Multiple sequence alignment - TraesCS6D01G001800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G001800 chr6D 100.000 2561 0 0 1 2561 944991 942431 0.000000e+00 4730.0
1 TraesCS6D01G001800 chr6D 96.970 33 1 0 71 103 973568 973536 3.560000e-04 56.5
2 TraesCS6D01G001800 chr1B 93.584 2151 111 18 421 2561 643042378 643040245 0.000000e+00 3182.0
3 TraesCS6D01G001800 chr2B 93.499 2138 122 11 422 2546 206292618 206294751 0.000000e+00 3162.0
4 TraesCS6D01G001800 chr1A 93.172 2153 122 16 425 2561 510460015 510457872 0.000000e+00 3138.0
5 TraesCS6D01G001800 chr1D 93.049 2158 118 19 418 2561 254795370 254797509 0.000000e+00 3125.0
6 TraesCS6D01G001800 chr2D 92.781 2147 126 16 425 2561 16250582 16248455 0.000000e+00 3079.0
7 TraesCS6D01G001800 chr7D 92.479 2154 138 15 425 2561 126988444 126990590 0.000000e+00 3059.0
8 TraesCS6D01G001800 chr7D 92.019 2155 149 14 416 2561 207197760 207199900 0.000000e+00 3005.0
9 TraesCS6D01G001800 chr7B 91.814 2150 156 13 425 2560 549934407 549932264 0.000000e+00 2977.0
10 TraesCS6D01G001800 chr4B 91.640 2153 155 15 425 2561 671183087 671185230 0.000000e+00 2955.0
11 TraesCS6D01G001800 chr4B 87.845 362 23 9 39 384 671835986 671836342 3.070000e-109 405.0
12 TraesCS6D01G001800 chr4B 100.000 28 0 0 71 98 671830908 671830935 5.000000e-03 52.8
13 TraesCS6D01G001800 chrUn 79.487 195 15 17 120 294 100217560 100217371 5.790000e-22 115.0
14 TraesCS6D01G001800 chr5A 100.000 30 0 0 71 100 697622631 697622660 3.560000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G001800 chr6D 942431 944991 2560 True 4730 4730 100.000 1 2561 1 chr6D.!!$R1 2560
1 TraesCS6D01G001800 chr1B 643040245 643042378 2133 True 3182 3182 93.584 421 2561 1 chr1B.!!$R1 2140
2 TraesCS6D01G001800 chr2B 206292618 206294751 2133 False 3162 3162 93.499 422 2546 1 chr2B.!!$F1 2124
3 TraesCS6D01G001800 chr1A 510457872 510460015 2143 True 3138 3138 93.172 425 2561 1 chr1A.!!$R1 2136
4 TraesCS6D01G001800 chr1D 254795370 254797509 2139 False 3125 3125 93.049 418 2561 1 chr1D.!!$F1 2143
5 TraesCS6D01G001800 chr2D 16248455 16250582 2127 True 3079 3079 92.781 425 2561 1 chr2D.!!$R1 2136
6 TraesCS6D01G001800 chr7D 126988444 126990590 2146 False 3059 3059 92.479 425 2561 1 chr7D.!!$F1 2136
7 TraesCS6D01G001800 chr7D 207197760 207199900 2140 False 3005 3005 92.019 416 2561 1 chr7D.!!$F2 2145
8 TraesCS6D01G001800 chr7B 549932264 549934407 2143 True 2977 2977 91.814 425 2560 1 chr7B.!!$R1 2135
9 TraesCS6D01G001800 chr4B 671183087 671185230 2143 False 2955 2955 91.640 425 2561 1 chr4B.!!$F1 2136

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
204 205 0.02877 GCATACGCAATTTAGCCGCA 59.971 50.0 0.0 0.0 38.36 5.69 F
258 259 0.03601 CCCTACGGATGGATGGATGC 60.036 60.0 0.0 0.0 0.00 3.91 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1457 1484 0.744771 GCGAATCTTGGGTGGAGTCC 60.745 60.000 0.73 0.73 0.0 3.85 R
1665 1698 1.002544 GCTTGTGTAGTGCTTCCTCCT 59.997 52.381 0.00 0.00 0.0 3.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 2.291856 CAGGTCCAGGTCTCTTCCC 58.708 63.158 0.00 0.00 0.00 3.97
19 20 1.305381 AGGTCCAGGTCTCTTCCCG 60.305 63.158 0.00 0.00 0.00 5.14
20 21 2.579738 GTCCAGGTCTCTTCCCGC 59.420 66.667 0.00 0.00 0.00 6.13
21 22 2.119611 TCCAGGTCTCTTCCCGCA 59.880 61.111 0.00 0.00 0.00 5.69
22 23 1.306141 TCCAGGTCTCTTCCCGCAT 60.306 57.895 0.00 0.00 0.00 4.73
23 24 1.144936 CCAGGTCTCTTCCCGCATC 59.855 63.158 0.00 0.00 0.00 3.91
24 25 1.227089 CAGGTCTCTTCCCGCATCG 60.227 63.158 0.00 0.00 0.00 3.84
25 26 1.379977 AGGTCTCTTCCCGCATCGA 60.380 57.895 0.00 0.00 0.00 3.59
26 27 0.757188 AGGTCTCTTCCCGCATCGAT 60.757 55.000 0.00 0.00 0.00 3.59
27 28 0.598680 GGTCTCTTCCCGCATCGATG 60.599 60.000 21.27 21.27 0.00 3.84
28 29 0.598680 GTCTCTTCCCGCATCGATGG 60.599 60.000 26.00 15.70 0.00 3.51
29 30 0.755327 TCTCTTCCCGCATCGATGGA 60.755 55.000 26.00 12.92 0.00 3.41
30 31 0.319728 CTCTTCCCGCATCGATGGAT 59.680 55.000 26.00 0.00 0.00 3.41
31 32 0.318441 TCTTCCCGCATCGATGGATC 59.682 55.000 26.00 9.30 0.00 3.36
32 33 0.671781 CTTCCCGCATCGATGGATCC 60.672 60.000 26.00 4.20 0.00 3.36
33 34 1.406860 TTCCCGCATCGATGGATCCA 61.407 55.000 26.00 18.88 0.00 3.41
34 35 1.194121 TCCCGCATCGATGGATCCAT 61.194 55.000 27.66 27.66 39.69 3.41
35 36 0.742281 CCCGCATCGATGGATCCATC 60.742 60.000 35.76 35.76 46.71 3.51
47 48 4.879197 TGGATCCATCATGTAGCTGTAG 57.121 45.455 11.44 0.00 0.00 2.74
48 49 3.580022 TGGATCCATCATGTAGCTGTAGG 59.420 47.826 11.44 0.00 0.00 3.18
49 50 3.834813 GGATCCATCATGTAGCTGTAGGA 59.165 47.826 6.95 0.00 0.00 2.94
50 51 4.081752 GGATCCATCATGTAGCTGTAGGAG 60.082 50.000 6.95 0.00 0.00 3.69
51 52 3.916035 TCCATCATGTAGCTGTAGGAGT 58.084 45.455 0.00 0.00 0.00 3.85
52 53 3.638627 TCCATCATGTAGCTGTAGGAGTG 59.361 47.826 0.00 0.00 0.00 3.51
53 54 3.386078 CCATCATGTAGCTGTAGGAGTGT 59.614 47.826 0.00 0.00 0.00 3.55
54 55 4.584743 CCATCATGTAGCTGTAGGAGTGTA 59.415 45.833 0.00 0.00 0.00 2.90
55 56 5.278709 CCATCATGTAGCTGTAGGAGTGTAG 60.279 48.000 0.00 0.00 0.00 2.74
56 57 4.207955 TCATGTAGCTGTAGGAGTGTAGG 58.792 47.826 0.00 0.00 0.00 3.18
57 58 4.079958 TCATGTAGCTGTAGGAGTGTAGGA 60.080 45.833 0.00 0.00 0.00 2.94
58 59 3.618351 TGTAGCTGTAGGAGTGTAGGAC 58.382 50.000 0.00 0.00 0.00 3.85
59 60 2.901338 AGCTGTAGGAGTGTAGGACA 57.099 50.000 0.00 0.00 0.00 4.02
60 61 2.729194 AGCTGTAGGAGTGTAGGACAG 58.271 52.381 0.00 0.00 40.39 3.51
61 62 2.041891 AGCTGTAGGAGTGTAGGACAGT 59.958 50.000 0.00 0.00 39.75 3.55
62 63 2.164624 GCTGTAGGAGTGTAGGACAGTG 59.835 54.545 0.00 0.00 39.75 3.66
63 64 2.164624 CTGTAGGAGTGTAGGACAGTGC 59.835 54.545 0.00 0.00 39.76 4.40
64 65 2.168496 GTAGGAGTGTAGGACAGTGCA 58.832 52.381 8.40 0.00 41.60 4.57
65 66 1.261480 AGGAGTGTAGGACAGTGCAG 58.739 55.000 8.40 0.00 41.60 4.41
66 67 0.969894 GGAGTGTAGGACAGTGCAGT 59.030 55.000 0.00 0.00 39.34 4.40
67 68 1.344763 GGAGTGTAGGACAGTGCAGTT 59.655 52.381 0.00 0.00 39.34 3.16
68 69 2.224305 GGAGTGTAGGACAGTGCAGTTT 60.224 50.000 0.00 0.00 39.34 2.66
69 70 2.802816 GAGTGTAGGACAGTGCAGTTTG 59.197 50.000 0.00 0.00 30.64 2.93
70 71 1.873591 GTGTAGGACAGTGCAGTTTGG 59.126 52.381 0.00 0.00 0.00 3.28
71 72 1.488812 TGTAGGACAGTGCAGTTTGGT 59.511 47.619 0.00 0.00 0.00 3.67
72 73 1.873591 GTAGGACAGTGCAGTTTGGTG 59.126 52.381 0.00 0.00 0.00 4.17
73 74 1.103398 AGGACAGTGCAGTTTGGTGC 61.103 55.000 0.00 0.00 44.27 5.01
74 75 1.360192 GACAGTGCAGTTTGGTGCC 59.640 57.895 0.00 0.00 43.28 5.01
75 76 2.332514 CAGTGCAGTTTGGTGCCG 59.667 61.111 0.00 0.00 43.28 5.69
76 77 2.124320 AGTGCAGTTTGGTGCCGT 60.124 55.556 0.00 0.00 43.28 5.68
77 78 2.026014 GTGCAGTTTGGTGCCGTG 59.974 61.111 0.00 0.00 43.28 4.94
78 79 3.898509 TGCAGTTTGGTGCCGTGC 61.899 61.111 0.00 0.00 43.28 5.34
79 80 4.645921 GCAGTTTGGTGCCGTGCC 62.646 66.667 0.00 0.00 37.49 5.01
80 81 4.326766 CAGTTTGGTGCCGTGCCG 62.327 66.667 0.00 0.00 0.00 5.69
81 82 4.868116 AGTTTGGTGCCGTGCCGT 62.868 61.111 0.00 0.00 0.00 5.68
82 83 4.622456 GTTTGGTGCCGTGCCGTG 62.622 66.667 0.00 0.00 0.00 4.94
93 94 3.590857 TGCCGTGCGTGCACAAAT 61.591 55.556 23.26 0.00 46.47 2.32
94 95 2.800746 GCCGTGCGTGCACAAATC 60.801 61.111 23.26 3.08 46.47 2.17
95 96 2.945984 CCGTGCGTGCACAAATCT 59.054 55.556 23.26 0.00 46.47 2.40
96 97 1.440850 CCGTGCGTGCACAAATCTG 60.441 57.895 23.26 7.00 46.47 2.90
97 98 1.440850 CGTGCGTGCACAAATCTGG 60.441 57.895 23.26 0.00 46.47 3.86
98 99 1.840630 CGTGCGTGCACAAATCTGGA 61.841 55.000 23.26 0.00 46.47 3.86
99 100 0.310543 GTGCGTGCACAAATCTGGAA 59.689 50.000 19.45 0.00 45.53 3.53
100 101 1.028130 TGCGTGCACAAATCTGGAAA 58.972 45.000 18.64 0.00 0.00 3.13
101 102 1.406898 TGCGTGCACAAATCTGGAAAA 59.593 42.857 18.64 0.00 0.00 2.29
102 103 2.053627 GCGTGCACAAATCTGGAAAAG 58.946 47.619 18.64 0.00 0.00 2.27
103 104 2.664916 CGTGCACAAATCTGGAAAAGG 58.335 47.619 18.64 0.00 0.00 3.11
104 105 2.407090 GTGCACAAATCTGGAAAAGGC 58.593 47.619 13.17 0.00 0.00 4.35
105 106 2.036346 GTGCACAAATCTGGAAAAGGCT 59.964 45.455 13.17 0.00 0.00 4.58
106 107 2.297033 TGCACAAATCTGGAAAAGGCTC 59.703 45.455 0.00 0.00 0.00 4.70
107 108 2.297033 GCACAAATCTGGAAAAGGCTCA 59.703 45.455 0.00 0.00 0.00 4.26
108 109 3.613432 GCACAAATCTGGAAAAGGCTCAG 60.613 47.826 0.00 0.00 0.00 3.35
109 110 2.560105 ACAAATCTGGAAAAGGCTCAGC 59.440 45.455 0.00 0.00 0.00 4.26
110 111 1.457346 AATCTGGAAAAGGCTCAGCG 58.543 50.000 0.00 0.00 0.00 5.18
111 112 0.393537 ATCTGGAAAAGGCTCAGCGG 60.394 55.000 0.00 0.00 0.00 5.52
112 113 2.672996 TGGAAAAGGCTCAGCGGC 60.673 61.111 0.00 0.00 38.75 6.53
113 114 3.804193 GGAAAAGGCTCAGCGGCG 61.804 66.667 0.51 0.51 44.22 6.46
114 115 4.467062 GAAAAGGCTCAGCGGCGC 62.467 66.667 26.86 26.86 44.22 6.53
121 122 4.135153 CTCAGCGGCGCCTGTAGT 62.135 66.667 30.40 5.57 34.47 2.73
122 123 4.129737 TCAGCGGCGCCTGTAGTC 62.130 66.667 30.40 6.23 34.47 2.59
123 124 4.135153 CAGCGGCGCCTGTAGTCT 62.135 66.667 30.40 3.74 0.00 3.24
124 125 4.135153 AGCGGCGCCTGTAGTCTG 62.135 66.667 30.40 7.15 0.00 3.51
125 126 4.436998 GCGGCGCCTGTAGTCTGT 62.437 66.667 26.68 0.00 0.00 3.41
126 127 3.060020 GCGGCGCCTGTAGTCTGTA 62.060 63.158 26.68 0.00 0.00 2.74
127 128 1.064296 CGGCGCCTGTAGTCTGTAG 59.936 63.158 26.68 0.00 0.00 2.74
128 129 1.437986 GGCGCCTGTAGTCTGTAGG 59.562 63.158 22.15 0.00 34.67 3.18
129 130 1.437986 GCGCCTGTAGTCTGTAGGG 59.562 63.158 0.00 0.00 32.15 3.53
130 131 1.321074 GCGCCTGTAGTCTGTAGGGT 61.321 60.000 0.00 0.00 32.15 4.34
131 132 2.020694 GCGCCTGTAGTCTGTAGGGTA 61.021 57.143 0.00 0.00 32.15 3.69
132 133 1.948145 CGCCTGTAGTCTGTAGGGTAG 59.052 57.143 6.41 0.00 32.15 3.18
133 134 2.683152 CGCCTGTAGTCTGTAGGGTAGT 60.683 54.545 6.41 0.00 32.15 2.73
134 135 3.363627 GCCTGTAGTCTGTAGGGTAGTT 58.636 50.000 6.41 0.00 32.15 2.24
135 136 3.380954 GCCTGTAGTCTGTAGGGTAGTTC 59.619 52.174 6.41 0.00 32.15 3.01
136 137 3.952967 CCTGTAGTCTGTAGGGTAGTTCC 59.047 52.174 0.00 0.00 0.00 3.62
152 153 7.997773 GGTAGTTCCCTGTTATCTTTCTTTT 57.002 36.000 0.00 0.00 0.00 2.27
153 154 8.041829 GGTAGTTCCCTGTTATCTTTCTTTTC 57.958 38.462 0.00 0.00 0.00 2.29
154 155 7.883833 GGTAGTTCCCTGTTATCTTTCTTTTCT 59.116 37.037 0.00 0.00 0.00 2.52
155 156 9.286170 GTAGTTCCCTGTTATCTTTCTTTTCTT 57.714 33.333 0.00 0.00 0.00 2.52
156 157 8.768501 AGTTCCCTGTTATCTTTCTTTTCTTT 57.231 30.769 0.00 0.00 0.00 2.52
157 158 9.201989 AGTTCCCTGTTATCTTTCTTTTCTTTT 57.798 29.630 0.00 0.00 0.00 2.27
158 159 9.817809 GTTCCCTGTTATCTTTCTTTTCTTTTT 57.182 29.630 0.00 0.00 0.00 1.94
160 161 9.196139 TCCCTGTTATCTTTCTTTTCTTTTTCA 57.804 29.630 0.00 0.00 0.00 2.69
161 162 9.987272 CCCTGTTATCTTTCTTTTCTTTTTCAT 57.013 29.630 0.00 0.00 0.00 2.57
166 167 9.677567 TTATCTTTCTTTTCTTTTTCATGTCGG 57.322 29.630 0.00 0.00 0.00 4.79
167 168 7.328277 TCTTTCTTTTCTTTTTCATGTCGGA 57.672 32.000 0.00 0.00 0.00 4.55
168 169 7.193595 TCTTTCTTTTCTTTTTCATGTCGGAC 58.806 34.615 0.00 0.00 0.00 4.79
169 170 6.443934 TTCTTTTCTTTTTCATGTCGGACA 57.556 33.333 14.01 14.01 0.00 4.02
170 171 6.060028 TCTTTTCTTTTTCATGTCGGACAG 57.940 37.500 16.84 8.79 0.00 3.51
171 172 4.829064 TTTCTTTTTCATGTCGGACAGG 57.171 40.909 16.13 16.13 0.00 4.00
172 173 2.778299 TCTTTTTCATGTCGGACAGGG 58.222 47.619 21.09 13.41 29.72 4.45
173 174 2.370519 TCTTTTTCATGTCGGACAGGGA 59.629 45.455 21.09 11.38 29.72 4.20
174 175 2.178912 TTTTCATGTCGGACAGGGAC 57.821 50.000 21.09 0.00 29.72 4.46
176 177 0.608130 TTCATGTCGGACAGGGACAG 59.392 55.000 21.09 5.33 46.55 3.51
177 178 0.541998 TCATGTCGGACAGGGACAGT 60.542 55.000 21.09 0.00 46.55 3.55
178 179 0.390340 CATGTCGGACAGGGACAGTG 60.390 60.000 16.84 4.23 46.55 3.66
179 180 0.541998 ATGTCGGACAGGGACAGTGA 60.542 55.000 16.84 0.00 46.55 3.41
180 181 0.541998 TGTCGGACAGGGACAGTGAT 60.542 55.000 6.76 0.00 39.36 3.06
181 182 1.272258 TGTCGGACAGGGACAGTGATA 60.272 52.381 6.76 0.00 39.36 2.15
182 183 2.032620 GTCGGACAGGGACAGTGATAT 58.967 52.381 2.62 0.00 34.56 1.63
183 184 3.220110 GTCGGACAGGGACAGTGATATA 58.780 50.000 2.62 0.00 34.56 0.86
184 185 3.827302 GTCGGACAGGGACAGTGATATAT 59.173 47.826 2.62 0.00 34.56 0.86
185 186 3.826729 TCGGACAGGGACAGTGATATATG 59.173 47.826 0.00 0.00 0.00 1.78
186 187 3.615110 CGGACAGGGACAGTGATATATGC 60.615 52.174 0.00 0.00 0.00 3.14
187 188 3.324846 GGACAGGGACAGTGATATATGCA 59.675 47.826 0.00 0.00 0.00 3.96
188 189 4.019860 GGACAGGGACAGTGATATATGCAT 60.020 45.833 3.79 3.79 0.00 3.96
189 190 5.187772 GGACAGGGACAGTGATATATGCATA 59.812 44.000 9.27 9.27 0.00 3.14
190 191 6.042638 ACAGGGACAGTGATATATGCATAC 57.957 41.667 8.99 0.00 0.00 2.39
191 192 5.105063 CAGGGACAGTGATATATGCATACG 58.895 45.833 8.99 0.00 0.00 3.06
192 193 3.865745 GGGACAGTGATATATGCATACGC 59.134 47.826 8.99 3.40 39.24 4.42
203 204 2.783440 GCATACGCAATTTAGCCGC 58.217 52.632 0.00 0.00 38.36 6.53
204 205 0.028770 GCATACGCAATTTAGCCGCA 59.971 50.000 0.00 0.00 38.36 5.69
205 206 1.921573 GCATACGCAATTTAGCCGCAG 60.922 52.381 0.00 0.00 38.36 5.18
206 207 0.307760 ATACGCAATTTAGCCGCAGC 59.692 50.000 0.00 0.00 40.32 5.25
207 208 1.021920 TACGCAATTTAGCCGCAGCA 61.022 50.000 0.00 0.00 43.56 4.41
208 209 1.584483 CGCAATTTAGCCGCAGCAG 60.584 57.895 0.00 0.00 43.56 4.24
209 210 1.875364 GCAATTTAGCCGCAGCAGC 60.875 57.895 0.00 0.00 43.56 5.25
210 211 1.507630 CAATTTAGCCGCAGCAGCA 59.492 52.632 2.79 0.00 43.56 4.41
211 212 0.524816 CAATTTAGCCGCAGCAGCAG 60.525 55.000 2.79 0.00 43.56 4.24
212 213 2.275547 AATTTAGCCGCAGCAGCAGC 62.276 55.000 2.79 0.23 44.53 5.25
213 214 4.703060 TTAGCCGCAGCAGCAGCA 62.703 61.111 12.13 0.00 46.59 4.41
214 215 4.703060 TAGCCGCAGCAGCAGCAA 62.703 61.111 12.13 0.00 46.59 3.91
217 218 4.400109 CCGCAGCAGCAGCAACAG 62.400 66.667 10.77 0.00 45.49 3.16
219 220 3.973516 GCAGCAGCAGCAACAGCA 61.974 61.111 4.63 0.00 45.49 4.41
220 221 2.725641 CAGCAGCAGCAACAGCAA 59.274 55.556 3.17 0.00 45.49 3.91
221 222 1.289066 CAGCAGCAGCAACAGCAAT 59.711 52.632 3.17 0.00 45.49 3.56
222 223 0.732880 CAGCAGCAGCAACAGCAATC 60.733 55.000 3.17 0.00 45.49 2.67
223 224 1.176619 AGCAGCAGCAACAGCAATCA 61.177 50.000 3.17 0.00 45.49 2.57
224 225 0.732880 GCAGCAGCAACAGCAATCAG 60.733 55.000 0.00 0.00 41.58 2.90
225 226 0.879090 CAGCAGCAACAGCAATCAGA 59.121 50.000 0.00 0.00 0.00 3.27
226 227 1.472878 CAGCAGCAACAGCAATCAGAT 59.527 47.619 0.00 0.00 0.00 2.90
227 228 1.472878 AGCAGCAACAGCAATCAGATG 59.527 47.619 0.00 0.00 40.19 2.90
228 229 1.471287 GCAGCAACAGCAATCAGATGA 59.529 47.619 0.00 0.00 37.02 2.92
229 230 2.478031 GCAGCAACAGCAATCAGATGAG 60.478 50.000 0.00 0.00 37.02 2.90
230 231 1.743958 AGCAACAGCAATCAGATGAGC 59.256 47.619 0.73 0.73 37.02 4.26
231 232 1.531264 GCAACAGCAATCAGATGAGCG 60.531 52.381 3.19 2.10 37.02 5.03
232 233 2.004733 CAACAGCAATCAGATGAGCGA 58.995 47.619 0.00 0.00 37.02 4.93
233 234 1.649664 ACAGCAATCAGATGAGCGAC 58.350 50.000 0.00 0.00 37.02 5.19
234 235 1.206610 ACAGCAATCAGATGAGCGACT 59.793 47.619 0.00 0.00 37.02 4.18
235 236 2.277969 CAGCAATCAGATGAGCGACTT 58.722 47.619 0.00 0.00 35.00 3.01
236 237 2.676839 CAGCAATCAGATGAGCGACTTT 59.323 45.455 0.00 0.00 35.00 2.66
237 238 2.935201 AGCAATCAGATGAGCGACTTTC 59.065 45.455 0.00 0.00 0.00 2.62
238 239 2.674852 GCAATCAGATGAGCGACTTTCA 59.325 45.455 0.00 0.00 0.00 2.69
239 240 3.484886 GCAATCAGATGAGCGACTTTCAC 60.485 47.826 0.00 0.00 0.00 3.18
240 241 2.370281 TCAGATGAGCGACTTTCACC 57.630 50.000 0.00 0.00 0.00 4.02
241 242 1.066858 TCAGATGAGCGACTTTCACCC 60.067 52.381 0.00 0.00 0.00 4.61
242 243 1.066573 CAGATGAGCGACTTTCACCCT 60.067 52.381 0.00 0.00 0.00 4.34
243 244 2.166459 CAGATGAGCGACTTTCACCCTA 59.834 50.000 0.00 0.00 0.00 3.53
244 245 2.166664 AGATGAGCGACTTTCACCCTAC 59.833 50.000 0.00 0.00 0.00 3.18
245 246 0.242825 TGAGCGACTTTCACCCTACG 59.757 55.000 0.00 0.00 0.00 3.51
246 247 0.458025 GAGCGACTTTCACCCTACGG 60.458 60.000 0.00 0.00 0.00 4.02
247 248 0.896940 AGCGACTTTCACCCTACGGA 60.897 55.000 0.00 0.00 0.00 4.69
248 249 0.175073 GCGACTTTCACCCTACGGAT 59.825 55.000 0.00 0.00 0.00 4.18
249 250 1.922570 CGACTTTCACCCTACGGATG 58.077 55.000 0.00 0.00 0.00 3.51
250 251 1.470979 CGACTTTCACCCTACGGATGG 60.471 57.143 0.00 0.00 0.00 3.51
251 252 1.829222 GACTTTCACCCTACGGATGGA 59.171 52.381 0.00 0.00 0.00 3.41
252 253 2.434702 GACTTTCACCCTACGGATGGAT 59.565 50.000 0.00 0.00 0.00 3.41
253 254 2.170607 ACTTTCACCCTACGGATGGATG 59.829 50.000 0.00 0.00 0.00 3.51
254 255 1.128200 TTCACCCTACGGATGGATGG 58.872 55.000 0.00 0.00 0.00 3.51
255 256 0.263468 TCACCCTACGGATGGATGGA 59.737 55.000 0.00 0.00 0.00 3.41
256 257 1.132849 TCACCCTACGGATGGATGGAT 60.133 52.381 0.00 0.00 0.00 3.41
257 258 1.002430 CACCCTACGGATGGATGGATG 59.998 57.143 0.00 0.00 0.00 3.51
258 259 0.036010 CCCTACGGATGGATGGATGC 60.036 60.000 0.00 0.00 0.00 3.91
259 260 0.979665 CCTACGGATGGATGGATGCT 59.020 55.000 0.00 0.00 0.00 3.79
260 261 1.066573 CCTACGGATGGATGGATGCTC 60.067 57.143 0.00 0.00 0.00 4.26
261 262 1.898472 CTACGGATGGATGGATGCTCT 59.102 52.381 0.00 0.00 0.00 4.09
262 263 1.135094 ACGGATGGATGGATGCTCTT 58.865 50.000 0.00 0.00 0.00 2.85
263 264 1.492176 ACGGATGGATGGATGCTCTTT 59.508 47.619 0.00 0.00 0.00 2.52
264 265 1.878088 CGGATGGATGGATGCTCTTTG 59.122 52.381 0.00 0.00 0.00 2.77
265 266 2.486013 CGGATGGATGGATGCTCTTTGA 60.486 50.000 0.00 0.00 0.00 2.69
266 267 3.147629 GGATGGATGGATGCTCTTTGAG 58.852 50.000 0.00 0.00 0.00 3.02
267 268 3.434739 GGATGGATGGATGCTCTTTGAGT 60.435 47.826 0.00 0.00 31.39 3.41
268 269 3.272574 TGGATGGATGCTCTTTGAGTC 57.727 47.619 0.00 0.00 31.39 3.36
269 270 2.573009 TGGATGGATGCTCTTTGAGTCA 59.427 45.455 0.00 0.00 31.39 3.41
270 271 3.201487 TGGATGGATGCTCTTTGAGTCAT 59.799 43.478 0.00 0.00 32.37 3.06
271 272 3.564644 GGATGGATGCTCTTTGAGTCATG 59.435 47.826 0.00 0.00 30.84 3.07
272 273 3.986996 TGGATGCTCTTTGAGTCATGA 57.013 42.857 0.00 0.00 30.84 3.07
273 274 3.870274 TGGATGCTCTTTGAGTCATGAG 58.130 45.455 15.37 15.37 30.84 2.90
276 277 2.105006 GCTCTTTGAGTCATGAGCCA 57.895 50.000 25.79 0.00 44.16 4.75
277 278 2.008329 GCTCTTTGAGTCATGAGCCAG 58.992 52.381 25.79 10.78 44.16 4.85
278 279 2.008329 CTCTTTGAGTCATGAGCCAGC 58.992 52.381 0.00 0.00 0.00 4.85
279 280 1.093159 CTTTGAGTCATGAGCCAGCC 58.907 55.000 0.00 0.00 0.00 4.85
280 281 0.694771 TTTGAGTCATGAGCCAGCCT 59.305 50.000 0.00 0.00 0.00 4.58
281 282 0.251354 TTGAGTCATGAGCCAGCCTC 59.749 55.000 0.00 0.00 41.15 4.70
288 289 4.500265 GAGCCAGCCTCAAACCAA 57.500 55.556 0.00 0.00 40.45 3.67
289 290 2.261215 GAGCCAGCCTCAAACCAAG 58.739 57.895 0.00 0.00 40.45 3.61
290 291 1.871126 GAGCCAGCCTCAAACCAAGC 61.871 60.000 0.00 0.00 40.45 4.01
291 292 1.905354 GCCAGCCTCAAACCAAGCT 60.905 57.895 0.00 0.00 35.52 3.74
292 293 1.466851 GCCAGCCTCAAACCAAGCTT 61.467 55.000 0.00 0.00 31.93 3.74
293 294 1.043022 CCAGCCTCAAACCAAGCTTT 58.957 50.000 0.00 0.00 31.93 3.51
294 295 1.000171 CCAGCCTCAAACCAAGCTTTC 60.000 52.381 0.00 0.00 31.93 2.62
295 296 1.000171 CAGCCTCAAACCAAGCTTTCC 60.000 52.381 0.00 0.00 31.93 3.13
296 297 0.318441 GCCTCAAACCAAGCTTTCCC 59.682 55.000 0.00 0.00 0.00 3.97
297 298 2.001076 CCTCAAACCAAGCTTTCCCT 57.999 50.000 0.00 0.00 0.00 4.20
298 299 1.889170 CCTCAAACCAAGCTTTCCCTC 59.111 52.381 0.00 0.00 0.00 4.30
299 300 1.889170 CTCAAACCAAGCTTTCCCTCC 59.111 52.381 0.00 0.00 0.00 4.30
300 301 1.216678 TCAAACCAAGCTTTCCCTCCA 59.783 47.619 0.00 0.00 0.00 3.86
301 302 2.158325 TCAAACCAAGCTTTCCCTCCAT 60.158 45.455 0.00 0.00 0.00 3.41
302 303 1.928868 AACCAAGCTTTCCCTCCATG 58.071 50.000 0.00 0.00 0.00 3.66
303 304 0.613012 ACCAAGCTTTCCCTCCATGC 60.613 55.000 0.00 0.00 0.00 4.06
304 305 0.612732 CCAAGCTTTCCCTCCATGCA 60.613 55.000 0.00 0.00 0.00 3.96
305 306 1.481871 CAAGCTTTCCCTCCATGCAT 58.518 50.000 0.00 0.00 0.00 3.96
306 307 1.136305 CAAGCTTTCCCTCCATGCATG 59.864 52.381 20.19 20.19 0.00 4.06
315 316 3.773370 CCATGCATGGCTCCATCC 58.227 61.111 31.95 0.00 41.75 3.51
316 317 1.906824 CCATGCATGGCTCCATCCC 60.907 63.158 31.95 0.00 41.75 3.85
317 318 1.152631 CATGCATGGCTCCATCCCA 60.153 57.895 19.40 0.30 33.90 4.37
318 319 0.757561 CATGCATGGCTCCATCCCAA 60.758 55.000 19.40 0.00 35.67 4.12
319 320 0.757935 ATGCATGGCTCCATCCCAAC 60.758 55.000 0.00 0.00 35.67 3.77
320 321 2.129785 GCATGGCTCCATCCCAACC 61.130 63.158 0.00 0.00 35.67 3.77
321 322 1.307309 CATGGCTCCATCCCAACCA 59.693 57.895 0.00 0.00 35.67 3.67
322 323 1.039233 CATGGCTCCATCCCAACCAC 61.039 60.000 0.00 0.00 35.67 4.16
323 324 1.508667 ATGGCTCCATCCCAACCACA 61.509 55.000 0.00 0.00 35.67 4.17
324 325 1.678970 GGCTCCATCCCAACCACAC 60.679 63.158 0.00 0.00 0.00 3.82
325 326 1.074775 GCTCCATCCCAACCACACA 59.925 57.895 0.00 0.00 0.00 3.72
326 327 0.323725 GCTCCATCCCAACCACACAT 60.324 55.000 0.00 0.00 0.00 3.21
327 328 1.892329 GCTCCATCCCAACCACACATT 60.892 52.381 0.00 0.00 0.00 2.71
328 329 1.820519 CTCCATCCCAACCACACATTG 59.179 52.381 0.00 0.00 0.00 2.82
344 345 2.997315 TGGACGGACCAGGAGCTG 60.997 66.667 0.00 0.00 44.64 4.24
345 346 2.997897 GGACGGACCAGGAGCTGT 60.998 66.667 0.00 0.00 38.79 4.40
346 347 2.584391 GGACGGACCAGGAGCTGTT 61.584 63.158 0.00 0.00 38.79 3.16
347 348 1.255667 GGACGGACCAGGAGCTGTTA 61.256 60.000 0.00 0.00 38.79 2.41
348 349 0.173708 GACGGACCAGGAGCTGTTAG 59.826 60.000 0.00 0.00 0.00 2.34
349 350 0.251653 ACGGACCAGGAGCTGTTAGA 60.252 55.000 0.00 0.00 0.00 2.10
350 351 0.173708 CGGACCAGGAGCTGTTAGAC 59.826 60.000 0.00 0.00 0.00 2.59
351 352 1.267121 GGACCAGGAGCTGTTAGACA 58.733 55.000 0.00 0.00 0.00 3.41
352 353 1.834263 GGACCAGGAGCTGTTAGACAT 59.166 52.381 0.00 0.00 0.00 3.06
353 354 2.159028 GGACCAGGAGCTGTTAGACATC 60.159 54.545 0.00 0.00 0.00 3.06
354 355 2.763448 GACCAGGAGCTGTTAGACATCT 59.237 50.000 0.00 0.00 0.00 2.90
355 356 3.954904 GACCAGGAGCTGTTAGACATCTA 59.045 47.826 0.00 0.00 0.00 1.98
356 357 3.702045 ACCAGGAGCTGTTAGACATCTAC 59.298 47.826 0.00 0.00 0.00 2.59
357 358 3.957497 CCAGGAGCTGTTAGACATCTACT 59.043 47.826 0.00 0.00 36.02 2.57
358 359 4.037446 CCAGGAGCTGTTAGACATCTACTC 59.963 50.000 0.00 0.00 33.52 2.59
359 360 3.880490 AGGAGCTGTTAGACATCTACTCG 59.120 47.826 0.00 0.00 30.08 4.18
360 361 3.878103 GGAGCTGTTAGACATCTACTCGA 59.122 47.826 0.00 0.00 0.00 4.04
361 362 4.024387 GGAGCTGTTAGACATCTACTCGAG 60.024 50.000 11.84 11.84 0.00 4.04
362 363 3.314080 AGCTGTTAGACATCTACTCGAGC 59.686 47.826 13.61 0.00 0.00 5.03
363 364 3.065510 GCTGTTAGACATCTACTCGAGCA 59.934 47.826 13.61 0.00 0.00 4.26
364 365 4.261405 GCTGTTAGACATCTACTCGAGCAT 60.261 45.833 13.61 0.00 0.00 3.79
365 366 5.175090 TGTTAGACATCTACTCGAGCATG 57.825 43.478 13.61 14.41 0.00 4.06
366 367 4.640647 TGTTAGACATCTACTCGAGCATGT 59.359 41.667 19.80 19.80 32.15 3.21
367 368 5.125578 TGTTAGACATCTACTCGAGCATGTT 59.874 40.000 20.37 14.51 30.65 2.71
368 369 4.039151 AGACATCTACTCGAGCATGTTG 57.961 45.455 20.37 14.32 30.65 3.33
369 370 2.537625 GACATCTACTCGAGCATGTTGC 59.462 50.000 20.37 9.75 45.46 4.17
381 382 3.837213 GCATGTTGCACTTGTGTAGAT 57.163 42.857 2.61 0.00 44.26 1.98
382 383 3.495193 GCATGTTGCACTTGTGTAGATG 58.505 45.455 2.61 6.68 44.26 2.90
383 384 3.189080 GCATGTTGCACTTGTGTAGATGA 59.811 43.478 14.26 0.00 44.26 2.92
384 385 4.670992 GCATGTTGCACTTGTGTAGATGAG 60.671 45.833 14.26 0.00 44.26 2.90
385 386 2.807967 TGTTGCACTTGTGTAGATGAGC 59.192 45.455 2.61 0.00 0.00 4.26
386 387 3.070018 GTTGCACTTGTGTAGATGAGCT 58.930 45.455 2.61 0.00 0.00 4.09
387 388 2.691927 TGCACTTGTGTAGATGAGCTG 58.308 47.619 0.00 0.00 0.00 4.24
388 389 1.396301 GCACTTGTGTAGATGAGCTGC 59.604 52.381 0.00 0.00 0.00 5.25
389 390 1.657594 CACTTGTGTAGATGAGCTGCG 59.342 52.381 0.00 0.00 31.00 5.18
390 391 1.546029 ACTTGTGTAGATGAGCTGCGA 59.454 47.619 0.00 0.00 31.00 5.10
391 392 2.191802 CTTGTGTAGATGAGCTGCGAG 58.808 52.381 0.00 0.00 31.00 5.03
392 393 0.457443 TGTGTAGATGAGCTGCGAGG 59.543 55.000 0.00 0.00 31.00 4.63
393 394 0.249238 GTGTAGATGAGCTGCGAGGG 60.249 60.000 0.00 0.00 31.00 4.30
394 395 1.365633 GTAGATGAGCTGCGAGGGG 59.634 63.158 0.00 0.00 0.00 4.79
395 396 1.109920 GTAGATGAGCTGCGAGGGGA 61.110 60.000 0.00 0.00 0.00 4.81
396 397 0.825425 TAGATGAGCTGCGAGGGGAG 60.825 60.000 0.00 0.00 34.23 4.30
423 424 1.226746 GACCCGGACTTGTTCACTTG 58.773 55.000 0.73 0.00 0.00 3.16
443 444 3.894947 GCGTGTTTGGTTGCCCGT 61.895 61.111 0.00 0.00 0.00 5.28
501 505 2.168313 CTGTTTGGTTGCCTGGTTTTCT 59.832 45.455 0.00 0.00 0.00 2.52
578 583 1.168714 GCTCGGATTGGCAGTTTCTT 58.831 50.000 0.00 0.00 0.00 2.52
661 669 0.181350 GGCGGGAGATGGAAATCTGT 59.819 55.000 0.00 0.00 0.00 3.41
721 730 1.960040 CTCGCTCACCCATAGCCACA 61.960 60.000 0.00 0.00 36.60 4.17
934 959 1.351017 CCCCCTTTGTTAGCTCAGTGA 59.649 52.381 0.00 0.00 0.00 3.41
941 966 3.165058 TGTTAGCTCAGTGATTAGGCG 57.835 47.619 0.00 0.00 0.00 5.52
1008 1033 0.659427 TCGACTAGGTTATGGACGCG 59.341 55.000 3.53 3.53 0.00 6.01
1099 1124 0.664767 GAGAGCTGTTCGTCGTGCTT 60.665 55.000 0.00 0.00 35.76 3.91
1133 1158 1.676006 CCGCTATGGTCCATTGTTTCC 59.324 52.381 10.33 0.00 0.00 3.13
1153 1179 0.687757 CCGGGAACAGGAGAGGATCA 60.688 60.000 0.00 0.00 37.82 2.92
1217 1243 6.349611 GCTCTGTGGATGCTTAGAATGAAAAA 60.350 38.462 0.00 0.00 0.00 1.94
1308 1334 4.065088 GTGTTGAAGAGCAAGTGGTCATA 58.935 43.478 12.65 0.00 44.42 2.15
1373 1400 4.756642 TCACAACATGTTCAGGAGATCAAC 59.243 41.667 8.48 0.00 0.00 3.18
1457 1484 3.481453 TGATCAGGAGACCATCTAGTCG 58.519 50.000 0.00 0.00 41.83 4.18
1631 1664 2.833943 AGATGGTACTCATGTCACTGCA 59.166 45.455 2.07 0.00 35.97 4.41
1639 1672 3.070734 ACTCATGTCACTGCAAGAGTTCT 59.929 43.478 0.00 0.00 42.49 3.01
1654 1687 4.475345 AGAGTTCTTAGGTCACAGTCTGT 58.525 43.478 0.00 0.00 0.00 3.41
1823 1856 1.969064 CAACATCCCCGACGGCAAA 60.969 57.895 8.86 0.00 0.00 3.68
1844 1877 2.254152 TCTACCTTGGAGATGCTGGT 57.746 50.000 0.00 0.00 35.05 4.00
1962 1995 3.614616 GCTGTTTAATCTCAGACACTCCG 59.385 47.826 6.91 0.00 34.02 4.63
2047 2081 2.582636 AGAAGCCATTCCACCCATACTT 59.417 45.455 0.00 0.00 35.94 2.24
2059 2093 4.383118 CCACCCATACTTCACTCAGGTTAG 60.383 50.000 0.00 0.00 0.00 2.34
2178 2212 0.909133 TAGCTCTGGGCATGGTGTGA 60.909 55.000 0.74 0.00 44.79 3.58
2212 2246 5.409826 ACAATGACGCTTGGAAAAACAAAAA 59.590 32.000 0.00 0.00 0.00 1.94
2263 2297 2.906389 ACAGAGGTCAGTGCAGGATTTA 59.094 45.455 0.00 0.00 0.00 1.40
2312 2377 0.322636 AGCAGCAGAAGCAGAAGCAT 60.323 50.000 0.00 0.00 45.49 3.79
2403 2473 9.643693 CAATGGCTCTTAATAATTTGAACTGTT 57.356 29.630 0.00 0.00 0.00 3.16
2440 2510 9.003658 AGTTAGGATGAACTGTCATTTGTTTAG 57.996 33.333 0.00 0.00 44.83 1.85
2548 2618 3.070476 ACACCATGTCATATGTGCACA 57.930 42.857 24.08 24.08 0.00 4.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.608717 CGGGAAGAGACCTGGACCTG 61.609 65.000 0.00 0.00 33.06 4.00
1 2 1.305381 CGGGAAGAGACCTGGACCT 60.305 63.158 0.00 0.00 33.06 3.85
2 3 3.020237 GCGGGAAGAGACCTGGACC 62.020 68.421 0.00 0.00 36.85 4.46
3 4 1.617947 ATGCGGGAAGAGACCTGGAC 61.618 60.000 0.00 0.00 39.32 4.02
4 5 1.306141 ATGCGGGAAGAGACCTGGA 60.306 57.895 0.00 0.00 40.68 3.86
5 6 1.144936 GATGCGGGAAGAGACCTGG 59.855 63.158 0.00 0.00 36.85 4.45
6 7 1.227089 CGATGCGGGAAGAGACCTG 60.227 63.158 0.00 0.00 39.16 4.00
7 8 0.757188 ATCGATGCGGGAAGAGACCT 60.757 55.000 0.00 0.00 0.00 3.85
8 9 0.598680 CATCGATGCGGGAAGAGACC 60.599 60.000 13.37 0.00 0.00 3.85
9 10 0.598680 CCATCGATGCGGGAAGAGAC 60.599 60.000 20.25 0.00 0.00 3.36
10 11 0.755327 TCCATCGATGCGGGAAGAGA 60.755 55.000 20.25 6.27 0.00 3.10
11 12 0.319728 ATCCATCGATGCGGGAAGAG 59.680 55.000 20.25 3.85 33.73 2.85
12 13 0.318441 GATCCATCGATGCGGGAAGA 59.682 55.000 20.25 10.77 33.73 2.87
13 14 0.671781 GGATCCATCGATGCGGGAAG 60.672 60.000 20.25 5.34 33.73 3.46
14 15 1.371183 GGATCCATCGATGCGGGAA 59.629 57.895 20.25 2.79 33.73 3.97
15 16 1.194121 ATGGATCCATCGATGCGGGA 61.194 55.000 22.15 12.51 39.59 5.14
16 17 0.742281 GATGGATCCATCGATGCGGG 60.742 60.000 33.48 6.91 42.55 6.13
17 18 2.759783 GATGGATCCATCGATGCGG 58.240 57.895 33.48 7.70 42.55 5.69
25 26 4.224594 CCTACAGCTACATGATGGATCCAT 59.775 45.833 27.66 27.66 39.69 3.41
26 27 3.580022 CCTACAGCTACATGATGGATCCA 59.420 47.826 18.88 18.88 36.18 3.41
27 28 3.834813 TCCTACAGCTACATGATGGATCC 59.165 47.826 4.20 4.20 36.18 3.36
28 29 4.526262 ACTCCTACAGCTACATGATGGATC 59.474 45.833 0.00 0.00 36.18 3.36
29 30 4.282957 CACTCCTACAGCTACATGATGGAT 59.717 45.833 0.00 0.00 36.18 3.41
30 31 3.638627 CACTCCTACAGCTACATGATGGA 59.361 47.826 0.00 0.00 36.18 3.41
31 32 3.386078 ACACTCCTACAGCTACATGATGG 59.614 47.826 0.00 0.00 36.18 3.51
32 33 4.662468 ACACTCCTACAGCTACATGATG 57.338 45.455 0.00 0.00 38.19 3.07
33 34 4.830046 CCTACACTCCTACAGCTACATGAT 59.170 45.833 0.00 0.00 0.00 2.45
34 35 4.079958 TCCTACACTCCTACAGCTACATGA 60.080 45.833 0.00 0.00 0.00 3.07
35 36 4.036971 GTCCTACACTCCTACAGCTACATG 59.963 50.000 0.00 0.00 0.00 3.21
36 37 4.208746 GTCCTACACTCCTACAGCTACAT 58.791 47.826 0.00 0.00 0.00 2.29
37 38 3.009805 TGTCCTACACTCCTACAGCTACA 59.990 47.826 0.00 0.00 0.00 2.74
38 39 3.618351 TGTCCTACACTCCTACAGCTAC 58.382 50.000 0.00 0.00 0.00 3.58
39 40 3.266254 ACTGTCCTACACTCCTACAGCTA 59.734 47.826 0.00 0.00 40.94 3.32
40 41 2.041891 ACTGTCCTACACTCCTACAGCT 59.958 50.000 0.00 0.00 40.94 4.24
41 42 2.164624 CACTGTCCTACACTCCTACAGC 59.835 54.545 0.00 0.00 40.94 4.40
42 43 2.164624 GCACTGTCCTACACTCCTACAG 59.835 54.545 0.00 0.00 42.53 2.74
43 44 2.168496 GCACTGTCCTACACTCCTACA 58.832 52.381 0.00 0.00 0.00 2.74
44 45 2.164624 CTGCACTGTCCTACACTCCTAC 59.835 54.545 0.00 0.00 0.00 3.18
45 46 2.225041 ACTGCACTGTCCTACACTCCTA 60.225 50.000 0.00 0.00 0.00 2.94
46 47 1.261480 CTGCACTGTCCTACACTCCT 58.739 55.000 0.00 0.00 0.00 3.69
47 48 0.969894 ACTGCACTGTCCTACACTCC 59.030 55.000 0.00 0.00 0.00 3.85
48 49 2.802816 CAAACTGCACTGTCCTACACTC 59.197 50.000 0.00 0.00 0.00 3.51
49 50 2.485479 CCAAACTGCACTGTCCTACACT 60.485 50.000 0.00 0.00 0.00 3.55
50 51 1.873591 CCAAACTGCACTGTCCTACAC 59.126 52.381 0.00 0.00 0.00 2.90
51 52 1.488812 ACCAAACTGCACTGTCCTACA 59.511 47.619 0.00 0.00 0.00 2.74
52 53 1.873591 CACCAAACTGCACTGTCCTAC 59.126 52.381 0.00 0.00 0.00 3.18
53 54 1.813862 GCACCAAACTGCACTGTCCTA 60.814 52.381 0.00 0.00 37.11 2.94
54 55 1.103398 GCACCAAACTGCACTGTCCT 61.103 55.000 0.00 0.00 37.11 3.85
55 56 1.360192 GCACCAAACTGCACTGTCC 59.640 57.895 0.00 0.00 37.11 4.02
56 57 1.360192 GGCACCAAACTGCACTGTC 59.640 57.895 0.00 0.00 39.08 3.51
57 58 2.480610 CGGCACCAAACTGCACTGT 61.481 57.895 0.00 0.00 39.08 3.55
58 59 2.332514 CGGCACCAAACTGCACTG 59.667 61.111 0.00 0.00 39.08 3.66
59 60 2.124320 ACGGCACCAAACTGCACT 60.124 55.556 0.00 0.00 39.08 4.40
60 61 2.026014 CACGGCACCAAACTGCAC 59.974 61.111 0.00 0.00 39.08 4.57
61 62 3.898509 GCACGGCACCAAACTGCA 61.899 61.111 0.00 0.00 39.08 4.41
62 63 4.645921 GGCACGGCACCAAACTGC 62.646 66.667 0.00 0.00 36.33 4.40
80 81 0.310543 TTCCAGATTTGTGCACGCAC 59.689 50.000 15.20 15.20 46.33 5.34
81 82 1.028130 TTTCCAGATTTGTGCACGCA 58.972 45.000 13.13 0.56 0.00 5.24
82 83 2.053627 CTTTTCCAGATTTGTGCACGC 58.946 47.619 13.13 1.41 0.00 5.34
83 84 2.664916 CCTTTTCCAGATTTGTGCACG 58.335 47.619 13.13 0.00 0.00 5.34
84 85 2.036346 AGCCTTTTCCAGATTTGTGCAC 59.964 45.455 10.75 10.75 0.00 4.57
85 86 2.297033 GAGCCTTTTCCAGATTTGTGCA 59.703 45.455 0.00 0.00 0.00 4.57
86 87 2.297033 TGAGCCTTTTCCAGATTTGTGC 59.703 45.455 0.00 0.00 0.00 4.57
87 88 3.613432 GCTGAGCCTTTTCCAGATTTGTG 60.613 47.826 0.00 0.00 0.00 3.33
88 89 2.560105 GCTGAGCCTTTTCCAGATTTGT 59.440 45.455 0.00 0.00 0.00 2.83
89 90 2.415090 CGCTGAGCCTTTTCCAGATTTG 60.415 50.000 0.00 0.00 0.00 2.32
90 91 1.815003 CGCTGAGCCTTTTCCAGATTT 59.185 47.619 0.00 0.00 0.00 2.17
91 92 1.457346 CGCTGAGCCTTTTCCAGATT 58.543 50.000 0.00 0.00 0.00 2.40
92 93 0.393537 CCGCTGAGCCTTTTCCAGAT 60.394 55.000 0.00 0.00 0.00 2.90
93 94 1.003355 CCGCTGAGCCTTTTCCAGA 60.003 57.895 0.00 0.00 0.00 3.86
94 95 2.694760 GCCGCTGAGCCTTTTCCAG 61.695 63.158 0.00 0.00 0.00 3.86
95 96 2.672996 GCCGCTGAGCCTTTTCCA 60.673 61.111 0.00 0.00 0.00 3.53
96 97 3.804193 CGCCGCTGAGCCTTTTCC 61.804 66.667 0.00 0.00 0.00 3.13
97 98 4.467062 GCGCCGCTGAGCCTTTTC 62.467 66.667 0.00 0.00 0.00 2.29
104 105 4.135153 ACTACAGGCGCCGCTGAG 62.135 66.667 23.20 18.88 0.00 3.35
105 106 4.129737 GACTACAGGCGCCGCTGA 62.130 66.667 23.20 7.02 0.00 4.26
106 107 4.135153 AGACTACAGGCGCCGCTG 62.135 66.667 23.20 18.00 0.00 5.18
107 108 4.135153 CAGACTACAGGCGCCGCT 62.135 66.667 23.20 12.81 0.00 5.52
108 109 2.938539 CTACAGACTACAGGCGCCGC 62.939 65.000 23.20 0.00 0.00 6.53
109 110 1.064296 CTACAGACTACAGGCGCCG 59.936 63.158 23.20 18.60 0.00 6.46
110 111 1.437986 CCTACAGACTACAGGCGCC 59.562 63.158 21.89 21.89 0.00 6.53
111 112 1.321074 ACCCTACAGACTACAGGCGC 61.321 60.000 0.00 0.00 0.00 6.53
112 113 1.948145 CTACCCTACAGACTACAGGCG 59.052 57.143 0.00 0.00 0.00 5.52
113 114 3.015675 ACTACCCTACAGACTACAGGC 57.984 52.381 0.00 0.00 0.00 4.85
114 115 3.952967 GGAACTACCCTACAGACTACAGG 59.047 52.174 0.00 0.00 0.00 4.00
128 129 7.883833 AGAAAAGAAAGATAACAGGGAACTACC 59.116 37.037 0.00 0.00 40.21 3.18
129 130 8.850007 AGAAAAGAAAGATAACAGGGAACTAC 57.150 34.615 0.00 0.00 40.21 2.73
130 131 9.862149 AAAGAAAAGAAAGATAACAGGGAACTA 57.138 29.630 0.00 0.00 40.21 2.24
131 132 8.768501 AAAGAAAAGAAAGATAACAGGGAACT 57.231 30.769 0.00 0.00 46.44 3.01
132 133 9.817809 AAAAAGAAAAGAAAGATAACAGGGAAC 57.182 29.630 0.00 0.00 0.00 3.62
134 135 9.196139 TGAAAAAGAAAAGAAAGATAACAGGGA 57.804 29.630 0.00 0.00 0.00 4.20
135 136 9.987272 ATGAAAAAGAAAAGAAAGATAACAGGG 57.013 29.630 0.00 0.00 0.00 4.45
140 141 9.677567 CCGACATGAAAAAGAAAAGAAAGATAA 57.322 29.630 0.00 0.00 0.00 1.75
141 142 9.062524 TCCGACATGAAAAAGAAAAGAAAGATA 57.937 29.630 0.00 0.00 0.00 1.98
142 143 7.862873 GTCCGACATGAAAAAGAAAAGAAAGAT 59.137 33.333 0.00 0.00 0.00 2.40
143 144 7.148154 TGTCCGACATGAAAAAGAAAAGAAAGA 60.148 33.333 0.00 0.00 0.00 2.52
144 145 6.972328 TGTCCGACATGAAAAAGAAAAGAAAG 59.028 34.615 0.00 0.00 0.00 2.62
145 146 6.857956 TGTCCGACATGAAAAAGAAAAGAAA 58.142 32.000 0.00 0.00 0.00 2.52
146 147 6.443934 TGTCCGACATGAAAAAGAAAAGAA 57.556 33.333 0.00 0.00 0.00 2.52
147 148 5.008613 CCTGTCCGACATGAAAAAGAAAAGA 59.991 40.000 0.00 0.00 0.00 2.52
148 149 5.215160 CCTGTCCGACATGAAAAAGAAAAG 58.785 41.667 0.00 0.00 0.00 2.27
149 150 4.037446 CCCTGTCCGACATGAAAAAGAAAA 59.963 41.667 0.00 0.00 0.00 2.29
150 151 3.568007 CCCTGTCCGACATGAAAAAGAAA 59.432 43.478 0.00 0.00 0.00 2.52
151 152 3.146066 CCCTGTCCGACATGAAAAAGAA 58.854 45.455 0.00 0.00 0.00 2.52
152 153 2.370519 TCCCTGTCCGACATGAAAAAGA 59.629 45.455 0.00 0.00 0.00 2.52
153 154 2.484264 GTCCCTGTCCGACATGAAAAAG 59.516 50.000 0.00 0.00 0.00 2.27
154 155 2.158740 TGTCCCTGTCCGACATGAAAAA 60.159 45.455 0.00 0.00 35.35 1.94
155 156 1.418264 TGTCCCTGTCCGACATGAAAA 59.582 47.619 0.00 0.00 35.35 2.29
156 157 1.001974 CTGTCCCTGTCCGACATGAAA 59.998 52.381 0.00 0.00 39.43 2.69
157 158 0.608130 CTGTCCCTGTCCGACATGAA 59.392 55.000 0.00 0.00 39.43 2.57
158 159 0.541998 ACTGTCCCTGTCCGACATGA 60.542 55.000 0.00 0.00 39.43 3.07
159 160 0.390340 CACTGTCCCTGTCCGACATG 60.390 60.000 0.62 0.00 39.43 3.21
160 161 0.541998 TCACTGTCCCTGTCCGACAT 60.542 55.000 0.62 0.00 39.43 3.06
161 162 0.541998 ATCACTGTCCCTGTCCGACA 60.542 55.000 0.29 0.29 37.91 4.35
162 163 1.471119 TATCACTGTCCCTGTCCGAC 58.529 55.000 0.00 0.00 0.00 4.79
163 164 2.454336 ATATCACTGTCCCTGTCCGA 57.546 50.000 0.00 0.00 0.00 4.55
164 165 3.615110 GCATATATCACTGTCCCTGTCCG 60.615 52.174 0.00 0.00 0.00 4.79
165 166 3.324846 TGCATATATCACTGTCCCTGTCC 59.675 47.826 0.00 0.00 0.00 4.02
166 167 4.607293 TGCATATATCACTGTCCCTGTC 57.393 45.455 0.00 0.00 0.00 3.51
167 168 5.336770 CGTATGCATATATCACTGTCCCTGT 60.337 44.000 10.16 0.00 0.00 4.00
168 169 5.105063 CGTATGCATATATCACTGTCCCTG 58.895 45.833 10.16 0.00 0.00 4.45
169 170 4.382040 GCGTATGCATATATCACTGTCCCT 60.382 45.833 10.16 0.00 42.15 4.20
170 171 3.865745 GCGTATGCATATATCACTGTCCC 59.134 47.826 10.16 0.00 42.15 4.46
185 186 0.028770 TGCGGCTAAATTGCGTATGC 59.971 50.000 0.00 0.00 43.20 3.14
186 187 1.921573 GCTGCGGCTAAATTGCGTATG 60.922 52.381 11.21 0.00 35.22 2.39
187 188 0.307760 GCTGCGGCTAAATTGCGTAT 59.692 50.000 11.21 0.00 35.22 3.06
188 189 1.021920 TGCTGCGGCTAAATTGCGTA 61.022 50.000 20.27 0.00 39.59 4.42
189 190 2.257286 CTGCTGCGGCTAAATTGCGT 62.257 55.000 20.27 0.00 39.59 5.24
190 191 1.584483 CTGCTGCGGCTAAATTGCG 60.584 57.895 20.27 0.00 39.59 4.85
191 192 1.875364 GCTGCTGCGGCTAAATTGC 60.875 57.895 25.48 9.41 39.59 3.56
192 193 0.524816 CTGCTGCTGCGGCTAAATTG 60.525 55.000 31.19 12.37 43.34 2.32
193 194 1.805254 CTGCTGCTGCGGCTAAATT 59.195 52.632 31.19 0.00 43.34 1.82
194 195 3.506108 CTGCTGCTGCGGCTAAAT 58.494 55.556 31.19 0.00 43.34 1.40
202 203 2.765250 ATTGCTGTTGCTGCTGCTGC 62.765 55.000 22.51 22.51 40.48 5.25
203 204 0.732880 GATTGCTGTTGCTGCTGCTG 60.733 55.000 17.00 0.77 40.48 4.41
204 205 1.176619 TGATTGCTGTTGCTGCTGCT 61.177 50.000 17.00 0.00 40.48 4.24
205 206 0.732880 CTGATTGCTGTTGCTGCTGC 60.733 55.000 8.89 8.89 40.48 5.25
206 207 0.879090 TCTGATTGCTGTTGCTGCTG 59.121 50.000 0.00 0.00 40.48 4.41
207 208 1.472878 CATCTGATTGCTGTTGCTGCT 59.527 47.619 0.00 0.00 40.48 4.24
208 209 1.471287 TCATCTGATTGCTGTTGCTGC 59.529 47.619 0.00 0.00 40.48 5.25
209 210 2.478031 GCTCATCTGATTGCTGTTGCTG 60.478 50.000 5.47 0.00 40.48 4.41
210 211 1.743958 GCTCATCTGATTGCTGTTGCT 59.256 47.619 5.47 0.00 40.48 3.91
211 212 1.531264 CGCTCATCTGATTGCTGTTGC 60.531 52.381 9.67 0.00 40.20 4.17
212 213 2.004733 TCGCTCATCTGATTGCTGTTG 58.995 47.619 9.67 0.00 0.00 3.33
213 214 2.005451 GTCGCTCATCTGATTGCTGTT 58.995 47.619 9.67 0.00 0.00 3.16
214 215 1.206610 AGTCGCTCATCTGATTGCTGT 59.793 47.619 9.67 0.00 0.00 4.40
215 216 1.937278 AGTCGCTCATCTGATTGCTG 58.063 50.000 9.67 5.10 0.00 4.41
216 217 2.687700 AAGTCGCTCATCTGATTGCT 57.312 45.000 9.67 0.00 0.00 3.91
217 218 2.674852 TGAAAGTCGCTCATCTGATTGC 59.325 45.455 0.00 0.00 0.00 3.56
218 219 3.063180 GGTGAAAGTCGCTCATCTGATTG 59.937 47.826 0.00 0.00 0.00 2.67
219 220 3.265791 GGTGAAAGTCGCTCATCTGATT 58.734 45.455 0.00 0.00 0.00 2.57
220 221 2.419297 GGGTGAAAGTCGCTCATCTGAT 60.419 50.000 0.00 0.00 0.00 2.90
221 222 1.066858 GGGTGAAAGTCGCTCATCTGA 60.067 52.381 0.00 0.00 0.00 3.27
222 223 1.066573 AGGGTGAAAGTCGCTCATCTG 60.067 52.381 0.00 0.00 27.46 2.90
223 224 1.270907 AGGGTGAAAGTCGCTCATCT 58.729 50.000 0.00 0.00 27.46 2.90
224 225 2.541556 GTAGGGTGAAAGTCGCTCATC 58.458 52.381 0.00 0.00 27.46 2.92
225 226 1.135083 CGTAGGGTGAAAGTCGCTCAT 60.135 52.381 0.00 0.00 27.46 2.90
226 227 0.242825 CGTAGGGTGAAAGTCGCTCA 59.757 55.000 0.00 0.00 27.46 4.26
227 228 3.031660 CGTAGGGTGAAAGTCGCTC 57.968 57.895 0.00 0.00 0.00 5.03
228 229 2.232933 ATCCGTAGGGTGAAAGTCGCT 61.233 52.381 0.53 0.00 44.06 4.93
229 230 0.175073 ATCCGTAGGGTGAAAGTCGC 59.825 55.000 0.53 0.00 44.06 5.19
240 241 3.413221 AGAGCATCCATCCATCCGTAGG 61.413 54.545 0.00 0.00 45.31 3.18
241 242 1.898472 AGAGCATCCATCCATCCGTAG 59.102 52.381 0.00 0.00 33.66 3.51
242 243 2.015456 AGAGCATCCATCCATCCGTA 57.985 50.000 0.00 0.00 33.66 4.02
243 244 1.135094 AAGAGCATCCATCCATCCGT 58.865 50.000 0.00 0.00 33.66 4.69
244 245 1.878088 CAAAGAGCATCCATCCATCCG 59.122 52.381 0.00 0.00 33.66 4.18
245 246 3.147629 CTCAAAGAGCATCCATCCATCC 58.852 50.000 0.00 0.00 33.66 3.51
246 247 3.814283 GACTCAAAGAGCATCCATCCATC 59.186 47.826 0.00 0.00 33.66 3.51
247 248 3.201487 TGACTCAAAGAGCATCCATCCAT 59.799 43.478 0.00 0.00 33.66 3.41
248 249 2.573009 TGACTCAAAGAGCATCCATCCA 59.427 45.455 0.00 0.00 33.66 3.41
249 250 3.272574 TGACTCAAAGAGCATCCATCC 57.727 47.619 0.00 0.00 33.66 3.51
250 251 4.449131 TCATGACTCAAAGAGCATCCATC 58.551 43.478 0.00 0.00 33.66 3.51
251 252 4.452825 CTCATGACTCAAAGAGCATCCAT 58.547 43.478 0.00 0.00 33.66 3.41
252 253 3.870274 CTCATGACTCAAAGAGCATCCA 58.130 45.455 0.00 0.00 33.66 3.41
258 259 2.008329 GCTGGCTCATGACTCAAAGAG 58.992 52.381 0.00 7.26 35.52 2.85
259 260 1.339438 GGCTGGCTCATGACTCAAAGA 60.339 52.381 0.00 0.00 0.00 2.52
260 261 1.093159 GGCTGGCTCATGACTCAAAG 58.907 55.000 0.00 0.00 0.00 2.77
261 262 0.694771 AGGCTGGCTCATGACTCAAA 59.305 50.000 0.00 0.00 0.00 2.69
262 263 0.251354 GAGGCTGGCTCATGACTCAA 59.749 55.000 24.49 0.00 0.00 3.02
263 264 0.906282 TGAGGCTGGCTCATGACTCA 60.906 55.000 27.63 6.41 33.05 3.41
264 265 0.251354 TTGAGGCTGGCTCATGACTC 59.749 55.000 30.88 6.12 0.00 3.36
265 266 0.694771 TTTGAGGCTGGCTCATGACT 59.305 50.000 30.88 0.00 0.00 3.41
266 267 0.807496 GTTTGAGGCTGGCTCATGAC 59.193 55.000 30.88 26.21 0.00 3.06
267 268 0.322816 GGTTTGAGGCTGGCTCATGA 60.323 55.000 30.88 20.69 0.00 3.07
268 269 0.609957 TGGTTTGAGGCTGGCTCATG 60.610 55.000 30.88 0.00 0.00 3.07
269 270 0.112995 TTGGTTTGAGGCTGGCTCAT 59.887 50.000 30.88 0.00 0.00 2.90
270 271 0.538057 CTTGGTTTGAGGCTGGCTCA 60.538 55.000 27.63 27.63 0.00 4.26
271 272 1.871126 GCTTGGTTTGAGGCTGGCTC 61.871 60.000 22.95 22.95 0.00 4.70
272 273 1.905354 GCTTGGTTTGAGGCTGGCT 60.905 57.895 2.24 2.24 0.00 4.75
273 274 1.466851 AAGCTTGGTTTGAGGCTGGC 61.467 55.000 0.00 0.00 35.08 4.85
274 275 1.000171 GAAAGCTTGGTTTGAGGCTGG 60.000 52.381 0.00 0.00 35.08 4.85
275 276 1.000171 GGAAAGCTTGGTTTGAGGCTG 60.000 52.381 0.00 0.00 35.08 4.85
276 277 1.332195 GGAAAGCTTGGTTTGAGGCT 58.668 50.000 0.00 0.00 36.53 4.58
277 278 0.318441 GGGAAAGCTTGGTTTGAGGC 59.682 55.000 0.00 0.00 0.00 4.70
278 279 1.889170 GAGGGAAAGCTTGGTTTGAGG 59.111 52.381 0.00 0.00 0.00 3.86
279 280 1.889170 GGAGGGAAAGCTTGGTTTGAG 59.111 52.381 0.00 0.00 0.00 3.02
280 281 1.216678 TGGAGGGAAAGCTTGGTTTGA 59.783 47.619 0.00 0.00 0.00 2.69
281 282 1.703411 TGGAGGGAAAGCTTGGTTTG 58.297 50.000 0.00 0.00 0.00 2.93
282 283 2.250924 CATGGAGGGAAAGCTTGGTTT 58.749 47.619 0.00 0.00 0.00 3.27
283 284 1.928868 CATGGAGGGAAAGCTTGGTT 58.071 50.000 0.00 0.00 0.00 3.67
284 285 0.613012 GCATGGAGGGAAAGCTTGGT 60.613 55.000 0.00 0.00 0.00 3.67
285 286 0.612732 TGCATGGAGGGAAAGCTTGG 60.613 55.000 0.00 0.00 0.00 3.61
286 287 1.136305 CATGCATGGAGGGAAAGCTTG 59.864 52.381 19.40 0.00 0.00 4.01
287 288 1.481871 CATGCATGGAGGGAAAGCTT 58.518 50.000 19.40 0.00 0.00 3.74
288 289 3.202548 CATGCATGGAGGGAAAGCT 57.797 52.632 19.40 0.00 0.00 3.74
299 300 0.757561 TTGGGATGGAGCCATGCATG 60.758 55.000 20.19 20.19 44.87 4.06
300 301 0.757935 GTTGGGATGGAGCCATGCAT 60.758 55.000 20.38 0.00 44.87 3.96
301 302 1.380246 GTTGGGATGGAGCCATGCA 60.380 57.895 20.38 6.27 44.87 3.96
302 303 2.129785 GGTTGGGATGGAGCCATGC 61.130 63.158 12.05 12.05 42.82 4.06
303 304 1.039233 GTGGTTGGGATGGAGCCATG 61.039 60.000 6.76 0.00 36.70 3.66
304 305 1.307647 GTGGTTGGGATGGAGCCAT 59.692 57.895 0.71 0.71 39.69 4.40
305 306 2.159490 TGTGGTTGGGATGGAGCCA 61.159 57.895 0.00 0.00 0.00 4.75
306 307 1.678970 GTGTGGTTGGGATGGAGCC 60.679 63.158 0.00 0.00 0.00 4.70
307 308 0.323725 ATGTGTGGTTGGGATGGAGC 60.324 55.000 0.00 0.00 0.00 4.70
308 309 1.820519 CAATGTGTGGTTGGGATGGAG 59.179 52.381 0.00 0.00 0.00 3.86
309 310 1.549722 CCAATGTGTGGTTGGGATGGA 60.550 52.381 0.00 0.00 43.20 3.41
310 311 0.896923 CCAATGTGTGGTTGGGATGG 59.103 55.000 0.00 0.00 43.20 3.51
320 321 0.955428 CCTGGTCCGTCCAATGTGTG 60.955 60.000 0.00 0.00 46.59 3.82
321 322 1.125093 TCCTGGTCCGTCCAATGTGT 61.125 55.000 0.00 0.00 46.59 3.72
322 323 0.391661 CTCCTGGTCCGTCCAATGTG 60.392 60.000 0.00 0.00 46.59 3.21
323 324 1.983224 CTCCTGGTCCGTCCAATGT 59.017 57.895 0.00 0.00 46.59 2.71
324 325 1.450312 GCTCCTGGTCCGTCCAATG 60.450 63.158 0.00 0.00 46.59 2.82
325 326 1.613630 AGCTCCTGGTCCGTCCAAT 60.614 57.895 0.00 0.00 46.59 3.16
326 327 2.203788 AGCTCCTGGTCCGTCCAA 60.204 61.111 0.00 0.00 46.59 3.53
327 328 2.997315 CAGCTCCTGGTCCGTCCA 60.997 66.667 0.00 0.00 45.01 4.02
328 329 1.255667 TAACAGCTCCTGGTCCGTCC 61.256 60.000 0.00 0.00 35.51 4.79
329 330 0.173708 CTAACAGCTCCTGGTCCGTC 59.826 60.000 0.00 0.00 35.51 4.79
330 331 0.251653 TCTAACAGCTCCTGGTCCGT 60.252 55.000 0.00 0.00 35.51 4.69
331 332 0.173708 GTCTAACAGCTCCTGGTCCG 59.826 60.000 0.00 0.00 35.51 4.79
332 333 1.267121 TGTCTAACAGCTCCTGGTCC 58.733 55.000 0.00 0.00 35.51 4.46
333 334 2.763448 AGATGTCTAACAGCTCCTGGTC 59.237 50.000 0.00 0.00 41.62 4.02
334 335 2.826488 AGATGTCTAACAGCTCCTGGT 58.174 47.619 0.00 0.00 41.62 4.00
335 336 3.957497 AGTAGATGTCTAACAGCTCCTGG 59.043 47.826 0.48 0.00 41.62 4.45
336 337 4.260990 CGAGTAGATGTCTAACAGCTCCTG 60.261 50.000 0.48 0.00 41.62 3.86
337 338 3.880490 CGAGTAGATGTCTAACAGCTCCT 59.120 47.826 0.48 0.00 41.62 3.69
338 339 3.878103 TCGAGTAGATGTCTAACAGCTCC 59.122 47.826 0.48 0.00 41.62 4.70
339 340 4.553938 GCTCGAGTAGATGTCTAACAGCTC 60.554 50.000 15.13 0.00 41.62 4.09
341 342 3.065510 TGCTCGAGTAGATGTCTAACAGC 59.934 47.826 15.13 0.00 34.13 4.40
342 343 4.884458 TGCTCGAGTAGATGTCTAACAG 57.116 45.455 15.13 0.00 0.00 3.16
343 344 4.640647 ACATGCTCGAGTAGATGTCTAACA 59.359 41.667 15.13 0.00 0.00 2.41
344 345 5.176407 ACATGCTCGAGTAGATGTCTAAC 57.824 43.478 15.13 0.00 0.00 2.34
345 346 5.582550 CAACATGCTCGAGTAGATGTCTAA 58.417 41.667 20.20 0.00 30.46 2.10
346 347 4.498177 GCAACATGCTCGAGTAGATGTCTA 60.498 45.833 20.20 0.00 40.96 2.59
347 348 3.736433 GCAACATGCTCGAGTAGATGTCT 60.736 47.826 20.20 11.87 40.96 3.41
348 349 2.537625 GCAACATGCTCGAGTAGATGTC 59.462 50.000 20.20 10.32 40.96 3.06
349 350 2.094026 TGCAACATGCTCGAGTAGATGT 60.094 45.455 15.13 15.95 45.31 3.06
350 351 2.283617 GTGCAACATGCTCGAGTAGATG 59.716 50.000 15.13 15.34 45.31 2.90
351 352 2.167281 AGTGCAACATGCTCGAGTAGAT 59.833 45.455 15.13 0.00 45.31 1.98
352 353 1.546029 AGTGCAACATGCTCGAGTAGA 59.454 47.619 15.13 0.00 45.31 2.59
353 354 2.001812 AGTGCAACATGCTCGAGTAG 57.998 50.000 15.13 6.82 45.31 2.57
354 355 2.068519 CAAGTGCAACATGCTCGAGTA 58.931 47.619 15.13 10.57 45.31 2.59
355 356 0.870393 CAAGTGCAACATGCTCGAGT 59.130 50.000 15.13 0.00 45.31 4.18
356 357 0.870393 ACAAGTGCAACATGCTCGAG 59.130 50.000 8.45 8.45 45.31 4.04
357 358 0.587768 CACAAGTGCAACATGCTCGA 59.412 50.000 3.78 0.00 45.31 4.04
358 359 0.308684 ACACAAGTGCAACATGCTCG 59.691 50.000 3.78 0.00 45.31 5.03
359 360 2.807967 TCTACACAAGTGCAACATGCTC 59.192 45.455 3.78 0.00 45.31 4.26
360 361 2.849942 TCTACACAAGTGCAACATGCT 58.150 42.857 3.78 0.00 45.31 3.79
361 362 3.189080 TCATCTACACAAGTGCAACATGC 59.811 43.478 0.00 0.00 39.57 4.06
362 363 4.670992 GCTCATCTACACAAGTGCAACATG 60.671 45.833 0.00 0.00 42.14 3.21
363 364 3.438087 GCTCATCTACACAAGTGCAACAT 59.562 43.478 0.00 0.00 41.43 2.71
364 365 2.807967 GCTCATCTACACAAGTGCAACA 59.192 45.455 0.00 0.00 41.43 3.33
365 366 3.070018 AGCTCATCTACACAAGTGCAAC 58.930 45.455 0.00 0.00 0.00 4.17
366 367 3.069289 CAGCTCATCTACACAAGTGCAA 58.931 45.455 0.00 0.00 0.00 4.08
367 368 2.691927 CAGCTCATCTACACAAGTGCA 58.308 47.619 0.00 0.00 0.00 4.57
368 369 1.396301 GCAGCTCATCTACACAAGTGC 59.604 52.381 0.00 0.00 0.00 4.40
369 370 1.657594 CGCAGCTCATCTACACAAGTG 59.342 52.381 0.00 0.00 0.00 3.16
370 371 1.546029 TCGCAGCTCATCTACACAAGT 59.454 47.619 0.00 0.00 0.00 3.16
371 372 2.191802 CTCGCAGCTCATCTACACAAG 58.808 52.381 0.00 0.00 0.00 3.16
372 373 1.134995 CCTCGCAGCTCATCTACACAA 60.135 52.381 0.00 0.00 0.00 3.33
373 374 0.457443 CCTCGCAGCTCATCTACACA 59.543 55.000 0.00 0.00 0.00 3.72
374 375 0.249238 CCCTCGCAGCTCATCTACAC 60.249 60.000 0.00 0.00 0.00 2.90
375 376 1.395045 CCCCTCGCAGCTCATCTACA 61.395 60.000 0.00 0.00 0.00 2.74
376 377 1.109920 TCCCCTCGCAGCTCATCTAC 61.110 60.000 0.00 0.00 0.00 2.59
377 378 0.825425 CTCCCCTCGCAGCTCATCTA 60.825 60.000 0.00 0.00 0.00 1.98
378 379 2.042537 TCCCCTCGCAGCTCATCT 60.043 61.111 0.00 0.00 0.00 2.90
379 380 2.420890 CTCCCCTCGCAGCTCATC 59.579 66.667 0.00 0.00 0.00 2.92
380 381 3.859414 GCTCCCCTCGCAGCTCAT 61.859 66.667 0.00 0.00 32.48 2.90
402 403 1.666872 GTGAACAAGTCCGGGTCCG 60.667 63.158 0.00 1.86 39.44 4.79
403 404 0.108019 AAGTGAACAAGTCCGGGTCC 59.892 55.000 0.00 0.00 0.00 4.46
404 405 1.226746 CAAGTGAACAAGTCCGGGTC 58.773 55.000 0.00 0.00 0.00 4.46
405 406 0.179029 CCAAGTGAACAAGTCCGGGT 60.179 55.000 0.00 0.00 0.00 5.28
406 407 0.889186 CCCAAGTGAACAAGTCCGGG 60.889 60.000 0.00 0.00 0.00 5.73
407 408 0.889186 CCCCAAGTGAACAAGTCCGG 60.889 60.000 0.00 0.00 0.00 5.14
408 409 1.515521 GCCCCAAGTGAACAAGTCCG 61.516 60.000 0.00 0.00 0.00 4.79
409 410 1.515521 CGCCCCAAGTGAACAAGTCC 61.516 60.000 0.00 0.00 0.00 3.85
410 411 0.818040 ACGCCCCAAGTGAACAAGTC 60.818 55.000 0.00 0.00 0.00 3.01
411 412 1.101049 CACGCCCCAAGTGAACAAGT 61.101 55.000 0.00 0.00 41.83 3.16
412 413 1.101049 ACACGCCCCAAGTGAACAAG 61.101 55.000 3.20 0.00 41.83 3.16
413 414 0.681564 AACACGCCCCAAGTGAACAA 60.682 50.000 3.20 0.00 41.83 2.83
414 415 0.681564 AAACACGCCCCAAGTGAACA 60.682 50.000 3.20 0.00 41.83 3.18
415 416 0.248866 CAAACACGCCCCAAGTGAAC 60.249 55.000 3.20 0.00 41.83 3.18
416 417 1.388065 CCAAACACGCCCCAAGTGAA 61.388 55.000 3.20 0.00 41.83 3.18
423 424 4.293648 GGCAACCAAACACGCCCC 62.294 66.667 0.00 0.00 38.67 5.80
501 505 3.372730 GCGATGCAGGCCCAACAA 61.373 61.111 0.00 0.00 0.00 2.83
551 555 1.582610 GCCAATCCGAGCGTTTCCAA 61.583 55.000 0.00 0.00 0.00 3.53
578 583 4.383861 CACTCAGCCTGGCTCGCA 62.384 66.667 20.49 4.70 36.40 5.10
636 641 4.320456 CCATCTCCCGCCATCCCG 62.320 72.222 0.00 0.00 0.00 5.14
721 730 0.121402 AGTAGGGAAGAAAGGGGGCT 59.879 55.000 0.00 0.00 0.00 5.19
934 959 2.770232 ACACCTAGCTTAACCGCCTAAT 59.230 45.455 0.00 0.00 0.00 1.73
941 966 3.887716 TCGATCCTACACCTAGCTTAACC 59.112 47.826 0.00 0.00 0.00 2.85
1008 1033 3.336468 CTGGATTATCAGCCTCATCTGC 58.664 50.000 0.00 0.00 34.19 4.26
1099 1124 1.788229 TAGCGGATCAATGGTCTCCA 58.212 50.000 0.00 0.00 38.19 3.86
1133 1158 1.383248 ATCCTCTCCTGTTCCCGGG 60.383 63.158 16.85 16.85 38.61 5.73
1153 1179 8.507249 GCAGTTGTAGATGTAGTTCAGATTTTT 58.493 33.333 0.00 0.00 0.00 1.94
1290 1316 4.225942 AGGAATATGACCACTTGCTCTTCA 59.774 41.667 0.00 0.00 0.00 3.02
1308 1334 1.203162 TGGCCAACAACATGGAGGAAT 60.203 47.619 0.61 0.00 43.54 3.01
1373 1400 3.495434 AGTACCTAGAGATGGTCTCCG 57.505 52.381 3.47 0.00 44.42 4.63
1457 1484 0.744771 GCGAATCTTGGGTGGAGTCC 60.745 60.000 0.73 0.73 0.00 3.85
1631 1664 4.896482 ACAGACTGTGACCTAAGAACTCTT 59.104 41.667 7.47 0.00 39.85 2.85
1639 1672 5.014202 TGTATGCTACAGACTGTGACCTAA 58.986 41.667 18.58 0.00 34.06 2.69
1654 1687 2.320781 GCTTCCTCCTCCTGTATGCTA 58.679 52.381 0.00 0.00 0.00 3.49
1665 1698 1.002544 GCTTGTGTAGTGCTTCCTCCT 59.997 52.381 0.00 0.00 0.00 3.69
1823 1856 3.118531 ACCAGCATCTCCAAGGTAGAAT 58.881 45.455 0.00 0.00 0.00 2.40
1844 1877 3.569194 ATACCCGACCAACATGCATAA 57.431 42.857 0.00 0.00 0.00 1.90
1880 1913 5.127491 TCGTTGAGATGGTACCTTGTTTTT 58.873 37.500 14.36 0.00 0.00 1.94
1962 1995 4.382147 CCTCTCAACAGTTACTCTAAGGCC 60.382 50.000 0.00 0.00 0.00 5.19
2004 2038 7.308450 TCTGATCCAGGATCTTAAACCTATG 57.692 40.000 26.94 7.34 39.56 2.23
2047 2081 4.048970 AGAACTAGCCTAACCTGAGTGA 57.951 45.455 0.00 0.00 0.00 3.41
2059 2093 2.338140 GCAACAAGCAAGAACTAGCC 57.662 50.000 0.00 0.00 44.79 3.93
2178 2212 1.888512 AGCGTCATTGTCAAATGCCTT 59.111 42.857 0.00 0.00 42.55 4.35
2212 2246 2.900106 GCCTCTGCCCACTCCAACT 61.900 63.158 0.00 0.00 0.00 3.16
2263 2297 5.829924 TGCTTCTTGTTCTTCTTCCATCTTT 59.170 36.000 0.00 0.00 0.00 2.52
2312 2377 5.254267 TCTTCCTCTTCCTCTCCTCTTCTTA 59.746 44.000 0.00 0.00 0.00 2.10
2440 2510 2.135933 GAACATGTAGCGCCATCTACC 58.864 52.381 2.29 0.00 38.46 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.