Multiple sequence alignment - TraesCS6D01G003300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G003300 chr6D 100.000 4468 0 0 1648 6115 1780344 1784811 0.000000e+00 8251.0
1 TraesCS6D01G003300 chr6D 100.000 1101 0 0 1 1101 1778697 1779797 0.000000e+00 2034.0
2 TraesCS6D01G003300 chr6D 96.296 54 1 1 3600 3653 1782220 1782272 3.040000e-13 87.9
3 TraesCS6D01G003300 chr6D 96.296 54 1 1 3524 3576 1782296 1782349 3.040000e-13 87.9
4 TraesCS6D01G003300 chr6D 91.111 45 0 4 2719 2760 462637168 462637125 2.380000e-04 58.4
5 TraesCS6D01G003300 chr6A 96.188 2886 71 16 2394 5248 957192 960069 0.000000e+00 4684.0
6 TraesCS6D01G003300 chr6A 90.000 620 42 11 1648 2262 955817 956421 0.000000e+00 784.0
7 TraesCS6D01G003300 chr6A 78.102 822 91 42 317 1095 954532 955307 7.280000e-119 438.0
8 TraesCS6D01G003300 chr6A 90.556 180 17 0 5516 5695 960337 960516 7.920000e-59 239.0
9 TraesCS6D01G003300 chr6A 77.586 406 62 17 5722 6115 960738 961126 1.030000e-52 219.0
10 TraesCS6D01G003300 chr6A 89.222 167 14 3 5281 5445 960161 960325 8.030000e-49 206.0
11 TraesCS6D01G003300 chr6A 95.890 73 3 0 2318 2390 956419 956491 1.080000e-22 119.0
12 TraesCS6D01G003300 chr6A 96.226 53 1 1 3524 3575 958422 958474 1.090000e-12 86.1
13 TraesCS6D01G003300 chr6B 83.724 1493 127 55 3792 5248 4861215 4859803 0.000000e+00 1304.0
14 TraesCS6D01G003300 chr6B 83.333 642 69 21 2897 3525 4861886 4861270 5.350000e-155 558.0
15 TraesCS6D01G003300 chr6B 88.199 483 28 9 2394 2870 4862341 4861882 3.220000e-152 549.0
16 TraesCS6D01G003300 chr6B 82.149 605 49 20 5565 6115 4858894 4858295 1.200000e-126 464.0
17 TraesCS6D01G003300 chr6B 80.117 513 72 24 1649 2141 4863331 4862829 7.540000e-94 355.0
18 TraesCS6D01G003300 chr6B 82.534 292 50 1 5538 5828 239359010 239358719 7.870000e-64 255.0
19 TraesCS6D01G003300 chr6B 83.217 286 27 12 5281 5561 4859698 4859429 6.120000e-60 243.0
20 TraesCS6D01G003300 chr6B 78.718 390 25 24 727 1101 4863793 4863447 2.230000e-49 207.0
21 TraesCS6D01G003300 chr6B 85.294 136 20 0 2447 2582 631035194 631035329 2.300000e-29 141.0
22 TraesCS6D01G003300 chr6B 85.294 68 7 3 2701 2765 32299813 32299746 3.960000e-07 67.6
23 TraesCS6D01G003300 chr5B 77.454 1579 241 70 3569 5092 636402495 636400977 0.000000e+00 837.0
24 TraesCS6D01G003300 chr5B 81.763 329 42 12 3013 3332 636403187 636402868 6.080000e-65 259.0
25 TraesCS6D01G003300 chr5B 80.797 276 38 12 1676 1941 636404718 636404448 1.040000e-47 202.0
26 TraesCS6D01G003300 chr5B 86.538 156 17 2 2565 2719 636403572 636403420 1.050000e-37 169.0
27 TraesCS6D01G003300 chr5B 87.970 133 11 4 1649 1777 547960485 547960616 1.060000e-32 152.0
28 TraesCS6D01G003300 chr5D 76.884 1579 256 62 3582 5107 505941709 505940187 0.000000e+00 793.0
29 TraesCS6D01G003300 chr5D 85.627 327 35 9 3014 3332 505949305 505948983 3.530000e-87 333.0
30 TraesCS6D01G003300 chr5D 87.500 160 15 3 2570 2727 505949771 505949615 4.870000e-41 180.0
31 TraesCS6D01G003300 chr5D 88.189 127 12 2 1649 1772 438254122 438253996 1.370000e-31 148.0
32 TraesCS6D01G003300 chr5D 97.222 36 1 0 2728 2763 554506313 554506278 1.840000e-05 62.1
33 TraesCS6D01G003300 chr5A 77.778 1107 169 47 4016 5092 633644781 633643722 1.460000e-170 610.0
34 TraesCS6D01G003300 chr5A 82.927 328 44 9 3013 3332 633645929 633645606 1.000000e-72 285.0
35 TraesCS6D01G003300 chr5A 87.129 101 11 2 2566 2665 633646543 633646444 5.010000e-21 113.0
36 TraesCS6D01G003300 chr2B 84.483 290 43 2 5541 5828 653841074 653841363 1.000000e-72 285.0
37 TraesCS6D01G003300 chr2B 78.750 240 46 3 5543 5780 6377983 6378219 8.210000e-34 156.0
38 TraesCS6D01G003300 chr2B 78.333 240 47 3 5543 5780 6407150 6407386 3.820000e-32 150.0
39 TraesCS6D01G003300 chr2B 95.000 40 2 0 2724 2763 551568351 551568390 5.120000e-06 63.9
40 TraesCS6D01G003300 chr2A 75.820 488 79 26 4094 4578 749893834 749894285 1.730000e-50 211.0
41 TraesCS6D01G003300 chr2A 94.737 38 2 0 2726 2763 241968110 241968147 6.620000e-05 60.2
42 TraesCS6D01G003300 chr7D 79.655 290 46 6 5539 5828 616706633 616706909 4.840000e-46 196.0
43 TraesCS6D01G003300 chr7D 94.737 38 2 0 2726 2763 47415577 47415540 6.620000e-05 60.2
44 TraesCS6D01G003300 chr3B 86.047 172 24 0 5645 5816 228740174 228740345 1.050000e-42 185.0
45 TraesCS6D01G003300 chr2D 83.708 178 27 2 5652 5828 558960493 558960317 3.790000e-37 167.0
46 TraesCS6D01G003300 chr2D 88.976 127 11 2 1649 1772 525669161 525669287 2.950000e-33 154.0
47 TraesCS6D01G003300 chr2D 88.618 123 11 2 1649 1768 60276421 60276299 4.940000e-31 147.0
48 TraesCS6D01G003300 chr3D 87.121 132 14 1 1649 1777 97255944 97256075 4.940000e-31 147.0
49 TraesCS6D01G003300 chr1D 87.402 127 13 2 1649 1772 323480220 323480346 6.390000e-30 143.0
50 TraesCS6D01G003300 chr1D 97.143 35 1 0 2729 2763 382633904 382633938 6.620000e-05 60.2
51 TraesCS6D01G003300 chr4B 97.143 35 1 0 2729 2763 144758289 144758323 6.620000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G003300 chr6D 1778697 1784811 6114 False 2615.200000 8251 98.148000 1 6115 4 chr6D.!!$F1 6114
1 TraesCS6D01G003300 chr6A 954532 961126 6594 False 846.887500 4684 89.221250 317 6115 8 chr6A.!!$F1 5798
2 TraesCS6D01G003300 chr6B 4858295 4863793 5498 True 525.714286 1304 82.779571 727 6115 7 chr6B.!!$R3 5388
3 TraesCS6D01G003300 chr5B 636400977 636404718 3741 True 366.750000 837 81.638000 1676 5092 4 chr5B.!!$R1 3416
4 TraesCS6D01G003300 chr5D 505940187 505941709 1522 True 793.000000 793 76.884000 3582 5107 1 chr5D.!!$R2 1525
5 TraesCS6D01G003300 chr5D 505948983 505949771 788 True 256.500000 333 86.563500 2570 3332 2 chr5D.!!$R4 762
6 TraesCS6D01G003300 chr5A 633643722 633646543 2821 True 336.000000 610 82.611333 2566 5092 3 chr5A.!!$R1 2526

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
518 520 0.035036 TGAAAACCACGGTATCGCCA 59.965 50.000 0.00 0.0 40.63 5.69 F
541 543 0.250727 TTTGCCAAGAGGAGGAACCG 60.251 55.000 0.00 0.0 44.74 4.44 F
830 867 0.729690 GAGAGTGAAATGGGCTTCGC 59.270 55.000 0.00 0.0 36.31 4.70 F
2149 2275 0.032952 GCCAAGGTATGTATCCGCGA 59.967 55.000 8.23 0.0 0.00 5.87 F
2280 2412 0.472471 AGTGGTTCATTGGTCCGTGT 59.528 50.000 0.00 0.0 0.00 4.49 F
3187 4505 1.739667 GGTGACAACCCAAGCAACC 59.260 57.895 0.00 0.0 41.04 3.77 F
4210 5818 0.386478 GAAGACGCAAGCAAAGGCAG 60.386 55.000 0.00 0.0 44.61 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1672 1718 0.250338 ACCTTCCGAGCACAAGAACC 60.250 55.0 0.00 0.00 0.00 3.62 R
1853 1912 0.829602 TGCCCTGCAAAAATCGGGAA 60.830 50.0 10.54 0.00 39.08 3.97 R
2262 2394 1.314730 AACACGGACCAATGAACCAC 58.685 50.0 0.00 0.00 0.00 4.16 R
3003 4321 1.535204 GCCTCAACAACACCCCATGG 61.535 60.0 4.14 4.14 37.80 3.66 R
3971 5562 2.306715 AAAAAGGGGCCGGGAACAGT 62.307 55.0 2.18 0.00 0.00 3.55 R
4399 6007 0.607489 CCTGTTTCCTCCAGCACCAG 60.607 60.0 0.00 0.00 0.00 4.00 R
5248 6911 0.239879 CAATTTCCAACCGTCCCGTG 59.760 55.0 0.00 0.00 0.00 4.94 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 3.539604 CCTGAAAACTATGCAGAGAGGG 58.460 50.000 16.75 3.82 0.00 4.30
22 23 2.941720 CTGAAAACTATGCAGAGAGGGC 59.058 50.000 16.75 2.40 0.00 5.19
23 24 2.305635 TGAAAACTATGCAGAGAGGGCA 59.694 45.455 16.75 5.07 46.66 5.36
24 25 2.409948 AAACTATGCAGAGAGGGCAC 57.590 50.000 16.75 0.00 45.23 5.01
59 60 6.753107 AAAAATACAAGAACGTCCATAGGG 57.247 37.500 0.00 0.00 0.00 3.53
60 61 4.417426 AATACAAGAACGTCCATAGGGG 57.583 45.455 0.00 0.00 38.37 4.79
61 62 1.652947 ACAAGAACGTCCATAGGGGT 58.347 50.000 0.00 0.00 38.11 4.95
62 63 1.982958 ACAAGAACGTCCATAGGGGTT 59.017 47.619 0.00 0.00 38.11 4.11
63 64 2.027469 ACAAGAACGTCCATAGGGGTTC 60.027 50.000 7.29 7.29 37.06 3.62
64 65 1.201424 AGAACGTCCATAGGGGTTCC 58.799 55.000 10.69 0.00 37.30 3.62
65 66 0.179702 GAACGTCCATAGGGGTTCCC 59.820 60.000 4.71 0.00 45.90 3.97
78 79 4.912485 TTCCCGCACGCACCGAAA 62.912 61.111 0.00 0.00 0.00 3.46
81 82 2.735478 CCGCACGCACCGAAACTA 60.735 61.111 0.00 0.00 0.00 2.24
82 83 2.311701 CCGCACGCACCGAAACTAA 61.312 57.895 0.00 0.00 0.00 2.24
83 84 1.154727 CGCACGCACCGAAACTAAC 60.155 57.895 0.00 0.00 0.00 2.34
84 85 1.154727 GCACGCACCGAAACTAACG 60.155 57.895 0.00 0.00 0.00 3.18
85 86 1.550659 GCACGCACCGAAACTAACGA 61.551 55.000 0.00 0.00 0.00 3.85
86 87 1.065358 CACGCACCGAAACTAACGAT 58.935 50.000 0.00 0.00 0.00 3.73
87 88 1.458064 CACGCACCGAAACTAACGATT 59.542 47.619 0.00 0.00 0.00 3.34
88 89 1.458064 ACGCACCGAAACTAACGATTG 59.542 47.619 0.00 0.00 0.00 2.67
89 90 1.458064 CGCACCGAAACTAACGATTGT 59.542 47.619 0.00 0.00 0.00 2.71
90 91 2.662637 CGCACCGAAACTAACGATTGTA 59.337 45.455 0.00 0.00 0.00 2.41
91 92 3.241552 CGCACCGAAACTAACGATTGTAG 60.242 47.826 0.00 0.00 0.00 2.74
92 93 3.483085 GCACCGAAACTAACGATTGTAGC 60.483 47.826 0.00 0.00 0.00 3.58
93 94 3.061697 CACCGAAACTAACGATTGTAGCC 59.938 47.826 0.00 0.00 0.00 3.93
94 95 3.255725 CCGAAACTAACGATTGTAGCCA 58.744 45.455 0.00 0.00 0.00 4.75
95 96 3.680937 CCGAAACTAACGATTGTAGCCAA 59.319 43.478 0.00 0.00 34.45 4.52
96 97 4.331717 CCGAAACTAACGATTGTAGCCAAT 59.668 41.667 0.00 0.00 43.97 3.16
97 98 5.521010 CCGAAACTAACGATTGTAGCCAATA 59.479 40.000 0.00 0.00 41.37 1.90
98 99 6.408428 CGAAACTAACGATTGTAGCCAATAC 58.592 40.000 0.00 0.00 41.37 1.89
99 100 6.509039 CGAAACTAACGATTGTAGCCAATACC 60.509 42.308 0.00 0.00 41.37 2.73
100 101 4.700700 ACTAACGATTGTAGCCAATACCC 58.299 43.478 0.00 0.00 41.37 3.69
101 102 3.637911 AACGATTGTAGCCAATACCCA 57.362 42.857 0.00 0.00 41.37 4.51
102 103 3.637911 ACGATTGTAGCCAATACCCAA 57.362 42.857 0.00 0.00 41.37 4.12
103 104 4.164843 ACGATTGTAGCCAATACCCAAT 57.835 40.909 0.00 0.00 41.37 3.16
104 105 3.882888 ACGATTGTAGCCAATACCCAATG 59.117 43.478 0.00 0.00 41.37 2.82
105 106 3.304659 CGATTGTAGCCAATACCCAATGC 60.305 47.826 0.00 0.00 41.37 3.56
106 107 2.065899 TGTAGCCAATACCCAATGCC 57.934 50.000 0.00 0.00 33.01 4.40
107 108 0.951558 GTAGCCAATACCCAATGCCG 59.048 55.000 0.00 0.00 0.00 5.69
108 109 0.179004 TAGCCAATACCCAATGCCGG 60.179 55.000 0.00 0.00 0.00 6.13
109 110 3.128375 CCAATACCCAATGCCGGC 58.872 61.111 22.73 22.73 0.00 6.13
110 111 1.756172 CCAATACCCAATGCCGGCA 60.756 57.895 34.80 34.80 0.00 5.69
111 112 1.326213 CCAATACCCAATGCCGGCAA 61.326 55.000 36.33 17.20 0.00 4.52
112 113 0.102844 CAATACCCAATGCCGGCAAG 59.897 55.000 36.33 27.76 0.00 4.01
113 114 1.042559 AATACCCAATGCCGGCAAGG 61.043 55.000 36.33 34.40 44.97 3.61
125 126 3.423154 GCAAGGCGTTCACCGGAG 61.423 66.667 9.46 0.00 36.94 4.63
126 127 2.342279 CAAGGCGTTCACCGGAGA 59.658 61.111 9.46 1.33 36.94 3.71
127 128 1.301401 CAAGGCGTTCACCGGAGAA 60.301 57.895 9.46 10.09 36.94 2.87
128 129 1.004918 AAGGCGTTCACCGGAGAAG 60.005 57.895 15.07 10.07 36.94 2.85
129 130 1.469335 AAGGCGTTCACCGGAGAAGA 61.469 55.000 15.07 0.46 36.94 2.87
130 131 1.446272 GGCGTTCACCGGAGAAGAG 60.446 63.158 15.07 12.73 36.94 2.85
131 132 1.446272 GCGTTCACCGGAGAAGAGG 60.446 63.158 15.07 8.49 36.94 3.69
132 133 1.446272 CGTTCACCGGAGAAGAGGC 60.446 63.158 15.07 2.35 0.00 4.70
133 134 1.671742 GTTCACCGGAGAAGAGGCA 59.328 57.895 15.07 0.00 0.00 4.75
134 135 0.670854 GTTCACCGGAGAAGAGGCAC 60.671 60.000 15.07 0.00 0.00 5.01
135 136 1.118965 TTCACCGGAGAAGAGGCACA 61.119 55.000 9.46 0.00 0.00 4.57
136 137 1.118965 TCACCGGAGAAGAGGCACAA 61.119 55.000 9.46 0.00 0.00 3.33
137 138 0.250295 CACCGGAGAAGAGGCACAAA 60.250 55.000 9.46 0.00 0.00 2.83
138 139 0.250338 ACCGGAGAAGAGGCACAAAC 60.250 55.000 9.46 0.00 0.00 2.93
139 140 0.250295 CCGGAGAAGAGGCACAAACA 60.250 55.000 0.00 0.00 0.00 2.83
140 141 1.611673 CCGGAGAAGAGGCACAAACAT 60.612 52.381 0.00 0.00 0.00 2.71
141 142 1.734465 CGGAGAAGAGGCACAAACATC 59.266 52.381 0.00 0.00 0.00 3.06
142 143 2.087646 GGAGAAGAGGCACAAACATCC 58.912 52.381 0.00 0.00 0.00 3.51
143 144 2.553028 GGAGAAGAGGCACAAACATCCA 60.553 50.000 0.00 0.00 0.00 3.41
144 145 2.485814 GAGAAGAGGCACAAACATCCAC 59.514 50.000 0.00 0.00 0.00 4.02
145 146 2.107204 AGAAGAGGCACAAACATCCACT 59.893 45.455 0.00 0.00 0.00 4.00
146 147 3.327757 AGAAGAGGCACAAACATCCACTA 59.672 43.478 0.00 0.00 0.00 2.74
147 148 4.018960 AGAAGAGGCACAAACATCCACTAT 60.019 41.667 0.00 0.00 0.00 2.12
148 149 3.878778 AGAGGCACAAACATCCACTATC 58.121 45.455 0.00 0.00 0.00 2.08
149 150 3.521126 AGAGGCACAAACATCCACTATCT 59.479 43.478 0.00 0.00 0.00 1.98
150 151 4.018960 AGAGGCACAAACATCCACTATCTT 60.019 41.667 0.00 0.00 0.00 2.40
151 152 4.265073 AGGCACAAACATCCACTATCTTC 58.735 43.478 0.00 0.00 0.00 2.87
152 153 4.009675 GGCACAAACATCCACTATCTTCA 58.990 43.478 0.00 0.00 0.00 3.02
153 154 4.095483 GGCACAAACATCCACTATCTTCAG 59.905 45.833 0.00 0.00 0.00 3.02
154 155 4.937620 GCACAAACATCCACTATCTTCAGA 59.062 41.667 0.00 0.00 0.00 3.27
155 156 5.587844 GCACAAACATCCACTATCTTCAGAT 59.412 40.000 0.00 0.00 38.51 2.90
156 157 6.238320 GCACAAACATCCACTATCTTCAGATC 60.238 42.308 0.00 0.00 36.05 2.75
157 158 6.259608 CACAAACATCCACTATCTTCAGATCC 59.740 42.308 0.00 0.00 36.05 3.36
158 159 6.070021 ACAAACATCCACTATCTTCAGATCCA 60.070 38.462 0.00 0.00 36.05 3.41
159 160 6.566079 AACATCCACTATCTTCAGATCCAA 57.434 37.500 0.00 0.00 36.05 3.53
160 161 6.172136 ACATCCACTATCTTCAGATCCAAG 57.828 41.667 0.00 0.00 36.05 3.61
161 162 5.071519 ACATCCACTATCTTCAGATCCAAGG 59.928 44.000 0.00 0.00 36.05 3.61
162 163 3.969976 TCCACTATCTTCAGATCCAAGGG 59.030 47.826 0.00 0.00 36.05 3.95
163 164 3.969976 CCACTATCTTCAGATCCAAGGGA 59.030 47.826 0.00 0.00 36.05 4.20
164 165 4.202305 CCACTATCTTCAGATCCAAGGGAC 60.202 50.000 0.00 0.00 32.98 4.46
165 166 4.406972 CACTATCTTCAGATCCAAGGGACA 59.593 45.833 0.00 0.00 32.98 4.02
166 167 3.922171 ATCTTCAGATCCAAGGGACAC 57.078 47.619 2.88 0.00 32.98 3.67
167 168 1.909302 TCTTCAGATCCAAGGGACACC 59.091 52.381 2.88 0.00 32.98 4.16
168 169 1.630369 CTTCAGATCCAAGGGACACCA 59.370 52.381 0.00 0.00 40.13 4.17
169 170 1.971149 TCAGATCCAAGGGACACCAT 58.029 50.000 0.00 0.00 40.13 3.55
170 171 1.839994 TCAGATCCAAGGGACACCATC 59.160 52.381 0.00 0.00 40.13 3.51
171 172 0.833287 AGATCCAAGGGACACCATCG 59.167 55.000 0.00 0.00 40.13 3.84
172 173 0.815615 GATCCAAGGGACACCATCGC 60.816 60.000 0.00 0.00 40.13 4.58
173 174 2.270874 ATCCAAGGGACACCATCGCC 62.271 60.000 0.00 0.00 41.22 5.54
174 175 2.350895 CAAGGGACACCATCGCCA 59.649 61.111 0.00 0.00 41.22 5.69
175 176 1.077501 CAAGGGACACCATCGCCAT 60.078 57.895 0.00 0.00 41.22 4.40
176 177 0.180171 CAAGGGACACCATCGCCATA 59.820 55.000 0.00 0.00 41.22 2.74
177 178 0.916086 AAGGGACACCATCGCCATAA 59.084 50.000 0.00 0.00 41.22 1.90
178 179 0.916086 AGGGACACCATCGCCATAAA 59.084 50.000 0.00 0.00 41.22 1.40
179 180 1.134098 AGGGACACCATCGCCATAAAG 60.134 52.381 0.00 0.00 41.22 1.85
180 181 1.308998 GGACACCATCGCCATAAAGG 58.691 55.000 0.00 0.00 41.84 3.11
181 182 1.134220 GGACACCATCGCCATAAAGGA 60.134 52.381 0.00 0.00 41.22 3.36
182 183 2.487265 GGACACCATCGCCATAAAGGAT 60.487 50.000 0.00 0.00 41.22 3.24
183 184 3.214328 GACACCATCGCCATAAAGGATT 58.786 45.455 0.00 0.00 41.22 3.01
184 185 3.631250 ACACCATCGCCATAAAGGATTT 58.369 40.909 0.00 0.00 43.42 2.17
185 186 4.023291 ACACCATCGCCATAAAGGATTTT 58.977 39.130 0.00 0.00 40.09 1.82
186 187 5.197451 ACACCATCGCCATAAAGGATTTTA 58.803 37.500 0.00 0.00 40.09 1.52
187 188 5.299279 ACACCATCGCCATAAAGGATTTTAG 59.701 40.000 0.00 0.00 40.09 1.85
188 189 5.530915 CACCATCGCCATAAAGGATTTTAGA 59.469 40.000 0.00 0.00 40.09 2.10
189 190 5.765182 ACCATCGCCATAAAGGATTTTAGAG 59.235 40.000 0.00 0.00 40.09 2.43
190 191 5.765182 CCATCGCCATAAAGGATTTTAGAGT 59.235 40.000 0.00 0.00 40.09 3.24
191 192 6.073003 CCATCGCCATAAAGGATTTTAGAGTC 60.073 42.308 0.00 0.00 40.09 3.36
192 193 5.047847 TCGCCATAAAGGATTTTAGAGTCG 58.952 41.667 0.00 0.00 40.09 4.18
193 194 5.047847 CGCCATAAAGGATTTTAGAGTCGA 58.952 41.667 0.00 0.00 40.09 4.20
194 195 5.696724 CGCCATAAAGGATTTTAGAGTCGAT 59.303 40.000 0.00 0.00 40.09 3.59
195 196 6.346919 CGCCATAAAGGATTTTAGAGTCGATG 60.347 42.308 0.00 0.00 40.09 3.84
196 197 6.706270 GCCATAAAGGATTTTAGAGTCGATGA 59.294 38.462 0.00 0.00 40.09 2.92
197 198 7.389053 GCCATAAAGGATTTTAGAGTCGATGAT 59.611 37.037 0.00 0.00 40.09 2.45
198 199 9.277783 CCATAAAGGATTTTAGAGTCGATGATT 57.722 33.333 0.00 0.00 40.09 2.57
201 202 8.894768 AAAGGATTTTAGAGTCGATGATTAGG 57.105 34.615 0.00 0.00 31.62 2.69
202 203 6.459923 AGGATTTTAGAGTCGATGATTAGGC 58.540 40.000 0.00 0.00 0.00 3.93
203 204 6.268847 AGGATTTTAGAGTCGATGATTAGGCT 59.731 38.462 0.00 0.00 0.00 4.58
204 205 6.931840 GGATTTTAGAGTCGATGATTAGGCTT 59.068 38.462 0.00 0.00 0.00 4.35
205 206 7.095439 GGATTTTAGAGTCGATGATTAGGCTTG 60.095 40.741 0.00 0.00 0.00 4.01
206 207 5.854010 TTAGAGTCGATGATTAGGCTTGT 57.146 39.130 0.00 0.00 0.00 3.16
207 208 4.744795 AGAGTCGATGATTAGGCTTGTT 57.255 40.909 0.00 0.00 0.00 2.83
208 209 4.437239 AGAGTCGATGATTAGGCTTGTTG 58.563 43.478 0.00 0.00 0.00 3.33
209 210 2.939103 AGTCGATGATTAGGCTTGTTGC 59.061 45.455 0.00 0.00 41.94 4.17
210 211 2.677836 GTCGATGATTAGGCTTGTTGCA 59.322 45.455 0.00 0.00 45.15 4.08
211 212 3.126858 GTCGATGATTAGGCTTGTTGCAA 59.873 43.478 0.00 0.00 45.15 4.08
212 213 3.374988 TCGATGATTAGGCTTGTTGCAAG 59.625 43.478 0.00 4.65 45.15 4.01
213 214 3.442100 GATGATTAGGCTTGTTGCAAGC 58.558 45.455 21.49 21.49 45.15 4.01
214 215 2.237643 TGATTAGGCTTGTTGCAAGCA 58.762 42.857 27.79 13.46 44.71 3.91
215 216 2.229543 TGATTAGGCTTGTTGCAAGCAG 59.770 45.455 27.79 5.89 44.71 4.24
216 217 0.314935 TTAGGCTTGTTGCAAGCAGC 59.685 50.000 27.79 17.90 44.71 5.25
225 226 2.654877 GCAAGCAGCAAGGCACAT 59.345 55.556 0.00 0.00 44.79 3.21
226 227 1.736645 GCAAGCAGCAAGGCACATG 60.737 57.895 0.00 0.00 44.79 3.21
227 228 1.663739 CAAGCAGCAAGGCACATGT 59.336 52.632 0.00 0.00 35.83 3.21
228 229 0.388134 CAAGCAGCAAGGCACATGTC 60.388 55.000 0.00 0.00 35.83 3.06
229 230 0.824595 AAGCAGCAAGGCACATGTCA 60.825 50.000 0.00 0.00 35.83 3.58
230 231 1.080974 GCAGCAAGGCACATGTCAC 60.081 57.895 0.00 0.00 0.00 3.67
231 232 1.521450 GCAGCAAGGCACATGTCACT 61.521 55.000 0.00 0.00 0.00 3.41
232 233 0.240145 CAGCAAGGCACATGTCACTG 59.760 55.000 0.00 0.00 0.00 3.66
233 234 0.179009 AGCAAGGCACATGTCACTGT 60.179 50.000 0.00 0.00 0.00 3.55
235 236 0.594602 CAAGGCACATGTCACTGTGG 59.405 55.000 8.11 0.00 45.34 4.17
237 238 3.748623 GCACATGTCACTGTGGCA 58.251 55.556 18.33 18.33 45.34 4.92
238 239 1.283793 GCACATGTCACTGTGGCAC 59.716 57.895 18.40 11.55 45.34 5.01
239 240 1.570967 CACATGTCACTGTGGCACG 59.429 57.895 18.40 12.61 42.26 5.34
240 241 2.253758 ACATGTCACTGTGGCACGC 61.254 57.895 18.40 1.36 33.31 5.34
241 242 3.043713 ATGTCACTGTGGCACGCG 61.044 61.111 18.40 3.53 45.01 6.01
249 250 4.692475 GTGGCACGCGGGGTACTT 62.692 66.667 11.92 0.00 0.00 2.24
250 251 3.943691 TGGCACGCGGGGTACTTT 61.944 61.111 11.92 0.00 0.00 2.66
251 252 2.670592 GGCACGCGGGGTACTTTT 60.671 61.111 11.92 0.00 0.00 2.27
252 253 2.683859 GGCACGCGGGGTACTTTTC 61.684 63.158 11.92 0.00 0.00 2.29
253 254 2.683859 GCACGCGGGGTACTTTTCC 61.684 63.158 11.92 0.00 0.00 3.13
254 255 1.301874 CACGCGGGGTACTTTTCCA 60.302 57.895 12.47 0.00 0.00 3.53
255 256 0.675522 CACGCGGGGTACTTTTCCAT 60.676 55.000 12.47 0.00 0.00 3.41
256 257 0.675522 ACGCGGGGTACTTTTCCATG 60.676 55.000 12.47 0.00 0.00 3.66
257 258 0.675522 CGCGGGGTACTTTTCCATGT 60.676 55.000 0.00 0.00 0.00 3.21
258 259 1.541379 GCGGGGTACTTTTCCATGTT 58.459 50.000 0.00 0.00 0.00 2.71
259 260 2.713877 GCGGGGTACTTTTCCATGTTA 58.286 47.619 0.00 0.00 0.00 2.41
260 261 3.083293 GCGGGGTACTTTTCCATGTTAA 58.917 45.455 0.00 0.00 0.00 2.01
261 262 3.119743 GCGGGGTACTTTTCCATGTTAAC 60.120 47.826 0.00 0.00 0.00 2.01
262 263 3.441222 CGGGGTACTTTTCCATGTTAACC 59.559 47.826 2.48 0.00 0.00 2.85
263 264 4.669700 GGGGTACTTTTCCATGTTAACCT 58.330 43.478 2.48 0.00 0.00 3.50
264 265 5.571251 CGGGGTACTTTTCCATGTTAACCTA 60.571 44.000 2.48 0.00 0.00 3.08
265 266 5.884232 GGGGTACTTTTCCATGTTAACCTAG 59.116 44.000 2.48 0.00 0.00 3.02
266 267 6.479006 GGGTACTTTTCCATGTTAACCTAGT 58.521 40.000 2.48 0.00 0.00 2.57
267 268 6.596888 GGGTACTTTTCCATGTTAACCTAGTC 59.403 42.308 2.48 0.00 0.00 2.59
268 269 6.596888 GGTACTTTTCCATGTTAACCTAGTCC 59.403 42.308 2.48 0.00 0.00 3.85
269 270 5.567430 ACTTTTCCATGTTAACCTAGTCCC 58.433 41.667 2.48 0.00 0.00 4.46
270 271 3.899052 TTCCATGTTAACCTAGTCCCG 57.101 47.619 2.48 0.00 0.00 5.14
271 272 2.112998 TCCATGTTAACCTAGTCCCGG 58.887 52.381 2.48 0.00 0.00 5.73
272 273 2.112998 CCATGTTAACCTAGTCCCGGA 58.887 52.381 0.73 0.00 0.00 5.14
273 274 2.704065 CCATGTTAACCTAGTCCCGGAT 59.296 50.000 0.73 0.00 0.00 4.18
274 275 3.244112 CCATGTTAACCTAGTCCCGGATC 60.244 52.174 0.73 0.00 0.00 3.36
275 276 3.393426 TGTTAACCTAGTCCCGGATCT 57.607 47.619 0.73 2.89 0.00 2.75
276 277 3.028850 TGTTAACCTAGTCCCGGATCTG 58.971 50.000 0.73 0.00 0.00 2.90
277 278 1.700955 TAACCTAGTCCCGGATCTGC 58.299 55.000 0.73 0.00 0.00 4.26
278 279 1.049289 AACCTAGTCCCGGATCTGCC 61.049 60.000 0.73 0.00 0.00 4.85
287 288 4.683432 GGATCTGCCGCATCCTAC 57.317 61.111 5.85 0.00 37.44 3.18
288 289 2.053618 GGATCTGCCGCATCCTACT 58.946 57.895 5.85 0.00 37.44 2.57
289 290 1.257743 GGATCTGCCGCATCCTACTA 58.742 55.000 5.85 0.00 37.44 1.82
290 291 1.618837 GGATCTGCCGCATCCTACTAA 59.381 52.381 5.85 0.00 37.44 2.24
291 292 2.610727 GGATCTGCCGCATCCTACTAAC 60.611 54.545 5.85 0.00 37.44 2.34
292 293 0.384309 TCTGCCGCATCCTACTAACG 59.616 55.000 0.00 0.00 0.00 3.18
293 294 1.215655 CTGCCGCATCCTACTAACGC 61.216 60.000 0.00 0.00 0.00 4.84
294 295 1.227147 GCCGCATCCTACTAACGCA 60.227 57.895 0.00 0.00 0.00 5.24
295 296 1.215655 GCCGCATCCTACTAACGCAG 61.216 60.000 0.00 0.00 0.00 5.18
297 298 1.478137 CGCATCCTACTAACGCAGTC 58.522 55.000 0.00 0.00 45.00 3.51
298 299 1.478137 GCATCCTACTAACGCAGTCG 58.522 55.000 0.00 0.00 45.00 4.18
299 300 1.864435 GCATCCTACTAACGCAGTCGG 60.864 57.143 2.77 2.77 45.00 4.79
300 301 1.030457 ATCCTACTAACGCAGTCGGG 58.970 55.000 8.05 6.11 45.00 5.14
301 302 0.035152 TCCTACTAACGCAGTCGGGA 60.035 55.000 8.05 7.88 45.00 5.14
302 303 0.813184 CCTACTAACGCAGTCGGGAA 59.187 55.000 1.49 0.00 45.00 3.97
303 304 1.202268 CCTACTAACGCAGTCGGGAAG 60.202 57.143 1.49 0.00 45.00 3.46
304 305 1.741706 CTACTAACGCAGTCGGGAAGA 59.258 52.381 0.00 0.00 45.00 2.87
305 306 0.963962 ACTAACGCAGTCGGGAAGAA 59.036 50.000 0.00 0.00 45.00 2.52
306 307 1.336609 ACTAACGCAGTCGGGAAGAAC 60.337 52.381 0.00 0.00 45.00 3.01
307 308 0.387622 TAACGCAGTCGGGAAGAACG 60.388 55.000 0.00 0.00 45.00 3.95
308 309 3.479269 CGCAGTCGGGAAGAACGC 61.479 66.667 0.00 0.00 0.00 4.84
309 310 3.119096 GCAGTCGGGAAGAACGCC 61.119 66.667 0.00 0.00 0.00 5.68
310 311 2.342279 CAGTCGGGAAGAACGCCA 59.658 61.111 0.00 0.00 0.00 5.69
311 312 1.738099 CAGTCGGGAAGAACGCCAG 60.738 63.158 0.00 0.00 0.00 4.85
312 313 1.906824 AGTCGGGAAGAACGCCAGA 60.907 57.895 0.00 0.00 0.00 3.86
313 314 1.218316 GTCGGGAAGAACGCCAGAT 59.782 57.895 0.00 0.00 32.37 2.90
314 315 0.806492 GTCGGGAAGAACGCCAGATC 60.806 60.000 0.00 0.00 32.37 2.75
315 316 1.521681 CGGGAAGAACGCCAGATCC 60.522 63.158 0.00 0.00 0.00 3.36
330 331 2.933287 TCCGCCATGGACAGGGTT 60.933 61.111 18.40 0.00 43.74 4.11
353 354 4.192317 GTCGTGATTAGGAAGAAGCCAAT 58.808 43.478 0.00 0.00 0.00 3.16
372 373 5.331902 CCAATGCTACTTTATTTGACGTGG 58.668 41.667 0.00 0.00 0.00 4.94
376 377 3.435671 GCTACTTTATTTGACGTGGCACT 59.564 43.478 16.72 2.45 34.54 4.40
377 378 3.896648 ACTTTATTTGACGTGGCACTG 57.103 42.857 16.72 11.66 0.00 3.66
381 382 1.967319 ATTTGACGTGGCACTGTTCT 58.033 45.000 16.72 0.00 0.00 3.01
388 389 0.326264 GTGGCACTGTTCTCATCCCT 59.674 55.000 11.13 0.00 0.00 4.20
390 391 0.908198 GGCACTGTTCTCATCCCTCT 59.092 55.000 0.00 0.00 0.00 3.69
392 393 2.011046 GCACTGTTCTCATCCCTCTGC 61.011 57.143 0.00 0.00 0.00 4.26
393 394 0.534412 ACTGTTCTCATCCCTCTGCG 59.466 55.000 0.00 0.00 0.00 5.18
394 395 0.809241 CTGTTCTCATCCCTCTGCGC 60.809 60.000 0.00 0.00 0.00 6.09
395 396 1.522580 GTTCTCATCCCTCTGCGCC 60.523 63.158 4.18 0.00 0.00 6.53
396 397 1.989508 TTCTCATCCCTCTGCGCCA 60.990 57.895 4.18 0.00 0.00 5.69
399 400 3.790437 CATCCCTCTGCGCCACCT 61.790 66.667 4.18 0.00 0.00 4.00
413 414 1.349357 GCCACCTCCTCTTGAAAGACT 59.651 52.381 0.00 0.00 0.00 3.24
422 423 4.283722 TCCTCTTGAAAGACTAACTCCACC 59.716 45.833 0.00 0.00 0.00 4.61
426 427 2.696707 TGAAAGACTAACTCCACCGTGT 59.303 45.455 0.00 0.00 0.00 4.49
455 457 1.630878 ACATGAGACAAAGAGGACCCC 59.369 52.381 0.00 0.00 0.00 4.95
456 458 1.912043 CATGAGACAAAGAGGACCCCT 59.088 52.381 0.00 0.00 36.03 4.79
457 459 2.118403 TGAGACAAAGAGGACCCCTT 57.882 50.000 0.00 0.00 31.76 3.95
458 460 1.978580 TGAGACAAAGAGGACCCCTTC 59.021 52.381 0.00 0.00 31.76 3.46
459 461 1.279558 GAGACAAAGAGGACCCCTTCC 59.720 57.143 0.00 0.00 46.33 3.46
477 479 2.041301 CCTCCCCCACCCGTCATA 60.041 66.667 0.00 0.00 0.00 2.15
484 486 1.622607 CCCACCCGTCATAGGAGCAA 61.623 60.000 0.00 0.00 0.00 3.91
499 501 1.303155 GCAACAAGCAGAGGAGGCT 60.303 57.895 0.00 0.00 45.15 4.58
501 503 0.035881 CAACAAGCAGAGGAGGCTGA 59.964 55.000 0.00 0.00 41.66 4.26
507 509 0.250901 GCAGAGGAGGCTGAAAACCA 60.251 55.000 0.00 0.00 38.14 3.67
512 514 0.035739 GGAGGCTGAAAACCACGGTA 59.964 55.000 0.00 0.00 0.00 4.02
515 517 0.725117 GGCTGAAAACCACGGTATCG 59.275 55.000 0.00 0.00 43.02 2.92
518 520 0.035036 TGAAAACCACGGTATCGCCA 59.965 50.000 0.00 0.00 40.63 5.69
541 543 0.250727 TTTGCCAAGAGGAGGAACCG 60.251 55.000 0.00 0.00 44.74 4.44
544 546 1.215647 CCAAGAGGAGGAACCGTCG 59.784 63.158 0.00 0.00 44.74 5.12
547 549 3.069318 GAGGAGGAACCGTCGCCT 61.069 66.667 0.00 0.00 44.74 5.52
549 551 1.726533 GAGGAGGAACCGTCGCCTAG 61.727 65.000 0.00 0.00 44.74 3.02
550 552 1.751927 GGAGGAACCGTCGCCTAGA 60.752 63.158 0.00 0.00 33.84 2.43
553 555 0.745468 AGGAACCGTCGCCTAGAATC 59.255 55.000 0.00 0.00 31.31 2.52
555 557 1.207377 GAACCGTCGCCTAGAATCGC 61.207 60.000 0.00 0.00 0.00 4.58
557 559 2.411701 CGTCGCCTAGAATCGCCA 59.588 61.111 0.00 0.00 0.00 5.69
563 565 1.264288 CGCCTAGAATCGCCATTTTCC 59.736 52.381 0.00 0.00 0.00 3.13
575 577 1.213926 CCATTTTCCTGGAGAGGGAGG 59.786 57.143 6.94 0.00 40.25 4.30
579 581 1.156322 TTCCTGGAGAGGGAGGGAGT 61.156 60.000 0.00 0.00 40.25 3.85
581 583 1.700368 CTGGAGAGGGAGGGAGTGA 59.300 63.158 0.00 0.00 0.00 3.41
585 587 2.524440 TGGAGAGGGAGGGAGTGAATAT 59.476 50.000 0.00 0.00 0.00 1.28
588 590 1.349357 GAGGGAGGGAGTGAATATGGC 59.651 57.143 0.00 0.00 0.00 4.40
590 592 2.182312 AGGGAGGGAGTGAATATGGCTA 59.818 50.000 0.00 0.00 0.00 3.93
608 610 4.061596 GGCTATTGGCATCTGAGTTAGTC 58.938 47.826 0.00 0.00 44.01 2.59
616 618 4.740695 GGCATCTGAGTTAGTCGTTCATAC 59.259 45.833 0.00 0.00 0.00 2.39
637 639 3.261580 CGATTCTGATGTAGTGCAACCA 58.738 45.455 0.00 0.00 37.80 3.67
646 648 5.982516 TGATGTAGTGCAACCAAACAATTTC 59.017 36.000 0.00 0.00 37.80 2.17
648 650 3.902881 AGTGCAACCAAACAATTTCCA 57.097 38.095 0.00 0.00 37.80 3.53
651 653 4.575645 AGTGCAACCAAACAATTTCCATTG 59.424 37.500 0.00 0.00 41.45 2.82
663 665 6.938507 ACAATTTCCATTGCACACATATTCT 58.061 32.000 0.00 0.00 43.39 2.40
671 673 6.869913 CCATTGCACACATATTCTTGAGTTTT 59.130 34.615 0.00 0.00 0.00 2.43
672 674 7.148705 CCATTGCACACATATTCTTGAGTTTTG 60.149 37.037 0.00 0.00 0.00 2.44
691 693 9.788960 GAGTTTTGGTTTCATAATGTAGGATTC 57.211 33.333 0.00 0.00 0.00 2.52
716 718 9.919416 TCATTATACCTTGAAATTTGAGATCCA 57.081 29.630 0.00 0.00 0.00 3.41
795 832 9.927668 AAGATTTTTGTTTAGAGAGAGAGAGAG 57.072 33.333 0.00 0.00 0.00 3.20
813 850 2.021457 GAGAGAGAGGGGAGAAACGAG 58.979 57.143 0.00 0.00 0.00 4.18
829 866 1.002366 CGAGAGTGAAATGGGCTTCG 58.998 55.000 0.00 0.00 0.00 3.79
830 867 0.729690 GAGAGTGAAATGGGCTTCGC 59.270 55.000 0.00 0.00 36.31 4.70
851 894 3.421844 CCAGTGGGCTTAGCTTAACTTT 58.578 45.455 3.59 0.00 0.00 2.66
870 913 5.403246 ACTTTCACTCGCTCATTAGTGTAG 58.597 41.667 0.00 0.00 42.96 2.74
872 915 2.099263 TCACTCGCTCATTAGTGTAGCC 59.901 50.000 0.00 0.00 42.96 3.93
874 917 2.359531 ACTCGCTCATTAGTGTAGCCTC 59.640 50.000 0.00 0.00 34.68 4.70
875 918 1.681793 TCGCTCATTAGTGTAGCCTCC 59.318 52.381 0.00 0.00 34.68 4.30
929 972 2.184579 GTTTCTCCCTCGGCCGAG 59.815 66.667 41.90 41.90 41.63 4.63
1672 1718 2.997315 TCCTCTCACCGCCTGTGG 60.997 66.667 1.57 0.00 45.48 4.17
1708 1754 1.527433 GGTCAAGAAGGTGGCCAAGC 61.527 60.000 7.24 0.78 43.22 4.01
1960 2033 7.939784 GGTACTACCTCATTTCCATTTCTTT 57.060 36.000 0.00 0.00 34.73 2.52
2075 2201 1.672881 CCTCCGGTTTGCAAGATCATC 59.327 52.381 0.00 0.00 0.00 2.92
2144 2270 4.213482 CGCCTAAAAGCCAAGGTATGTATC 59.787 45.833 0.00 0.00 35.16 2.24
2147 2273 2.256117 AAGCCAAGGTATGTATCCGC 57.744 50.000 0.00 0.00 0.00 5.54
2149 2275 0.032952 GCCAAGGTATGTATCCGCGA 59.967 55.000 8.23 0.00 0.00 5.87
2174 2300 4.494091 AATCATCCTCGGTGAATCTGTT 57.506 40.909 0.00 0.00 0.00 3.16
2212 2344 4.320788 GGAGTTGAGTTGAAATGCTTGGAG 60.321 45.833 0.00 0.00 0.00 3.86
2262 2394 7.858382 CAGATCGTAGGATTGTGAACTAACTAG 59.142 40.741 0.00 0.00 31.51 2.57
2263 2395 7.556996 AGATCGTAGGATTGTGAACTAACTAGT 59.443 37.037 0.00 0.00 33.27 2.57
2264 2396 6.849502 TCGTAGGATTGTGAACTAACTAGTG 58.150 40.000 0.00 0.00 36.50 2.74
2269 2401 6.042781 AGGATTGTGAACTAACTAGTGGTTCA 59.957 38.462 26.82 26.82 44.35 3.18
2273 2405 5.995282 TGTGAACTAACTAGTGGTTCATTGG 59.005 40.000 30.10 8.52 46.72 3.16
2276 2408 5.161943 ACTAACTAGTGGTTCATTGGTCC 57.838 43.478 0.00 0.00 39.17 4.46
2278 2410 1.975680 ACTAGTGGTTCATTGGTCCGT 59.024 47.619 0.00 0.00 0.00 4.69
2280 2412 0.472471 AGTGGTTCATTGGTCCGTGT 59.528 50.000 0.00 0.00 0.00 4.49
2299 2431 5.451982 CCGTGTTAAGAAAACCGTTTGTTAC 59.548 40.000 0.00 0.00 33.52 2.50
2301 2433 6.022329 CGTGTTAAGAAAACCGTTTGTTACAC 60.022 38.462 0.00 7.42 33.52 2.90
2303 2435 7.007636 GTGTTAAGAAAACCGTTTGTTACACAG 59.992 37.037 15.70 0.00 36.26 3.66
2304 2436 4.023739 AGAAAACCGTTTGTTACACAGC 57.976 40.909 0.00 0.00 35.67 4.40
2305 2437 3.440872 AGAAAACCGTTTGTTACACAGCA 59.559 39.130 0.00 0.00 35.67 4.41
2306 2438 3.851976 AAACCGTTTGTTACACAGCAA 57.148 38.095 0.00 0.00 35.67 3.91
2307 2439 4.379339 AAACCGTTTGTTACACAGCAAT 57.621 36.364 0.00 0.00 35.67 3.56
2308 2440 4.379339 AACCGTTTGTTACACAGCAATT 57.621 36.364 0.00 0.00 34.69 2.32
2309 2441 5.502153 AACCGTTTGTTACACAGCAATTA 57.498 34.783 0.00 0.00 34.69 1.40
2310 2442 5.103290 ACCGTTTGTTACACAGCAATTAG 57.897 39.130 0.00 0.00 0.00 1.73
2311 2443 4.577283 ACCGTTTGTTACACAGCAATTAGT 59.423 37.500 0.00 0.00 0.00 2.24
2312 2444 5.144359 CCGTTTGTTACACAGCAATTAGTC 58.856 41.667 0.00 0.00 0.00 2.59
2313 2445 5.049680 CCGTTTGTTACACAGCAATTAGTCT 60.050 40.000 0.00 0.00 0.00 3.24
2314 2446 6.427150 CGTTTGTTACACAGCAATTAGTCTT 58.573 36.000 0.00 0.00 0.00 3.01
2315 2447 6.356977 CGTTTGTTACACAGCAATTAGTCTTG 59.643 38.462 0.00 0.00 0.00 3.02
2327 2459 5.412904 GCAATTAGTCTTGCCTACAGAAACT 59.587 40.000 0.00 0.00 44.56 2.66
2347 2479 4.062293 ACTATCGCTCACTCTAGTGCTAG 58.938 47.826 5.21 0.00 45.25 3.42
2360 2492 7.700234 CACTCTAGTGCTAGTATCTTTGTCTTG 59.300 40.741 6.18 0.00 39.39 3.02
2435 3397 3.018423 ACTGAGCAAGGGAAAACAGTT 57.982 42.857 0.00 0.00 35.52 3.16
2524 3489 3.614092 TGGGCTTTGATCTCACATCTTC 58.386 45.455 0.00 0.00 0.00 2.87
2536 3501 7.991460 TGATCTCACATCTTCATGAAAATAGCT 59.009 33.333 9.88 0.00 33.72 3.32
2568 3533 7.475015 TCTCCTTATTTTGCATCTGATTTTCG 58.525 34.615 0.00 0.00 0.00 3.46
2757 3723 6.387465 CCTCTGTCTCAAAATGTAAGACGTA 58.613 40.000 0.00 0.00 41.84 3.57
3003 4321 2.057137 TCAATATGGAGGCCTTGTGC 57.943 50.000 6.77 0.00 40.16 4.57
3128 4446 1.929836 GAAGGTAAGAGCGCTCACATG 59.070 52.381 36.87 0.00 0.00 3.21
3187 4505 1.739667 GGTGACAACCCAAGCAACC 59.260 57.895 0.00 0.00 41.04 3.77
3515 5075 6.386927 TCTGGGAATAAACCTGTCTGTCATAT 59.613 38.462 0.00 0.00 0.00 1.78
3516 5076 7.567250 TCTGGGAATAAACCTGTCTGTCATATA 59.433 37.037 0.00 0.00 0.00 0.86
3525 5085 8.723942 AACCTGTCTGTCATATATCTTGTTTC 57.276 34.615 0.00 0.00 0.00 2.78
3534 5094 9.770097 TGTCATATATCTTGTTTCTGGAGAATC 57.230 33.333 0.00 0.00 33.54 2.52
3589 5149 7.148755 CCTGAAGCAATAAAATTTTCTGTTCGG 60.149 37.037 6.72 14.37 0.00 4.30
3593 5153 6.863126 AGCAATAAAATTTTCTGTTCGGTCTG 59.137 34.615 6.72 0.00 0.00 3.51
3668 5228 6.949352 AGCAATAATTACCTGATGGACTTG 57.051 37.500 1.42 0.00 37.04 3.16
3750 5328 6.805713 ACATCTTGAACTGGATTTTCGTTTT 58.194 32.000 0.00 0.00 0.00 2.43
3806 5388 6.016610 TGGATCTGTTGATGTTCATATGCATG 60.017 38.462 10.16 0.00 32.19 4.06
3971 5562 5.252586 ACTCCCTTCTGTACTGTACTGTA 57.747 43.478 17.98 8.40 0.00 2.74
3973 5564 5.222089 ACTCCCTTCTGTACTGTACTGTACT 60.222 44.000 30.96 13.99 42.22 2.73
3974 5565 5.008331 TCCCTTCTGTACTGTACTGTACTG 58.992 45.833 30.96 29.74 42.22 2.74
3975 5566 4.765856 CCCTTCTGTACTGTACTGTACTGT 59.234 45.833 30.96 26.40 42.22 3.55
3976 5567 5.243283 CCCTTCTGTACTGTACTGTACTGTT 59.757 44.000 30.96 15.98 42.22 3.16
3978 5569 5.954296 TCTGTACTGTACTGTACTGTTCC 57.046 43.478 30.96 20.46 42.22 3.62
3979 5570 4.763793 TCTGTACTGTACTGTACTGTTCCC 59.236 45.833 30.96 18.66 42.22 3.97
3980 5571 3.503363 TGTACTGTACTGTACTGTTCCCG 59.497 47.826 30.96 8.43 42.22 5.14
3981 5572 1.891150 ACTGTACTGTACTGTTCCCGG 59.109 52.381 20.48 0.00 37.54 5.73
3985 5576 3.324108 TGTACTGTTCCCGGCCCC 61.324 66.667 0.00 0.00 0.00 5.80
4210 5818 0.386478 GAAGACGCAAGCAAAGGCAG 60.386 55.000 0.00 0.00 44.61 4.85
4305 5913 3.190118 GGAAGCTGAGGATGTTGACAAAG 59.810 47.826 0.00 0.00 0.00 2.77
4399 6007 1.798813 CGGTAACTTGGACAAGAGCAC 59.201 52.381 18.15 11.45 40.79 4.40
4541 6152 1.293179 CATGACACCCGAGCAGACA 59.707 57.895 0.00 0.00 0.00 3.41
4703 6332 1.303317 CAACCAAGGAAGACCCCCG 60.303 63.158 0.00 0.00 36.73 5.73
4746 6381 4.235360 CGAGAACAACGAAGACAGGTATT 58.765 43.478 0.00 0.00 0.00 1.89
4860 6495 1.107945 GAGGGGAAACGAGAGAGGAG 58.892 60.000 0.00 0.00 0.00 3.69
4990 6641 3.437795 CAGCAGCCGAAAGCCAGG 61.438 66.667 0.00 0.00 45.47 4.45
5081 6738 3.747976 CCGGCCAAAAGCTTCGGG 61.748 66.667 14.11 12.61 41.17 5.14
5210 6873 9.785982 AAGAGAGGAAATAACTAATATTCTGCC 57.214 33.333 0.00 0.00 32.96 4.85
5248 6911 0.727398 GCGGTGGCTGTCTATTTGAC 59.273 55.000 0.00 0.00 45.54 3.18
5258 6921 1.067354 GTCTATTTGACACGGGACGGT 60.067 52.381 0.00 0.00 46.86 4.83
5278 6981 3.255642 GGTTGGAAATTGACTAGCAAGCA 59.744 43.478 0.00 0.00 40.42 3.91
5313 7064 9.771915 CCATTTTGTTGTTATTATTCATTTGGC 57.228 29.630 0.00 0.00 0.00 4.52
5352 7104 8.756486 TGATGAACATCATTATTGGTTGATCT 57.244 30.769 12.61 0.00 42.42 2.75
5358 7110 9.754382 AACATCATTATTGGTTGATCTTTATGC 57.246 29.630 0.00 0.00 30.24 3.14
5447 7211 7.391554 AGCAATACTTGTTGAATATGTCTGTGT 59.608 33.333 0.00 0.00 0.00 3.72
5451 7215 7.333528 ACTTGTTGAATATGTCTGTGTTTGT 57.666 32.000 0.00 0.00 0.00 2.83
5452 7216 7.195646 ACTTGTTGAATATGTCTGTGTTTGTG 58.804 34.615 0.00 0.00 0.00 3.33
5453 7217 6.691754 TGTTGAATATGTCTGTGTTTGTGT 57.308 33.333 0.00 0.00 0.00 3.72
5454 7218 6.724263 TGTTGAATATGTCTGTGTTTGTGTC 58.276 36.000 0.00 0.00 0.00 3.67
5455 7219 6.317391 TGTTGAATATGTCTGTGTTTGTGTCA 59.683 34.615 0.00 0.00 0.00 3.58
5456 7220 7.013178 TGTTGAATATGTCTGTGTTTGTGTCAT 59.987 33.333 0.00 0.00 0.00 3.06
5457 7221 6.901265 TGAATATGTCTGTGTTTGTGTCATG 58.099 36.000 0.00 0.00 0.00 3.07
5458 7222 6.486320 TGAATATGTCTGTGTTTGTGTCATGT 59.514 34.615 0.00 0.00 0.00 3.21
5459 7223 4.556942 ATGTCTGTGTTTGTGTCATGTG 57.443 40.909 0.00 0.00 0.00 3.21
5460 7224 2.097304 TGTCTGTGTTTGTGTCATGTGC 59.903 45.455 0.00 0.00 0.00 4.57
5461 7225 2.355756 GTCTGTGTTTGTGTCATGTGCT 59.644 45.455 0.00 0.00 0.00 4.40
5462 7226 3.559655 GTCTGTGTTTGTGTCATGTGCTA 59.440 43.478 0.00 0.00 0.00 3.49
5463 7227 4.035091 GTCTGTGTTTGTGTCATGTGCTAA 59.965 41.667 0.00 0.00 0.00 3.09
5464 7228 4.035091 TCTGTGTTTGTGTCATGTGCTAAC 59.965 41.667 0.00 0.00 0.00 2.34
5465 7229 3.944650 TGTGTTTGTGTCATGTGCTAACT 59.055 39.130 0.00 0.00 0.00 2.24
5466 7230 4.201901 TGTGTTTGTGTCATGTGCTAACTG 60.202 41.667 0.00 0.00 0.00 3.16
5467 7231 3.314913 TGTTTGTGTCATGTGCTAACTGG 59.685 43.478 0.00 0.00 0.00 4.00
5468 7232 2.928801 TGTGTCATGTGCTAACTGGT 57.071 45.000 0.00 0.00 0.00 4.00
5469 7233 3.207265 TGTGTCATGTGCTAACTGGTT 57.793 42.857 0.00 0.00 0.00 3.67
5470 7234 3.550820 TGTGTCATGTGCTAACTGGTTT 58.449 40.909 0.00 0.00 0.00 3.27
5471 7235 3.951037 TGTGTCATGTGCTAACTGGTTTT 59.049 39.130 0.00 0.00 0.00 2.43
5472 7236 4.202000 TGTGTCATGTGCTAACTGGTTTTG 60.202 41.667 0.00 0.00 0.00 2.44
5483 7247 5.238650 GCTAACTGGTTTTGTGTCATGTACT 59.761 40.000 0.00 0.00 0.00 2.73
5550 7314 4.532126 TCTTTGTCTTCCCTAAGAGCATGA 59.468 41.667 0.00 0.00 42.40 3.07
5582 7877 6.743575 ACAATCAATAATCGGCTATAAGGC 57.256 37.500 0.00 0.00 37.44 4.35
5628 7923 7.226720 CCAATCTAATAGTCGGCTTGTACAATT 59.773 37.037 9.13 0.43 0.00 2.32
5695 7990 6.260936 CCTTACAATCTCACAAAGTGTCTTGT 59.739 38.462 14.12 14.12 40.17 3.16
5711 8208 2.099263 TCTTGTGTCTCGTGCTATAGCC 59.901 50.000 21.84 12.00 41.18 3.93
5758 8255 4.540099 TCCTTCTCTCTCCTCTTCTCTCTT 59.460 45.833 0.00 0.00 0.00 2.85
5770 8267 7.978925 TCCTCTTCTCTCTTTTCCAACTAAAT 58.021 34.615 0.00 0.00 0.00 1.40
5828 8331 4.575885 TGTCACCTTATTGTAACTGCTCC 58.424 43.478 0.00 0.00 0.00 4.70
5829 8332 4.286032 TGTCACCTTATTGTAACTGCTCCT 59.714 41.667 0.00 0.00 0.00 3.69
5830 8333 4.870991 GTCACCTTATTGTAACTGCTCCTC 59.129 45.833 0.00 0.00 0.00 3.71
5852 8384 0.642291 CTCTGAATGTGCGTGCTACG 59.358 55.000 4.61 4.61 45.88 3.51
5867 8399 4.201930 CGTGCTACGTCTTTTCTCCTAGAT 60.202 45.833 0.00 0.00 36.74 1.98
5879 8411 9.495572 TCTTTTCTCCTAGATTCTTTCTCAAAC 57.504 33.333 0.00 0.00 35.79 2.93
5886 8418 9.672673 TCCTAGATTCTTTCTCAAACCAATAAG 57.327 33.333 0.00 0.00 35.79 1.73
5896 8428 7.873719 TCTCAAACCAATAAGTCAAGTGAAA 57.126 32.000 0.00 0.00 0.00 2.69
5897 8429 8.463930 TCTCAAACCAATAAGTCAAGTGAAAT 57.536 30.769 0.00 0.00 0.00 2.17
5899 8431 9.533253 CTCAAACCAATAAGTCAAGTGAAATTT 57.467 29.630 0.00 0.00 0.00 1.82
5900 8432 9.528018 TCAAACCAATAAGTCAAGTGAAATTTC 57.472 29.630 11.41 11.41 0.00 2.17
5902 8434 9.883142 AAACCAATAAGTCAAGTGAAATTTCAA 57.117 25.926 22.07 4.31 39.21 2.69
5903 8435 9.533253 AACCAATAAGTCAAGTGAAATTTCAAG 57.467 29.630 22.07 14.67 39.21 3.02
5904 8436 8.912988 ACCAATAAGTCAAGTGAAATTTCAAGA 58.087 29.630 22.07 16.54 39.21 3.02
5969 8511 3.635591 CTGGGAGCATCAACCCTAAAAT 58.364 45.455 0.00 0.00 45.74 1.82
5973 8515 3.381590 GGAGCATCAACCCTAAAATCCAC 59.618 47.826 0.00 0.00 36.25 4.02
5983 8533 7.236019 TCAACCCTAAAATCCACTGTAACTAGA 59.764 37.037 0.00 0.00 0.00 2.43
5986 8536 9.448587 ACCCTAAAATCCACTGTAACTAGATAT 57.551 33.333 0.00 0.00 0.00 1.63
5997 8547 6.098266 ACTGTAACTAGATATGCCACATGTGA 59.902 38.462 27.46 8.67 0.00 3.58
5998 8548 7.066307 TGTAACTAGATATGCCACATGTGAT 57.934 36.000 27.46 15.57 0.00 3.06
6002 8552 8.978874 AACTAGATATGCCACATGTGATTTTA 57.021 30.769 27.46 12.72 0.00 1.52
6038 8588 7.716799 TGGTTGTATCTTGCCATTTAAGATT 57.283 32.000 5.66 0.00 40.92 2.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 2.941720 GCCCTCTCTGCATAGTTTTCAG 59.058 50.000 0.00 0.00 0.00 3.02
2 3 2.305635 TGCCCTCTCTGCATAGTTTTCA 59.694 45.455 0.00 0.00 32.85 2.69
3 4 2.680339 GTGCCCTCTCTGCATAGTTTTC 59.320 50.000 0.00 0.00 41.46 2.29
5 6 1.065126 GGTGCCCTCTCTGCATAGTTT 60.065 52.381 0.00 0.00 41.46 2.66
6 7 0.543749 GGTGCCCTCTCTGCATAGTT 59.456 55.000 0.00 0.00 41.46 2.24
7 8 0.618680 TGGTGCCCTCTCTGCATAGT 60.619 55.000 0.00 0.00 41.46 2.12
8 9 0.543277 TTGGTGCCCTCTCTGCATAG 59.457 55.000 0.00 0.00 41.46 2.23
10 11 1.203441 TCTTGGTGCCCTCTCTGCAT 61.203 55.000 0.00 0.00 41.46 3.96
11 12 1.842920 TCTTGGTGCCCTCTCTGCA 60.843 57.895 0.00 0.00 36.12 4.41
12 13 1.376553 GTCTTGGTGCCCTCTCTGC 60.377 63.158 0.00 0.00 0.00 4.26
13 14 0.617413 ATGTCTTGGTGCCCTCTCTG 59.383 55.000 0.00 0.00 0.00 3.35
14 15 2.114616 CTATGTCTTGGTGCCCTCTCT 58.885 52.381 0.00 0.00 0.00 3.10
15 16 2.111384 TCTATGTCTTGGTGCCCTCTC 58.889 52.381 0.00 0.00 0.00 3.20
16 17 2.254152 TCTATGTCTTGGTGCCCTCT 57.746 50.000 0.00 0.00 0.00 3.69
17 18 3.350219 TTTCTATGTCTTGGTGCCCTC 57.650 47.619 0.00 0.00 0.00 4.30
18 19 3.806949 TTTTCTATGTCTTGGTGCCCT 57.193 42.857 0.00 0.00 0.00 5.19
36 37 5.650703 CCCCTATGGACGTTCTTGTATTTTT 59.349 40.000 0.00 0.00 35.39 1.94
37 38 5.190677 CCCCTATGGACGTTCTTGTATTTT 58.809 41.667 0.00 0.00 35.39 1.82
38 39 4.226620 ACCCCTATGGACGTTCTTGTATTT 59.773 41.667 0.00 0.00 38.00 1.40
39 40 3.778629 ACCCCTATGGACGTTCTTGTATT 59.221 43.478 0.00 0.00 38.00 1.89
40 41 3.381335 ACCCCTATGGACGTTCTTGTAT 58.619 45.455 0.00 0.00 38.00 2.29
41 42 2.823959 ACCCCTATGGACGTTCTTGTA 58.176 47.619 0.00 0.00 38.00 2.41
42 43 1.652947 ACCCCTATGGACGTTCTTGT 58.347 50.000 0.00 0.00 38.00 3.16
43 44 2.629051 GAACCCCTATGGACGTTCTTG 58.371 52.381 0.00 0.00 38.00 3.02
44 45 1.558294 GGAACCCCTATGGACGTTCTT 59.442 52.381 0.00 0.00 34.47 2.52
45 46 1.201424 GGAACCCCTATGGACGTTCT 58.799 55.000 0.00 0.00 34.47 3.01
46 47 3.774616 GGAACCCCTATGGACGTTC 57.225 57.895 0.00 0.00 38.00 3.95
61 62 4.912485 TTTCGGTGCGTGCGGGAA 62.912 61.111 0.00 0.00 0.00 3.97
64 65 2.311701 TTAGTTTCGGTGCGTGCGG 61.312 57.895 0.00 0.00 0.00 5.69
65 66 1.154727 GTTAGTTTCGGTGCGTGCG 60.155 57.895 0.00 0.00 0.00 5.34
66 67 1.154727 CGTTAGTTTCGGTGCGTGC 60.155 57.895 0.00 0.00 0.00 5.34
67 68 1.065358 ATCGTTAGTTTCGGTGCGTG 58.935 50.000 0.00 0.00 0.00 5.34
68 69 1.458064 CAATCGTTAGTTTCGGTGCGT 59.542 47.619 0.00 0.00 0.00 5.24
69 70 1.458064 ACAATCGTTAGTTTCGGTGCG 59.542 47.619 0.00 0.00 0.00 5.34
70 71 3.483085 GCTACAATCGTTAGTTTCGGTGC 60.483 47.826 0.00 0.00 0.00 5.01
71 72 3.061697 GGCTACAATCGTTAGTTTCGGTG 59.938 47.826 0.00 0.00 0.00 4.94
72 73 3.256558 GGCTACAATCGTTAGTTTCGGT 58.743 45.455 0.00 0.00 0.00 4.69
73 74 3.255725 TGGCTACAATCGTTAGTTTCGG 58.744 45.455 0.00 0.00 0.00 4.30
74 75 4.914312 TTGGCTACAATCGTTAGTTTCG 57.086 40.909 0.00 0.00 0.00 3.46
75 76 6.238293 GGGTATTGGCTACAATCGTTAGTTTC 60.238 42.308 0.00 0.00 43.67 2.78
76 77 5.587443 GGGTATTGGCTACAATCGTTAGTTT 59.413 40.000 0.00 0.00 43.67 2.66
77 78 5.121105 GGGTATTGGCTACAATCGTTAGTT 58.879 41.667 0.00 0.00 43.67 2.24
78 79 4.162698 TGGGTATTGGCTACAATCGTTAGT 59.837 41.667 0.00 0.00 43.67 2.24
79 80 4.699637 TGGGTATTGGCTACAATCGTTAG 58.300 43.478 0.00 0.00 43.67 2.34
80 81 4.757019 TGGGTATTGGCTACAATCGTTA 57.243 40.909 0.00 0.00 43.67 3.18
81 82 3.637911 TGGGTATTGGCTACAATCGTT 57.362 42.857 0.00 0.00 43.67 3.85
82 83 3.637911 TTGGGTATTGGCTACAATCGT 57.362 42.857 0.00 0.00 43.67 3.73
83 84 3.304659 GCATTGGGTATTGGCTACAATCG 60.305 47.826 0.00 0.00 43.67 3.34
84 85 3.005791 GGCATTGGGTATTGGCTACAATC 59.994 47.826 0.00 0.00 43.67 2.67
86 87 2.383855 GGCATTGGGTATTGGCTACAA 58.616 47.619 0.00 0.00 41.59 2.41
87 88 1.748939 CGGCATTGGGTATTGGCTACA 60.749 52.381 0.00 0.00 36.35 2.74
88 89 0.951558 CGGCATTGGGTATTGGCTAC 59.048 55.000 0.00 0.00 36.35 3.58
89 90 0.179004 CCGGCATTGGGTATTGGCTA 60.179 55.000 0.00 0.00 36.35 3.93
90 91 1.455587 CCGGCATTGGGTATTGGCT 60.456 57.895 0.00 0.00 36.35 4.75
91 92 3.128375 CCGGCATTGGGTATTGGC 58.872 61.111 0.00 0.00 35.25 4.52
92 93 1.326213 TTGCCGGCATTGGGTATTGG 61.326 55.000 33.25 0.00 0.00 3.16
93 94 0.102844 CTTGCCGGCATTGGGTATTG 59.897 55.000 33.25 8.12 0.00 1.90
94 95 1.042559 CCTTGCCGGCATTGGGTATT 61.043 55.000 33.25 0.00 0.00 1.89
95 96 1.455587 CCTTGCCGGCATTGGGTAT 60.456 57.895 33.25 0.00 0.00 2.73
96 97 2.044451 CCTTGCCGGCATTGGGTA 60.044 61.111 33.25 13.76 0.00 3.69
108 109 3.423154 CTCCGGTGAACGCCTTGC 61.423 66.667 0.00 0.00 42.52 4.01
109 110 1.291877 CTTCTCCGGTGAACGCCTTG 61.292 60.000 14.78 1.03 42.52 3.61
110 111 1.004918 CTTCTCCGGTGAACGCCTT 60.005 57.895 14.78 0.00 42.52 4.35
111 112 1.878656 CTCTTCTCCGGTGAACGCCT 61.879 60.000 14.78 0.00 42.52 5.52
112 113 1.446272 CTCTTCTCCGGTGAACGCC 60.446 63.158 14.78 0.00 42.52 5.68
113 114 1.446272 CCTCTTCTCCGGTGAACGC 60.446 63.158 14.78 0.00 42.52 4.84
114 115 1.446272 GCCTCTTCTCCGGTGAACG 60.446 63.158 14.78 11.08 43.80 3.95
115 116 0.670854 GTGCCTCTTCTCCGGTGAAC 60.671 60.000 14.78 6.29 0.00 3.18
116 117 1.118965 TGTGCCTCTTCTCCGGTGAA 61.119 55.000 17.48 17.48 0.00 3.18
117 118 1.118965 TTGTGCCTCTTCTCCGGTGA 61.119 55.000 0.00 0.06 0.00 4.02
118 119 0.250295 TTTGTGCCTCTTCTCCGGTG 60.250 55.000 0.00 0.00 0.00 4.94
119 120 0.250338 GTTTGTGCCTCTTCTCCGGT 60.250 55.000 0.00 0.00 0.00 5.28
120 121 0.250295 TGTTTGTGCCTCTTCTCCGG 60.250 55.000 0.00 0.00 0.00 5.14
121 122 1.734465 GATGTTTGTGCCTCTTCTCCG 59.266 52.381 0.00 0.00 0.00 4.63
122 123 2.087646 GGATGTTTGTGCCTCTTCTCC 58.912 52.381 0.00 0.00 0.00 3.71
123 124 2.485814 GTGGATGTTTGTGCCTCTTCTC 59.514 50.000 0.00 0.00 0.00 2.87
124 125 2.107204 AGTGGATGTTTGTGCCTCTTCT 59.893 45.455 0.00 0.00 0.00 2.85
125 126 2.508526 AGTGGATGTTTGTGCCTCTTC 58.491 47.619 0.00 0.00 0.00 2.87
126 127 2.664402 AGTGGATGTTTGTGCCTCTT 57.336 45.000 0.00 0.00 0.00 2.85
127 128 3.521126 AGATAGTGGATGTTTGTGCCTCT 59.479 43.478 0.00 0.00 0.00 3.69
128 129 3.878778 AGATAGTGGATGTTTGTGCCTC 58.121 45.455 0.00 0.00 0.00 4.70
129 130 4.263462 TGAAGATAGTGGATGTTTGTGCCT 60.263 41.667 0.00 0.00 0.00 4.75
130 131 4.009675 TGAAGATAGTGGATGTTTGTGCC 58.990 43.478 0.00 0.00 0.00 5.01
131 132 4.937620 TCTGAAGATAGTGGATGTTTGTGC 59.062 41.667 0.00 0.00 0.00 4.57
132 133 6.259608 GGATCTGAAGATAGTGGATGTTTGTG 59.740 42.308 0.00 0.00 34.37 3.33
133 134 6.070021 TGGATCTGAAGATAGTGGATGTTTGT 60.070 38.462 0.00 0.00 34.37 2.83
134 135 6.351711 TGGATCTGAAGATAGTGGATGTTTG 58.648 40.000 0.00 0.00 34.37 2.93
135 136 6.566079 TGGATCTGAAGATAGTGGATGTTT 57.434 37.500 0.00 0.00 34.37 2.83
136 137 6.409005 CCTTGGATCTGAAGATAGTGGATGTT 60.409 42.308 6.60 0.00 34.37 2.71
137 138 5.071519 CCTTGGATCTGAAGATAGTGGATGT 59.928 44.000 6.60 0.00 34.37 3.06
138 139 5.512749 CCCTTGGATCTGAAGATAGTGGATG 60.513 48.000 6.60 0.00 34.37 3.51
139 140 4.596643 CCCTTGGATCTGAAGATAGTGGAT 59.403 45.833 6.60 0.00 34.37 3.41
140 141 3.969976 CCCTTGGATCTGAAGATAGTGGA 59.030 47.826 6.60 0.00 34.37 4.02
141 142 3.969976 TCCCTTGGATCTGAAGATAGTGG 59.030 47.826 6.60 0.00 34.37 4.00
142 143 4.406972 TGTCCCTTGGATCTGAAGATAGTG 59.593 45.833 6.60 0.00 34.37 2.74
143 144 4.407296 GTGTCCCTTGGATCTGAAGATAGT 59.593 45.833 6.60 0.00 34.37 2.12
144 145 4.202305 GGTGTCCCTTGGATCTGAAGATAG 60.202 50.000 6.60 0.00 34.37 2.08
145 146 3.711704 GGTGTCCCTTGGATCTGAAGATA 59.288 47.826 6.60 0.00 34.37 1.98
146 147 2.507471 GGTGTCCCTTGGATCTGAAGAT 59.493 50.000 6.60 0.00 37.51 2.40
147 148 1.909302 GGTGTCCCTTGGATCTGAAGA 59.091 52.381 6.60 0.00 32.73 2.87
148 149 1.630369 TGGTGTCCCTTGGATCTGAAG 59.370 52.381 0.00 0.00 32.73 3.02
149 150 1.741028 TGGTGTCCCTTGGATCTGAA 58.259 50.000 0.00 0.00 32.73 3.02
150 151 1.839994 GATGGTGTCCCTTGGATCTGA 59.160 52.381 0.00 0.00 32.73 3.27
151 152 1.473965 CGATGGTGTCCCTTGGATCTG 60.474 57.143 0.00 0.00 32.73 2.90
152 153 0.833287 CGATGGTGTCCCTTGGATCT 59.167 55.000 0.00 0.00 32.73 2.75
153 154 0.815615 GCGATGGTGTCCCTTGGATC 60.816 60.000 0.00 0.00 32.73 3.36
154 155 1.224592 GCGATGGTGTCCCTTGGAT 59.775 57.895 0.00 0.00 32.73 3.41
155 156 2.668632 GCGATGGTGTCCCTTGGA 59.331 61.111 0.00 0.00 0.00 3.53
156 157 2.438434 GGCGATGGTGTCCCTTGG 60.438 66.667 0.00 0.00 0.00 3.61
157 158 0.180171 TATGGCGATGGTGTCCCTTG 59.820 55.000 0.00 0.00 0.00 3.61
158 159 0.916086 TTATGGCGATGGTGTCCCTT 59.084 50.000 0.00 0.00 0.00 3.95
159 160 0.916086 TTTATGGCGATGGTGTCCCT 59.084 50.000 0.00 0.00 0.00 4.20
160 161 1.308998 CTTTATGGCGATGGTGTCCC 58.691 55.000 0.00 0.00 0.00 4.46
161 162 1.134220 TCCTTTATGGCGATGGTGTCC 60.134 52.381 0.00 0.00 35.26 4.02
162 163 2.325583 TCCTTTATGGCGATGGTGTC 57.674 50.000 0.00 0.00 35.26 3.67
163 164 3.297134 AATCCTTTATGGCGATGGTGT 57.703 42.857 0.00 0.00 35.26 4.16
164 165 4.654091 AAAATCCTTTATGGCGATGGTG 57.346 40.909 0.00 0.00 35.26 4.17
165 166 5.690865 TCTAAAATCCTTTATGGCGATGGT 58.309 37.500 0.00 0.00 35.26 3.55
166 167 5.765182 ACTCTAAAATCCTTTATGGCGATGG 59.235 40.000 0.00 0.00 35.26 3.51
167 168 6.346919 CGACTCTAAAATCCTTTATGGCGATG 60.347 42.308 0.00 0.00 35.58 3.84
168 169 5.696724 CGACTCTAAAATCCTTTATGGCGAT 59.303 40.000 0.00 0.00 35.58 4.58
169 170 5.047847 CGACTCTAAAATCCTTTATGGCGA 58.952 41.667 0.00 0.00 35.58 5.54
170 171 5.047847 TCGACTCTAAAATCCTTTATGGCG 58.952 41.667 0.00 0.00 35.22 5.69
171 172 6.706270 TCATCGACTCTAAAATCCTTTATGGC 59.294 38.462 0.00 0.00 35.26 4.40
172 173 8.839310 ATCATCGACTCTAAAATCCTTTATGG 57.161 34.615 0.00 0.00 37.10 2.74
175 176 9.982651 CCTAATCATCGACTCTAAAATCCTTTA 57.017 33.333 0.00 0.00 0.00 1.85
176 177 7.442666 GCCTAATCATCGACTCTAAAATCCTTT 59.557 37.037 0.00 0.00 0.00 3.11
177 178 6.931840 GCCTAATCATCGACTCTAAAATCCTT 59.068 38.462 0.00 0.00 0.00 3.36
178 179 6.268847 AGCCTAATCATCGACTCTAAAATCCT 59.731 38.462 0.00 0.00 0.00 3.24
179 180 6.459923 AGCCTAATCATCGACTCTAAAATCC 58.540 40.000 0.00 0.00 0.00 3.01
180 181 7.439655 ACAAGCCTAATCATCGACTCTAAAATC 59.560 37.037 0.00 0.00 0.00 2.17
181 182 7.275920 ACAAGCCTAATCATCGACTCTAAAAT 58.724 34.615 0.00 0.00 0.00 1.82
182 183 6.640518 ACAAGCCTAATCATCGACTCTAAAA 58.359 36.000 0.00 0.00 0.00 1.52
183 184 6.222038 ACAAGCCTAATCATCGACTCTAAA 57.778 37.500 0.00 0.00 0.00 1.85
184 185 5.854010 ACAAGCCTAATCATCGACTCTAA 57.146 39.130 0.00 0.00 0.00 2.10
185 186 5.592054 CAACAAGCCTAATCATCGACTCTA 58.408 41.667 0.00 0.00 0.00 2.43
186 187 4.437239 CAACAAGCCTAATCATCGACTCT 58.563 43.478 0.00 0.00 0.00 3.24
187 188 3.001736 GCAACAAGCCTAATCATCGACTC 59.998 47.826 0.00 0.00 37.23 3.36
188 189 2.939103 GCAACAAGCCTAATCATCGACT 59.061 45.455 0.00 0.00 37.23 4.18
189 190 2.677836 TGCAACAAGCCTAATCATCGAC 59.322 45.455 0.00 0.00 44.83 4.20
190 191 2.984562 TGCAACAAGCCTAATCATCGA 58.015 42.857 0.00 0.00 44.83 3.59
191 192 3.688272 CTTGCAACAAGCCTAATCATCG 58.312 45.455 0.00 0.00 44.83 3.84
192 193 3.119388 TGCTTGCAACAAGCCTAATCATC 60.119 43.478 24.95 0.51 44.83 2.92
193 194 2.827322 TGCTTGCAACAAGCCTAATCAT 59.173 40.909 24.95 0.00 44.83 2.45
194 195 2.229543 CTGCTTGCAACAAGCCTAATCA 59.770 45.455 24.95 8.34 44.83 2.57
195 196 2.872370 CTGCTTGCAACAAGCCTAATC 58.128 47.619 24.95 2.40 44.83 1.75
196 197 1.067354 GCTGCTTGCAACAAGCCTAAT 60.067 47.619 24.95 0.00 44.83 1.73
197 198 0.314935 GCTGCTTGCAACAAGCCTAA 59.685 50.000 24.95 9.60 44.83 2.69
198 199 1.959085 GCTGCTTGCAACAAGCCTA 59.041 52.632 24.95 10.23 44.83 3.93
199 200 2.732658 GCTGCTTGCAACAAGCCT 59.267 55.556 24.95 0.00 44.83 4.58
208 209 1.736645 CATGTGCCTTGCTGCTTGC 60.737 57.895 0.00 1.33 43.25 4.01
209 210 0.388134 GACATGTGCCTTGCTGCTTG 60.388 55.000 1.15 0.00 0.00 4.01
210 211 0.824595 TGACATGTGCCTTGCTGCTT 60.825 50.000 1.15 0.00 0.00 3.91
211 212 1.228337 TGACATGTGCCTTGCTGCT 60.228 52.632 1.15 0.00 0.00 4.24
212 213 1.080974 GTGACATGTGCCTTGCTGC 60.081 57.895 1.15 0.00 0.00 5.25
213 214 0.240145 CAGTGACATGTGCCTTGCTG 59.760 55.000 1.15 0.00 0.00 4.41
214 215 0.179009 ACAGTGACATGTGCCTTGCT 60.179 50.000 1.15 0.00 30.46 3.91
215 216 0.039798 CACAGTGACATGTGCCTTGC 60.040 55.000 1.15 0.00 43.69 4.01
222 223 2.253758 GCGTGCCACAGTGACATGT 61.254 57.895 10.44 0.00 0.00 3.21
223 224 2.557805 GCGTGCCACAGTGACATG 59.442 61.111 0.62 2.99 0.00 3.21
224 225 3.043713 CGCGTGCCACAGTGACAT 61.044 61.111 0.62 0.00 0.00 3.06
232 233 4.692475 AAGTACCCCGCGTGCCAC 62.692 66.667 4.92 0.00 0.00 5.01
233 234 3.479127 AAAAGTACCCCGCGTGCCA 62.479 57.895 4.92 0.00 0.00 4.92
234 235 2.670592 AAAAGTACCCCGCGTGCC 60.671 61.111 4.92 0.00 0.00 5.01
235 236 2.683859 GGAAAAGTACCCCGCGTGC 61.684 63.158 4.92 0.00 0.00 5.34
236 237 0.675522 ATGGAAAAGTACCCCGCGTG 60.676 55.000 4.92 0.00 0.00 5.34
237 238 0.675522 CATGGAAAAGTACCCCGCGT 60.676 55.000 4.92 0.00 0.00 6.01
238 239 0.675522 ACATGGAAAAGTACCCCGCG 60.676 55.000 0.00 0.00 0.00 6.46
239 240 1.541379 AACATGGAAAAGTACCCCGC 58.459 50.000 0.00 0.00 0.00 6.13
240 241 3.441222 GGTTAACATGGAAAAGTACCCCG 59.559 47.826 8.10 0.00 0.00 5.73
241 242 4.669700 AGGTTAACATGGAAAAGTACCCC 58.330 43.478 8.10 0.00 0.00 4.95
242 243 6.479006 ACTAGGTTAACATGGAAAAGTACCC 58.521 40.000 10.75 0.00 0.00 3.69
243 244 6.596888 GGACTAGGTTAACATGGAAAAGTACC 59.403 42.308 10.75 2.73 0.00 3.34
244 245 6.596888 GGGACTAGGTTAACATGGAAAAGTAC 59.403 42.308 10.75 2.42 0.00 2.73
245 246 6.574859 CGGGACTAGGTTAACATGGAAAAGTA 60.575 42.308 10.75 0.00 0.00 2.24
246 247 5.567430 GGGACTAGGTTAACATGGAAAAGT 58.433 41.667 10.75 1.45 0.00 2.66
247 248 4.634443 CGGGACTAGGTTAACATGGAAAAG 59.366 45.833 10.75 0.00 0.00 2.27
248 249 4.566070 CCGGGACTAGGTTAACATGGAAAA 60.566 45.833 10.75 0.00 0.00 2.29
249 250 3.054948 CCGGGACTAGGTTAACATGGAAA 60.055 47.826 10.75 0.00 0.00 3.13
250 251 2.502538 CCGGGACTAGGTTAACATGGAA 59.497 50.000 10.75 0.00 0.00 3.53
251 252 2.112998 CCGGGACTAGGTTAACATGGA 58.887 52.381 10.75 0.00 0.00 3.41
252 253 2.112998 TCCGGGACTAGGTTAACATGG 58.887 52.381 8.10 4.86 0.00 3.66
253 254 3.641906 AGATCCGGGACTAGGTTAACATG 59.358 47.826 8.10 0.00 0.00 3.21
254 255 3.641906 CAGATCCGGGACTAGGTTAACAT 59.358 47.826 8.10 2.34 0.00 2.71
255 256 3.028850 CAGATCCGGGACTAGGTTAACA 58.971 50.000 8.10 0.00 0.00 2.41
256 257 2.223994 GCAGATCCGGGACTAGGTTAAC 60.224 54.545 0.00 0.00 0.00 2.01
257 258 2.037144 GCAGATCCGGGACTAGGTTAA 58.963 52.381 0.00 0.00 0.00 2.01
258 259 1.700955 GCAGATCCGGGACTAGGTTA 58.299 55.000 0.00 0.00 0.00 2.85
259 260 1.049289 GGCAGATCCGGGACTAGGTT 61.049 60.000 0.00 0.00 0.00 3.50
260 261 1.457831 GGCAGATCCGGGACTAGGT 60.458 63.158 0.00 0.00 0.00 3.08
261 262 3.460995 GGCAGATCCGGGACTAGG 58.539 66.667 0.00 0.00 0.00 3.02
270 271 1.257743 TAGTAGGATGCGGCAGATCC 58.742 55.000 13.54 13.54 39.94 3.36
271 272 2.678324 GTTAGTAGGATGCGGCAGATC 58.322 52.381 9.25 1.44 0.00 2.75
272 273 1.000163 CGTTAGTAGGATGCGGCAGAT 60.000 52.381 9.25 0.00 0.00 2.90
273 274 0.384309 CGTTAGTAGGATGCGGCAGA 59.616 55.000 9.25 0.00 0.00 4.26
274 275 1.215655 GCGTTAGTAGGATGCGGCAG 61.216 60.000 9.25 0.00 0.00 4.85
275 276 1.227147 GCGTTAGTAGGATGCGGCA 60.227 57.895 4.58 4.58 0.00 5.69
276 277 1.215655 CTGCGTTAGTAGGATGCGGC 61.216 60.000 0.00 0.00 0.00 6.53
277 278 0.102481 ACTGCGTTAGTAGGATGCGG 59.898 55.000 0.00 0.00 38.04 5.69
278 279 1.478137 GACTGCGTTAGTAGGATGCG 58.522 55.000 0.00 0.00 40.53 4.73
279 280 1.478137 CGACTGCGTTAGTAGGATGC 58.522 55.000 0.00 0.00 40.53 3.91
284 285 1.741706 TCTTCCCGACTGCGTTAGTAG 59.258 52.381 0.00 0.00 40.53 2.57
285 286 1.825090 TCTTCCCGACTGCGTTAGTA 58.175 50.000 0.00 0.00 40.53 1.82
286 287 0.963962 TTCTTCCCGACTGCGTTAGT 59.036 50.000 0.00 0.00 44.02 2.24
287 288 1.347320 GTTCTTCCCGACTGCGTTAG 58.653 55.000 0.00 0.00 35.23 2.34
288 289 0.387622 CGTTCTTCCCGACTGCGTTA 60.388 55.000 0.00 0.00 35.23 3.18
289 290 1.663702 CGTTCTTCCCGACTGCGTT 60.664 57.895 0.00 0.00 35.23 4.84
290 291 2.049433 CGTTCTTCCCGACTGCGT 60.049 61.111 0.00 0.00 35.23 5.24
291 292 3.479269 GCGTTCTTCCCGACTGCG 61.479 66.667 0.00 0.00 37.24 5.18
292 293 3.119096 GGCGTTCTTCCCGACTGC 61.119 66.667 0.00 0.00 0.00 4.40
293 294 1.738099 CTGGCGTTCTTCCCGACTG 60.738 63.158 0.00 0.00 33.49 3.51
294 295 1.258445 ATCTGGCGTTCTTCCCGACT 61.258 55.000 0.00 0.00 33.49 4.18
295 296 0.806492 GATCTGGCGTTCTTCCCGAC 60.806 60.000 0.00 0.00 0.00 4.79
296 297 1.515954 GATCTGGCGTTCTTCCCGA 59.484 57.895 0.00 0.00 0.00 5.14
297 298 1.521681 GGATCTGGCGTTCTTCCCG 60.522 63.158 0.00 0.00 0.00 5.14
298 299 1.521681 CGGATCTGGCGTTCTTCCC 60.522 63.158 0.00 0.00 0.00 3.97
299 300 2.174319 GCGGATCTGGCGTTCTTCC 61.174 63.158 3.14 0.00 0.00 3.46
300 301 2.174319 GGCGGATCTGGCGTTCTTC 61.174 63.158 12.94 0.00 0.00 2.87
301 302 2.125106 GGCGGATCTGGCGTTCTT 60.125 61.111 12.94 0.00 0.00 2.52
302 303 2.735772 ATGGCGGATCTGGCGTTCT 61.736 57.895 21.91 5.20 37.19 3.01
303 304 2.203070 ATGGCGGATCTGGCGTTC 60.203 61.111 21.91 0.00 37.19 3.95
304 305 2.514592 CATGGCGGATCTGGCGTT 60.515 61.111 19.65 8.69 37.19 4.84
305 306 4.552365 CCATGGCGGATCTGGCGT 62.552 66.667 21.91 19.44 36.56 5.68
306 307 4.240103 TCCATGGCGGATCTGGCG 62.240 66.667 21.91 9.51 39.64 5.69
313 314 2.933287 AACCCTGTCCATGGCGGA 60.933 61.111 6.96 0.00 43.61 5.54
314 315 2.751436 CAACCCTGTCCATGGCGG 60.751 66.667 6.96 7.45 0.00 6.13
315 316 2.034066 ACAACCCTGTCCATGGCG 59.966 61.111 6.96 0.00 0.00 5.69
324 325 3.056107 TCTTCCTAATCACGACAACCCTG 60.056 47.826 0.00 0.00 0.00 4.45
330 331 2.565391 TGGCTTCTTCCTAATCACGACA 59.435 45.455 0.00 0.00 0.00 4.35
353 354 3.187637 GTGCCACGTCAAATAAAGTAGCA 59.812 43.478 0.00 0.00 0.00 3.49
356 357 4.382291 ACAGTGCCACGTCAAATAAAGTA 58.618 39.130 0.00 0.00 0.00 2.24
368 369 1.021390 GGGATGAGAACAGTGCCACG 61.021 60.000 0.00 0.00 0.00 4.94
372 373 2.011046 GCAGAGGGATGAGAACAGTGC 61.011 57.143 0.00 0.00 0.00 4.40
376 377 1.219124 GCGCAGAGGGATGAGAACA 59.781 57.895 0.30 0.00 0.00 3.18
377 378 1.522580 GGCGCAGAGGGATGAGAAC 60.523 63.158 10.83 0.00 0.00 3.01
381 382 3.785859 GGTGGCGCAGAGGGATGA 61.786 66.667 10.83 0.00 0.00 2.92
388 389 2.604686 AAGAGGAGGTGGCGCAGA 60.605 61.111 10.83 0.00 0.00 4.26
390 391 2.050836 TTTCAAGAGGAGGTGGCGCA 62.051 55.000 10.83 0.00 0.00 6.09
392 393 0.321671 TCTTTCAAGAGGAGGTGGCG 59.678 55.000 0.00 0.00 0.00 5.69
393 394 1.349357 AGTCTTTCAAGAGGAGGTGGC 59.651 52.381 0.00 0.00 35.32 5.01
394 395 4.284746 AGTTAGTCTTTCAAGAGGAGGTGG 59.715 45.833 0.00 0.00 35.32 4.61
395 396 5.474825 GAGTTAGTCTTTCAAGAGGAGGTG 58.525 45.833 0.00 0.00 35.32 4.00
396 397 4.528987 GGAGTTAGTCTTTCAAGAGGAGGT 59.471 45.833 0.00 0.00 35.32 3.85
399 400 4.283722 GGTGGAGTTAGTCTTTCAAGAGGA 59.716 45.833 0.00 0.00 35.32 3.71
402 403 3.640029 ACGGTGGAGTTAGTCTTTCAAGA 59.360 43.478 0.00 0.00 0.00 3.02
443 445 1.691823 GGGGAAGGGGTCCTCTTTG 59.308 63.158 5.19 0.00 44.68 2.77
459 461 3.707025 TATGACGGGTGGGGGAGGG 62.707 68.421 0.00 0.00 0.00 4.30
460 462 2.041301 TATGACGGGTGGGGGAGG 60.041 66.667 0.00 0.00 0.00 4.30
461 463 2.140792 CCTATGACGGGTGGGGGAG 61.141 68.421 0.00 0.00 0.00 4.30
465 467 1.622607 TTGCTCCTATGACGGGTGGG 61.623 60.000 0.00 0.00 0.00 4.61
473 475 2.093288 CCTCTGCTTGTTGCTCCTATGA 60.093 50.000 0.00 0.00 43.37 2.15
476 478 1.552337 CTCCTCTGCTTGTTGCTCCTA 59.448 52.381 0.00 0.00 43.37 2.94
477 479 0.324285 CTCCTCTGCTTGTTGCTCCT 59.676 55.000 0.00 0.00 43.37 3.69
484 486 0.767375 TTTCAGCCTCCTCTGCTTGT 59.233 50.000 0.00 0.00 36.81 3.16
490 492 0.035458 CGTGGTTTTCAGCCTCCTCT 59.965 55.000 0.00 0.00 0.00 3.69
499 501 0.035036 TGGCGATACCGTGGTTTTCA 59.965 50.000 0.00 0.00 43.94 2.69
501 503 1.303091 GCTGGCGATACCGTGGTTTT 61.303 55.000 0.00 0.00 43.94 2.43
507 509 1.644786 GCAAAAGCTGGCGATACCGT 61.645 55.000 0.00 0.00 43.94 4.83
518 520 0.773644 TCCTCCTCTTGGCAAAAGCT 59.226 50.000 0.00 0.00 0.00 3.74
531 533 1.753463 CTAGGCGACGGTTCCTCCT 60.753 63.158 6.22 0.00 34.02 3.69
536 538 1.207377 GCGATTCTAGGCGACGGTTC 61.207 60.000 0.00 0.00 0.00 3.62
541 543 1.583054 AAATGGCGATTCTAGGCGAC 58.417 50.000 0.00 2.76 36.92 5.19
544 546 2.291741 CAGGAAAATGGCGATTCTAGGC 59.708 50.000 0.00 0.00 0.00 3.93
547 549 3.454447 TCTCCAGGAAAATGGCGATTCTA 59.546 43.478 0.00 0.00 40.41 2.10
549 551 2.615912 CTCTCCAGGAAAATGGCGATTC 59.384 50.000 0.00 0.00 40.41 2.52
550 552 2.648059 CTCTCCAGGAAAATGGCGATT 58.352 47.619 0.00 0.00 40.41 3.34
553 555 0.749454 CCCTCTCCAGGAAAATGGCG 60.749 60.000 0.00 0.00 43.65 5.69
555 557 1.213926 CCTCCCTCTCCAGGAAAATGG 59.786 57.143 0.00 0.00 43.65 3.16
557 559 1.082879 TCCCTCCCTCTCCAGGAAAAT 59.917 52.381 0.00 0.00 43.65 1.82
563 565 0.041833 TTCACTCCCTCCCTCTCCAG 59.958 60.000 0.00 0.00 0.00 3.86
575 577 3.754965 TGCCAATAGCCATATTCACTCC 58.245 45.455 0.00 0.00 42.71 3.85
579 581 5.221986 ACTCAGATGCCAATAGCCATATTCA 60.222 40.000 0.00 0.00 42.71 2.57
581 583 5.252586 ACTCAGATGCCAATAGCCATATT 57.747 39.130 0.00 0.00 42.71 1.28
585 587 3.455910 ACTAACTCAGATGCCAATAGCCA 59.544 43.478 0.00 0.00 42.71 4.75
588 590 4.938080 ACGACTAACTCAGATGCCAATAG 58.062 43.478 0.00 0.00 0.00 1.73
590 592 3.895232 ACGACTAACTCAGATGCCAAT 57.105 42.857 0.00 0.00 0.00 3.16
616 618 3.261580 TGGTTGCACTACATCAGAATCG 58.738 45.455 0.00 0.00 0.00 3.34
622 624 5.528043 AATTGTTTGGTTGCACTACATCA 57.472 34.783 0.00 0.00 0.00 3.07
623 625 5.405269 GGAAATTGTTTGGTTGCACTACATC 59.595 40.000 0.00 0.00 0.00 3.06
624 626 5.163364 TGGAAATTGTTTGGTTGCACTACAT 60.163 36.000 0.00 0.00 0.00 2.29
630 632 3.314635 GCAATGGAAATTGTTTGGTTGCA 59.685 39.130 0.00 0.00 40.13 4.08
637 639 7.879160 AGAATATGTGTGCAATGGAAATTGTTT 59.121 29.630 0.00 0.00 34.21 2.83
646 648 5.571784 ACTCAAGAATATGTGTGCAATGG 57.428 39.130 0.00 0.00 0.00 3.16
648 650 6.869913 CCAAAACTCAAGAATATGTGTGCAAT 59.130 34.615 0.00 0.00 0.00 3.56
651 653 5.772521 ACCAAAACTCAAGAATATGTGTGC 58.227 37.500 0.00 0.00 0.00 4.57
663 665 8.698973 TCCTACATTATGAAACCAAAACTCAA 57.301 30.769 0.00 0.00 0.00 3.02
700 702 9.985730 GGCAAATATATGGATCTCAAATTTCAA 57.014 29.630 0.00 0.00 0.00 2.69
701 703 9.370930 AGGCAAATATATGGATCTCAAATTTCA 57.629 29.630 0.00 0.00 0.00 2.69
782 796 3.312890 CCCTCTCTCTCTCTCTCTCTCT 58.687 54.545 0.00 0.00 0.00 3.10
783 797 2.370189 CCCCTCTCTCTCTCTCTCTCTC 59.630 59.091 0.00 0.00 0.00 3.20
795 832 2.021457 CTCTCGTTTCTCCCCTCTCTC 58.979 57.143 0.00 0.00 0.00 3.20
830 867 2.789409 AGTTAAGCTAAGCCCACTGG 57.211 50.000 0.00 0.00 0.00 4.00
831 868 4.072131 TGAAAGTTAAGCTAAGCCCACTG 58.928 43.478 0.00 0.00 0.00 3.66
832 869 4.072839 GTGAAAGTTAAGCTAAGCCCACT 58.927 43.478 0.00 0.00 0.00 4.00
833 870 4.072839 AGTGAAAGTTAAGCTAAGCCCAC 58.927 43.478 0.00 0.00 0.00 4.61
841 884 3.386768 TGAGCGAGTGAAAGTTAAGCT 57.613 42.857 0.00 0.00 36.06 3.74
846 889 4.632153 ACACTAATGAGCGAGTGAAAGTT 58.368 39.130 8.91 0.00 44.88 2.66
851 894 2.099263 GGCTACACTAATGAGCGAGTGA 59.901 50.000 8.91 0.00 44.88 3.41
929 972 4.040198 AAGGGGAGGGGAGGGGAC 62.040 72.222 0.00 0.00 0.00 4.46
981 1024 4.918201 GATGGCTTCCCCTCGGCG 62.918 72.222 0.00 0.00 0.00 6.46
982 1025 4.570874 GGATGGCTTCCCCTCGGC 62.571 72.222 8.20 0.00 38.75 5.54
983 1026 2.455565 ATGGATGGCTTCCCCTCGG 61.456 63.158 16.09 0.00 44.77 4.63
984 1027 1.228063 CATGGATGGCTTCCCCTCG 60.228 63.158 16.09 0.00 44.77 4.63
985 1028 1.152368 CCATGGATGGCTTCCCCTC 59.848 63.158 16.09 0.00 44.77 4.30
1647 1693 2.124693 CGGTGAGAGGAGGAGGAGC 61.125 68.421 0.00 0.00 0.00 4.70
1672 1718 0.250338 ACCTTCCGAGCACAAGAACC 60.250 55.000 0.00 0.00 0.00 3.62
1673 1719 1.149148 GACCTTCCGAGCACAAGAAC 58.851 55.000 0.00 0.00 0.00 3.01
1809 1868 0.921896 ATGGTGAATGGAGGAGTGGG 59.078 55.000 0.00 0.00 0.00 4.61
1812 1871 1.210478 CGGAATGGTGAATGGAGGAGT 59.790 52.381 0.00 0.00 0.00 3.85
1853 1912 0.829602 TGCCCTGCAAAAATCGGGAA 60.830 50.000 10.54 0.00 39.08 3.97
1977 2059 2.682952 AGTATACGAAGATGCCGACG 57.317 50.000 0.00 0.00 0.00 5.12
1986 2068 5.062308 GGCACAACTGAAGAAGTATACGAAG 59.938 44.000 0.00 0.00 38.56 3.79
2075 2201 2.821991 ACTTCTCCTTGTGGAAGTCG 57.178 50.000 0.00 0.00 45.95 4.18
2144 2270 1.726791 CCGAGGATGATTTTATCGCGG 59.273 52.381 6.13 0.00 38.44 6.46
2147 2273 5.928839 AGATTCACCGAGGATGATTTTATCG 59.071 40.000 0.00 0.00 0.00 2.92
2149 2275 6.595682 ACAGATTCACCGAGGATGATTTTAT 58.404 36.000 0.00 0.00 0.00 1.40
2212 2344 2.973224 CACGTTTACAAACATGCTCTGC 59.027 45.455 5.74 0.00 38.81 4.26
2262 2394 1.314730 AACACGGACCAATGAACCAC 58.685 50.000 0.00 0.00 0.00 4.16
2263 2395 2.932855 TAACACGGACCAATGAACCA 57.067 45.000 0.00 0.00 0.00 3.67
2264 2396 3.404899 TCTTAACACGGACCAATGAACC 58.595 45.455 0.00 0.00 0.00 3.62
2269 2401 3.251487 CGGTTTTCTTAACACGGACCAAT 59.749 43.478 0.00 0.00 0.00 3.16
2273 2405 3.950087 AACGGTTTTCTTAACACGGAC 57.050 42.857 0.00 0.00 0.00 4.79
2276 2408 6.020372 TGTAACAAACGGTTTTCTTAACACG 58.980 36.000 2.79 0.00 40.96 4.49
2304 2436 8.723942 ATAGTTTCTGTAGGCAAGACTAATTG 57.276 34.615 0.00 0.00 0.00 2.32
2305 2437 7.707035 CGATAGTTTCTGTAGGCAAGACTAATT 59.293 37.037 0.00 0.00 0.00 1.40
2306 2438 7.203910 CGATAGTTTCTGTAGGCAAGACTAAT 58.796 38.462 0.00 0.00 0.00 1.73
2307 2439 6.561614 CGATAGTTTCTGTAGGCAAGACTAA 58.438 40.000 0.00 0.00 0.00 2.24
2308 2440 5.450137 GCGATAGTTTCTGTAGGCAAGACTA 60.450 44.000 0.00 0.00 39.35 2.59
2309 2441 4.678309 GCGATAGTTTCTGTAGGCAAGACT 60.678 45.833 0.00 0.00 39.35 3.24
2310 2442 3.552294 GCGATAGTTTCTGTAGGCAAGAC 59.448 47.826 0.00 0.00 39.35 3.01
2311 2443 3.447586 AGCGATAGTTTCTGTAGGCAAGA 59.552 43.478 0.00 0.00 39.35 3.02
2312 2444 3.786635 AGCGATAGTTTCTGTAGGCAAG 58.213 45.455 0.00 0.00 39.35 4.01
2313 2445 3.194755 TGAGCGATAGTTTCTGTAGGCAA 59.805 43.478 0.00 0.00 39.35 4.52
2314 2446 2.758423 TGAGCGATAGTTTCTGTAGGCA 59.242 45.455 0.00 0.00 39.35 4.75
2315 2447 3.117046 GTGAGCGATAGTTTCTGTAGGC 58.883 50.000 0.00 0.00 39.35 3.93
2316 2448 4.336993 AGAGTGAGCGATAGTTTCTGTAGG 59.663 45.833 0.00 0.00 39.35 3.18
2317 2449 5.493133 AGAGTGAGCGATAGTTTCTGTAG 57.507 43.478 0.00 0.00 39.35 2.74
2318 2450 6.114089 ACTAGAGTGAGCGATAGTTTCTGTA 58.886 40.000 0.00 0.00 39.35 2.74
2319 2451 4.944930 ACTAGAGTGAGCGATAGTTTCTGT 59.055 41.667 0.00 0.00 39.35 3.41
2435 3397 7.410174 ACATGGAAGGAGATACAATGGTTAAA 58.590 34.615 0.00 0.00 0.00 1.52
2536 3501 8.708378 TCAGATGCAAAATAAGGAGAGAGATTA 58.292 33.333 0.00 0.00 0.00 1.75
2568 3533 2.030946 CGCAAAGTAATAGCAGACTGCC 59.969 50.000 23.74 8.15 46.52 4.85
2757 3723 8.490311 TGTTTTCCTTTGAAATACTCCCAAAAT 58.510 29.630 0.00 0.00 40.08 1.82
2895 4209 0.537188 AGGGTGTAGCAGTCCAATCG 59.463 55.000 0.00 0.00 0.00 3.34
3003 4321 1.535204 GCCTCAACAACACCCCATGG 61.535 60.000 4.14 4.14 37.80 3.66
3335 4660 8.755977 GGTTCCTATATATCCATAACTTTCGGA 58.244 37.037 0.00 0.00 0.00 4.55
3515 5075 9.958180 TTATTGTGATTCTCCAGAAACAAGATA 57.042 29.630 10.73 6.15 37.84 1.98
3516 5076 8.734386 GTTATTGTGATTCTCCAGAAACAAGAT 58.266 33.333 10.73 6.83 37.84 2.40
3525 5085 7.149569 ACAACATGTTATTGTGATTCTCCAG 57.850 36.000 11.53 0.00 38.84 3.86
3534 5094 6.207417 AGAGAAAGGGACAACATGTTATTGTG 59.793 38.462 11.53 1.40 40.36 3.33
3589 5149 5.121454 GTGATTCTCCATGAACAGTTCAGAC 59.879 44.000 20.55 3.73 43.98 3.51
3593 5153 5.947228 TTGTGATTCTCCATGAACAGTTC 57.053 39.130 6.32 6.32 37.52 3.01
3668 5228 9.983804 CTATCGTCTTAGGTAAAAATGAAAACC 57.016 33.333 0.00 0.00 0.00 3.27
3790 5372 6.602803 AGGTAAACACATGCATATGAACATCA 59.397 34.615 12.92 0.00 37.73 3.07
3971 5562 2.306715 AAAAAGGGGCCGGGAACAGT 62.307 55.000 2.18 0.00 0.00 3.55
3973 5564 2.609920 AAAAAGGGGCCGGGAACA 59.390 55.556 2.18 0.00 0.00 3.18
4051 5659 7.748691 TGAATCTGTTGAATCAGTGAAATCA 57.251 32.000 0.00 2.15 36.85 2.57
4399 6007 0.607489 CCTGTTTCCTCCAGCACCAG 60.607 60.000 0.00 0.00 0.00 4.00
4474 6085 4.706962 GCTTTTCCATTTCAGGACTACCAT 59.293 41.667 0.00 0.00 37.42 3.55
4541 6152 0.616371 TACGGCTGGCATACCTGTTT 59.384 50.000 1.08 0.00 37.23 2.83
4703 6332 2.175878 TTCTTCTCAGGTCTTGCTGC 57.824 50.000 0.00 0.00 0.00 5.25
4860 6495 2.781595 CTATACGGCGGGACATGGCC 62.782 65.000 10.00 10.00 45.95 5.36
4958 6609 2.106683 GCTGAATACGCCCACGCTT 61.107 57.895 0.00 0.00 45.53 4.68
5029 6683 2.107041 CTTACCGGCACCACCAGACA 62.107 60.000 0.00 0.00 39.03 3.41
5210 6873 2.973224 CGCGAAAAACACATCCTCAAAG 59.027 45.455 0.00 0.00 0.00 2.77
5248 6911 0.239879 CAATTTCCAACCGTCCCGTG 59.760 55.000 0.00 0.00 0.00 4.94
5250 6913 0.519961 GTCAATTTCCAACCGTCCCG 59.480 55.000 0.00 0.00 0.00 5.14
5251 6914 1.905637 AGTCAATTTCCAACCGTCCC 58.094 50.000 0.00 0.00 0.00 4.46
5253 6916 3.071479 TGCTAGTCAATTTCCAACCGTC 58.929 45.455 0.00 0.00 0.00 4.79
5254 6917 3.134574 TGCTAGTCAATTTCCAACCGT 57.865 42.857 0.00 0.00 0.00 4.83
5255 6918 3.670627 GCTTGCTAGTCAATTTCCAACCG 60.671 47.826 0.00 0.00 33.57 4.44
5258 6921 5.010922 ACATTGCTTGCTAGTCAATTTCCAA 59.989 36.000 12.40 0.79 33.57 3.53
5261 6924 6.846350 AGTACATTGCTTGCTAGTCAATTTC 58.154 36.000 12.40 8.06 33.57 2.17
5262 6925 6.824305 AGTACATTGCTTGCTAGTCAATTT 57.176 33.333 12.40 10.20 33.57 1.82
5352 7104 5.069648 TGGGTTCATCTTGTGTTTGCATAAA 59.930 36.000 0.00 0.00 0.00 1.40
5358 7110 3.243805 TGCATGGGTTCATCTTGTGTTTG 60.244 43.478 0.00 0.00 0.00 2.93
5438 7202 3.243168 GCACATGACACAAACACAGACAT 60.243 43.478 0.00 0.00 0.00 3.06
5447 7211 3.550820 ACCAGTTAGCACATGACACAAA 58.449 40.909 0.00 0.00 0.00 2.83
5451 7215 3.951037 ACAAAACCAGTTAGCACATGACA 59.049 39.130 0.00 0.00 0.00 3.58
5452 7216 4.202010 ACACAAAACCAGTTAGCACATGAC 60.202 41.667 0.00 0.00 0.00 3.06
5453 7217 3.951037 ACACAAAACCAGTTAGCACATGA 59.049 39.130 0.00 0.00 0.00 3.07
5454 7218 4.202000 TGACACAAAACCAGTTAGCACATG 60.202 41.667 0.00 0.00 0.00 3.21
5455 7219 3.951037 TGACACAAAACCAGTTAGCACAT 59.049 39.130 0.00 0.00 0.00 3.21
5456 7220 3.348119 TGACACAAAACCAGTTAGCACA 58.652 40.909 0.00 0.00 0.00 4.57
5457 7221 4.202010 ACATGACACAAAACCAGTTAGCAC 60.202 41.667 0.00 0.00 0.00 4.40
5458 7222 3.951037 ACATGACACAAAACCAGTTAGCA 59.049 39.130 0.00 0.00 0.00 3.49
5459 7223 4.568152 ACATGACACAAAACCAGTTAGC 57.432 40.909 0.00 0.00 0.00 3.09
5460 7224 6.861065 AGTACATGACACAAAACCAGTTAG 57.139 37.500 0.00 0.00 0.00 2.34
5461 7225 7.988599 AGTTAGTACATGACACAAAACCAGTTA 59.011 33.333 0.00 0.00 0.00 2.24
5462 7226 6.826741 AGTTAGTACATGACACAAAACCAGTT 59.173 34.615 0.00 0.00 0.00 3.16
5463 7227 6.260050 CAGTTAGTACATGACACAAAACCAGT 59.740 38.462 0.00 0.00 0.00 4.00
5464 7228 6.293407 CCAGTTAGTACATGACACAAAACCAG 60.293 42.308 0.00 2.81 0.00 4.00
5465 7229 5.529430 CCAGTTAGTACATGACACAAAACCA 59.471 40.000 0.00 0.00 0.00 3.67
5466 7230 5.529800 ACCAGTTAGTACATGACACAAAACC 59.470 40.000 0.00 0.00 0.00 3.27
5467 7231 6.259167 TCACCAGTTAGTACATGACACAAAAC 59.741 38.462 0.00 6.12 0.00 2.43
5468 7232 6.350103 TCACCAGTTAGTACATGACACAAAA 58.650 36.000 0.00 0.00 0.00 2.44
5469 7233 5.919755 TCACCAGTTAGTACATGACACAAA 58.080 37.500 0.00 0.00 0.00 2.83
5470 7234 5.538849 TCACCAGTTAGTACATGACACAA 57.461 39.130 0.00 0.00 0.00 3.33
5471 7235 5.538849 TTCACCAGTTAGTACATGACACA 57.461 39.130 0.00 0.00 0.00 3.72
5472 7236 8.542497 TTAATTCACCAGTTAGTACATGACAC 57.458 34.615 0.00 0.00 0.00 3.67
5483 7247 4.709397 CCCTGCCAATTAATTCACCAGTTA 59.291 41.667 0.00 0.00 0.00 2.24
5562 7326 5.086104 ACGCCTTATAGCCGATTATTGAT 57.914 39.130 0.00 0.00 0.00 2.57
5567 7862 2.409975 GCAACGCCTTATAGCCGATTA 58.590 47.619 0.00 0.00 0.00 1.75
5590 7885 7.061210 CGACTATTAGATTGGCTCTAAATGACG 59.939 40.741 0.00 5.48 46.80 4.35
5695 7990 2.030551 CCGGCTATAGCACGAGACA 58.969 57.895 26.88 0.00 44.36 3.41
5700 8197 0.596577 TAAGAGCCGGCTATAGCACG 59.403 55.000 32.97 23.23 44.36 5.34
5798 8301 8.999431 CAGTTACAATAAGGTGACATAAACTGT 58.001 33.333 0.00 0.00 42.15 3.55
5800 8303 7.883311 AGCAGTTACAATAAGGTGACATAAACT 59.117 33.333 0.00 0.00 30.34 2.66
5821 8324 2.109774 CATTCAGAGAGGAGGAGCAGT 58.890 52.381 0.00 0.00 0.00 4.40
5822 8325 2.109774 ACATTCAGAGAGGAGGAGCAG 58.890 52.381 0.00 0.00 0.00 4.24
5828 8331 1.638133 CACGCACATTCAGAGAGGAG 58.362 55.000 0.00 0.00 0.00 3.69
5829 8332 0.390340 GCACGCACATTCAGAGAGGA 60.390 55.000 0.00 0.00 0.00 3.71
5830 8333 0.390866 AGCACGCACATTCAGAGAGG 60.391 55.000 0.00 0.00 0.00 3.69
5852 8384 9.495572 TTTGAGAAAGAATCTAGGAGAAAAGAC 57.504 33.333 0.00 0.00 38.96 3.01
5867 8399 8.405531 CACTTGACTTATTGGTTTGAGAAAGAA 58.594 33.333 0.00 0.00 0.00 2.52
5879 8411 9.185192 GTCTTGAAATTTCACTTGACTTATTGG 57.815 33.333 25.25 3.98 36.83 3.16
5886 8418 7.172361 AGCTAGAGTCTTGAAATTTCACTTGAC 59.828 37.037 25.21 25.21 36.83 3.18
5896 8428 6.402983 CGAATTTGCAGCTAGAGTCTTGAAAT 60.403 38.462 5.73 0.33 0.00 2.17
5897 8429 5.106948 CGAATTTGCAGCTAGAGTCTTGAAA 60.107 40.000 5.73 0.00 0.00 2.69
5899 8431 3.928992 CGAATTTGCAGCTAGAGTCTTGA 59.071 43.478 5.73 0.00 0.00 3.02
5900 8432 3.681897 ACGAATTTGCAGCTAGAGTCTTG 59.318 43.478 0.00 0.00 0.00 3.02
5902 8434 3.257393 CACGAATTTGCAGCTAGAGTCT 58.743 45.455 0.00 0.00 0.00 3.24
5903 8435 2.349886 CCACGAATTTGCAGCTAGAGTC 59.650 50.000 0.00 0.00 0.00 3.36
5904 8436 2.350522 CCACGAATTTGCAGCTAGAGT 58.649 47.619 0.00 0.00 0.00 3.24
5969 8511 4.959839 TGTGGCATATCTAGTTACAGTGGA 59.040 41.667 0.00 0.00 0.00 4.02
5973 8515 6.515832 TCACATGTGGCATATCTAGTTACAG 58.484 40.000 25.16 0.00 0.00 2.74
6092 8642 5.398603 AAATTGGGTTGTCGCATCAATTA 57.601 34.783 0.00 0.00 37.14 1.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.