 94 1.246649 TCGGTTGATGCATTTGCTGT 58.753 45.000 0.00 0.00 42.66 4.40
148 149 4.025040 AGCATGGACAGAGACAATTTGA 57.975 40.909 2.79 0.00 0.00 2.69
275 276 7.015001 AGCAGTTGGATTCTTCTGAAGATTTTT 59.985 33.333 19.93 6.65 37.38 1.94
276 277 6.492772 AGCAGTTGGATTCTTCTGAAGATTTT 59.507 34.615 19.93 8.94 37.38 1.82
277 278 6.008960 AGCAGTTGGATTCTTCTGAAGATTT 58.991 36.000 19.93 11.26 37.38 2.17
278 279 5.415077 CAGCAGTTGGATTCTTCTGAAGATT 59.585 40.000 19.93 16.28 37.38 2.40
279 280 4.942483 CAGCAGTTGGATTCTTCTGAAGAT 59.058 41.667 19.93 10.69 37.38 2.40
280 281 4.040829 TCAGCAGTTGGATTCTTCTGAAGA 59.959 41.667 15.82 15.82 33.74 2.87
281 282 4.321718 TCAGCAGTTGGATTCTTCTGAAG 58.678 43.478 11.18 11.18 33.74 3.02
282 283 4.356405 TCAGCAGTTGGATTCTTCTGAA 57.644 40.909 0.00 0.00 33.74 3.02
283 284 4.040829 TCTTCAGCAGTTGGATTCTTCTGA 59.959 41.667 0.00 0.00 34.54 3.27
284 285 4.321718 TCTTCAGCAGTTGGATTCTTCTG 58.678 43.478 0.00 0.00 0.00 3.02
285 286 4.630644 TCTTCAGCAGTTGGATTCTTCT 57.369 40.909 0.00 0.00 0.00 2.85
286 287 5.647225 AGATTCTTCAGCAGTTGGATTCTTC 59.353 40.000 0.00 0.00 0.00 2.87
350 351 9.575868 TGGATGTTACCAAGACAAATTTAACTA 57.424 29.630 0.00 0.00 36.96 2.24
478 479 4.782822 GCGTGTAACTCTTTGTGCGTTTTA 60.783 41.667 0.00 0.00 31.75 1.52
479 480 3.676540 CGTGTAACTCTTTGTGCGTTTT 58.323 40.909 0.00 0.00 31.75 2.43
485 486 5.743467 TGTAATTGCGTGTAACTCTTTGTG 58.257 37.500 0.00 0.00 31.75 3.33
500 501 9.525409 AAAGAATTCTAATCAGCATGTAATTGC 57.475 29.630 8.75 0.00 43.09 3.56
506 507 9.240734 AGAAAGAAAGAATTCTAATCAGCATGT 57.759 29.630 8.75 0.00 45.19 3.21
564 577 1.004979 TCCACCCCGTAAAAATCAGGG 59.995 52.381 0.00 0.00 43.88 4.45
566 579 2.089201 GGTCCACCCCGTAAAAATCAG 58.911 52.381 0.00 0.00 0.00 2.90
580 770 2.190904 TAAGGGGAGGAGGGGTCCAC 62.191 65.000 0.00 0.00 37.83 4.02
591 781 7.834181 TGAGTTTTAATTGGAGATTAAGGGGAG 59.166 37.037 0.00 0.00 0.00 4.30
619 809 6.996509 AGAGTTACACGGGATTTACAAACTA 58.003 36.000 0.00 0.00 0.00 2.24
650 840 3.245518 TGCACACGAGTAATGCTACAT 57.754 42.857 11.34 0.00 40.13 2.29
652 842 5.345202 GGTATATGCACACGAGTAATGCTAC 59.655 44.000 11.34 6.93 40.13 3.58
692 882 1.805945 GAGCGGTCCGTGCTAACTG 60.806 63.158 13.94 0.00 44.18 3.16
695 885 0.947180 GTTTGAGCGGTCCGTGCTAA 60.947 55.000 13.94 5.79 44.18 3.09
701 891 1.153628 CTAGGGTTTGAGCGGTCCG 60.154 63.158 12.85 6.99 0.00 4.79
705 895 2.124695 GGGCTAGGGTTTGAGCGG 60.125 66.667 0.00 0.00 39.72 5.52
826 1017 9.246670 TCATTCAGGAGACAAATTAATTGATGT 57.753 29.630 0.39 3.31 41.85 3.06
835 1026 9.086758 AGAGAAAAATCATTCAGGAGACAAATT 57.913 29.630 0.00 0.00 0.00 1.82
836 1027 8.647256 AGAGAAAAATCATTCAGGAGACAAAT 57.353 30.769 0.00 0.00 0.00 2.32
837 1028 8.469309 AAGAGAAAAATCATTCAGGAGACAAA 57.531 30.769 0.00 0.00 0.00 2.83
838 1029 8.469309 AAAGAGAAAAATCATTCAGGAGACAA 57.531 30.769 0.00 0.00 0.00 3.18
840 1031 8.571336 TCAAAAGAGAAAAATCATTCAGGAGAC 58.429 33.333 0.00 0.00 0.00 3.36
888 1123 4.687948 AGACAAATGAATGACAGTGAGACG 59.312 41.667 0.00 0.00 0.00 4.18
896 1131 5.380900 TGGTACCAAGACAAATGAATGACA 58.619 37.500 13.60 0.00 0.00 3.58
897 1132 5.957842 TGGTACCAAGACAAATGAATGAC 57.042 39.130 13.60 0.00 0.00 3.06
905 1140 6.127814 CGTACTCTAGATGGTACCAAGACAAA 60.128 42.308 20.76 2.42 36.05 2.83
923 1158 5.494724 TGGTGATGACTTAGTACGTACTCT 58.505 41.667 30.53 14.90 37.73 3.24
929 1164 3.181489 GGTCCTGGTGATGACTTAGTACG 60.181 52.174 0.00 0.00 0.00 3.67
980 1215 4.692625 ACATTGAAACTACTACTGCTGCTG 59.307 41.667 4.89 4.89 0.00 4.41
1050 1291 1.302511 ACCTGGTTTAGTGGCTGCG 60.303 57.895 0.00 0.00 0.00 5.18
1316 1557 1.228862 GGGACATGGCAACCTTGGT 60.229 57.895 0.00 0.00 33.63 3.67
1361 1602 2.234143 GGCTTATTGAGAATGGAGGCC 58.766 52.381 0.00 0.00 0.00 5.19
1438 1679 1.610673 ACATCGTCTCCACCAGCCT 60.611 57.895 0.00 0.00 0.00 4.58
1479 1720 2.527123 TTGTACCACCCTCCCGCA 60.527 61.111 0.00 0.00 0.00 5.69
1519 1760 0.179000 CAGCCCTCCAAAGCGTATCT 59.821 55.000 0.00 0.00 0.00 1.98
1620 1861 2.827642 GGCTGCCATGTGAGGAGC 60.828 66.667 15.17 5.56 33.69 4.70
1679 1920 7.682628 ACCGGCCTAATACTAGCAATTAATTA 58.317 34.615 0.00 0.00 0.00 1.40
1680 1921 6.540083 ACCGGCCTAATACTAGCAATTAATT 58.460 36.000 0.00 0.00 0.00 1.40
1681 1922 6.123045 ACCGGCCTAATACTAGCAATTAAT 57.877 37.500 0.00 0.00 0.00 1.40
1682 1923 5.556006 ACCGGCCTAATACTAGCAATTAA 57.444 39.130 0.00 0.00 0.00 1.40
1723 5629 6.207810 AGGAGTAACGGAAATGTGCAAATTAA 59.792 34.615 1.59 0.00 0.00 1.40
1724 5630 5.708230 AGGAGTAACGGAAATGTGCAAATTA 59.292 36.000 1.59 0.00 0.00 1.40
1725 5631 4.522789 AGGAGTAACGGAAATGTGCAAATT 59.477 37.500 0.00 0.00 0.00 1.82
1726 5632 4.079253 AGGAGTAACGGAAATGTGCAAAT 58.921 39.130 0.00 0.00 0.00 2.32
1740 5646 0.531200 CACACGGAGGGAGGAGTAAC 59.469 60.000 0.00 0.00 0.00 2.50
1750 5656 0.588252 CAAGAAACAGCACACGGAGG 59.412 55.000 0.00 0.00 0.00 4.30
1751 5657 1.261619 GACAAGAAACAGCACACGGAG 59.738 52.381 0.00 0.00 0.00 4.63
1752 5658 1.295792 GACAAGAAACAGCACACGGA 58.704 50.000 0.00 0.00 0.00 4.69
1753 5659 0.042188 CGACAAGAAACAGCACACGG 60.042 55.000 0.00 0.00 0.00 4.94
1754 5660 0.650512 ACGACAAGAAACAGCACACG 59.349 50.000 0.00 0.00 0.00 4.49
1806 5712 3.078097 GGGCGGCAACCAAATTTAATTT 58.922 40.909 12.47 0.00 0.00 1.82
1807 5713 2.616765 GGGGCGGCAACCAAATTTAATT 60.617 45.455 12.47 0.00 0.00 1.40
1808 5714 1.065782 GGGGCGGCAACCAAATTTAAT 60.066 47.619 12.47 0.00 0.00 1.40
1809 5715 0.321996 GGGGCGGCAACCAAATTTAA 59.678 50.000 12.47 0.00 0.00 1.52
1810 5716 1.878656 CGGGGCGGCAACCAAATTTA 61.879 55.000 12.47 0.00 0.00 1.40
1841 5747 5.363868 TGATTTCTCATGGAGTACCGAGATT 59.636 40.000 0.00 0.00 39.42 2.40
1842 5748 4.895889 TGATTTCTCATGGAGTACCGAGAT 59.104 41.667 0.00 0.00 39.42 2.75
1843 5749 4.278310 TGATTTCTCATGGAGTACCGAGA 58.722 43.478 0.00 0.00 39.42 4.04
1852 5758 5.688500 GCTGGGTAAGATGATTTCTCATGGA 60.689 44.000 0.00 0.00 42.27 3.41
1865 5771 6.209788 TCGGTAAAATTTTTGCTGGGTAAGAT 59.790 34.615 9.06 0.00 0.00 2.40
1892 5800 2.521105 AAAGTAGTGGACGTGGTCAC 57.479 50.000 0.00 0.00 33.68 3.67
1893 5801 2.431419 TCAAAAGTAGTGGACGTGGTCA 59.569 45.455 0.00 0.00 33.68 4.02
1894 5802 3.102052 TCAAAAGTAGTGGACGTGGTC 57.898 47.619 0.00 0.00 0.00 4.02
1895 5803 3.547054 TTCAAAAGTAGTGGACGTGGT 57.453 42.857 0.00 0.00 0.00 4.16
1896 5804 5.212194 CAAATTCAAAAGTAGTGGACGTGG 58.788 41.667 0.00 0.00 0.00 4.94
1897 5805 5.212194 CCAAATTCAAAAGTAGTGGACGTG 58.788 41.667 0.00 0.00 0.00 4.49
1898 5806 4.261447 GCCAAATTCAAAAGTAGTGGACGT 60.261 41.667 0.00 0.00 0.00 4.34
1899 5807 4.023193 AGCCAAATTCAAAAGTAGTGGACG 60.023 41.667 0.00 0.00 0.00 4.79
1900 5808 5.009610 TCAGCCAAATTCAAAAGTAGTGGAC 59.990 40.000 0.00 0.00 0.00 4.02
1901 5809 5.136828 TCAGCCAAATTCAAAAGTAGTGGA 58.863 37.500 0.00 0.00 0.00 4.02
1902 5810 5.452078 TCAGCCAAATTCAAAAGTAGTGG 57.548 39.130 0.00 0.00 0.00 4.00
1903 5811 6.925165 ACATTCAGCCAAATTCAAAAGTAGTG 59.075 34.615 0.00 0.00 0.00 2.74
1904 5812 7.054491 ACATTCAGCCAAATTCAAAAGTAGT 57.946 32.000 0.00 0.00 0.00 2.73
1905 5813 7.652909 TCAACATTCAGCCAAATTCAAAAGTAG 59.347 33.333 0.00 0.00 0.00 2.57
1906 5814 7.495901 TCAACATTCAGCCAAATTCAAAAGTA 58.504 30.769 0.00 0.00 0.00 2.24
1907 5815 6.347696 TCAACATTCAGCCAAATTCAAAAGT 58.652 32.000 0.00 0.00 0.00 2.66
1908 5816 6.847956 TCAACATTCAGCCAAATTCAAAAG 57.152 33.333 0.00 0.00 0.00 2.27
1920 5828 4.787598 ACAAAACTCGATCAACATTCAGC 58.212 39.130 0.00 0.00 0.00 4.26
1930 5838 5.397240 CCGTGGTTTAAAACAAAACTCGATC 59.603 40.000 7.69 0.00 38.98 3.69
1933 5841 4.263443 CACCGTGGTTTAAAACAAAACTCG 59.737 41.667 7.69 6.85 38.98 4.18
1953 5861 3.604875 TCGAGATTTCTGGTTACCACC 57.395 47.619 0.00 0.00 44.56 4.61
1954 5862 3.797256 CGATCGAGATTTCTGGTTACCAC 59.203 47.826 10.26 0.00 0.00 4.16
2034 5982 3.365265 CCTTTGCCCTCGCCACAC 61.365 66.667 0.00 0.00 0.00 3.82
2055 6003 0.035630 CAGGGAGCTGTCAAGGAAGG 60.036 60.000 0.00 0.00 0.00 3.46
2056 6004 0.689623 ACAGGGAGCTGTCAAGGAAG 59.310 55.000 0.00 0.00 30.83 3.46
2057 6005 2.024176 TACAGGGAGCTGTCAAGGAA 57.976 50.000 0.00 0.00 38.64 3.36
2058 6006 1.833630 CATACAGGGAGCTGTCAAGGA 59.166 52.381 0.00 0.00 38.64 3.36
2096 6044 2.766229 GAGGTGAGGAGGAGGGCC 60.766 72.222 0.00 0.00 0.00 5.80
2136 6084 2.548057 CCTATTGCGTTGCGTGGATTAT 59.452 45.455 0.00 0.00 0.00 1.28
2137 6085 1.937223 CCTATTGCGTTGCGTGGATTA 59.063 47.619 0.00 0.00 0.00 1.75
2138 6086 0.732571 CCTATTGCGTTGCGTGGATT 59.267 50.000 0.00 0.00 0.00 3.01
2139 6087 0.392461 ACCTATTGCGTTGCGTGGAT 60.392 50.000 0.00 0.00 0.00 3.41
2140 6088 1.004320 ACCTATTGCGTTGCGTGGA 60.004 52.632 0.00 0.00 0.00 4.02
2141 6089 1.423845 GACCTATTGCGTTGCGTGG 59.576 57.895 0.00 0.00 0.00 4.94
2142 6090 1.058748 CGACCTATTGCGTTGCGTG 59.941 57.895 0.00 0.00 0.00 5.34
2143 6091 2.736682 GCGACCTATTGCGTTGCGT 61.737 57.895 0.00 0.00 31.22 5.24
2144 6092 2.021380 GCGACCTATTGCGTTGCG 59.979 61.111 0.00 0.00 31.22 4.85
2145 6093 2.395360 TGGCGACCTATTGCGTTGC 61.395 57.895 0.00 0.00 39.51 4.17
2146 6094 1.019278 AGTGGCGACCTATTGCGTTG 61.019 55.000 0.00 0.00 35.86 4.10
2147 6095 0.321298 AAGTGGCGACCTATTGCGTT 60.321 50.000 0.00 0.00 35.86 4.84
2178 6133 5.152193 TGGGGACATCTATCGGAAAGATAA 58.848 41.667 0.00 0.00 37.05 1.75
2189 6144 1.492176 CTGCAGGTTGGGGACATCTAT 59.508 52.381 5.57 0.00 42.32 1.98
2190 6145 0.911769 CTGCAGGTTGGGGACATCTA 59.088 55.000 5.57 0.00 42.32 1.98
2191 6146 1.687612 CTGCAGGTTGGGGACATCT 59.312 57.895 5.57 0.00 42.32 2.90
2192 6147 2.048603 GCTGCAGGTTGGGGACATC 61.049 63.158 17.12 0.00 42.32 3.06
2397 6352 0.837260 TACCAAAGGTACGGGGTGCT 60.837 55.000 6.63 0.00 37.09 4.40
2453 6408 2.165319 AGGAACCGTTGCTGTAGAAC 57.835 50.000 4.24 0.00 0.00 3.01
2564 6540 7.044181 TCTGATTCAAGTTGCTAATCGAGAAT 58.956 34.615 10.88 0.00 33.28 2.40
2762 6754 4.479993 GCCTCACCGGATGCTGCT 62.480 66.667 9.46 0.00 32.60 4.24
2774 6766 0.602638 AATCACTTGCGTTCGCCTCA 60.603 50.000 14.44 0.00 0.00 3.86
3016 7022 4.912766 CGATTTCGACCATCTAGACTAAGC 59.087 45.833 0.00 0.00 43.02 3.09
3184 7191 8.646900 CCTCTCTTTACTCTTGCTAGGAATAAT 58.353 37.037 0.00 0.00 0.00 1.28
3195 7202 4.561105 GGTCACACCTCTCTTTACTCTTG 58.439 47.826 0.00 0.00 34.73 3.02
3358 7380 1.452025 CGTGTCGTGCAGTCTAACAAG 59.548 52.381 0.00 0.00 0.00 3.16
3371 7393 2.341257 ACGTCACTAGTATCGTGTCGT 58.659 47.619 18.95 10.07 46.48 4.34
3372 7394 3.793492 TCTACGTCACTAGTATCGTGTCG 59.207 47.826 24.71 13.33 44.98 4.35
3486 7547 7.611467 TGCCTGAATTACATGTCTATCTTTTGT 59.389 33.333 0.00 0.00 0.00 2.83
3488 7549 7.831193 AGTGCCTGAATTACATGTCTATCTTTT 59.169 33.333 0.00 0.00 0.00 2.27
3529 7645 8.227119 CACAACATCTGACAACGAAATATACAA 58.773 33.333 0.00 0.00 0.00 2.41
3544 7660 2.677337 CACACACACACACAACATCTGA 59.323 45.455 0.00 0.00 0.00 3.27
3553 7669 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
3554 7670 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
3555 7671 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
3556 7672 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
3557 7673 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
3559 7675 0.167908 CCACACACACACACACACAC 59.832 55.000 0.00 0.00 0.00 3.82
3560 7676 0.957888 CCCACACACACACACACACA 60.958 55.000 0.00 0.00 0.00 3.72
3561 7677 0.958382 ACCCACACACACACACACAC 60.958 55.000 0.00 0.00 0.00 3.82
3562 7678 0.957888 CACCCACACACACACACACA 60.958 55.000 0.00 0.00 0.00 3.72
3563 7679 0.958382 ACACCCACACACACACACAC 60.958 55.000 0.00 0.00 0.00 3.82
3855 7990 5.642063 CCCGAATAGAGAGTTGCTTGTTTTA 59.358 40.000 0.00 0.00 0.00 1.52
3896 8031 6.335777 AGGTCATAGATTTGCTTGAAATTGC 58.664 36.000 0.00 0.00 34.18 3.56
3936 8071 2.825861 AAGAGTACGAGGCGGAAAAA 57.174 45.000 0.00 0.00 0.00 1.94
4072 8237 3.181493 GGATGCCTCATCATCACACAAAC 60.181 47.826 8.80 0.00 43.44 2.93
4934 9102 8.816640 TTTTGCTATTTCCTCAATTTCACTTC 57.183 30.769 0.00 0.00 0.00 3.01
5009 9177 6.027482 TCTAGAACTTTGGTTATGGTAGGGT 58.973 40.000 0.00 0.00 35.58 4.34
5233 9413 7.205515 AGGATCTTGTCTTCAGAAATGGTAT 57.794 36.000 0.00 0.00 0.00 2.73
5320 9501 3.002553 CCATTGAACTTTGTTGCTTTGCC 59.997 43.478 0.00 0.00 0.00 4.52
5330 9521 9.689976 TGTTTAATGATACACCATTGAACTTTG 57.310 29.630 18.35 0.00 45.42 2.77
5364 9556 9.121517 CAGCTTTAAATCAAGTTTGTACATGAG 57.878 33.333 0.00 0.00 35.66 2.90
5366 9558 7.148755 GCCAGCTTTAAATCAAGTTTGTACATG 60.149 37.037 0.00 0.00 0.00 3.21
5386 9578 1.352083 TGTTTCAGGTAGAGCCAGCT 58.648 50.000 0.00 0.00 40.61 4.24
5428 9620 7.156876 TGCTTTTGATTAATGGAACTTCGAT 57.843 32.000 0.00 0.00 0.00 3.59
5535 9727 5.458041 ACAAACATTTCATGTCCTTCCAG 57.542 39.130 0.00 0.00 44.07 3.86
5536 9728 5.599732 CAACAAACATTTCATGTCCTTCCA 58.400 37.500 0.00 0.00 44.07 3.53
5544 9736 2.156117 CGCCAGCAACAAACATTTCATG 59.844 45.455 0.00 0.00 0.00 3.07
5548 9740 0.463620 ACCGCCAGCAACAAACATTT 59.536 45.000 0.00 0.00 0.00 2.32
5580 10907 1.452110 TGGCCGTGTCTTCATCATTG 58.548 50.000 0.00 0.00 0.00 2.82
5651 10981 1.468520 CAACGGGCAATTCAACTCGAT 59.531 47.619 0.00 0.00 0.00 3.59
5684 11014 1.200948 GCCAAGAAGATTGACACTGGC 59.799 52.381 0.00 0.00 0.00 4.85
5723 11053 4.143333 CGCCGTCCCCAGGTACAG 62.143 72.222 0.00 0.00 0.00 2.74
5739 11072 0.108615 CCAGCAGGAGTAACTCACCG 60.109 60.000 0.00 0.00 36.89 4.94
5740 11073 0.977395 ACCAGCAGGAGTAACTCACC 59.023 55.000 0.35 0.00 38.69 4.02
5741 11074 1.618837 TGACCAGCAGGAGTAACTCAC 59.381 52.381 0.35 0.00 38.69 3.51
5763 11096 3.188460 CCTGAAACAACCATCCGTTACAG 59.812 47.826 0.00 0.00 31.77 2.74
5769 11102 2.226330 TCAACCTGAAACAACCATCCG 58.774 47.619 0.00 0.00 0.00 4.18
5776 11109 3.501828 CCATCGACATCAACCTGAAACAA 59.498 43.478 0.00 0.00 0.00 2.83
5875 11208 2.486982 CGTCTAGTGTCGGAAAGAAGGA 59.513 50.000 0.00 0.00 0.00 3.36
5905 11238 3.132289 CAGATGAAAGGCAAGGCATTCAT 59.868 43.478 21.68 21.68 43.76 2.57
5931 11264 6.072008 CCACCACACTCAACAATAAATCATCA 60.072 38.462 0.00 0.00 0.00 3.07
5968 11320 0.467384 TACGTACGGAGAGCTAGGCT 59.533 55.000 21.06 0.00 43.88 4.58
5985 11337 9.314321 AGTTAATACATACAACAGCTCATGTAC 57.686 33.333 9.66 0.00 43.00 2.90
5997 11349 6.783977 ACCGGGGATCTAGTTAATACATACAA 59.216 38.462 6.32 0.00 0.00 2.41
5998 11350 6.209986 CACCGGGGATCTAGTTAATACATACA 59.790 42.308 6.32 0.00 0.00 2.29
6063 11417 3.284617 GGTAAGAAACACCACCACACTT 58.715 45.455 0.00 0.00 36.01 3.16
6083 11441 0.885196 GATACAGAGAGCTAGGCCGG 59.115 60.000 0.00 0.00 0.00 6.13
6128 11486 4.143986 AGAATACACAAAGAGCTAGGCC 57.856 45.455 0.00 0.00 0.00 5.19
6139 11497 9.513906 TCCAATATTGAGTTCAAGAATACACAA 57.486 29.630 17.23 0.00 39.47 3.33
6170 11528 5.235534 AGAACCACCATATAAAGAGGGGAT 58.764 41.667 0.00 0.00 0.00 3.85
6174 11532 8.581253 AAAAAGAGAACCACCATATAAAGAGG 57.419 34.615 0.00 0.00 0.00 3.69
6211 11569 9.956720 AAGTCAAATCTTCAAGTCAATAAACAG 57.043 29.630 0.00 0.00 0.00 3.16
6224 11582 8.833231 AAGAACTCGATAAAGTCAAATCTTCA 57.167 30.769 0.00 0.00 0.00 3.02
6245 11603 6.599244 CACCAGGCAATCTCTACATAAAAGAA 59.401 38.462 0.00 0.00 0.00 2.52
6309 11668 9.559958 CAGCTTAAGAAACAACATATAAACAGG 57.440 33.333 6.67 0.00 0.00 4.00
6312 11671 9.262472 CGTCAGCTTAAGAAACAACATATAAAC 57.738 33.333 6.67 0.00 0.00 2.01
6321 11682 6.612247 TTTCATCGTCAGCTTAAGAAACAA 57.388 33.333 6.67 0.00 0.00 2.83
6325 11686 5.582269 CCTCATTTCATCGTCAGCTTAAGAA 59.418 40.000 6.67 0.00 0.00 2.52
6337 11698 4.763793 AGGATAATTGGCCTCATTTCATCG 59.236 41.667 3.32 0.00 0.00 3.84
6378 11739 7.809806 AGCTCTTGTAAGCAAATCATTTGTAAC 59.190 33.333 11.80 8.01 45.00 2.50
6381 11742 6.336842 AGCTCTTGTAAGCAAATCATTTGT 57.663 33.333 11.80 0.00 45.00 2.83
6384 11745 5.884792 AGCTAGCTCTTGTAAGCAAATCATT 59.115 36.000 12.68 0.00 45.00 2.57
6392 11753 4.092675 CAGAAACAGCTAGCTCTTGTAAGC 59.907 45.833 16.15 4.48 42.82 3.09
6415 11776 8.872845 ACAGAACATTTCAATGAAAAGTTGTTC 58.127 29.630 28.45 28.45 41.39 3.18
6417 11778 8.776376 AACAGAACATTTCAATGAAAAGTTGT 57.224 26.923 26.99 21.95 41.39 3.32
6438 11799 8.980610 TCATGAACAAGAATTAATTGCAAACAG 58.019 29.630 1.71 0.00 0.00 3.16
6471 11832 2.949177 TCAACACCTAACCACATGCT 57.051 45.000 0.00 0.00 0.00 3.79
6476 11837 4.512571 ACGTATGTTTCAACACCTAACCAC 59.487 41.667 0.00 0.00 42.51 4.16
6516 11877 5.947228 TTTCCAAACAATGCAACACAAAA 57.053 30.435 0.00 0.00 0.00 2.44
6520 11881 8.700722 TGATATATTTCCAAACAATGCAACAC 57.299 30.769 0.00 0.00 0.00 3.32
6539 11900 9.842775 AGAAGCTGAAGTGAAATGATTGATATA 57.157 29.630 0.00 0.00 0.00 0.86
6540 11901 8.749026 AGAAGCTGAAGTGAAATGATTGATAT 57.251 30.769 0.00 0.00 0.00 1.63
6547 11908 5.470098 GTGGTTAGAAGCTGAAGTGAAATGA 59.530 40.000 0.00 0.00 0.00 2.57
6574 11935 9.529325 AAATATCACATGAAGCATTGATTCTTG 57.471 29.630 21.89 21.89 38.46 3.02
6645 12007 3.689649 GCGTGACCATGATACCTTTCTTT 59.310 43.478 0.00 0.00 0.00 2.52
6665 12027 0.742281 CACAATCTGGGACCTGAGCG 60.742 60.000 4.28 0.78 0.00 5.03
6668 12030 0.984230 GGACACAATCTGGGACCTGA 59.016 55.000 0.22 0.22 32.82 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.