Multiple sequence alignment - TraesCS6D01G002400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G002400 chr6D 100.000 4489 0 0 1 4489 1487867 1492355 0.000000e+00 8290.0
1 TraesCS6D01G002400 chr6D 90.580 966 73 10 831 1796 606204 605257 0.000000e+00 1264.0
2 TraesCS6D01G002400 chr6D 83.713 835 92 17 2 813 1479608 1480421 0.000000e+00 749.0
3 TraesCS6D01G002400 chr6D 81.092 751 86 29 1973 2686 605136 604405 2.360000e-152 549.0
4 TraesCS6D01G002400 chr6D 94.472 199 11 0 2680 2878 604367 604169 1.570000e-79 307.0
5 TraesCS6D01G002400 chr6D 90.345 145 14 0 1 145 636048 635904 1.650000e-44 191.0
6 TraesCS6D01G002400 chr6D 83.249 197 31 2 2368 2563 1445717 1445912 3.570000e-41 180.0
7 TraesCS6D01G002400 chr6B 94.841 2869 114 22 890 3751 5790380 5793221 0.000000e+00 4447.0
8 TraesCS6D01G002400 chr6B 94.787 2858 118 20 890 3741 5793798 5796630 0.000000e+00 4423.0
9 TraesCS6D01G002400 chr6B 94.753 2344 110 4 1939 4280 2073233 2075565 0.000000e+00 3635.0
10 TraesCS6D01G002400 chr6B 92.850 965 54 7 862 1823 2072226 2073178 0.000000e+00 1386.0
11 TraesCS6D01G002400 chr6B 89.663 832 64 15 2 813 2071171 2072000 0.000000e+00 1040.0
12 TraesCS6D01G002400 chr6B 92.701 137 8 2 531 667 5789917 5790051 3.540000e-46 196.0
13 TraesCS6D01G002400 chr6B 92.701 137 8 2 531 667 5793335 5793469 3.540000e-46 196.0
14 TraesCS6D01G002400 chr6B 83.030 165 13 7 4338 4488 2075576 2075739 7.830000e-28 135.0
15 TraesCS6D01G002400 chr6B 95.652 46 2 0 827 872 5790341 5790386 1.730000e-09 75.0
16 TraesCS6D01G002400 chr6B 97.674 43 1 0 830 872 5793762 5793804 1.730000e-09 75.0
17 TraesCS6D01G002400 chr6B 97.674 43 1 0 4422 4464 21990749 21990791 1.730000e-09 75.0
18 TraesCS6D01G002400 chr6B 96.970 33 1 0 827 859 2072203 2072235 6.270000e-04 56.5
19 TraesCS6D01G002400 chr2B 87.071 1400 167 12 2886 4280 755628650 755630040 0.000000e+00 1570.0
20 TraesCS6D01G002400 chr2B 88.017 1160 134 4 2868 4024 755593310 755594467 0.000000e+00 1367.0
21 TraesCS6D01G002400 chr2B 88.689 946 89 10 1945 2878 755592339 755593278 0.000000e+00 1138.0
22 TraesCS6D01G002400 chr2B 80.190 1055 148 33 838 1869 755591324 755592340 0.000000e+00 734.0
23 TraesCS6D01G002400 chrUn 86.944 1371 165 12 2892 4257 228625083 228626444 0.000000e+00 1528.0
24 TraesCS6D01G002400 chr4A 88.165 1166 132 5 2868 4027 744537207 744536042 0.000000e+00 1384.0
25 TraesCS6D01G002400 chr4A 95.652 46 2 0 748 793 710717443 710717488 1.730000e-09 75.0
26 TraesCS6D01G002400 chr4D 87.350 1170 144 4 2868 4035 19753338 19752171 0.000000e+00 1338.0
27 TraesCS6D01G002400 chr4D 87.318 1167 144 4 2868 4032 19783323 19784487 0.000000e+00 1332.0
28 TraesCS6D01G002400 chr4D 89.002 982 72 13 830 1796 19755869 19754909 0.000000e+00 1182.0
29 TraesCS6D01G002400 chr4D 88.434 830 60 13 827 1641 19774301 19775109 0.000000e+00 968.0
30 TraesCS6D01G002400 chr4D 93.023 559 39 0 2128 2686 19782493 19783051 0.000000e+00 817.0
31 TraesCS6D01G002400 chr4D 92.844 559 40 0 2128 2686 19754168 19753610 0.000000e+00 811.0
32 TraesCS6D01G002400 chr4D 84.686 542 49 13 275 788 19773567 19774102 1.110000e-140 510.0
33 TraesCS6D01G002400 chr4D 92.611 203 11 1 2680 2878 19753572 19753370 5.680000e-74 289.0
34 TraesCS6D01G002400 chr4D 92.611 203 11 1 2680 2878 19783089 19783291 5.680000e-74 289.0
35 TraesCS6D01G002400 chr4D 91.667 60 3 2 744 802 498045274 498045216 1.030000e-11 82.4
36 TraesCS6D01G002400 chr3D 79.374 926 126 39 883 1791 1656017 1656894 3.870000e-165 592.0
37 TraesCS6D01G002400 chr3A 78.848 903 132 31 905 1794 7388969 7388113 5.070000e-154 555.0
38 TraesCS6D01G002400 chr3A 84.416 77 9 3 719 793 584277889 584277814 6.230000e-09 73.1
39 TraesCS6D01G002400 chr6A 81.395 215 31 7 2375 2585 3328078 3327869 2.780000e-37 167.0
40 TraesCS6D01G002400 chr6A 86.792 53 7 0 102 154 180925729 180925677 4.850000e-05 60.2
41 TraesCS6D01G002400 chr1A 74.725 273 50 10 2743 3003 249376390 249376125 2.210000e-18 104.0
42 TraesCS6D01G002400 chr1A 92.000 50 4 0 744 793 154014251 154014202 2.240000e-08 71.3
43 TraesCS6D01G002400 chr7A 74.265 272 53 8 2743 3003 17458474 17458739 1.030000e-16 99.0
44 TraesCS6D01G002400 chr7A 93.617 47 3 0 4427 4473 130851 130805 2.240000e-08 71.3
45 TraesCS6D01G002400 chr5A 92.308 65 2 3 4344 4406 688712890 688712953 6.180000e-14 89.8
46 TraesCS6D01G002400 chr5A 93.750 48 3 0 746 793 661052159 661052112 6.230000e-09 73.1
47 TraesCS6D01G002400 chr1D 88.571 70 7 1 1878 1946 310779134 310779065 2.880000e-12 84.2
48 TraesCS6D01G002400 chr1D 94.000 50 1 1 744 793 138277312 138277265 1.730000e-09 75.0
49 TraesCS6D01G002400 chr3B 95.652 46 2 0 748 793 663183570 663183615 1.730000e-09 75.0
50 TraesCS6D01G002400 chr2D 95.652 46 2 0 748 793 81298282 81298237 1.730000e-09 75.0
51 TraesCS6D01G002400 chr7D 95.556 45 2 0 744 788 604995591 604995547 6.230000e-09 73.1
52 TraesCS6D01G002400 chr5D 97.297 37 1 0 166 202 360976838 360976874 3.750000e-06 63.9
53 TraesCS6D01G002400 chr5B 87.500 56 4 3 611 666 61383844 61383792 1.350000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G002400 chr6D 1487867 1492355 4488 False 8290.000000 8290 100.000000 1 4489 1 chr6D.!!$F3 4488
1 TraesCS6D01G002400 chr6D 1479608 1480421 813 False 749.000000 749 83.713000 2 813 1 chr6D.!!$F2 811
2 TraesCS6D01G002400 chr6D 604169 606204 2035 True 706.666667 1264 88.714667 831 2878 3 chr6D.!!$R2 2047
3 TraesCS6D01G002400 chr6B 5789917 5796630 6713 False 1568.666667 4447 94.726000 531 3751 6 chr6B.!!$F3 3220
4 TraesCS6D01G002400 chr6B 2071171 2075739 4568 False 1250.500000 3635 91.453200 2 4488 5 chr6B.!!$F2 4486
5 TraesCS6D01G002400 chr2B 755628650 755630040 1390 False 1570.000000 1570 87.071000 2886 4280 1 chr2B.!!$F1 1394
6 TraesCS6D01G002400 chr2B 755591324 755594467 3143 False 1079.666667 1367 85.632000 838 4024 3 chr2B.!!$F2 3186
7 TraesCS6D01G002400 chrUn 228625083 228626444 1361 False 1528.000000 1528 86.944000 2892 4257 1 chrUn.!!$F1 1365
8 TraesCS6D01G002400 chr4A 744536042 744537207 1165 True 1384.000000 1384 88.165000 2868 4027 1 chr4A.!!$R1 1159
9 TraesCS6D01G002400 chr4D 19752171 19755869 3698 True 905.000000 1338 90.451750 830 4035 4 chr4D.!!$R2 3205
10 TraesCS6D01G002400 chr4D 19782493 19784487 1994 False 812.666667 1332 90.984000 2128 4032 3 chr4D.!!$F2 1904
11 TraesCS6D01G002400 chr4D 19773567 19775109 1542 False 739.000000 968 86.560000 275 1641 2 chr4D.!!$F1 1366
12 TraesCS6D01G002400 chr3D 1656017 1656894 877 False 592.000000 592 79.374000 883 1791 1 chr3D.!!$F1 908
13 TraesCS6D01G002400 chr3A 7388113 7388969 856 True 555.000000 555 78.848000 905 1794 1 chr3A.!!$R1 889

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
690 723 0.184692 TGGTTGTGGATGCACAGGAA 59.815 50.0 19.83 2.96 36.35 3.36 F
1498 1787 0.037326 GGAGATCCACAACGTCAGCA 60.037 55.0 0.00 0.00 35.64 4.41 F
1744 2033 0.239347 CAACTGCTCCAAAGGCTTCG 59.761 55.0 0.00 0.00 0.00 3.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1574 1863 1.079681 TGGCCGCCGTAGTTGTTAG 60.080 57.895 4.58 0.00 0.00 2.34 R
3169 7505 2.234908 AGAAATGACTTGAGGTCCTCCG 59.765 50.000 16.60 9.78 43.89 4.63 R
3701 8038 2.232941 CGGTGAGTAGGCCTTCTTGTAA 59.767 50.000 12.58 0.00 0.00 2.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
83 84 6.942576 TGGATAATATTTAGCCCTCTTTCTGC 59.057 38.462 0.00 0.00 0.00 4.26
85 86 1.383523 ATTTAGCCCTCTTTCTGCGC 58.616 50.000 0.00 0.00 0.00 6.09
98 99 3.149338 CTGCGCCTTTGTTTGCCCA 62.149 57.895 4.18 0.00 0.00 5.36
102 103 1.592064 CGCCTTTGTTTGCCCAAAAT 58.408 45.000 0.00 0.00 34.15 1.82
159 160 6.704289 TGGACGCTTAGTATAACTGTGTAT 57.296 37.500 0.00 0.00 0.00 2.29
194 195 4.552166 AGTGTGCGTCAATTAATATGGC 57.448 40.909 0.00 0.00 0.00 4.40
197 198 4.035091 GTGTGCGTCAATTAATATGGCTCA 59.965 41.667 0.00 0.00 0.00 4.26
215 216 4.698583 CTCAGAGGGAGCAATTCTTTTG 57.301 45.455 0.00 0.00 36.69 2.44
367 368 7.383029 GCATCATTTTCTGAAACTGTTCATTGA 59.617 33.333 16.78 2.88 42.85 2.57
375 376 4.940654 TGAAACTGTTCATTGACACACTCA 59.059 37.500 0.00 0.00 38.88 3.41
476 491 0.889186 GGACTTGCCAACATCGGTGT 60.889 55.000 0.00 0.00 41.28 4.16
500 515 2.879026 GAGTGGTGGTTCCTTCTTGAAC 59.121 50.000 0.00 0.00 43.10 3.18
689 722 0.405198 ATGGTTGTGGATGCACAGGA 59.595 50.000 19.83 8.60 36.35 3.86
690 723 0.184692 TGGTTGTGGATGCACAGGAA 59.815 50.000 19.83 2.96 36.35 3.36
824 886 3.057174 GGTAGTGATCTCTTATGGCTCGG 60.057 52.174 2.05 0.00 0.00 4.63
825 887 1.342819 AGTGATCTCTTATGGCTCGGC 59.657 52.381 0.00 0.00 0.00 5.54
826 888 0.315251 TGATCTCTTATGGCTCGGCG 59.685 55.000 0.00 0.00 0.00 6.46
827 889 1.005630 ATCTCTTATGGCTCGGCGC 60.006 57.895 0.00 0.00 38.13 6.53
828 890 1.748329 ATCTCTTATGGCTCGGCGCA 61.748 55.000 10.83 0.00 41.67 6.09
1029 1303 3.050275 GGCCTGACCTGCAACGAC 61.050 66.667 0.00 0.00 34.51 4.34
1040 1314 2.612567 GCAACGACACCGGCATTGA 61.613 57.895 0.00 0.00 40.78 2.57
1041 1315 1.922135 GCAACGACACCGGCATTGAT 61.922 55.000 0.00 0.00 40.78 2.57
1042 1316 0.179192 CAACGACACCGGCATTGATG 60.179 55.000 0.00 0.00 40.78 3.07
1050 1324 0.752743 CCGGCATTGATGATGGTGGT 60.753 55.000 0.00 0.00 36.21 4.16
1083 1360 3.389925 TTTTATGACGACGTGGAGGTT 57.610 42.857 4.58 0.00 0.00 3.50
1133 1410 3.871463 GCCCGGATGCTGAATGATATCTT 60.871 47.826 0.73 0.00 0.00 2.40
1160 1437 1.128200 TGCTACAACACCACCACTCT 58.872 50.000 0.00 0.00 0.00 3.24
1171 1448 1.566211 CACCACTCTGGAGATGGACT 58.434 55.000 18.72 0.00 40.96 3.85
1173 1450 1.360852 ACCACTCTGGAGATGGACTCT 59.639 52.381 18.72 0.00 40.96 3.24
1174 1451 2.225496 ACCACTCTGGAGATGGACTCTT 60.225 50.000 18.72 2.16 40.96 2.85
1175 1452 2.430332 CCACTCTGGAGATGGACTCTTC 59.570 54.545 4.49 0.00 40.96 2.87
1179 1456 2.630889 TGGAGATGGACTCTTCAGGT 57.369 50.000 0.00 0.00 44.37 4.00
1181 1458 2.834549 TGGAGATGGACTCTTCAGGTTC 59.165 50.000 0.00 0.00 44.37 3.62
1182 1459 2.834549 GGAGATGGACTCTTCAGGTTCA 59.165 50.000 0.00 0.00 44.37 3.18
1183 1460 3.454082 GGAGATGGACTCTTCAGGTTCAT 59.546 47.826 0.00 0.00 44.37 2.57
1184 1461 4.442753 GGAGATGGACTCTTCAGGTTCATC 60.443 50.000 6.94 6.94 45.27 2.92
1185 1462 3.454082 AGATGGACTCTTCAGGTTCATCC 59.546 47.826 10.41 0.00 45.77 3.51
1186 1463 4.820841 AGATGGACTCTTCAGGTTCATCCT 60.821 45.833 10.41 0.00 45.77 3.24
1187 1464 3.251484 TGGACTCTTCAGGTTCATCCTT 58.749 45.455 0.00 0.00 45.67 3.36
1188 1465 3.261897 TGGACTCTTCAGGTTCATCCTTC 59.738 47.826 0.00 0.00 45.67 3.46
1189 1466 3.261897 GGACTCTTCAGGTTCATCCTTCA 59.738 47.826 0.00 0.00 45.67 3.02
1254 1531 2.357637 CACCAACAAGTTCACGGTCATT 59.642 45.455 0.00 0.00 0.00 2.57
1285 1562 2.024918 CTGGCATACATCAACGGCC 58.975 57.895 0.00 0.00 44.82 6.13
1498 1787 0.037326 GGAGATCCACAACGTCAGCA 60.037 55.000 0.00 0.00 35.64 4.41
1689 1978 1.949133 TGTCAGCGACAACAGCGAC 60.949 57.895 8.59 6.35 39.78 5.19
1744 2033 0.239347 CAACTGCTCCAAAGGCTTCG 59.761 55.000 0.00 0.00 0.00 3.79
1770 2059 1.343069 ATCCTTACCTGCGAGATCCC 58.657 55.000 0.00 0.00 0.00 3.85
1819 2126 2.715336 AGAGCCTGCAATCCTTATCCAT 59.285 45.455 0.00 0.00 0.00 3.41
1869 2195 2.926778 ATCCAGAGCCTGCAATCTAC 57.073 50.000 0.00 0.00 0.00 2.59
1902 2228 3.223674 ACTTGTGGTTGGGGAAACTAG 57.776 47.619 0.00 0.00 38.92 2.57
1931 2257 4.261578 TCCCCTAACTACAAGTGTTTCG 57.738 45.455 0.00 0.00 0.00 3.46
1932 2258 3.642848 TCCCCTAACTACAAGTGTTTCGT 59.357 43.478 0.00 0.00 0.00 3.85
2141 6339 8.492748 AGTCAACAACATACACTATTTACAACG 58.507 33.333 0.00 0.00 0.00 4.10
2228 6441 8.807118 GGAACATGTGATTATCTAGTGGATCTA 58.193 37.037 0.00 0.00 35.98 1.98
2246 6459 7.757624 GTGGATCTAGTTCTCAAACTGTTAGAG 59.242 40.741 0.00 0.00 45.37 2.43
2259 6472 4.926244 ACTGTTAGAGTCATAGATGTGCG 58.074 43.478 0.00 0.00 0.00 5.34
2262 6475 2.791383 AGAGTCATAGATGTGCGCTC 57.209 50.000 9.73 5.51 0.00 5.03
2373 6614 4.394729 TGTTGGAGAAACTGTCATTACCC 58.605 43.478 0.00 0.00 39.70 3.69
2392 6633 3.512329 ACCCATTCGTTAAAATCCCCAAC 59.488 43.478 0.00 0.00 0.00 3.77
2810 7099 4.459852 AAATGGCCTGGCTGTAATCTAT 57.540 40.909 19.68 0.00 0.00 1.98
3448 7784 2.681848 GCCTCCATGACATTCTTCACAG 59.318 50.000 0.00 0.00 0.00 3.66
3607 7944 2.029918 GGATGAGAACTTTGCACCCAAC 60.030 50.000 0.00 0.00 0.00 3.77
3642 7979 3.571401 GGCATATCTAGGTTGCTTGCAAT 59.429 43.478 11.32 0.00 36.62 3.56
3677 8014 1.159713 TGCATCAATCATCGGCGACC 61.160 55.000 13.76 0.00 0.00 4.79
3724 8061 1.134965 CAAGAAGGCCTACTCACCGAG 60.135 57.143 5.16 0.00 35.52 4.63
3758 8095 2.404215 ACAGTTTCGGAGTTGTGATCG 58.596 47.619 0.00 0.00 0.00 3.69
3841 8178 3.269381 TCCTTGAAGCCCATAAGGAACAT 59.731 43.478 0.00 0.00 45.06 2.71
3843 8180 5.134339 TCCTTGAAGCCCATAAGGAACATAT 59.866 40.000 0.00 0.00 45.06 1.78
3930 8267 1.666209 GCAGGTATGGCCGTGCAATT 61.666 55.000 15.47 0.00 43.70 2.32
3978 8315 0.390860 ACGATGATGGAGGTAGCTGC 59.609 55.000 6.48 6.48 0.00 5.25
4046 8383 7.189693 TGTCACTAAGCTACATTTGACAAAG 57.810 36.000 6.77 1.89 40.18 2.77
4094 8433 1.450312 GCTGCGCTTCTATGGTGGT 60.450 57.895 9.73 0.00 0.00 4.16
4105 8444 0.104120 TATGGTGGTCGAATGCTCGG 59.896 55.000 0.00 0.00 45.49 4.63
4107 8446 1.810030 GGTGGTCGAATGCTCGGAC 60.810 63.158 0.00 0.00 45.49 4.79
4126 8465 3.365868 GGACGCTGCATTTGTAATTGTGA 60.366 43.478 0.00 0.00 0.00 3.58
4163 8502 6.937465 TGTAACCATATGTGTCAAAGCACTAA 59.063 34.615 1.24 0.00 39.89 2.24
4188 8527 7.749539 ATTTTTAGCAAATATGTAACCGTGC 57.250 32.000 0.00 0.00 0.00 5.34
4189 8528 5.881777 TTTAGCAAATATGTAACCGTGCA 57.118 34.783 0.00 0.00 34.44 4.57
4202 8541 1.269448 ACCGTGCAAAACTATTGGCTG 59.731 47.619 0.00 0.00 36.37 4.85
4221 8560 5.819379 TGGCTGCAAACAACATTTTATTTCA 59.181 32.000 0.50 0.00 0.00 2.69
4225 8564 8.735837 GCTGCAAACAACATTTTATTTCAAAAG 58.264 29.630 0.00 0.00 0.00 2.27
4235 8574 9.768662 ACATTTTATTTCAAAAGAGAGTGCAAT 57.231 25.926 0.00 0.00 0.00 3.56
4259 8598 3.023119 ACAGATCCAAACTTTGCACACA 58.977 40.909 0.00 0.00 0.00 3.72
4260 8599 3.181487 ACAGATCCAAACTTTGCACACAC 60.181 43.478 0.00 0.00 0.00 3.82
4261 8600 3.023119 AGATCCAAACTTTGCACACACA 58.977 40.909 0.00 0.00 0.00 3.72
4271 8610 6.449635 ACTTTGCACACACATCTTCTTTAA 57.550 33.333 0.00 0.00 0.00 1.52
4280 8619 9.781834 CACACACATCTTCTTTAAAAACTTGTA 57.218 29.630 0.00 0.00 0.00 2.41
4284 8623 9.796120 CACATCTTCTTTAAAAACTTGTAACCA 57.204 29.630 0.00 0.00 0.00 3.67
4291 8630 9.685828 TCTTTAAAAACTTGTAACCATATGTGC 57.314 29.630 1.24 0.00 0.00 4.57
4292 8631 8.819643 TTTAAAAACTTGTAACCATATGTGCC 57.180 30.769 1.24 0.00 0.00 5.01
4293 8632 6.412362 AAAAACTTGTAACCATATGTGCCA 57.588 33.333 1.24 0.00 0.00 4.92
4295 8634 6.412362 AAACTTGTAACCATATGTGCCAAA 57.588 33.333 1.24 0.00 0.00 3.28
4296 8635 5.385509 ACTTGTAACCATATGTGCCAAAC 57.614 39.130 1.24 0.00 0.00 2.93
4297 8636 5.076873 ACTTGTAACCATATGTGCCAAACT 58.923 37.500 1.24 0.00 0.00 2.66
4298 8637 5.048083 ACTTGTAACCATATGTGCCAAACTG 60.048 40.000 1.24 0.00 0.00 3.16
4299 8638 3.192422 TGTAACCATATGTGCCAAACTGC 59.808 43.478 1.24 0.00 0.00 4.40
4300 8639 0.810648 ACCATATGTGCCAAACTGCG 59.189 50.000 1.24 0.00 0.00 5.18
4301 8640 1.093972 CCATATGTGCCAAACTGCGA 58.906 50.000 1.24 0.00 0.00 5.10
4302 8641 1.677576 CCATATGTGCCAAACTGCGAT 59.322 47.619 1.24 0.00 0.00 4.58
4303 8642 2.542205 CCATATGTGCCAAACTGCGATG 60.542 50.000 1.24 0.00 0.00 3.84
4304 8643 1.819928 TATGTGCCAAACTGCGATGT 58.180 45.000 0.00 0.00 0.00 3.06
4305 8644 0.961019 ATGTGCCAAACTGCGATGTT 59.039 45.000 0.00 0.00 0.00 2.71
4306 8645 0.030504 TGTGCCAAACTGCGATGTTG 59.969 50.000 0.00 0.00 0.00 3.33
4307 8646 0.030638 GTGCCAAACTGCGATGTTGT 59.969 50.000 0.00 0.00 0.00 3.32
4308 8647 0.743688 TGCCAAACTGCGATGTTGTT 59.256 45.000 0.00 0.00 0.00 2.83
4309 8648 1.268999 TGCCAAACTGCGATGTTGTTC 60.269 47.619 0.00 0.00 0.00 3.18
4310 8649 1.001378 GCCAAACTGCGATGTTGTTCT 60.001 47.619 0.00 0.00 0.00 3.01
4311 8650 2.653890 CCAAACTGCGATGTTGTTCTG 58.346 47.619 0.00 0.00 0.00 3.02
4312 8651 2.033299 CCAAACTGCGATGTTGTTCTGT 59.967 45.455 0.00 0.00 0.00 3.41
4313 8652 3.249799 CCAAACTGCGATGTTGTTCTGTA 59.750 43.478 0.00 0.00 0.00 2.74
4314 8653 4.457810 CAAACTGCGATGTTGTTCTGTAG 58.542 43.478 0.00 0.00 0.00 2.74
4315 8654 3.660501 ACTGCGATGTTGTTCTGTAGA 57.339 42.857 0.00 0.00 0.00 2.59
4316 8655 4.193826 ACTGCGATGTTGTTCTGTAGAT 57.806 40.909 0.00 0.00 0.00 1.98
4317 8656 5.324784 ACTGCGATGTTGTTCTGTAGATA 57.675 39.130 0.00 0.00 0.00 1.98
4318 8657 5.907207 ACTGCGATGTTGTTCTGTAGATAT 58.093 37.500 0.00 0.00 0.00 1.63
4319 8658 6.341316 ACTGCGATGTTGTTCTGTAGATATT 58.659 36.000 0.00 0.00 0.00 1.28
4320 8659 7.489160 ACTGCGATGTTGTTCTGTAGATATTA 58.511 34.615 0.00 0.00 0.00 0.98
4321 8660 8.144478 ACTGCGATGTTGTTCTGTAGATATTAT 58.856 33.333 0.00 0.00 0.00 1.28
4322 8661 9.626045 CTGCGATGTTGTTCTGTAGATATTATA 57.374 33.333 0.00 0.00 0.00 0.98
4323 8662 9.406828 TGCGATGTTGTTCTGTAGATATTATAC 57.593 33.333 0.00 0.00 0.00 1.47
4324 8663 8.576281 GCGATGTTGTTCTGTAGATATTATACG 58.424 37.037 0.00 0.00 0.00 3.06
4325 8664 8.576281 CGATGTTGTTCTGTAGATATTATACGC 58.424 37.037 0.00 0.00 0.00 4.42
4326 8665 8.758633 ATGTTGTTCTGTAGATATTATACGCC 57.241 34.615 0.00 0.00 0.00 5.68
4327 8666 7.149973 TGTTGTTCTGTAGATATTATACGCCC 58.850 38.462 0.00 0.00 0.00 6.13
4328 8667 6.904463 TGTTCTGTAGATATTATACGCCCA 57.096 37.500 0.00 0.00 0.00 5.36
4329 8668 6.920817 TGTTCTGTAGATATTATACGCCCAG 58.079 40.000 0.00 0.00 0.00 4.45
4330 8669 6.492429 TGTTCTGTAGATATTATACGCCCAGT 59.508 38.462 0.00 0.00 0.00 4.00
4331 8670 6.510879 TCTGTAGATATTATACGCCCAGTG 57.489 41.667 0.00 0.00 0.00 3.66
4332 8671 5.417894 TCTGTAGATATTATACGCCCAGTGG 59.582 44.000 0.63 0.63 0.00 4.00
4333 8672 5.326900 TGTAGATATTATACGCCCAGTGGA 58.673 41.667 11.95 0.00 0.00 4.02
4334 8673 4.803098 AGATATTATACGCCCAGTGGAC 57.197 45.455 11.95 0.00 0.00 4.02
4335 8674 4.417437 AGATATTATACGCCCAGTGGACT 58.583 43.478 11.95 0.00 0.00 3.85
4336 8675 4.838986 AGATATTATACGCCCAGTGGACTT 59.161 41.667 11.95 0.00 0.00 3.01
4337 8676 2.684001 TTATACGCCCAGTGGACTTG 57.316 50.000 11.95 0.00 0.00 3.16
4338 8677 0.828022 TATACGCCCAGTGGACTTGG 59.172 55.000 11.95 0.00 32.30 3.61
4339 8678 1.198759 ATACGCCCAGTGGACTTGGT 61.199 55.000 11.95 3.36 31.81 3.67
4340 8679 1.823169 TACGCCCAGTGGACTTGGTC 61.823 60.000 11.95 0.00 31.81 4.02
4341 8680 2.836154 GCCCAGTGGACTTGGTCA 59.164 61.111 11.95 0.00 33.68 4.02
4342 8681 1.600916 GCCCAGTGGACTTGGTCAC 60.601 63.158 11.95 0.00 33.68 3.67
4343 8682 1.301716 CCCAGTGGACTTGGTCACG 60.302 63.158 11.95 0.00 33.68 4.35
4344 8683 1.745890 CCAGTGGACTTGGTCACGA 59.254 57.895 1.68 0.00 33.68 4.35
4406 8747 9.543783 GAGATTATATGCATGCATCATCTTCTA 57.456 33.333 35.35 16.74 37.82 2.10
4418 8771 5.236047 GCATCATCTTCTACTAAAGTGCAGG 59.764 44.000 0.00 0.00 29.63 4.85
4426 8779 3.710209 ACTAAAGTGCAGGAGCTTGAT 57.290 42.857 0.00 0.00 42.74 2.57
4429 8782 1.531423 AAGTGCAGGAGCTTGATGTG 58.469 50.000 0.00 0.00 42.74 3.21
4430 8783 0.399454 AGTGCAGGAGCTTGATGTGT 59.601 50.000 0.00 0.00 42.74 3.72
4444 8797 2.230508 TGATGTGTAGACTTGGGTCGTC 59.769 50.000 0.00 0.00 46.29 4.20
4445 8798 0.594602 TGTGTAGACTTGGGTCGTCG 59.405 55.000 0.00 0.00 46.29 5.12
4447 8800 0.538057 TGTAGACTTGGGTCGTCGGT 60.538 55.000 0.00 0.00 46.29 4.69
4458 8811 1.374125 TCGTCGGTCTTGGCACATG 60.374 57.895 0.00 0.00 39.30 3.21
4462 8815 2.570181 GGTCTTGGCACATGCAGC 59.430 61.111 6.15 2.28 44.36 5.25
4475 8828 1.067364 CATGCAGCAACACCACTTCAA 59.933 47.619 0.00 0.00 0.00 2.69
4476 8829 0.455410 TGCAGCAACACCACTTCAAC 59.545 50.000 0.00 0.00 0.00 3.18
4477 8830 0.740737 GCAGCAACACCACTTCAACT 59.259 50.000 0.00 0.00 0.00 3.16
4478 8831 1.134946 GCAGCAACACCACTTCAACTT 59.865 47.619 0.00 0.00 0.00 2.66
4479 8832 2.801063 CAGCAACACCACTTCAACTTG 58.199 47.619 0.00 0.00 0.00 3.16
4480 8833 2.164219 CAGCAACACCACTTCAACTTGT 59.836 45.455 0.00 0.00 0.00 3.16
4481 8834 2.164219 AGCAACACCACTTCAACTTGTG 59.836 45.455 0.00 0.00 0.00 3.33
4482 8835 2.529151 CAACACCACTTCAACTTGTGC 58.471 47.619 0.00 0.00 33.26 4.57
4483 8836 2.128771 ACACCACTTCAACTTGTGCT 57.871 45.000 0.00 0.00 33.26 4.40
4484 8837 1.745087 ACACCACTTCAACTTGTGCTG 59.255 47.619 0.00 0.00 33.26 4.41
4485 8838 0.740737 ACCACTTCAACTTGTGCTGC 59.259 50.000 0.00 0.00 33.26 5.25
4486 8839 0.740149 CCACTTCAACTTGTGCTGCA 59.260 50.000 0.00 0.00 33.26 4.41
4487 8840 1.268896 CCACTTCAACTTGTGCTGCAG 60.269 52.381 10.11 10.11 33.26 4.41
4488 8841 0.383231 ACTTCAACTTGTGCTGCAGC 59.617 50.000 31.89 31.89 42.50 5.25
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.145900 TGGGGAAGAAATGGCCTCCA 61.146 55.000 3.32 0.00 38.19 3.86
27 28 0.891373 GGCAGTGTAGAGACAGCAGA 59.109 55.000 0.00 0.00 35.82 4.26
30 31 1.674221 CCAAGGCAGTGTAGAGACAGC 60.674 57.143 0.00 0.00 35.82 4.40
33 34 2.417719 CAACCAAGGCAGTGTAGAGAC 58.582 52.381 0.00 0.00 0.00 3.36
83 84 1.592064 ATTTTGGGCAAACAAAGGCG 58.408 45.000 0.00 0.00 40.97 5.52
85 86 5.466393 CAGAGTTATTTTGGGCAAACAAAGG 59.534 40.000 0.00 0.00 40.97 3.11
98 99 6.600882 TCGGAAGGAGTACAGAGTTATTTT 57.399 37.500 0.00 0.00 0.00 1.82
102 103 4.205587 GGATCGGAAGGAGTACAGAGTTA 58.794 47.826 0.00 0.00 0.00 2.24
176 177 4.511454 TCTGAGCCATATTAATTGACGCAC 59.489 41.667 0.00 0.00 0.00 5.34
194 195 3.442977 CCAAAAGAATTGCTCCCTCTGAG 59.557 47.826 0.00 0.00 44.47 3.35
197 198 2.174360 GCCAAAAGAATTGCTCCCTCT 58.826 47.619 0.00 0.00 0.00 3.69
437 438 7.074653 AGTCCAACCAGATTTTAGACAAGTA 57.925 36.000 0.00 0.00 0.00 2.24
444 452 3.826157 TGGCAAGTCCAACCAGATTTTAG 59.174 43.478 0.00 0.00 43.21 1.85
445 453 3.838565 TGGCAAGTCCAACCAGATTTTA 58.161 40.909 0.00 0.00 43.21 1.52
446 454 2.676748 TGGCAAGTCCAACCAGATTTT 58.323 42.857 0.00 0.00 43.21 1.82
447 455 2.380064 TGGCAAGTCCAACCAGATTT 57.620 45.000 0.00 0.00 43.21 2.17
476 491 3.907474 TCAAGAAGGAACCACCACTCATA 59.093 43.478 0.00 0.00 42.04 2.15
500 515 1.375523 AAGGCTCCAAGGTAACGCG 60.376 57.895 3.53 3.53 46.39 6.01
615 640 2.364972 ATTGCCTTACATACAGGGGC 57.635 50.000 0.00 0.00 42.73 5.80
621 646 8.661352 AATGCCAAATAAATTGCCTTACATAC 57.339 30.769 0.00 0.00 37.73 2.39
742 803 5.640189 TTCTTTACAGAGGGAGTAGTTCG 57.360 43.478 0.00 0.00 0.00 3.95
1029 1303 0.382873 CACCATCATCAATGCCGGTG 59.617 55.000 1.90 13.04 40.71 4.94
1133 1410 5.878116 GTGGTGGTGTTGTAGCAATAATAGA 59.122 40.000 0.00 0.00 38.75 1.98
1160 1437 2.630889 ACCTGAAGAGTCCATCTCCA 57.369 50.000 0.00 0.00 43.71 3.86
1178 1455 1.457346 CAGCCACCTGAAGGATGAAC 58.543 55.000 2.62 0.00 45.12 3.18
1179 1456 0.329261 CCAGCCACCTGAAGGATGAA 59.671 55.000 2.62 0.00 45.12 2.57
1181 1458 0.393537 GTCCAGCCACCTGAAGGATG 60.394 60.000 2.62 0.00 41.77 3.51
1182 1459 0.548682 AGTCCAGCCACCTGAAGGAT 60.549 55.000 2.62 0.00 41.77 3.24
1183 1460 0.768221 AAGTCCAGCCACCTGAAGGA 60.768 55.000 2.62 0.00 41.77 3.36
1184 1461 0.322008 GAAGTCCAGCCACCTGAAGG 60.322 60.000 0.00 0.00 41.77 3.46
1185 1462 0.671781 CGAAGTCCAGCCACCTGAAG 60.672 60.000 0.00 0.00 41.77 3.02
1186 1463 1.371183 CGAAGTCCAGCCACCTGAA 59.629 57.895 0.00 0.00 41.77 3.02
1187 1464 3.059982 CGAAGTCCAGCCACCTGA 58.940 61.111 0.00 0.00 41.77 3.86
1188 1465 2.743928 GCGAAGTCCAGCCACCTG 60.744 66.667 0.00 0.00 38.85 4.00
1189 1466 4.379243 CGCGAAGTCCAGCCACCT 62.379 66.667 0.00 0.00 0.00 4.00
1232 1509 1.066071 TGACCGTGAACTTGTTGGTGA 60.066 47.619 0.00 0.00 31.86 4.02
1295 1575 4.596180 CGCCATCATCGCCGTTGC 62.596 66.667 0.00 0.00 0.00 4.17
1297 1577 0.249699 TAATCGCCATCATCGCCGTT 60.250 50.000 0.00 0.00 0.00 4.44
1574 1863 1.079681 TGGCCGCCGTAGTTGTTAG 60.080 57.895 4.58 0.00 0.00 2.34
1689 1978 1.129998 CCATTGAGCGAGTTGAAGCAG 59.870 52.381 0.00 0.00 35.48 4.24
1869 2195 2.236395 ACCACAAGTATTTCGGAGGGAG 59.764 50.000 0.00 0.00 0.00 4.30
1902 2228 5.930569 CACTTGTAGTTAGGGGAACTTGTAC 59.069 44.000 0.00 0.00 46.79 2.90
2063 5945 6.312399 TGTTCTACGATTTGCAGTTGAAAT 57.688 33.333 3.08 0.00 34.89 2.17
2228 6441 8.410673 TCTATGACTCTAACAGTTTGAGAACT 57.589 34.615 25.77 13.95 46.85 3.01
2246 6459 2.064762 GGATGAGCGCACATCTATGAC 58.935 52.381 35.57 21.25 44.02 3.06
2350 6567 5.010282 GGGTAATGACAGTTTCTCCAACAT 58.990 41.667 0.00 0.00 37.93 2.71
2373 6614 5.385509 ACAGTTGGGGATTTTAACGAATG 57.614 39.130 0.00 0.00 0.00 2.67
2810 7099 5.762179 AGACAAGGAAATCATGTAGGTCA 57.238 39.130 0.00 0.00 0.00 4.02
3169 7505 2.234908 AGAAATGACTTGAGGTCCTCCG 59.765 50.000 16.60 9.78 43.89 4.63
3214 7550 6.453926 TGTAAACTTTACCAAAGGAACCAC 57.546 37.500 8.85 0.00 42.82 4.16
3398 7734 5.777449 TGGGAGATAAACTCATAGACCAGA 58.223 41.667 0.00 0.00 46.54 3.86
3448 7784 3.253188 TGAGAGCACCTTGTTATTGTTGC 59.747 43.478 0.00 0.00 0.00 4.17
3607 7944 6.769822 ACCTAGATATGCCAAAGTCTGAAATG 59.230 38.462 0.00 0.00 0.00 2.32
3642 7979 4.195416 TGATGCAGTGTGTTGTTTGTCTA 58.805 39.130 0.00 0.00 0.00 2.59
3701 8038 2.232941 CGGTGAGTAGGCCTTCTTGTAA 59.767 50.000 12.58 0.00 0.00 2.41
3724 8061 5.694910 TCCGAAACTGTAGACATCACTTTTC 59.305 40.000 0.00 0.00 0.00 2.29
3811 8148 2.306847 TGGGCTTCAAGGAAACACTTC 58.693 47.619 0.00 0.00 0.00 3.01
3902 8239 2.094494 CGGCCATACCTGCTAGACTATG 60.094 54.545 2.24 0.00 35.61 2.23
3978 8315 1.457303 GACTCAGTTTGTGTAGCTGCG 59.543 52.381 0.00 0.00 0.00 5.18
4046 8383 1.971695 CACGGAACCAAAGGAGGGC 60.972 63.158 0.00 0.00 0.00 5.19
4080 8419 1.860950 CATTCGACCACCATAGAAGCG 59.139 52.381 0.00 0.00 0.00 4.68
4105 8444 3.820689 TCACAATTACAAATGCAGCGTC 58.179 40.909 0.00 0.00 0.00 5.19
4107 8446 5.097529 AGAATCACAATTACAAATGCAGCG 58.902 37.500 0.00 0.00 0.00 5.18
4148 8487 7.261325 TGCTAAAAATTTAGTGCTTTGACACA 58.739 30.769 12.99 0.00 43.23 3.72
4149 8488 7.692908 TGCTAAAAATTTAGTGCTTTGACAC 57.307 32.000 12.99 0.00 41.63 3.67
4163 8502 7.815068 TGCACGGTTACATATTTGCTAAAAATT 59.185 29.630 0.00 0.00 0.00 1.82
4171 8510 4.920927 AGTTTTGCACGGTTACATATTTGC 59.079 37.500 0.00 0.00 0.00 3.68
4188 8527 4.569966 TGTTGTTTGCAGCCAATAGTTTTG 59.430 37.500 3.79 0.00 0.00 2.44
4189 8528 4.764172 TGTTGTTTGCAGCCAATAGTTTT 58.236 34.783 3.79 0.00 0.00 2.43
4221 8560 6.716628 TGGATCTGTTTATTGCACTCTCTTTT 59.283 34.615 0.00 0.00 0.00 2.27
4225 8564 6.150140 AGTTTGGATCTGTTTATTGCACTCTC 59.850 38.462 0.00 0.00 0.00 3.20
4235 8574 5.126222 TGTGTGCAAAGTTTGGATCTGTTTA 59.874 36.000 17.11 0.00 32.24 2.01
4271 8610 6.412362 TTGGCACATATGGTTACAAGTTTT 57.588 33.333 7.80 0.00 39.30 2.43
4280 8619 1.202114 CGCAGTTTGGCACATATGGTT 59.798 47.619 7.80 0.00 39.30 3.67
4281 8620 0.810648 CGCAGTTTGGCACATATGGT 59.189 50.000 7.80 0.00 39.30 3.55
4282 8621 1.093972 TCGCAGTTTGGCACATATGG 58.906 50.000 7.80 0.00 39.30 2.74
4284 8623 2.368439 ACATCGCAGTTTGGCACATAT 58.632 42.857 0.00 0.00 39.30 1.78
4285 8624 1.819928 ACATCGCAGTTTGGCACATA 58.180 45.000 0.00 0.00 39.30 2.29
4286 8625 0.961019 AACATCGCAGTTTGGCACAT 59.039 45.000 0.00 0.00 39.30 3.21
4287 8626 0.030504 CAACATCGCAGTTTGGCACA 59.969 50.000 0.00 0.00 0.00 4.57
4289 8628 0.743688 AACAACATCGCAGTTTGGCA 59.256 45.000 0.00 0.00 0.00 4.92
4291 8630 2.033299 ACAGAACAACATCGCAGTTTGG 59.967 45.455 0.00 0.00 0.00 3.28
4292 8631 3.338818 ACAGAACAACATCGCAGTTTG 57.661 42.857 0.00 0.00 0.00 2.93
4293 8632 4.377021 TCTACAGAACAACATCGCAGTTT 58.623 39.130 0.00 0.00 0.00 2.66
4295 8634 3.660501 TCTACAGAACAACATCGCAGT 57.339 42.857 0.00 0.00 0.00 4.40
4296 8635 6.834959 AATATCTACAGAACAACATCGCAG 57.165 37.500 0.00 0.00 0.00 5.18
4297 8636 9.406828 GTATAATATCTACAGAACAACATCGCA 57.593 33.333 0.00 0.00 0.00 5.10
4298 8637 8.576281 CGTATAATATCTACAGAACAACATCGC 58.424 37.037 0.00 0.00 0.00 4.58
4299 8638 8.576281 GCGTATAATATCTACAGAACAACATCG 58.424 37.037 0.00 0.00 0.00 3.84
4300 8639 8.861101 GGCGTATAATATCTACAGAACAACATC 58.139 37.037 0.00 0.00 0.00 3.06
4301 8640 7.817962 GGGCGTATAATATCTACAGAACAACAT 59.182 37.037 0.00 0.00 0.00 2.71
4302 8641 7.149973 GGGCGTATAATATCTACAGAACAACA 58.850 38.462 0.00 0.00 0.00 3.33
4303 8642 7.149973 TGGGCGTATAATATCTACAGAACAAC 58.850 38.462 0.00 0.00 0.00 3.32
4304 8643 7.014905 ACTGGGCGTATAATATCTACAGAACAA 59.985 37.037 0.00 0.00 0.00 2.83
4305 8644 6.492429 ACTGGGCGTATAATATCTACAGAACA 59.508 38.462 0.00 0.00 0.00 3.18
4306 8645 6.807230 CACTGGGCGTATAATATCTACAGAAC 59.193 42.308 0.00 0.00 0.00 3.01
4307 8646 6.071560 CCACTGGGCGTATAATATCTACAGAA 60.072 42.308 0.00 0.00 0.00 3.02
4308 8647 5.417894 CCACTGGGCGTATAATATCTACAGA 59.582 44.000 0.00 0.00 0.00 3.41
4309 8648 5.417894 TCCACTGGGCGTATAATATCTACAG 59.582 44.000 0.00 0.00 0.00 2.74
4310 8649 5.184479 GTCCACTGGGCGTATAATATCTACA 59.816 44.000 0.00 0.00 0.00 2.74
4311 8650 5.418209 AGTCCACTGGGCGTATAATATCTAC 59.582 44.000 0.00 0.00 0.00 2.59
4312 8651 5.577100 AGTCCACTGGGCGTATAATATCTA 58.423 41.667 0.00 0.00 0.00 1.98
4313 8652 4.417437 AGTCCACTGGGCGTATAATATCT 58.583 43.478 0.00 0.00 0.00 1.98
4314 8653 4.803098 AGTCCACTGGGCGTATAATATC 57.197 45.455 0.00 0.00 0.00 1.63
4315 8654 4.262894 CCAAGTCCACTGGGCGTATAATAT 60.263 45.833 0.00 0.00 28.64 1.28
4316 8655 3.070446 CCAAGTCCACTGGGCGTATAATA 59.930 47.826 0.00 0.00 28.64 0.98
4317 8656 2.158813 CCAAGTCCACTGGGCGTATAAT 60.159 50.000 0.00 0.00 28.64 1.28
4318 8657 1.208535 CCAAGTCCACTGGGCGTATAA 59.791 52.381 0.00 0.00 28.64 0.98
4319 8658 0.828022 CCAAGTCCACTGGGCGTATA 59.172 55.000 0.00 0.00 28.64 1.47
4320 8659 1.198759 ACCAAGTCCACTGGGCGTAT 61.199 55.000 0.00 0.00 40.92 3.06
4321 8660 1.823169 GACCAAGTCCACTGGGCGTA 61.823 60.000 0.00 0.00 40.92 4.42
4322 8661 3.168528 ACCAAGTCCACTGGGCGT 61.169 61.111 0.00 0.00 40.92 5.68
4323 8662 2.358737 GACCAAGTCCACTGGGCG 60.359 66.667 0.00 0.00 40.92 6.13
4324 8663 1.600916 GTGACCAAGTCCACTGGGC 60.601 63.158 0.00 0.00 40.92 5.36
4325 8664 1.301716 CGTGACCAAGTCCACTGGG 60.302 63.158 0.00 0.00 42.98 4.45
4326 8665 0.600255 GTCGTGACCAAGTCCACTGG 60.600 60.000 0.00 0.00 0.00 4.00
4327 8666 0.389391 AGTCGTGACCAAGTCCACTG 59.611 55.000 0.00 0.00 0.00 3.66
4328 8667 1.120530 AAGTCGTGACCAAGTCCACT 58.879 50.000 0.00 0.00 0.00 4.00
4329 8668 1.217882 CAAGTCGTGACCAAGTCCAC 58.782 55.000 0.00 0.00 0.00 4.02
4330 8669 0.828022 ACAAGTCGTGACCAAGTCCA 59.172 50.000 0.00 0.00 0.00 4.02
4331 8670 1.068741 AGACAAGTCGTGACCAAGTCC 59.931 52.381 11.19 0.00 31.49 3.85
4332 8671 2.510768 AGACAAGTCGTGACCAAGTC 57.489 50.000 0.00 3.15 34.09 3.01
4333 8672 4.038763 TGATTAGACAAGTCGTGACCAAGT 59.961 41.667 0.00 0.00 34.09 3.16
4334 8673 4.556233 TGATTAGACAAGTCGTGACCAAG 58.444 43.478 0.00 0.00 34.09 3.61
4335 8674 4.594123 TGATTAGACAAGTCGTGACCAA 57.406 40.909 0.00 0.00 34.09 3.67
4336 8675 4.279922 TCTTGATTAGACAAGTCGTGACCA 59.720 41.667 0.00 0.00 44.96 4.02
4337 8676 4.806330 TCTTGATTAGACAAGTCGTGACC 58.194 43.478 0.00 0.00 44.96 4.02
4338 8677 5.700846 TCTCTTGATTAGACAAGTCGTGAC 58.299 41.667 0.00 0.00 44.96 3.67
4339 8678 5.959618 TCTCTTGATTAGACAAGTCGTGA 57.040 39.130 0.00 0.00 44.96 4.35
4340 8679 5.005203 GCATCTCTTGATTAGACAAGTCGTG 59.995 44.000 0.00 0.00 44.96 4.35
4341 8680 5.105554 AGCATCTCTTGATTAGACAAGTCGT 60.106 40.000 0.00 0.00 44.96 4.34
4342 8681 5.231779 CAGCATCTCTTGATTAGACAAGTCG 59.768 44.000 0.00 0.00 44.96 4.18
4343 8682 6.105333 ACAGCATCTCTTGATTAGACAAGTC 58.895 40.000 0.00 0.00 44.96 3.01
4344 8683 6.047511 ACAGCATCTCTTGATTAGACAAGT 57.952 37.500 0.00 0.00 44.96 3.16
4406 8747 3.244700 ACATCAAGCTCCTGCACTTTAGT 60.245 43.478 0.00 0.00 42.74 2.24
4418 8771 3.265791 CCCAAGTCTACACATCAAGCTC 58.734 50.000 0.00 0.00 0.00 4.09
4426 8779 0.594602 CGACGACCCAAGTCTACACA 59.405 55.000 0.00 0.00 41.16 3.72
4429 8782 0.169894 GACCGACGACCCAAGTCTAC 59.830 60.000 0.00 0.00 41.16 2.59
4430 8783 0.037303 AGACCGACGACCCAAGTCTA 59.963 55.000 0.00 0.00 41.16 2.59
4444 8797 2.872557 CTGCATGTGCCAAGACCG 59.127 61.111 2.07 0.00 41.18 4.79
4445 8798 1.808531 TTGCTGCATGTGCCAAGACC 61.809 55.000 1.84 0.00 41.18 3.85
4447 8800 1.108132 TGTTGCTGCATGTGCCAAGA 61.108 50.000 1.84 0.00 41.18 3.02
4458 8811 0.740737 AGTTGAAGTGGTGTTGCTGC 59.259 50.000 0.00 0.00 0.00 5.25
4462 8815 2.164219 AGCACAAGTTGAAGTGGTGTTG 59.836 45.455 10.54 0.00 43.96 3.33


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.