Multiple sequence alignment - TraesCS6D01G003700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G003700 chr6D 100.000 3095 0 0 1 3095 1998988 1995894 0.000000e+00 5716.0
1 TraesCS6D01G003700 chr6D 83.855 1214 143 31 775 1948 2025239 2024039 0.000000e+00 1107.0
2 TraesCS6D01G003700 chr6D 76.125 1089 190 48 965 2020 38635807 38636858 9.900000e-140 507.0
3 TraesCS6D01G003700 chr6D 76.105 1063 191 39 991 2020 38816366 38817398 5.960000e-137 497.0
4 TraesCS6D01G003700 chr6D 77.535 868 160 25 965 1825 38875582 38876421 9.970000e-135 490.0
5 TraesCS6D01G003700 chr6D 86.029 136 19 0 1945 2080 2023667 2023532 2.490000e-31 147.0
6 TraesCS6D01G003700 chr6A 84.576 1569 166 31 563 2081 846182 847724 0.000000e+00 1487.0
7 TraesCS6D01G003700 chr6A 88.563 647 60 6 2455 3093 903014 903654 0.000000e+00 773.0
8 TraesCS6D01G003700 chr6A 77.281 1162 191 48 958 2081 51397109 51398235 1.580000e-172 616.0
9 TraesCS6D01G003700 chr6A 83.736 455 47 10 2075 2523 815694 816127 3.720000e-109 405.0
10 TraesCS6D01G003700 chr6B 84.915 1465 147 31 680 2081 4589842 4591295 0.000000e+00 1413.0
11 TraesCS6D01G003700 chr6B 84.642 1172 130 17 959 2081 4812869 4814039 0.000000e+00 1122.0
12 TraesCS6D01G003700 chr6B 83.777 789 86 19 1321 2080 4718992 4719767 0.000000e+00 710.0
13 TraesCS6D01G003700 chr6B 89.114 395 23 10 562 945 4810201 4810586 1.000000e-129 473.0
14 TraesCS6D01G003700 chr6B 75.800 1062 187 41 991 2020 89903897 89904920 1.000000e-129 473.0
15 TraesCS6D01G003700 chr6B 82.989 435 44 13 2100 2527 4516182 4516593 1.750000e-97 366.0
16 TraesCS6D01G003700 chr6B 87.281 228 29 0 1854 2081 4630843 4631070 8.510000e-66 261.0
17 TraesCS6D01G003700 chr6B 85.876 177 22 2 1553 1726 4542016 4542192 5.270000e-43 185.0
18 TraesCS6D01G003700 chr6B 92.958 71 5 0 1723 1793 4544646 4544716 1.520000e-18 104.0
19 TraesCS6D01G003700 chr6B 88.506 87 8 2 2945 3030 702420894 702420809 1.520000e-18 104.0
20 TraesCS6D01G003700 chr3A 97.312 558 13 2 1 558 143948478 143947923 0.000000e+00 946.0
21 TraesCS6D01G003700 chr2D 97.312 558 13 1 1 558 6476792 6476237 0.000000e+00 946.0
22 TraesCS6D01G003700 chr2A 97.133 558 15 1 1 558 738037302 738037858 0.000000e+00 941.0
23 TraesCS6D01G003700 chr5A 96.416 558 19 1 1 558 516822795 516823351 0.000000e+00 918.0
24 TraesCS6D01G003700 chr2B 97.015 536 16 0 1 536 769239924 769239389 0.000000e+00 902.0
25 TraesCS6D01G003700 chr7B 95.668 554 19 2 1 549 706451056 706450503 0.000000e+00 885.0
26 TraesCS6D01G003700 chr7B 75.330 227 50 6 1847 2070 47786176 47785953 1.520000e-18 104.0
27 TraesCS6D01G003700 chrUn 90.761 552 42 6 1 549 299823026 299822481 0.000000e+00 728.0
28 TraesCS6D01G003700 chrUn 90.761 552 42 6 1 549 309591652 309591107 0.000000e+00 728.0
29 TraesCS6D01G003700 chrUn 75.979 1149 209 44 965 2080 76982328 76981214 5.880000e-147 531.0
30 TraesCS6D01G003700 chr3D 88.214 560 59 6 1 558 517478955 517479509 0.000000e+00 662.0
31 TraesCS6D01G003700 chr4A 79.147 211 33 6 2800 3008 56175157 56175358 5.380000e-28 135.0
32 TraesCS6D01G003700 chr7D 76.757 185 37 5 1847 2028 94013024 94012843 7.060000e-17 99.0
33 TraesCS6D01G003700 chr7D 93.182 44 3 0 1847 1890 94088507 94088464 7.160000e-07 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G003700 chr6D 1995894 1998988 3094 True 5716.0 5716 100.000 1 3095 1 chr6D.!!$R1 3094
1 TraesCS6D01G003700 chr6D 2023532 2025239 1707 True 627.0 1107 84.942 775 2080 2 chr6D.!!$R2 1305
2 TraesCS6D01G003700 chr6D 38635807 38636858 1051 False 507.0 507 76.125 965 2020 1 chr6D.!!$F1 1055
3 TraesCS6D01G003700 chr6D 38816366 38817398 1032 False 497.0 497 76.105 991 2020 1 chr6D.!!$F2 1029
4 TraesCS6D01G003700 chr6D 38875582 38876421 839 False 490.0 490 77.535 965 1825 1 chr6D.!!$F3 860
5 TraesCS6D01G003700 chr6A 846182 847724 1542 False 1487.0 1487 84.576 563 2081 1 chr6A.!!$F2 1518
6 TraesCS6D01G003700 chr6A 903014 903654 640 False 773.0 773 88.563 2455 3093 1 chr6A.!!$F3 638
7 TraesCS6D01G003700 chr6A 51397109 51398235 1126 False 616.0 616 77.281 958 2081 1 chr6A.!!$F4 1123
8 TraesCS6D01G003700 chr6B 4589842 4591295 1453 False 1413.0 1413 84.915 680 2081 1 chr6B.!!$F2 1401
9 TraesCS6D01G003700 chr6B 4810201 4814039 3838 False 797.5 1122 86.878 562 2081 2 chr6B.!!$F7 1519
10 TraesCS6D01G003700 chr6B 4718992 4719767 775 False 710.0 710 83.777 1321 2080 1 chr6B.!!$F4 759
11 TraesCS6D01G003700 chr6B 89903897 89904920 1023 False 473.0 473 75.800 991 2020 1 chr6B.!!$F5 1029
12 TraesCS6D01G003700 chr3A 143947923 143948478 555 True 946.0 946 97.312 1 558 1 chr3A.!!$R1 557
13 TraesCS6D01G003700 chr2D 6476237 6476792 555 True 946.0 946 97.312 1 558 1 chr2D.!!$R1 557
14 TraesCS6D01G003700 chr2A 738037302 738037858 556 False 941.0 941 97.133 1 558 1 chr2A.!!$F1 557
15 TraesCS6D01G003700 chr5A 516822795 516823351 556 False 918.0 918 96.416 1 558 1 chr5A.!!$F1 557
16 TraesCS6D01G003700 chr2B 769239389 769239924 535 True 902.0 902 97.015 1 536 1 chr2B.!!$R1 535
17 TraesCS6D01G003700 chr7B 706450503 706451056 553 True 885.0 885 95.668 1 549 1 chr7B.!!$R2 548
18 TraesCS6D01G003700 chrUn 299822481 299823026 545 True 728.0 728 90.761 1 549 1 chrUn.!!$R2 548
19 TraesCS6D01G003700 chrUn 309591107 309591652 545 True 728.0 728 90.761 1 549 1 chrUn.!!$R3 548
20 TraesCS6D01G003700 chrUn 76981214 76982328 1114 True 531.0 531 75.979 965 2080 1 chrUn.!!$R1 1115
21 TraesCS6D01G003700 chr3D 517478955 517479509 554 False 662.0 662 88.214 1 558 1 chr3D.!!$F1 557

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
931 1015 0.597637 GCATCACCGTACTCCATCCG 60.598 60.0 0.0 0.0 0.0 4.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2671 5535 0.037975 GCAGCCAATGTGGGACTTTG 60.038 55.0 0.0 0.0 38.19 2.77 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
185 186 5.248934 TCGGTTTCTCCTAATTTTCCCACTA 59.751 40.000 0.00 0.00 0.00 2.74
549 564 8.315391 TCAACAGAGATCATTTTACTGTTCAG 57.685 34.615 0.00 0.00 45.70 3.02
562 577 3.111853 CTGTTCAGGCACAGTTACAGA 57.888 47.619 0.00 0.00 39.59 3.41
563 578 3.062763 CTGTTCAGGCACAGTTACAGAG 58.937 50.000 0.00 0.00 39.59 3.35
564 579 2.698274 TGTTCAGGCACAGTTACAGAGA 59.302 45.455 0.00 0.00 0.00 3.10
565 580 3.060602 GTTCAGGCACAGTTACAGAGAC 58.939 50.000 0.00 0.00 0.00 3.36
566 581 1.269723 TCAGGCACAGTTACAGAGACG 59.730 52.381 0.00 0.00 0.00 4.18
567 582 1.269723 CAGGCACAGTTACAGAGACGA 59.730 52.381 0.00 0.00 0.00 4.20
568 583 1.269998 AGGCACAGTTACAGAGACGAC 59.730 52.381 0.00 0.00 0.00 4.34
569 584 1.000607 GGCACAGTTACAGAGACGACA 60.001 52.381 0.00 0.00 0.00 4.35
570 585 2.052157 GCACAGTTACAGAGACGACAC 58.948 52.381 0.00 0.00 0.00 3.67
571 586 2.307929 CACAGTTACAGAGACGACACG 58.692 52.381 0.00 0.00 0.00 4.49
572 587 1.328439 CAGTTACAGAGACGACACGC 58.672 55.000 0.00 0.00 0.00 5.34
593 608 3.498834 CGCAGGCACGCAAGCATA 61.499 61.111 5.90 0.00 45.62 3.14
617 632 0.677731 AGCACCGGTGTGAATCCATG 60.678 55.000 33.92 6.73 45.76 3.66
622 637 1.739466 CCGGTGTGAATCCATGTCAAG 59.261 52.381 0.00 0.00 0.00 3.02
628 643 2.487762 GTGAATCCATGTCAAGCGGAAA 59.512 45.455 0.00 0.00 31.18 3.13
648 663 2.125350 GCAGCCTCCTCGGAACTG 60.125 66.667 9.99 9.99 33.85 3.16
869 910 0.941542 GACTCGTCTCATCCTCTCCG 59.058 60.000 0.00 0.00 0.00 4.63
891 964 1.005630 CCGGCGATCCTCCATTCTC 60.006 63.158 9.30 0.00 0.00 2.87
912 985 1.945394 GGATCAGTAAGTGCATGCAGG 59.055 52.381 23.41 6.84 0.00 4.85
931 1015 0.597637 GCATCACCGTACTCCATCCG 60.598 60.000 0.00 0.00 0.00 4.18
940 1026 3.119814 CCGTACTCCATCCGATATCACAG 60.120 52.174 3.12 0.00 0.00 3.66
951 3300 5.079643 TCCGATATCACAGGATTCTCATCA 58.920 41.667 3.12 0.00 34.89 3.07
956 3305 4.115401 TCACAGGATTCTCATCAGTTCG 57.885 45.455 0.00 0.00 0.00 3.95
960 3315 5.461407 CACAGGATTCTCATCAGTTCGTATG 59.539 44.000 0.00 0.00 0.00 2.39
993 3352 4.123506 GCAGCTCTACTATTGGAGGTTTC 58.876 47.826 0.00 0.00 38.08 2.78
1141 3500 2.241176 ACCAAAGAGACAACTCCCAACA 59.759 45.455 0.00 0.00 43.53 3.33
1253 3627 4.040461 AGACTTCATCTCGGTTTTCCTTGA 59.960 41.667 0.00 0.00 37.95 3.02
1254 3628 4.714632 ACTTCATCTCGGTTTTCCTTGAA 58.285 39.130 0.00 0.00 37.95 2.69
1265 3639 4.377124 GGTTTTCCTTGAACTCGACGAATC 60.377 45.833 0.00 1.07 36.94 2.52
1378 3758 4.558226 TGTTACTTCCATGATCACTGCT 57.442 40.909 0.00 0.00 0.00 4.24
1382 3762 4.558226 ACTTCCATGATCACTGCTGTAA 57.442 40.909 0.00 0.00 0.00 2.41
1385 3765 4.492494 TCCATGATCACTGCTGTAATGT 57.508 40.909 0.00 0.00 0.00 2.71
1386 3766 4.847198 TCCATGATCACTGCTGTAATGTT 58.153 39.130 0.00 0.00 0.00 2.71
1392 3772 5.939296 TGATCACTGCTGTAATGTTGATGAA 59.061 36.000 0.00 0.00 0.00 2.57
1477 3866 1.813786 TCGTCATACGGTGTGATGTCA 59.186 47.619 21.53 5.87 42.81 3.58
1494 3889 2.223852 TGTCATTGTCAAGGACGACGAA 60.224 45.455 21.64 4.86 44.62 3.85
1500 3895 2.492088 TGTCAAGGACGACGAAGATGAT 59.508 45.455 0.00 0.00 38.84 2.45
1525 3920 5.083821 AGGACTATTATGAAGAGGAGGAGC 58.916 45.833 0.00 0.00 0.00 4.70
1527 3922 5.483583 GGACTATTATGAAGAGGAGGAGCAT 59.516 44.000 0.00 0.00 0.00 3.79
1557 3973 1.790123 CGTCCGTTCATCAAATTGCCG 60.790 52.381 0.00 0.00 0.00 5.69
1633 4049 1.270412 ACATTACGTTCGAGGTTGGCA 60.270 47.619 0.00 0.00 0.00 4.92
1691 4107 2.426024 CCCGATCTACCGTCTTCAAGAA 59.574 50.000 0.00 0.00 0.00 2.52
1732 4157 1.741770 GAGGGCGCTGTTACACCAG 60.742 63.158 8.56 0.00 35.49 4.00
1878 4366 0.819259 TGCTTGAAGCTGCGGAAAGT 60.819 50.000 18.94 0.00 42.97 2.66
1896 4384 7.148306 GCGGAAAGTTATGATCTCCAAAAGTTA 60.148 37.037 0.00 0.00 0.00 2.24
1960 4824 2.099756 GACAGGGTTGCAGGCATTATTC 59.900 50.000 0.00 0.00 0.00 1.75
1962 4826 2.762327 CAGGGTTGCAGGCATTATTCTT 59.238 45.455 0.00 0.00 0.00 2.52
1964 4828 2.543641 GGTTGCAGGCATTATTCTTGC 58.456 47.619 0.00 0.00 39.41 4.01
1972 4836 1.672881 GCATTATTCTTGCCGCTGAGT 59.327 47.619 0.00 0.00 33.95 3.41
2044 4908 1.268692 ACACGAGTTTGCACAATGCTG 60.269 47.619 2.02 0.00 45.31 4.41
2049 4913 3.547813 CGAGTTTGCACAATGCTGTTACA 60.548 43.478 2.02 0.00 45.31 2.41
2081 4945 4.155709 CTGGAGCAGATAATCAGGACCTA 58.844 47.826 0.00 0.00 32.44 3.08
2082 4946 4.756564 TGGAGCAGATAATCAGGACCTAT 58.243 43.478 0.00 0.00 0.00 2.57
2083 4947 4.529769 TGGAGCAGATAATCAGGACCTATG 59.470 45.833 0.00 0.00 0.00 2.23
2084 4948 4.530161 GGAGCAGATAATCAGGACCTATGT 59.470 45.833 0.00 0.00 0.00 2.29
2085 4949 5.717178 GGAGCAGATAATCAGGACCTATGTA 59.283 44.000 0.00 0.00 0.00 2.29
2086 4950 6.382570 GGAGCAGATAATCAGGACCTATGTAT 59.617 42.308 0.00 0.00 0.00 2.29
2087 4951 7.416964 AGCAGATAATCAGGACCTATGTATC 57.583 40.000 0.00 1.75 0.00 2.24
2088 4952 6.956435 AGCAGATAATCAGGACCTATGTATCA 59.044 38.462 15.05 0.00 0.00 2.15
2089 4953 7.038659 GCAGATAATCAGGACCTATGTATCAC 58.961 42.308 15.05 7.17 0.00 3.06
2090 4954 7.551585 CAGATAATCAGGACCTATGTATCACC 58.448 42.308 15.05 0.00 0.00 4.02
2091 4955 6.670027 AGATAATCAGGACCTATGTATCACCC 59.330 42.308 15.05 0.00 0.00 4.61
2092 4956 3.993658 TCAGGACCTATGTATCACCCT 57.006 47.619 0.00 0.00 0.00 4.34
2093 4957 5.616975 ATCAGGACCTATGTATCACCCTA 57.383 43.478 0.00 0.00 0.00 3.53
2094 4958 5.412617 TCAGGACCTATGTATCACCCTAA 57.587 43.478 0.00 0.00 0.00 2.69
2095 4959 5.145564 TCAGGACCTATGTATCACCCTAAC 58.854 45.833 0.00 0.00 0.00 2.34
2096 4960 4.899457 CAGGACCTATGTATCACCCTAACA 59.101 45.833 0.00 0.00 0.00 2.41
2097 4961 5.544176 CAGGACCTATGTATCACCCTAACAT 59.456 44.000 0.00 0.00 37.58 2.71
2098 4962 6.724441 CAGGACCTATGTATCACCCTAACATA 59.276 42.308 0.00 0.00 35.54 2.29
2099 4963 7.234782 CAGGACCTATGTATCACCCTAACATAA 59.765 40.741 0.00 0.00 36.08 1.90
2100 4964 7.234988 AGGACCTATGTATCACCCTAACATAAC 59.765 40.741 0.00 0.00 36.08 1.89
2101 4965 7.312415 ACCTATGTATCACCCTAACATAACC 57.688 40.000 0.00 0.00 36.08 2.85
2102 4966 6.847567 ACCTATGTATCACCCTAACATAACCA 59.152 38.462 0.00 0.00 36.08 3.67
2103 4967 7.348801 ACCTATGTATCACCCTAACATAACCAA 59.651 37.037 0.00 0.00 36.08 3.67
2104 4968 8.215050 CCTATGTATCACCCTAACATAACCAAA 58.785 37.037 0.00 0.00 36.08 3.28
2105 4969 9.273016 CTATGTATCACCCTAACATAACCAAAG 57.727 37.037 0.00 0.00 36.08 2.77
2106 4970 7.023171 TGTATCACCCTAACATAACCAAAGT 57.977 36.000 0.00 0.00 0.00 2.66
2107 4971 7.463431 TGTATCACCCTAACATAACCAAAGTT 58.537 34.615 0.00 0.00 40.15 2.66
2108 4972 6.834168 ATCACCCTAACATAACCAAAGTTG 57.166 37.500 0.00 0.00 36.68 3.16
2109 4973 5.697067 TCACCCTAACATAACCAAAGTTGT 58.303 37.500 0.00 0.00 36.68 3.32
2110 4974 6.839454 TCACCCTAACATAACCAAAGTTGTA 58.161 36.000 0.00 0.00 36.68 2.41
2111 4975 6.938030 TCACCCTAACATAACCAAAGTTGTAG 59.062 38.462 0.00 0.00 36.68 2.74
2112 4976 6.938030 CACCCTAACATAACCAAAGTTGTAGA 59.062 38.462 0.00 0.00 36.68 2.59
2113 4977 7.446013 CACCCTAACATAACCAAAGTTGTAGAA 59.554 37.037 0.00 0.00 36.68 2.10
2114 4978 8.000127 ACCCTAACATAACCAAAGTTGTAGAAA 59.000 33.333 0.00 0.00 36.68 2.52
2115 4979 9.020731 CCCTAACATAACCAAAGTTGTAGAAAT 57.979 33.333 0.00 0.00 36.68 2.17
2116 4980 9.840427 CCTAACATAACCAAAGTTGTAGAAATG 57.160 33.333 0.00 0.00 36.68 2.32
2120 4984 9.528018 ACATAACCAAAGTTGTAGAAATGTTTG 57.472 29.630 0.00 0.00 36.68 2.93
2121 4985 9.743057 CATAACCAAAGTTGTAGAAATGTTTGA 57.257 29.630 5.42 0.00 36.68 2.69
2122 4986 9.965824 ATAACCAAAGTTGTAGAAATGTTTGAG 57.034 29.630 5.42 0.85 36.68 3.02
2123 4987 6.273071 ACCAAAGTTGTAGAAATGTTTGAGC 58.727 36.000 5.42 0.00 0.00 4.26
2124 4988 5.399301 CCAAAGTTGTAGAAATGTTTGAGCG 59.601 40.000 5.42 0.00 0.00 5.03
2125 4989 6.198687 CAAAGTTGTAGAAATGTTTGAGCGA 58.801 36.000 0.00 0.00 0.00 4.93
2126 4990 6.371809 AAGTTGTAGAAATGTTTGAGCGAA 57.628 33.333 0.00 0.00 0.00 4.70
2127 4991 6.560253 AGTTGTAGAAATGTTTGAGCGAAT 57.440 33.333 0.00 0.00 0.00 3.34
2128 4992 6.603095 AGTTGTAGAAATGTTTGAGCGAATC 58.397 36.000 0.00 0.00 0.00 2.52
2129 4993 6.428159 AGTTGTAGAAATGTTTGAGCGAATCT 59.572 34.615 0.00 0.00 0.00 2.40
2130 4994 6.801539 TGTAGAAATGTTTGAGCGAATCTT 57.198 33.333 0.00 0.00 0.00 2.40
2131 4995 6.602179 TGTAGAAATGTTTGAGCGAATCTTG 58.398 36.000 0.00 0.00 0.00 3.02
2132 4996 5.051891 AGAAATGTTTGAGCGAATCTTGG 57.948 39.130 0.00 0.00 0.00 3.61
2133 4997 4.761739 AGAAATGTTTGAGCGAATCTTGGA 59.238 37.500 0.00 0.00 0.00 3.53
2134 4998 5.416952 AGAAATGTTTGAGCGAATCTTGGAT 59.583 36.000 0.00 0.00 0.00 3.41
2135 4999 4.627611 ATGTTTGAGCGAATCTTGGATG 57.372 40.909 0.00 0.00 0.00 3.51
2136 5000 3.673902 TGTTTGAGCGAATCTTGGATGA 58.326 40.909 0.00 0.00 0.00 2.92
2137 5001 4.071423 TGTTTGAGCGAATCTTGGATGAA 58.929 39.130 0.00 0.00 0.00 2.57
2138 5002 4.083324 TGTTTGAGCGAATCTTGGATGAAC 60.083 41.667 0.00 0.00 0.00 3.18
2139 5003 3.616956 TGAGCGAATCTTGGATGAACT 57.383 42.857 0.00 0.00 0.00 3.01
2140 5004 3.264947 TGAGCGAATCTTGGATGAACTG 58.735 45.455 0.00 0.00 0.00 3.16
2141 5005 2.611292 GAGCGAATCTTGGATGAACTGG 59.389 50.000 0.00 0.00 0.00 4.00
2142 5006 2.237143 AGCGAATCTTGGATGAACTGGA 59.763 45.455 0.00 0.00 0.00 3.86
2143 5007 2.352960 GCGAATCTTGGATGAACTGGAC 59.647 50.000 0.00 0.00 0.00 4.02
2144 5008 3.599343 CGAATCTTGGATGAACTGGACA 58.401 45.455 0.00 0.00 0.00 4.02
2145 5009 4.002982 CGAATCTTGGATGAACTGGACAA 58.997 43.478 0.00 0.00 0.00 3.18
2146 5010 4.093998 CGAATCTTGGATGAACTGGACAAG 59.906 45.833 0.00 0.00 39.76 3.16
2147 5011 2.783135 TCTTGGATGAACTGGACAAGC 58.217 47.619 0.00 0.00 38.64 4.01
2148 5012 1.815003 CTTGGATGAACTGGACAAGCC 59.185 52.381 0.00 0.00 33.12 4.35
2149 5013 0.770499 TGGATGAACTGGACAAGCCA 59.230 50.000 0.00 0.00 46.96 4.75
2157 5021 3.435846 TGGACAAGCCATTGAAGCA 57.564 47.368 0.00 0.00 43.33 3.91
2158 5022 1.702182 TGGACAAGCCATTGAAGCAA 58.298 45.000 0.00 0.00 43.33 3.91
2159 5023 2.037901 TGGACAAGCCATTGAAGCAAA 58.962 42.857 0.00 0.00 43.33 3.68
2160 5024 2.433604 TGGACAAGCCATTGAAGCAAAA 59.566 40.909 0.00 0.00 43.33 2.44
2161 5025 2.802247 GGACAAGCCATTGAAGCAAAAC 59.198 45.455 0.00 0.00 38.83 2.43
2162 5026 3.493176 GGACAAGCCATTGAAGCAAAACT 60.493 43.478 0.00 0.00 38.83 2.66
2163 5027 4.122046 GACAAGCCATTGAAGCAAAACTT 58.878 39.130 0.00 0.00 42.98 2.66
2164 5028 6.752971 GGACAAGCCATTGAAGCAAAACTTC 61.753 44.000 0.00 0.00 45.09 3.01
2175 5039 4.373156 AGCAAAACTTCCATGGACTACT 57.627 40.909 15.91 2.35 0.00 2.57
2176 5040 4.074970 AGCAAAACTTCCATGGACTACTG 58.925 43.478 15.91 9.60 0.00 2.74
2177 5041 3.821033 GCAAAACTTCCATGGACTACTGT 59.179 43.478 15.91 5.85 0.00 3.55
2178 5042 5.001232 GCAAAACTTCCATGGACTACTGTA 58.999 41.667 15.91 0.00 0.00 2.74
2179 5043 5.472137 GCAAAACTTCCATGGACTACTGTAA 59.528 40.000 15.91 0.00 0.00 2.41
2180 5044 6.348540 GCAAAACTTCCATGGACTACTGTAAG 60.349 42.308 15.91 9.17 42.29 2.34
2181 5045 5.422214 AACTTCCATGGACTACTGTAAGG 57.578 43.478 15.91 0.00 39.30 2.69
2182 5046 4.426704 ACTTCCATGGACTACTGTAAGGT 58.573 43.478 15.91 0.00 39.30 3.50
2183 5047 5.586877 ACTTCCATGGACTACTGTAAGGTA 58.413 41.667 15.91 0.00 39.30 3.08
2184 5048 5.421374 ACTTCCATGGACTACTGTAAGGTAC 59.579 44.000 15.91 0.00 39.30 3.34
2205 5069 8.146412 AGGTACTTATCCACGTATTTATGTTCC 58.854 37.037 0.00 0.00 27.25 3.62
2206 5070 8.146412 GGTACTTATCCACGTATTTATGTTCCT 58.854 37.037 0.00 0.00 0.00 3.36
2207 5071 9.538508 GTACTTATCCACGTATTTATGTTCCTT 57.461 33.333 0.00 0.00 0.00 3.36
2209 5073 9.457436 ACTTATCCACGTATTTATGTTCCTTTT 57.543 29.630 0.00 0.00 0.00 2.27
2232 5096 7.678207 TTTTAATTTTTAGTGGGGTTGTCCT 57.322 32.000 0.00 0.00 35.33 3.85
2233 5097 6.658188 TTAATTTTTAGTGGGGTTGTCCTG 57.342 37.500 0.00 0.00 35.33 3.86
2234 5098 3.955524 TTTTTAGTGGGGTTGTCCTGA 57.044 42.857 0.00 0.00 35.33 3.86
2235 5099 3.955524 TTTTAGTGGGGTTGTCCTGAA 57.044 42.857 0.00 0.00 35.33 3.02
2236 5100 3.955524 TTTAGTGGGGTTGTCCTGAAA 57.044 42.857 0.00 0.00 35.33 2.69
2237 5101 3.502123 TTAGTGGGGTTGTCCTGAAAG 57.498 47.619 0.00 0.00 35.33 2.62
2238 5102 1.518367 AGTGGGGTTGTCCTGAAAGA 58.482 50.000 0.00 0.00 34.07 2.52
2239 5103 1.850345 AGTGGGGTTGTCCTGAAAGAA 59.150 47.619 0.00 0.00 34.07 2.52
2240 5104 2.447047 AGTGGGGTTGTCCTGAAAGAAT 59.553 45.455 0.00 0.00 34.07 2.40
2241 5105 3.655777 AGTGGGGTTGTCCTGAAAGAATA 59.344 43.478 0.00 0.00 34.07 1.75
2242 5106 4.292306 AGTGGGGTTGTCCTGAAAGAATAT 59.708 41.667 0.00 0.00 34.07 1.28
2243 5107 5.016831 GTGGGGTTGTCCTGAAAGAATATT 58.983 41.667 0.00 0.00 34.07 1.28
2244 5108 5.480422 GTGGGGTTGTCCTGAAAGAATATTT 59.520 40.000 0.00 0.00 34.07 1.40
2245 5109 6.014584 GTGGGGTTGTCCTGAAAGAATATTTT 60.015 38.462 0.00 0.00 34.07 1.82
2246 5110 6.014669 TGGGGTTGTCCTGAAAGAATATTTTG 60.015 38.462 0.00 0.00 34.07 2.44
2247 5111 6.210584 GGGGTTGTCCTGAAAGAATATTTTGA 59.789 38.462 0.00 0.00 34.07 2.69
2248 5112 7.256154 GGGGTTGTCCTGAAAGAATATTTTGAA 60.256 37.037 0.00 0.00 34.07 2.69
2249 5113 8.147704 GGGTTGTCCTGAAAGAATATTTTGAAA 58.852 33.333 0.00 0.00 34.07 2.69
2250 5114 9.710900 GGTTGTCCTGAAAGAATATTTTGAAAT 57.289 29.630 0.00 0.00 34.07 2.17
2278 5142 9.174166 ACTTGACCTACACATTTATATTGTTCC 57.826 33.333 0.00 0.00 0.00 3.62
2279 5143 9.173021 CTTGACCTACACATTTATATTGTTCCA 57.827 33.333 0.00 0.00 0.00 3.53
2280 5144 8.731275 TGACCTACACATTTATATTGTTCCAG 57.269 34.615 0.00 0.00 0.00 3.86
2281 5145 8.325787 TGACCTACACATTTATATTGTTCCAGT 58.674 33.333 0.00 0.00 0.00 4.00
2282 5146 8.506168 ACCTACACATTTATATTGTTCCAGTG 57.494 34.615 0.00 0.00 0.00 3.66
2283 5147 8.325787 ACCTACACATTTATATTGTTCCAGTGA 58.674 33.333 0.00 0.00 0.00 3.41
2284 5148 9.173021 CCTACACATTTATATTGTTCCAGTGAA 57.827 33.333 0.00 0.00 0.00 3.18
2286 5150 8.862325 ACACATTTATATTGTTCCAGTGAAGA 57.138 30.769 0.00 0.00 0.00 2.87
2287 5151 9.466497 ACACATTTATATTGTTCCAGTGAAGAT 57.534 29.630 0.00 0.00 0.00 2.40
2293 5157 9.513906 TTATATTGTTCCAGTGAAGATTCAACA 57.486 29.630 0.00 0.00 39.21 3.33
2294 5158 5.499139 TTGTTCCAGTGAAGATTCAACAC 57.501 39.130 0.00 0.00 39.21 3.32
2295 5159 4.522114 TGTTCCAGTGAAGATTCAACACA 58.478 39.130 13.02 0.00 39.21 3.72
2296 5160 5.132502 TGTTCCAGTGAAGATTCAACACAT 58.867 37.500 13.02 0.56 39.21 3.21
2297 5161 6.295249 TGTTCCAGTGAAGATTCAACACATA 58.705 36.000 13.02 0.07 39.21 2.29
2298 5162 6.770303 TGTTCCAGTGAAGATTCAACACATAA 59.230 34.615 13.02 4.57 39.21 1.90
2299 5163 7.448161 TGTTCCAGTGAAGATTCAACACATAAT 59.552 33.333 13.02 0.00 39.21 1.28
2300 5164 8.946085 GTTCCAGTGAAGATTCAACACATAATA 58.054 33.333 13.02 0.00 39.21 0.98
2301 5165 9.685276 TTCCAGTGAAGATTCAACACATAATAT 57.315 29.630 13.02 0.00 39.21 1.28
2302 5166 9.112725 TCCAGTGAAGATTCAACACATAATATG 57.887 33.333 13.02 0.00 39.21 1.78
2303 5167 8.896744 CCAGTGAAGATTCAACACATAATATGT 58.103 33.333 0.00 0.00 40.85 2.29
2305 5169 8.400947 AGTGAAGATTCAACACATAATATGTGC 58.599 33.333 27.67 13.76 46.90 4.57
2306 5170 7.374228 GTGAAGATTCAACACATAATATGTGCG 59.626 37.037 27.67 20.41 46.90 5.34
2307 5171 7.065683 TGAAGATTCAACACATAATATGTGCGT 59.934 33.333 27.67 16.27 46.90 5.24
2316 5180 5.806286 ACATAATATGTGCGTACAAAGTGC 58.194 37.500 11.22 0.00 43.01 4.40
2317 5181 5.352846 ACATAATATGTGCGTACAAAGTGCA 59.647 36.000 11.22 0.00 43.01 4.57
2318 5182 4.757799 AATATGTGCGTACAAAGTGCAA 57.242 36.364 11.22 0.00 40.84 4.08
2319 5183 2.686558 ATGTGCGTACAAAGTGCAAG 57.313 45.000 11.22 0.00 40.84 4.01
2320 5184 1.374560 TGTGCGTACAAAGTGCAAGT 58.625 45.000 3.02 0.00 40.83 3.16
2321 5185 1.740585 TGTGCGTACAAAGTGCAAGTT 59.259 42.857 3.02 0.00 40.83 2.66
2322 5186 2.108700 GTGCGTACAAAGTGCAAGTTG 58.891 47.619 8.67 8.67 40.83 3.16
2323 5187 1.740585 TGCGTACAAAGTGCAAGTTGT 59.259 42.857 17.57 17.57 40.88 3.32
2324 5188 2.937149 TGCGTACAAAGTGCAAGTTGTA 59.063 40.909 15.90 15.90 38.80 2.41
2330 5194 4.932146 ACAAAGTGCAAGTTGTACCATTC 58.068 39.130 18.99 0.00 36.22 2.67
2331 5195 4.202111 ACAAAGTGCAAGTTGTACCATTCC 60.202 41.667 18.99 0.00 36.22 3.01
2332 5196 3.508845 AGTGCAAGTTGTACCATTCCT 57.491 42.857 18.99 0.00 33.24 3.36
2333 5197 3.149196 AGTGCAAGTTGTACCATTCCTG 58.851 45.455 18.99 0.00 33.24 3.86
2334 5198 3.146066 GTGCAAGTTGTACCATTCCTGA 58.854 45.455 12.62 0.00 0.00 3.86
2335 5199 3.568007 GTGCAAGTTGTACCATTCCTGAA 59.432 43.478 12.62 0.00 0.00 3.02
2336 5200 3.820467 TGCAAGTTGTACCATTCCTGAAG 59.180 43.478 4.48 0.00 0.00 3.02
2337 5201 4.072131 GCAAGTTGTACCATTCCTGAAGA 58.928 43.478 4.48 0.00 0.00 2.87
2338 5202 4.083271 GCAAGTTGTACCATTCCTGAAGAC 60.083 45.833 4.48 0.00 0.00 3.01
2339 5203 4.974645 AGTTGTACCATTCCTGAAGACA 57.025 40.909 0.00 0.00 0.00 3.41
2340 5204 5.505181 AGTTGTACCATTCCTGAAGACAT 57.495 39.130 0.00 0.00 0.00 3.06
2341 5205 6.620877 AGTTGTACCATTCCTGAAGACATA 57.379 37.500 0.00 0.00 0.00 2.29
2342 5206 7.016153 AGTTGTACCATTCCTGAAGACATAA 57.984 36.000 0.00 0.00 0.00 1.90
2343 5207 6.879458 AGTTGTACCATTCCTGAAGACATAAC 59.121 38.462 0.00 0.00 0.00 1.89
2344 5208 5.741011 TGTACCATTCCTGAAGACATAACC 58.259 41.667 0.00 0.00 0.00 2.85
2345 5209 4.236527 ACCATTCCTGAAGACATAACCC 57.763 45.455 0.00 0.00 0.00 4.11
2346 5210 3.852578 ACCATTCCTGAAGACATAACCCT 59.147 43.478 0.00 0.00 0.00 4.34
2347 5211 4.292306 ACCATTCCTGAAGACATAACCCTT 59.708 41.667 0.00 0.00 0.00 3.95
2348 5212 4.641989 CCATTCCTGAAGACATAACCCTTG 59.358 45.833 0.00 0.00 0.00 3.61
2349 5213 3.350219 TCCTGAAGACATAACCCTTGC 57.650 47.619 0.00 0.00 0.00 4.01
2350 5214 2.642311 TCCTGAAGACATAACCCTTGCA 59.358 45.455 0.00 0.00 0.00 4.08
2351 5215 3.073798 TCCTGAAGACATAACCCTTGCAA 59.926 43.478 0.00 0.00 0.00 4.08
2352 5216 3.826157 CCTGAAGACATAACCCTTGCAAA 59.174 43.478 0.00 0.00 0.00 3.68
2353 5217 4.463891 CCTGAAGACATAACCCTTGCAAAT 59.536 41.667 0.00 0.00 0.00 2.32
2354 5218 5.047092 CCTGAAGACATAACCCTTGCAAATT 60.047 40.000 0.00 0.00 0.00 1.82
2355 5219 6.024552 TGAAGACATAACCCTTGCAAATTC 57.975 37.500 0.00 0.00 0.00 2.17
2356 5220 5.538053 TGAAGACATAACCCTTGCAAATTCA 59.462 36.000 0.00 0.00 0.00 2.57
2357 5221 6.041409 TGAAGACATAACCCTTGCAAATTCAA 59.959 34.615 0.00 0.00 0.00 2.69
2358 5222 6.418057 AGACATAACCCTTGCAAATTCAAA 57.582 33.333 0.00 0.00 0.00 2.69
2359 5223 6.825610 AGACATAACCCTTGCAAATTCAAAA 58.174 32.000 0.00 0.00 0.00 2.44
2360 5224 7.278875 AGACATAACCCTTGCAAATTCAAAAA 58.721 30.769 0.00 0.00 0.00 1.94
2361 5225 7.938490 AGACATAACCCTTGCAAATTCAAAAAT 59.062 29.630 0.00 0.00 0.00 1.82
2362 5226 8.098220 ACATAACCCTTGCAAATTCAAAAATC 57.902 30.769 0.00 0.00 0.00 2.17
2363 5227 7.718753 ACATAACCCTTGCAAATTCAAAAATCA 59.281 29.630 0.00 0.00 0.00 2.57
2364 5228 8.732531 CATAACCCTTGCAAATTCAAAAATCAT 58.267 29.630 0.00 0.00 0.00 2.45
2365 5229 6.806388 ACCCTTGCAAATTCAAAAATCATC 57.194 33.333 0.00 0.00 0.00 2.92
2366 5230 5.706833 ACCCTTGCAAATTCAAAAATCATCC 59.293 36.000 0.00 0.00 0.00 3.51
2367 5231 5.706369 CCCTTGCAAATTCAAAAATCATCCA 59.294 36.000 0.00 0.00 0.00 3.41
2368 5232 6.207025 CCCTTGCAAATTCAAAAATCATCCAA 59.793 34.615 0.00 0.00 0.00 3.53
2369 5233 7.094118 CCCTTGCAAATTCAAAAATCATCCAAT 60.094 33.333 0.00 0.00 0.00 3.16
2370 5234 7.753132 CCTTGCAAATTCAAAAATCATCCAATG 59.247 33.333 0.00 0.00 0.00 2.82
2371 5235 7.147143 TGCAAATTCAAAAATCATCCAATGG 57.853 32.000 0.00 0.00 0.00 3.16
2372 5236 6.715718 TGCAAATTCAAAAATCATCCAATGGT 59.284 30.769 0.00 0.00 0.00 3.55
2373 5237 7.230913 TGCAAATTCAAAAATCATCCAATGGTT 59.769 29.630 0.00 0.00 34.43 3.67
2374 5238 8.728833 GCAAATTCAAAAATCATCCAATGGTTA 58.271 29.630 0.00 0.00 31.01 2.85
2376 5240 8.791327 AATTCAAAAATCATCCAATGGTTACC 57.209 30.769 0.00 0.00 31.01 2.85
2377 5241 6.924913 TCAAAAATCATCCAATGGTTACCA 57.075 33.333 6.53 6.53 38.19 3.25
2378 5242 7.308450 TCAAAAATCATCCAATGGTTACCAA 57.692 32.000 8.63 0.00 36.95 3.67
2379 5243 7.158021 TCAAAAATCATCCAATGGTTACCAAC 58.842 34.615 8.63 0.00 36.95 3.77
2380 5244 6.933514 AAAATCATCCAATGGTTACCAACT 57.066 33.333 8.63 0.00 36.95 3.16
2381 5245 6.530019 AAATCATCCAATGGTTACCAACTC 57.470 37.500 8.63 0.00 36.95 3.01
2382 5246 4.927267 TCATCCAATGGTTACCAACTCT 57.073 40.909 8.63 0.00 36.95 3.24
2383 5247 5.255397 TCATCCAATGGTTACCAACTCTT 57.745 39.130 8.63 0.00 36.95 2.85
2384 5248 5.640147 TCATCCAATGGTTACCAACTCTTT 58.360 37.500 8.63 0.00 36.95 2.52
2385 5249 5.476599 TCATCCAATGGTTACCAACTCTTTG 59.523 40.000 8.63 7.93 36.95 2.77
2386 5250 5.055265 TCCAATGGTTACCAACTCTTTGA 57.945 39.130 8.63 0.00 36.95 2.69
2387 5251 5.070001 TCCAATGGTTACCAACTCTTTGAG 58.930 41.667 8.63 3.00 36.95 3.02
2388 5252 5.070001 CCAATGGTTACCAACTCTTTGAGA 58.930 41.667 8.63 0.00 36.95 3.27
2389 5253 5.534654 CCAATGGTTACCAACTCTTTGAGAA 59.465 40.000 8.63 0.00 36.95 2.87
2390 5254 6.040391 CCAATGGTTACCAACTCTTTGAGAAA 59.960 38.462 8.63 0.00 36.95 2.52
2391 5255 6.884280 ATGGTTACCAACTCTTTGAGAAAG 57.116 37.500 8.63 0.00 36.95 2.62
2392 5256 4.578928 TGGTTACCAACTCTTTGAGAAAGC 59.421 41.667 0.00 0.00 38.39 3.51
2393 5257 4.578928 GGTTACCAACTCTTTGAGAAAGCA 59.421 41.667 0.00 0.00 38.39 3.91
2394 5258 5.278022 GGTTACCAACTCTTTGAGAAAGCAG 60.278 44.000 0.00 0.00 38.39 4.24
2395 5259 2.620585 ACCAACTCTTTGAGAAAGCAGC 59.379 45.455 1.25 0.00 38.39 5.25
2396 5260 2.620115 CCAACTCTTTGAGAAAGCAGCA 59.380 45.455 0.00 0.00 38.39 4.41
2397 5261 3.255149 CCAACTCTTTGAGAAAGCAGCAT 59.745 43.478 0.00 0.00 38.39 3.79
2398 5262 4.227538 CAACTCTTTGAGAAAGCAGCATG 58.772 43.478 0.00 0.00 38.39 4.06
2413 5277 4.690184 CAGCATGCACTAGATTCAACAA 57.310 40.909 21.98 0.00 0.00 2.83
2414 5278 5.244785 CAGCATGCACTAGATTCAACAAT 57.755 39.130 21.98 0.00 0.00 2.71
2415 5279 5.647589 CAGCATGCACTAGATTCAACAATT 58.352 37.500 21.98 0.00 0.00 2.32
2416 5280 6.788243 CAGCATGCACTAGATTCAACAATTA 58.212 36.000 21.98 0.00 0.00 1.40
2417 5281 7.252708 CAGCATGCACTAGATTCAACAATTAA 58.747 34.615 21.98 0.00 0.00 1.40
2418 5282 7.756272 CAGCATGCACTAGATTCAACAATTAAA 59.244 33.333 21.98 0.00 0.00 1.52
2419 5283 7.756722 AGCATGCACTAGATTCAACAATTAAAC 59.243 33.333 21.98 0.00 0.00 2.01
2420 5284 7.541783 GCATGCACTAGATTCAACAATTAAACA 59.458 33.333 14.21 0.00 0.00 2.83
2421 5285 8.853345 CATGCACTAGATTCAACAATTAAACAC 58.147 33.333 0.00 0.00 0.00 3.32
2422 5286 7.935520 TGCACTAGATTCAACAATTAAACACA 58.064 30.769 0.00 0.00 0.00 3.72
2423 5287 8.409371 TGCACTAGATTCAACAATTAAACACAA 58.591 29.630 0.00 0.00 0.00 3.33
2424 5288 8.905702 GCACTAGATTCAACAATTAAACACAAG 58.094 33.333 0.00 0.00 0.00 3.16
2425 5289 8.905702 CACTAGATTCAACAATTAAACACAAGC 58.094 33.333 0.00 0.00 0.00 4.01
2426 5290 8.629158 ACTAGATTCAACAATTAAACACAAGCA 58.371 29.630 0.00 0.00 0.00 3.91
2427 5291 9.462174 CTAGATTCAACAATTAAACACAAGCAA 57.538 29.630 0.00 0.00 0.00 3.91
2428 5292 8.891671 AGATTCAACAATTAAACACAAGCAAT 57.108 26.923 0.00 0.00 0.00 3.56
2429 5293 9.979578 AGATTCAACAATTAAACACAAGCAATA 57.020 25.926 0.00 0.00 0.00 1.90
2433 5297 9.593134 TCAACAATTAAACACAAGCAATAAAGT 57.407 25.926 0.00 0.00 0.00 2.66
2436 5300 9.593134 ACAATTAAACACAAGCAATAAAGTTCA 57.407 25.926 0.00 0.00 0.00 3.18
2440 5304 7.481275 AAACACAAGCAATAAAGTTCAATGG 57.519 32.000 0.00 0.00 0.00 3.16
2441 5305 6.160576 ACACAAGCAATAAAGTTCAATGGT 57.839 33.333 0.00 0.00 0.00 3.55
2442 5306 7.283625 ACACAAGCAATAAAGTTCAATGGTA 57.716 32.000 0.00 0.00 0.00 3.25
2443 5307 7.895759 ACACAAGCAATAAAGTTCAATGGTAT 58.104 30.769 0.00 0.00 0.00 2.73
2444 5308 8.028938 ACACAAGCAATAAAGTTCAATGGTATC 58.971 33.333 0.00 0.00 0.00 2.24
2445 5309 8.028354 CACAAGCAATAAAGTTCAATGGTATCA 58.972 33.333 0.00 0.00 0.00 2.15
2446 5310 8.752187 ACAAGCAATAAAGTTCAATGGTATCAT 58.248 29.630 0.00 0.00 34.56 2.45
2447 5311 9.590451 CAAGCAATAAAGTTCAATGGTATCATT 57.410 29.630 0.00 0.00 43.79 2.57
2511 5375 5.912955 GTCTACCTGAAACAAACAAAATCGG 59.087 40.000 0.00 0.00 0.00 4.18
2513 5377 5.529581 ACCTGAAACAAACAAAATCGGAT 57.470 34.783 0.00 0.00 0.00 4.18
2517 5381 8.147704 ACCTGAAACAAACAAAATCGGATAAAT 58.852 29.630 0.00 0.00 0.00 1.40
2518 5382 8.434661 CCTGAAACAAACAAAATCGGATAAATG 58.565 33.333 0.00 0.00 0.00 2.32
2542 5406 3.960998 CGTCGTGTCTATGCGCGC 61.961 66.667 27.26 27.26 41.52 6.86
2550 5414 3.634072 CTATGCGCGCACAGCCTC 61.634 66.667 39.05 1.69 44.76 4.70
2593 5457 2.115695 TGCCATGGTGCAGAGCAA 59.884 55.556 14.67 0.00 41.47 3.91
2601 5465 1.339055 TGGTGCAGAGCAACCATCTAC 60.339 52.381 4.40 0.00 46.96 2.59
2602 5466 1.373570 GTGCAGAGCAACCATCTACC 58.626 55.000 0.00 0.00 41.47 3.18
2622 5486 1.212441 CGTGTACTACTCTCCCTCCCT 59.788 57.143 0.00 0.00 0.00 4.20
2657 5521 2.774799 GGTTAGCGCCATTGCCCAG 61.775 63.158 2.29 0.00 34.65 4.45
2685 5549 1.000060 CACTGCCAAAGTCCCACATTG 60.000 52.381 0.00 0.00 36.83 2.82
2686 5550 0.604578 CTGCCAAAGTCCCACATTGG 59.395 55.000 6.33 6.33 46.51 3.16
2688 5552 3.056213 CCAAAGTCCCACATTGGCT 57.944 52.632 0.00 0.00 39.64 4.75
2733 5597 1.006832 CGGAGTTTGTAGGCGATTGG 58.993 55.000 0.00 0.00 0.00 3.16
2787 5651 3.557686 GCTTGGTGATTTCCTGGCATTTT 60.558 43.478 0.00 0.00 0.00 1.82
2788 5652 4.644498 CTTGGTGATTTCCTGGCATTTTT 58.356 39.130 0.00 0.00 0.00 1.94
2816 5680 1.669760 CTTCAGGCGCCCGTTACAA 60.670 57.895 26.15 1.49 0.00 2.41
2827 5691 2.735762 GCCCGTTACAACAAGTTTTGCA 60.736 45.455 0.00 0.00 0.00 4.08
2831 5695 4.386049 CCGTTACAACAAGTTTTGCAAACA 59.614 37.500 12.39 0.48 31.03 2.83
2836 5700 0.929615 CAAGTTTTGCAAACAGGCGG 59.070 50.000 12.39 0.00 36.28 6.13
2848 5712 1.680651 CAGGCGGACACTCTCCTCT 60.681 63.158 0.00 0.00 36.80 3.69
2852 5716 2.183046 GGACACTCTCCTCTGCGC 59.817 66.667 0.00 0.00 35.89 6.09
2939 5803 0.108281 GGTCTCAAACCGGCTACCTC 60.108 60.000 0.00 0.00 38.58 3.85
2987 5851 0.182061 CCCACCATCCTCACCTGATG 59.818 60.000 0.00 0.00 39.44 3.07
2988 5852 0.914644 CCACCATCCTCACCTGATGT 59.085 55.000 0.00 0.00 38.32 3.06
3002 5866 2.352651 CCTGATGTGCTCAATTACACCG 59.647 50.000 0.00 0.00 35.90 4.94
3006 5870 4.277174 TGATGTGCTCAATTACACCGTTTT 59.723 37.500 0.00 0.00 35.90 2.43
3011 5875 6.205853 TGTGCTCAATTACACCGTTTTCTATT 59.794 34.615 3.73 0.00 35.90 1.73
3012 5876 6.741358 GTGCTCAATTACACCGTTTTCTATTC 59.259 38.462 0.00 0.00 0.00 1.75
3024 5888 9.047871 CACCGTTTTCTATTCGTATTCTTTTTC 57.952 33.333 0.00 0.00 0.00 2.29
3025 5889 8.776470 ACCGTTTTCTATTCGTATTCTTTTTCA 58.224 29.630 0.00 0.00 0.00 2.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
185 186 6.348498 CATCAAAAACTCCTTCCAAAAACCT 58.652 36.000 0.00 0.00 0.00 3.50
373 381 1.067635 CATCGGTTTGGAAAAGCTGGG 60.068 52.381 0.00 0.00 0.00 4.45
549 564 1.000607 TGTCGTCTCTGTAACTGTGCC 60.001 52.381 0.00 0.00 0.00 5.01
593 608 0.685097 ATTCACACCGGTGCTACTGT 59.315 50.000 34.26 11.24 44.87 3.55
617 632 2.556287 CTGCCGTTTCCGCTTGAC 59.444 61.111 0.00 0.00 0.00 3.18
631 646 1.605058 TACAGTTCCGAGGAGGCTGC 61.605 60.000 18.79 0.00 40.77 5.25
632 647 0.895530 TTACAGTTCCGAGGAGGCTG 59.104 55.000 17.87 17.87 40.77 4.85
633 648 1.275573 GTTTACAGTTCCGAGGAGGCT 59.724 52.381 0.00 0.00 40.77 4.58
648 663 7.149462 GGTTAATTACGATTAATGCGCGTTTAC 60.149 37.037 21.69 11.02 39.29 2.01
851 892 0.542333 TCGGAGAGGATGAGACGAGT 59.458 55.000 0.00 0.00 0.00 4.18
891 964 1.596260 CTGCATGCACTTACTGATCCG 59.404 52.381 18.46 0.00 0.00 4.18
912 985 0.597637 CGGATGGAGTACGGTGATGC 60.598 60.000 0.00 0.00 0.00 3.91
931 1015 6.585702 CGAACTGATGAGAATCCTGTGATATC 59.414 42.308 0.00 0.00 0.00 1.63
940 1026 7.148641 ACATACATACGAACTGATGAGAATCC 58.851 38.462 0.00 0.00 0.00 3.01
951 3300 4.740268 TGCGAGAAACATACATACGAACT 58.260 39.130 0.00 0.00 0.00 3.01
956 3305 4.363999 AGAGCTGCGAGAAACATACATAC 58.636 43.478 0.00 0.00 0.00 2.39
960 3315 4.035278 AGTAGAGCTGCGAGAAACATAC 57.965 45.455 0.00 0.00 0.00 2.39
1086 3445 3.120321 TCAACAACGAGCAAGTGGTAT 57.880 42.857 0.00 0.00 0.00 2.73
1253 3627 2.160205 TCCTGACAGATTCGTCGAGTT 58.840 47.619 3.32 0.00 38.84 3.01
1254 3628 1.822506 TCCTGACAGATTCGTCGAGT 58.177 50.000 3.32 0.00 38.84 4.18
1265 3639 2.408050 CCTGAACTTCGTTCCTGACAG 58.592 52.381 4.48 0.00 41.35 3.51
1378 3758 3.191162 GCTGGCTGTTCATCAACATTACA 59.809 43.478 0.00 0.00 41.82 2.41
1382 3762 1.913778 TGCTGGCTGTTCATCAACAT 58.086 45.000 0.00 0.00 41.82 2.71
1385 3765 2.275134 TCTTGCTGGCTGTTCATCAA 57.725 45.000 0.00 0.00 0.00 2.57
1386 3766 2.502142 ATCTTGCTGGCTGTTCATCA 57.498 45.000 0.00 0.00 0.00 3.07
1392 3772 1.610522 GTCACAAATCTTGCTGGCTGT 59.389 47.619 0.00 0.00 0.00 4.40
1477 3866 3.056821 TCATCTTCGTCGTCCTTGACAAT 60.057 43.478 0.00 0.00 38.84 2.71
1494 3889 8.176105 TCCTCTTCATAATAGTCCTCATCATCT 58.824 37.037 0.00 0.00 0.00 2.90
1500 3895 6.281190 TCCTCCTCTTCATAATAGTCCTCA 57.719 41.667 0.00 0.00 0.00 3.86
1525 3920 3.250323 CGGACGAGCACGCTCATG 61.250 66.667 18.54 6.17 42.86 3.07
1527 3922 3.891586 GAACGGACGAGCACGCTCA 62.892 63.158 18.54 0.00 42.86 4.26
1557 3973 3.423154 CTTGGCAAGTCGGACGGC 61.423 66.667 19.07 16.23 0.00 5.68
1633 4049 0.752743 TGTGCAGCCAACTTCTTGCT 60.753 50.000 0.00 0.00 0.00 3.91
1691 4107 0.963962 CATGGTGCCAAAGAGCTGTT 59.036 50.000 0.00 0.00 0.00 3.16
1732 4157 2.159099 TGCCATCTATCTTCACGACACC 60.159 50.000 0.00 0.00 0.00 4.16
1776 4201 7.281774 CCATCAGTGTAGATGAAAGTAAGCAAT 59.718 37.037 5.57 0.00 46.51 3.56
1878 4366 9.362151 ACCAACTTTAACTTTTGGAGATCATAA 57.638 29.630 13.46 0.00 42.17 1.90
1896 4384 5.104259 ACTTCTCTTCACAGACCAACTTT 57.896 39.130 0.00 0.00 0.00 2.66
1960 4824 1.739562 GTCTCCACTCAGCGGCAAG 60.740 63.158 1.45 1.41 0.00 4.01
1962 4826 4.056125 CGTCTCCACTCAGCGGCA 62.056 66.667 1.45 0.00 0.00 5.69
1964 4828 3.753434 AGCGTCTCCACTCAGCGG 61.753 66.667 0.00 0.00 0.00 5.52
1980 4844 2.032528 TCCTTCAACCAGCGGCAG 59.967 61.111 1.45 0.00 0.00 4.85
2044 4908 3.813596 CAGGGCATCCGCTGTAAC 58.186 61.111 0.00 0.00 44.45 2.50
2057 4921 2.038295 GTCCTGATTATCTGCTCCAGGG 59.962 54.545 0.00 0.00 43.34 4.45
2081 4945 7.639378 ACTTTGGTTATGTTAGGGTGATACAT 58.361 34.615 0.00 0.00 36.53 2.29
2082 4946 7.023171 ACTTTGGTTATGTTAGGGTGATACA 57.977 36.000 0.00 0.00 0.00 2.29
2083 4947 7.392393 ACAACTTTGGTTATGTTAGGGTGATAC 59.608 37.037 0.00 0.00 33.88 2.24
2084 4948 7.463431 ACAACTTTGGTTATGTTAGGGTGATA 58.537 34.615 0.00 0.00 33.88 2.15
2085 4949 6.311735 ACAACTTTGGTTATGTTAGGGTGAT 58.688 36.000 0.00 0.00 33.88 3.06
2086 4950 5.697067 ACAACTTTGGTTATGTTAGGGTGA 58.303 37.500 0.00 0.00 33.88 4.02
2087 4951 6.938030 TCTACAACTTTGGTTATGTTAGGGTG 59.062 38.462 0.00 0.00 33.88 4.61
2088 4952 7.081857 TCTACAACTTTGGTTATGTTAGGGT 57.918 36.000 0.00 0.00 33.88 4.34
2089 4953 7.989416 TTCTACAACTTTGGTTATGTTAGGG 57.011 36.000 0.00 0.00 33.88 3.53
2090 4954 9.840427 CATTTCTACAACTTTGGTTATGTTAGG 57.160 33.333 0.00 0.00 33.88 2.69
2094 4958 9.528018 CAAACATTTCTACAACTTTGGTTATGT 57.472 29.630 0.00 0.00 32.12 2.29
2095 4959 9.743057 TCAAACATTTCTACAACTTTGGTTATG 57.257 29.630 0.00 0.00 33.88 1.90
2096 4960 9.965824 CTCAAACATTTCTACAACTTTGGTTAT 57.034 29.630 0.00 0.00 33.88 1.89
2097 4961 7.918562 GCTCAAACATTTCTACAACTTTGGTTA 59.081 33.333 0.00 0.00 33.88 2.85
2098 4962 6.756542 GCTCAAACATTTCTACAACTTTGGTT 59.243 34.615 0.00 0.00 35.86 3.67
2099 4963 6.273071 GCTCAAACATTTCTACAACTTTGGT 58.727 36.000 0.00 0.00 0.00 3.67
2100 4964 5.399301 CGCTCAAACATTTCTACAACTTTGG 59.601 40.000 0.00 0.00 0.00 3.28
2101 4965 6.198687 TCGCTCAAACATTTCTACAACTTTG 58.801 36.000 0.00 0.00 0.00 2.77
2102 4966 6.371809 TCGCTCAAACATTTCTACAACTTT 57.628 33.333 0.00 0.00 0.00 2.66
2103 4967 6.371809 TTCGCTCAAACATTTCTACAACTT 57.628 33.333 0.00 0.00 0.00 2.66
2104 4968 6.428159 AGATTCGCTCAAACATTTCTACAACT 59.572 34.615 0.00 0.00 0.00 3.16
2105 4969 6.603095 AGATTCGCTCAAACATTTCTACAAC 58.397 36.000 0.00 0.00 0.00 3.32
2106 4970 6.801539 AGATTCGCTCAAACATTTCTACAA 57.198 33.333 0.00 0.00 0.00 2.41
2107 4971 6.348458 CCAAGATTCGCTCAAACATTTCTACA 60.348 38.462 0.00 0.00 0.00 2.74
2108 4972 6.024049 CCAAGATTCGCTCAAACATTTCTAC 58.976 40.000 0.00 0.00 0.00 2.59
2109 4973 5.937540 TCCAAGATTCGCTCAAACATTTCTA 59.062 36.000 0.00 0.00 0.00 2.10
2110 4974 4.761739 TCCAAGATTCGCTCAAACATTTCT 59.238 37.500 0.00 0.00 0.00 2.52
2111 4975 5.046910 TCCAAGATTCGCTCAAACATTTC 57.953 39.130 0.00 0.00 0.00 2.17
2112 4976 5.183713 TCATCCAAGATTCGCTCAAACATTT 59.816 36.000 0.00 0.00 0.00 2.32
2113 4977 4.701651 TCATCCAAGATTCGCTCAAACATT 59.298 37.500 0.00 0.00 0.00 2.71
2114 4978 4.264253 TCATCCAAGATTCGCTCAAACAT 58.736 39.130 0.00 0.00 0.00 2.71
2115 4979 3.673902 TCATCCAAGATTCGCTCAAACA 58.326 40.909 0.00 0.00 0.00 2.83
2116 4980 4.154918 AGTTCATCCAAGATTCGCTCAAAC 59.845 41.667 0.00 0.00 0.00 2.93
2117 4981 4.154737 CAGTTCATCCAAGATTCGCTCAAA 59.845 41.667 0.00 0.00 0.00 2.69
2118 4982 3.686241 CAGTTCATCCAAGATTCGCTCAA 59.314 43.478 0.00 0.00 0.00 3.02
2119 4983 3.264947 CAGTTCATCCAAGATTCGCTCA 58.735 45.455 0.00 0.00 0.00 4.26
2120 4984 2.611292 CCAGTTCATCCAAGATTCGCTC 59.389 50.000 0.00 0.00 0.00 5.03
2121 4985 2.237143 TCCAGTTCATCCAAGATTCGCT 59.763 45.455 0.00 0.00 0.00 4.93
2122 4986 2.352960 GTCCAGTTCATCCAAGATTCGC 59.647 50.000 0.00 0.00 0.00 4.70
2123 4987 3.599343 TGTCCAGTTCATCCAAGATTCG 58.401 45.455 0.00 0.00 0.00 3.34
2124 4988 4.142513 GCTTGTCCAGTTCATCCAAGATTC 60.143 45.833 0.00 0.00 35.64 2.52
2125 4989 3.760684 GCTTGTCCAGTTCATCCAAGATT 59.239 43.478 0.00 0.00 35.64 2.40
2126 4990 3.350833 GCTTGTCCAGTTCATCCAAGAT 58.649 45.455 0.00 0.00 35.64 2.40
2127 4991 2.553028 GGCTTGTCCAGTTCATCCAAGA 60.553 50.000 0.00 0.00 35.64 3.02
2128 4992 1.815003 GGCTTGTCCAGTTCATCCAAG 59.185 52.381 0.00 0.00 36.47 3.61
2129 4993 1.144708 TGGCTTGTCCAGTTCATCCAA 59.855 47.619 0.00 0.00 40.72 3.53
2130 4994 0.770499 TGGCTTGTCCAGTTCATCCA 59.230 50.000 0.00 0.00 40.72 3.41
2131 4995 3.650647 TGGCTTGTCCAGTTCATCC 57.349 52.632 0.00 0.00 40.72 3.51
2139 5003 7.370024 AAGTTTTGCTTCAATGGCTTGTCCA 62.370 40.000 0.00 0.00 40.61 4.02
2140 5004 2.802247 GTTTTGCTTCAATGGCTTGTCC 59.198 45.455 0.00 0.00 33.87 4.02
2141 5005 3.721035 AGTTTTGCTTCAATGGCTTGTC 58.279 40.909 0.00 0.00 33.87 3.18
2142 5006 3.825143 AGTTTTGCTTCAATGGCTTGT 57.175 38.095 0.00 0.00 33.87 3.16
2153 5017 4.520492 CAGTAGTCCATGGAAGTTTTGCTT 59.480 41.667 18.20 0.00 40.76 3.91
2154 5018 4.074970 CAGTAGTCCATGGAAGTTTTGCT 58.925 43.478 18.20 10.04 0.00 3.91
2155 5019 3.821033 ACAGTAGTCCATGGAAGTTTTGC 59.179 43.478 18.20 1.52 0.00 3.68
2156 5020 6.149474 CCTTACAGTAGTCCATGGAAGTTTTG 59.851 42.308 18.20 13.63 35.88 2.44
2157 5021 6.183361 ACCTTACAGTAGTCCATGGAAGTTTT 60.183 38.462 18.20 2.04 35.88 2.43
2158 5022 5.309806 ACCTTACAGTAGTCCATGGAAGTTT 59.690 40.000 18.20 5.29 35.88 2.66
2159 5023 4.844655 ACCTTACAGTAGTCCATGGAAGTT 59.155 41.667 18.20 7.97 35.88 2.66
2160 5024 4.426704 ACCTTACAGTAGTCCATGGAAGT 58.573 43.478 18.20 9.70 35.88 3.01
2161 5025 5.657302 AGTACCTTACAGTAGTCCATGGAAG 59.343 44.000 18.20 7.45 37.15 3.46
2162 5026 5.586877 AGTACCTTACAGTAGTCCATGGAA 58.413 41.667 18.20 0.00 0.00 3.53
2163 5027 5.202746 AGTACCTTACAGTAGTCCATGGA 57.797 43.478 11.44 11.44 0.00 3.41
2164 5028 5.934402 AAGTACCTTACAGTAGTCCATGG 57.066 43.478 4.97 4.97 0.00 3.66
2165 5029 7.287005 TGGATAAGTACCTTACAGTAGTCCATG 59.713 40.741 0.00 0.00 0.00 3.66
2166 5030 7.287235 GTGGATAAGTACCTTACAGTAGTCCAT 59.713 40.741 0.00 0.00 0.00 3.41
2167 5031 6.604795 GTGGATAAGTACCTTACAGTAGTCCA 59.395 42.308 0.00 0.00 0.00 4.02
2168 5032 6.238593 CGTGGATAAGTACCTTACAGTAGTCC 60.239 46.154 0.00 0.00 0.00 3.85
2169 5033 6.317391 ACGTGGATAAGTACCTTACAGTAGTC 59.683 42.308 0.00 0.00 0.00 2.59
2170 5034 6.183347 ACGTGGATAAGTACCTTACAGTAGT 58.817 40.000 0.00 0.00 0.00 2.73
2171 5035 6.690194 ACGTGGATAAGTACCTTACAGTAG 57.310 41.667 0.00 0.00 0.00 2.57
2172 5036 8.752005 AATACGTGGATAAGTACCTTACAGTA 57.248 34.615 0.00 0.00 0.00 2.74
2173 5037 7.651027 AATACGTGGATAAGTACCTTACAGT 57.349 36.000 0.00 0.00 0.00 3.55
2175 5039 9.970395 CATAAATACGTGGATAAGTACCTTACA 57.030 33.333 0.00 0.00 0.00 2.41
2176 5040 9.971922 ACATAAATACGTGGATAAGTACCTTAC 57.028 33.333 0.00 0.00 0.00 2.34
2178 5042 9.538508 GAACATAAATACGTGGATAAGTACCTT 57.461 33.333 0.00 0.00 0.00 3.50
2179 5043 8.146412 GGAACATAAATACGTGGATAAGTACCT 58.854 37.037 0.00 0.00 0.00 3.08
2180 5044 8.146412 AGGAACATAAATACGTGGATAAGTACC 58.854 37.037 0.00 0.00 0.00 3.34
2181 5045 9.538508 AAGGAACATAAATACGTGGATAAGTAC 57.461 33.333 0.00 0.00 0.00 2.73
2183 5047 9.457436 AAAAGGAACATAAATACGTGGATAAGT 57.543 29.630 0.00 0.00 0.00 2.24
2207 5071 7.988028 CAGGACAACCCCACTAAAAATTAAAAA 59.012 33.333 0.00 0.00 36.73 1.94
2208 5072 7.344871 TCAGGACAACCCCACTAAAAATTAAAA 59.655 33.333 0.00 0.00 36.73 1.52
2209 5073 6.839657 TCAGGACAACCCCACTAAAAATTAAA 59.160 34.615 0.00 0.00 36.73 1.52
2210 5074 6.374588 TCAGGACAACCCCACTAAAAATTAA 58.625 36.000 0.00 0.00 36.73 1.40
2211 5075 5.954757 TCAGGACAACCCCACTAAAAATTA 58.045 37.500 0.00 0.00 36.73 1.40
2212 5076 4.810345 TCAGGACAACCCCACTAAAAATT 58.190 39.130 0.00 0.00 36.73 1.82
2213 5077 4.463050 TCAGGACAACCCCACTAAAAAT 57.537 40.909 0.00 0.00 36.73 1.82
2214 5078 3.955524 TCAGGACAACCCCACTAAAAA 57.044 42.857 0.00 0.00 36.73 1.94
2215 5079 3.955524 TTCAGGACAACCCCACTAAAA 57.044 42.857 0.00 0.00 36.73 1.52
2216 5080 3.460340 TCTTTCAGGACAACCCCACTAAA 59.540 43.478 0.00 0.00 36.73 1.85
2217 5081 3.050089 TCTTTCAGGACAACCCCACTAA 58.950 45.455 0.00 0.00 36.73 2.24
2218 5082 2.696775 TCTTTCAGGACAACCCCACTA 58.303 47.619 0.00 0.00 36.73 2.74
2219 5083 1.518367 TCTTTCAGGACAACCCCACT 58.482 50.000 0.00 0.00 36.73 4.00
2220 5084 2.358322 TTCTTTCAGGACAACCCCAC 57.642 50.000 0.00 0.00 36.73 4.61
2221 5085 4.946160 ATATTCTTTCAGGACAACCCCA 57.054 40.909 0.00 0.00 36.73 4.96
2222 5086 6.210584 TCAAAATATTCTTTCAGGACAACCCC 59.789 38.462 0.00 0.00 36.73 4.95
2223 5087 7.227049 TCAAAATATTCTTTCAGGACAACCC 57.773 36.000 0.00 0.00 36.73 4.11
2224 5088 9.710900 ATTTCAAAATATTCTTTCAGGACAACC 57.289 29.630 0.00 0.00 0.00 3.77
2252 5116 9.174166 GGAACAATATAAATGTGTAGGTCAAGT 57.826 33.333 0.00 0.00 0.00 3.16
2253 5117 9.173021 TGGAACAATATAAATGTGTAGGTCAAG 57.827 33.333 0.00 0.00 31.92 3.02
2254 5118 9.173021 CTGGAACAATATAAATGTGTAGGTCAA 57.827 33.333 0.00 0.00 38.70 3.18
2255 5119 8.325787 ACTGGAACAATATAAATGTGTAGGTCA 58.674 33.333 0.00 0.00 38.70 4.02
2256 5120 8.612619 CACTGGAACAATATAAATGTGTAGGTC 58.387 37.037 0.00 0.00 38.70 3.85
2257 5121 8.325787 TCACTGGAACAATATAAATGTGTAGGT 58.674 33.333 0.00 0.00 38.70 3.08
2258 5122 8.731275 TCACTGGAACAATATAAATGTGTAGG 57.269 34.615 0.00 0.00 38.70 3.18
2260 5124 9.952030 TCTTCACTGGAACAATATAAATGTGTA 57.048 29.630 0.00 0.00 38.70 2.90
2261 5125 8.862325 TCTTCACTGGAACAATATAAATGTGT 57.138 30.769 0.00 0.00 38.70 3.72
2267 5131 9.513906 TGTTGAATCTTCACTGGAACAATATAA 57.486 29.630 0.00 0.00 36.83 0.98
2268 5132 8.946085 GTGTTGAATCTTCACTGGAACAATATA 58.054 33.333 0.00 0.00 36.83 0.86
2269 5133 7.448161 TGTGTTGAATCTTCACTGGAACAATAT 59.552 33.333 8.95 0.00 36.83 1.28
2270 5134 6.770303 TGTGTTGAATCTTCACTGGAACAATA 59.230 34.615 8.95 0.00 36.83 1.90
2271 5135 5.593909 TGTGTTGAATCTTCACTGGAACAAT 59.406 36.000 8.95 0.00 36.83 2.71
2272 5136 4.946772 TGTGTTGAATCTTCACTGGAACAA 59.053 37.500 8.95 0.00 36.83 2.83
2273 5137 4.522114 TGTGTTGAATCTTCACTGGAACA 58.478 39.130 8.95 0.00 36.83 3.18
2274 5138 5.695851 ATGTGTTGAATCTTCACTGGAAC 57.304 39.130 8.95 0.00 36.83 3.62
2275 5139 9.685276 ATATTATGTGTTGAATCTTCACTGGAA 57.315 29.630 8.95 0.00 36.83 3.53
2276 5140 9.112725 CATATTATGTGTTGAATCTTCACTGGA 57.887 33.333 8.95 0.00 36.83 3.86
2277 5141 8.896744 ACATATTATGTGTTGAATCTTCACTGG 58.103 33.333 8.51 0.00 43.01 4.00
2293 5157 5.352846 TGCACTTTGTACGCACATATTATGT 59.647 36.000 3.40 3.40 46.22 2.29
2294 5158 5.805229 TGCACTTTGTACGCACATATTATG 58.195 37.500 2.03 2.03 33.76 1.90
2295 5159 6.093495 ACTTGCACTTTGTACGCACATATTAT 59.907 34.615 0.00 0.00 34.87 1.28
2296 5160 5.410132 ACTTGCACTTTGTACGCACATATTA 59.590 36.000 0.00 0.00 34.87 0.98
2297 5161 4.215399 ACTTGCACTTTGTACGCACATATT 59.785 37.500 0.00 0.00 34.87 1.28
2298 5162 3.751175 ACTTGCACTTTGTACGCACATAT 59.249 39.130 0.00 0.00 34.87 1.78
2299 5163 3.135225 ACTTGCACTTTGTACGCACATA 58.865 40.909 0.00 0.00 34.87 2.29
2300 5164 1.946768 ACTTGCACTTTGTACGCACAT 59.053 42.857 0.00 0.00 34.87 3.21
2301 5165 1.374560 ACTTGCACTTTGTACGCACA 58.625 45.000 0.00 0.00 34.87 4.57
2302 5166 2.108700 CAACTTGCACTTTGTACGCAC 58.891 47.619 0.00 0.00 34.87 5.34
2303 5167 1.740585 ACAACTTGCACTTTGTACGCA 59.259 42.857 9.84 0.00 34.12 5.24
2304 5168 2.468532 ACAACTTGCACTTTGTACGC 57.531 45.000 9.84 0.00 34.12 4.42
2322 5186 5.104485 AGGGTTATGTCTTCAGGAATGGTAC 60.104 44.000 0.00 0.00 0.00 3.34
2323 5187 5.036916 AGGGTTATGTCTTCAGGAATGGTA 58.963 41.667 0.00 0.00 0.00 3.25
2324 5188 3.852578 AGGGTTATGTCTTCAGGAATGGT 59.147 43.478 0.00 0.00 0.00 3.55
2325 5189 4.510167 AGGGTTATGTCTTCAGGAATGG 57.490 45.455 0.00 0.00 0.00 3.16
2326 5190 4.096984 GCAAGGGTTATGTCTTCAGGAATG 59.903 45.833 0.00 0.00 0.00 2.67
2327 5191 4.263905 TGCAAGGGTTATGTCTTCAGGAAT 60.264 41.667 0.00 0.00 0.00 3.01
2328 5192 3.073798 TGCAAGGGTTATGTCTTCAGGAA 59.926 43.478 0.00 0.00 0.00 3.36
2329 5193 2.642311 TGCAAGGGTTATGTCTTCAGGA 59.358 45.455 0.00 0.00 0.00 3.86
2330 5194 3.071874 TGCAAGGGTTATGTCTTCAGG 57.928 47.619 0.00 0.00 0.00 3.86
2331 5195 5.649782 ATTTGCAAGGGTTATGTCTTCAG 57.350 39.130 0.00 0.00 0.00 3.02
2332 5196 5.538053 TGAATTTGCAAGGGTTATGTCTTCA 59.462 36.000 0.00 0.00 0.00 3.02
2333 5197 6.024552 TGAATTTGCAAGGGTTATGTCTTC 57.975 37.500 0.00 0.00 0.00 2.87
2334 5198 6.418057 TTGAATTTGCAAGGGTTATGTCTT 57.582 33.333 0.00 0.00 0.00 3.01
2335 5199 6.418057 TTTGAATTTGCAAGGGTTATGTCT 57.582 33.333 0.00 0.00 0.00 3.41
2336 5200 7.489574 TTTTTGAATTTGCAAGGGTTATGTC 57.510 32.000 0.00 0.00 0.00 3.06
2337 5201 7.718753 TGATTTTTGAATTTGCAAGGGTTATGT 59.281 29.630 0.00 0.00 0.00 2.29
2338 5202 8.097078 TGATTTTTGAATTTGCAAGGGTTATG 57.903 30.769 0.00 0.00 0.00 1.90
2339 5203 8.866970 ATGATTTTTGAATTTGCAAGGGTTAT 57.133 26.923 0.00 0.00 0.00 1.89
2340 5204 7.390162 GGATGATTTTTGAATTTGCAAGGGTTA 59.610 33.333 0.00 0.00 0.00 2.85
2341 5205 6.207221 GGATGATTTTTGAATTTGCAAGGGTT 59.793 34.615 0.00 0.00 0.00 4.11
2342 5206 5.706833 GGATGATTTTTGAATTTGCAAGGGT 59.293 36.000 0.00 0.00 0.00 4.34
2343 5207 5.706369 TGGATGATTTTTGAATTTGCAAGGG 59.294 36.000 0.00 0.00 0.00 3.95
2344 5208 6.804770 TGGATGATTTTTGAATTTGCAAGG 57.195 33.333 0.00 0.00 0.00 3.61
2345 5209 7.753132 CCATTGGATGATTTTTGAATTTGCAAG 59.247 33.333 0.00 0.00 0.00 4.01
2346 5210 7.230913 ACCATTGGATGATTTTTGAATTTGCAA 59.769 29.630 10.37 0.00 0.00 4.08
2347 5211 6.715718 ACCATTGGATGATTTTTGAATTTGCA 59.284 30.769 10.37 0.00 0.00 4.08
2348 5212 7.148355 ACCATTGGATGATTTTTGAATTTGC 57.852 32.000 10.37 0.00 0.00 3.68
2350 5214 9.230122 GGTAACCATTGGATGATTTTTGAATTT 57.770 29.630 10.37 0.00 0.00 1.82
2351 5215 8.381636 TGGTAACCATTGGATGATTTTTGAATT 58.618 29.630 10.37 0.00 0.00 2.17
2352 5216 7.915930 TGGTAACCATTGGATGATTTTTGAAT 58.084 30.769 10.37 0.00 0.00 2.57
2353 5217 7.308450 TGGTAACCATTGGATGATTTTTGAA 57.692 32.000 10.37 0.00 0.00 2.69
2354 5218 6.924913 TGGTAACCATTGGATGATTTTTGA 57.075 33.333 10.37 0.00 0.00 2.69
2355 5219 7.160726 AGTTGGTAACCATTGGATGATTTTTG 58.839 34.615 10.37 0.00 31.53 2.44
2356 5220 7.235399 AGAGTTGGTAACCATTGGATGATTTTT 59.765 33.333 10.37 0.00 31.53 1.94
2357 5221 6.725834 AGAGTTGGTAACCATTGGATGATTTT 59.274 34.615 10.37 0.00 31.53 1.82
2358 5222 6.256053 AGAGTTGGTAACCATTGGATGATTT 58.744 36.000 10.37 0.00 31.53 2.17
2359 5223 5.831103 AGAGTTGGTAACCATTGGATGATT 58.169 37.500 10.37 0.00 31.53 2.57
2360 5224 5.456921 AGAGTTGGTAACCATTGGATGAT 57.543 39.130 10.37 0.00 31.53 2.45
2361 5225 4.927267 AGAGTTGGTAACCATTGGATGA 57.073 40.909 10.37 0.00 31.53 2.92
2362 5226 5.476599 TCAAAGAGTTGGTAACCATTGGATG 59.523 40.000 10.37 0.00 35.29 3.51
2363 5227 5.640147 TCAAAGAGTTGGTAACCATTGGAT 58.360 37.500 10.37 0.00 35.29 3.41
2364 5228 5.055265 TCAAAGAGTTGGTAACCATTGGA 57.945 39.130 10.37 0.00 35.29 3.53
2365 5229 5.070001 TCTCAAAGAGTTGGTAACCATTGG 58.930 41.667 0.00 0.00 35.29 3.16
2366 5230 6.633500 TTCTCAAAGAGTTGGTAACCATTG 57.367 37.500 0.00 0.00 35.29 2.82
2367 5231 6.239036 GCTTTCTCAAAGAGTTGGTAACCATT 60.239 38.462 0.01 0.00 41.02 3.16
2368 5232 5.241728 GCTTTCTCAAAGAGTTGGTAACCAT 59.758 40.000 0.01 0.00 41.02 3.55
2369 5233 4.578928 GCTTTCTCAAAGAGTTGGTAACCA 59.421 41.667 0.01 0.00 41.02 3.67
2370 5234 4.578928 TGCTTTCTCAAAGAGTTGGTAACC 59.421 41.667 0.01 0.00 41.02 2.85
2371 5235 5.751243 TGCTTTCTCAAAGAGTTGGTAAC 57.249 39.130 0.01 0.00 41.02 2.50
2372 5236 4.275936 GCTGCTTTCTCAAAGAGTTGGTAA 59.724 41.667 0.01 0.00 41.02 2.85
2373 5237 3.815401 GCTGCTTTCTCAAAGAGTTGGTA 59.185 43.478 0.01 0.00 41.02 3.25
2374 5238 2.620585 GCTGCTTTCTCAAAGAGTTGGT 59.379 45.455 0.01 0.00 41.02 3.67
2375 5239 2.620115 TGCTGCTTTCTCAAAGAGTTGG 59.380 45.455 0.00 0.00 41.02 3.77
2376 5240 3.976793 TGCTGCTTTCTCAAAGAGTTG 57.023 42.857 0.00 0.00 41.02 3.16
2377 5241 3.305199 GCATGCTGCTTTCTCAAAGAGTT 60.305 43.478 11.37 0.00 40.96 3.01
2378 5242 2.228343 GCATGCTGCTTTCTCAAAGAGT 59.772 45.455 11.37 0.00 40.96 3.24
2379 5243 2.228103 TGCATGCTGCTTTCTCAAAGAG 59.772 45.455 20.33 0.00 45.31 2.85
2380 5244 2.030540 GTGCATGCTGCTTTCTCAAAGA 60.031 45.455 20.33 0.00 45.31 2.52
2381 5245 2.030185 AGTGCATGCTGCTTTCTCAAAG 60.030 45.455 20.33 0.00 45.31 2.77
2382 5246 1.958579 AGTGCATGCTGCTTTCTCAAA 59.041 42.857 20.33 0.00 45.31 2.69
2383 5247 1.612676 AGTGCATGCTGCTTTCTCAA 58.387 45.000 20.33 0.00 45.31 3.02
2384 5248 2.027837 TCTAGTGCATGCTGCTTTCTCA 60.028 45.455 20.33 1.19 45.31 3.27
2385 5249 2.625737 TCTAGTGCATGCTGCTTTCTC 58.374 47.619 20.33 0.00 45.31 2.87
2386 5250 2.775911 TCTAGTGCATGCTGCTTTCT 57.224 45.000 20.33 9.69 45.31 2.52
2387 5251 3.376234 TGAATCTAGTGCATGCTGCTTTC 59.624 43.478 20.33 16.02 45.31 2.62
2388 5252 3.349927 TGAATCTAGTGCATGCTGCTTT 58.650 40.909 20.33 8.36 45.31 3.51
2389 5253 2.995283 TGAATCTAGTGCATGCTGCTT 58.005 42.857 20.33 4.50 45.31 3.91
2390 5254 2.681848 GTTGAATCTAGTGCATGCTGCT 59.318 45.455 20.33 18.32 45.31 4.24
2391 5255 2.421073 TGTTGAATCTAGTGCATGCTGC 59.579 45.455 20.33 11.82 45.29 5.25
2392 5256 4.690184 TTGTTGAATCTAGTGCATGCTG 57.310 40.909 20.33 6.73 0.00 4.41
2393 5257 5.909621 AATTGTTGAATCTAGTGCATGCT 57.090 34.783 20.33 1.26 0.00 3.79
2394 5258 7.541783 TGTTTAATTGTTGAATCTAGTGCATGC 59.458 33.333 11.82 11.82 0.00 4.06
2395 5259 8.853345 GTGTTTAATTGTTGAATCTAGTGCATG 58.147 33.333 0.00 0.00 0.00 4.06
2396 5260 8.575589 TGTGTTTAATTGTTGAATCTAGTGCAT 58.424 29.630 0.00 0.00 0.00 3.96
2397 5261 7.935520 TGTGTTTAATTGTTGAATCTAGTGCA 58.064 30.769 0.00 0.00 0.00 4.57
2398 5262 8.795786 TTGTGTTTAATTGTTGAATCTAGTGC 57.204 30.769 0.00 0.00 0.00 4.40
2399 5263 8.905702 GCTTGTGTTTAATTGTTGAATCTAGTG 58.094 33.333 0.00 0.00 0.00 2.74
2400 5264 8.629158 TGCTTGTGTTTAATTGTTGAATCTAGT 58.371 29.630 0.00 0.00 0.00 2.57
2401 5265 9.462174 TTGCTTGTGTTTAATTGTTGAATCTAG 57.538 29.630 0.00 0.00 0.00 2.43
2402 5266 9.979578 ATTGCTTGTGTTTAATTGTTGAATCTA 57.020 25.926 0.00 0.00 0.00 1.98
2403 5267 8.891671 ATTGCTTGTGTTTAATTGTTGAATCT 57.108 26.923 0.00 0.00 0.00 2.40
2407 5271 9.593134 ACTTTATTGCTTGTGTTTAATTGTTGA 57.407 25.926 0.00 0.00 0.00 3.18
2410 5274 9.593134 TGAACTTTATTGCTTGTGTTTAATTGT 57.407 25.926 0.00 0.00 0.00 2.71
2414 5278 9.039870 CCATTGAACTTTATTGCTTGTGTTTAA 57.960 29.630 0.00 0.00 0.00 1.52
2415 5279 8.200792 ACCATTGAACTTTATTGCTTGTGTTTA 58.799 29.630 0.00 0.00 0.00 2.01
2416 5280 7.047271 ACCATTGAACTTTATTGCTTGTGTTT 58.953 30.769 0.00 0.00 0.00 2.83
2417 5281 6.581712 ACCATTGAACTTTATTGCTTGTGTT 58.418 32.000 0.00 0.00 0.00 3.32
2418 5282 6.160576 ACCATTGAACTTTATTGCTTGTGT 57.839 33.333 0.00 0.00 0.00 3.72
2419 5283 8.028354 TGATACCATTGAACTTTATTGCTTGTG 58.972 33.333 0.00 0.00 0.00 3.33
2420 5284 8.121305 TGATACCATTGAACTTTATTGCTTGT 57.879 30.769 0.00 0.00 0.00 3.16
2421 5285 9.590451 AATGATACCATTGAACTTTATTGCTTG 57.410 29.630 0.00 0.00 41.18 4.01
2472 5336 5.013704 TCAGGTAGACCAGCCTTAAATCAAA 59.986 40.000 0.66 0.00 38.89 2.69
2513 5377 7.269724 CGCATAGACACGACGATAATACATTTA 59.730 37.037 0.00 0.00 0.00 1.40
2517 5381 4.460505 CGCATAGACACGACGATAATACA 58.539 43.478 0.00 0.00 0.00 2.29
2518 5382 3.297461 GCGCATAGACACGACGATAATAC 59.703 47.826 0.30 0.00 0.00 1.89
2526 5390 2.878991 TGCGCGCATAGACACGAC 60.879 61.111 33.09 0.00 0.00 4.34
2527 5391 2.878991 GTGCGCGCATAGACACGA 60.879 61.111 38.62 7.63 0.00 4.35
2528 5392 3.130424 CTGTGCGCGCATAGACACG 62.130 63.158 43.31 23.35 37.35 4.49
2554 5418 1.819632 GATTCGGGCAATGGTCGCT 60.820 57.895 0.00 0.00 0.00 4.93
2555 5419 2.715624 GATTCGGGCAATGGTCGC 59.284 61.111 0.00 0.00 0.00 5.19
2593 5457 4.450053 GAGAGTAGTACACGGTAGATGGT 58.550 47.826 2.52 0.00 0.00 3.55
2601 5465 1.677942 GGAGGGAGAGTAGTACACGG 58.322 60.000 2.52 0.00 0.00 4.94
2602 5466 1.212441 AGGGAGGGAGAGTAGTACACG 59.788 57.143 2.52 0.00 0.00 4.49
2671 5535 0.037975 GCAGCCAATGTGGGACTTTG 60.038 55.000 0.00 0.00 38.19 2.77
2701 5565 4.468689 CTCCGCCCTTTCCGACCC 62.469 72.222 0.00 0.00 0.00 4.46
2702 5566 2.743126 AAACTCCGCCCTTTCCGACC 62.743 60.000 0.00 0.00 0.00 4.79
2707 5571 1.450025 CCTACAAACTCCGCCCTTTC 58.550 55.000 0.00 0.00 0.00 2.62
2708 5572 0.608308 GCCTACAAACTCCGCCCTTT 60.608 55.000 0.00 0.00 0.00 3.11
2710 5574 2.669240 GCCTACAAACTCCGCCCT 59.331 61.111 0.00 0.00 0.00 5.19
2816 5680 1.639280 CGCCTGTTTGCAAAACTTGT 58.361 45.000 14.67 0.00 0.00 3.16
2827 5691 1.371558 GGAGAGTGTCCGCCTGTTT 59.628 57.895 0.00 0.00 34.84 2.83
2836 5700 1.153862 CAGCGCAGAGGAGAGTGTC 60.154 63.158 11.47 0.00 0.00 3.67
2907 5771 5.163540 CGGTTTGAGACCTACTAGCATACTT 60.164 44.000 0.00 0.00 46.92 2.24
2908 5772 4.338682 CGGTTTGAGACCTACTAGCATACT 59.661 45.833 0.00 0.00 46.92 2.12
2939 5803 1.168714 GCAGCTAACAAAGGACCAGG 58.831 55.000 0.00 0.00 0.00 4.45
2966 5830 1.925455 CAGGTGAGGATGGTGGGGT 60.925 63.158 0.00 0.00 0.00 4.95
2987 5851 4.483476 AGAAAACGGTGTAATTGAGCAC 57.517 40.909 0.00 0.00 35.07 4.40
2988 5852 6.401688 CGAATAGAAAACGGTGTAATTGAGCA 60.402 38.462 0.00 0.00 0.00 4.26


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.