Multiple sequence alignment - TraesCS6D01G001700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G001700 chr6D 100.000 4586 0 0 1 4586 804502 809087 0.000000e+00 8469.0
1 TraesCS6D01G001700 chr6B 92.337 2336 105 23 1423 3705 3385266 3387580 0.000000e+00 3254.0
2 TraesCS6D01G001700 chr6B 87.201 1461 73 39 3 1389 3383842 3385262 0.000000e+00 1557.0
3 TraesCS6D01G001700 chr6B 87.901 405 26 6 3886 4290 3387637 3388018 5.410000e-124 455.0
4 TraesCS6D01G001700 chr6B 85.616 146 14 4 4427 4565 3388141 3388286 3.700000e-31 147.0
5 TraesCS6D01G001700 chr6B 95.745 47 1 1 3396 3442 687291358 687291313 1.770000e-09 75.0
6 TraesCS6D01G001700 chr6B 80.851 94 15 3 1532 1625 663794587 663794677 2.290000e-08 71.3
7 TraesCS6D01G001700 chr6A 92.264 2314 105 23 1445 3705 288678 290970 0.000000e+00 3214.0
8 TraesCS6D01G001700 chr6A 87.579 1433 59 36 38 1389 287269 288663 0.000000e+00 1550.0
9 TraesCS6D01G001700 chr6A 87.901 405 26 6 3886 4290 291027 291408 5.410000e-124 455.0
10 TraesCS6D01G001700 chr6A 94.545 55 3 0 4440 4494 291547 291601 8.170000e-13 86.1
11 TraesCS6D01G001700 chr5B 91.152 972 67 14 2243 3207 402845776 402844817 0.000000e+00 1301.0
12 TraesCS6D01G001700 chr5B 94.393 107 5 1 3700 3805 316712705 316712599 3.670000e-36 163.0
13 TraesCS6D01G001700 chr4A 86.120 317 24 15 159 464 732780501 732780808 1.590000e-84 324.0
14 TraesCS6D01G001700 chr4A 80.851 94 15 3 1532 1625 592757106 592757196 2.290000e-08 71.3
15 TraesCS6D01G001700 chr4A 80.851 94 15 3 1532 1625 593045185 593045275 2.290000e-08 71.3
16 TraesCS6D01G001700 chr7A 86.469 303 28 11 159 453 8382850 8383147 2.060000e-83 320.0
17 TraesCS6D01G001700 chr7D 95.477 199 9 0 163 361 7455484 7455682 7.400000e-83 318.0
18 TraesCS6D01G001700 chr7D 77.154 499 69 21 163 658 632354701 632355157 9.850000e-62 248.0
19 TraesCS6D01G001700 chr7D 77.154 499 68 21 163 658 632363092 632363547 9.850000e-62 248.0
20 TraesCS6D01G001700 chr7D 98.214 56 0 1 1 55 109921582 109921637 3.780000e-16 97.1
21 TraesCS6D01G001700 chr7D 94.643 56 2 1 1 55 60105914 60105859 8.170000e-13 86.1
22 TraesCS6D01G001700 chr2B 91.477 176 15 0 184 359 634644376 634644551 4.580000e-60 243.0
23 TraesCS6D01G001700 chr2A 88.710 186 21 0 184 369 744687286 744687101 1.280000e-55 228.0
24 TraesCS6D01G001700 chr2A 95.192 104 5 0 3704 3807 68155824 68155927 1.020000e-36 165.0
25 TraesCS6D01G001700 chr2A 89.873 79 5 3 498 575 748817083 748817159 1.050000e-16 99.0
26 TraesCS6D01G001700 chr2A 91.489 47 4 0 1243 1289 770683237 770683191 1.060000e-06 65.8
27 TraesCS6D01G001700 chr2D 81.435 237 30 10 500 733 606116319 606116544 1.010000e-41 182.0
28 TraesCS6D01G001700 chr4D 95.327 107 4 1 3701 3806 494042369 494042475 7.890000e-38 169.0
29 TraesCS6D01G001700 chr7B 96.117 103 3 1 3704 3806 181033686 181033585 2.840000e-37 167.0
30 TraesCS6D01G001700 chr1B 91.525 118 8 2 3704 3819 215844635 215844752 1.320000e-35 161.0
31 TraesCS6D01G001700 chr1B 92.727 110 8 0 3695 3804 359902039 359902148 4.750000e-35 159.0
32 TraesCS6D01G001700 chr1A 92.174 115 8 1 3687 3801 351606746 351606859 1.320000e-35 161.0
33 TraesCS6D01G001700 chrUn 88.800 125 9 5 3686 3806 89396747 89396870 1.030000e-31 148.0
34 TraesCS6D01G001700 chrUn 80.851 94 15 3 1532 1625 332731891 332731981 2.290000e-08 71.3
35 TraesCS6D01G001700 chr5D 87.218 133 13 4 3704 3833 231925936 231925805 1.030000e-31 148.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G001700 chr6D 804502 809087 4585 False 8469.000 8469 100.00000 1 4586 1 chr6D.!!$F1 4585
1 TraesCS6D01G001700 chr6B 3383842 3388286 4444 False 1353.250 3254 88.26375 3 4565 4 chr6B.!!$F2 4562
2 TraesCS6D01G001700 chr6A 287269 291601 4332 False 1326.275 3214 90.57225 38 4494 4 chr6A.!!$F1 4456
3 TraesCS6D01G001700 chr5B 402844817 402845776 959 True 1301.000 1301 91.15200 2243 3207 1 chr5B.!!$R2 964

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
507 526 0.250295 AGGTGGTGTCGGTGAACATG 60.250 55.0 0.00 0.00 0.00 3.21 F
777 819 0.397564 TGTTGTGCCTGATGAGAGCA 59.602 50.0 0.00 0.00 0.00 4.26 F
1673 1759 0.503961 CCGTCGGTTACAACAACGTC 59.496 55.0 2.08 0.61 37.69 4.34 F
3024 3115 0.179150 TTGTTTGGTTGACTGCGTGC 60.179 50.0 0.00 0.00 0.00 5.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1676 1762 0.108186 TCCTGTTGGCAGCATCTACG 60.108 55.0 3.98 0.0 41.26 3.51 R
1812 1898 0.255890 ACACCCTGCATACACCCATC 59.744 55.0 0.00 0.0 0.00 3.51 R
3054 3145 1.009389 GCACGTTAAGAGCAGCGAGT 61.009 55.0 0.00 0.0 36.42 4.18 R
3880 4019 0.179062 GACAGATGCTACTGCCTGGG 60.179 60.0 9.83 0.0 41.06 4.45 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 6.852420 ATAGTTACTGCTTACTCCTCAACA 57.148 37.500 0.00 0.00 0.00 3.33
36 37 7.241042 AGTTACTGCTTACTCCTCAACATAA 57.759 36.000 0.00 0.00 0.00 1.90
42 43 6.166279 TGCTTACTCCTCAACATAAGTTCTG 58.834 40.000 0.00 0.00 35.28 3.02
45 46 3.274288 CTCCTCAACATAAGTTCTGGGC 58.726 50.000 0.00 0.00 35.28 5.36
55 56 5.416952 ACATAAGTTCTGGGCTTTGAATCAG 59.583 40.000 0.00 0.00 0.00 2.90
64 65 7.220030 TCTGGGCTTTGAATCAGTATCTATTC 58.780 38.462 0.00 0.00 33.57 1.75
85 86 9.806203 CTATTCATTAATGCATTCCTTGTTTCA 57.194 29.630 16.86 0.00 0.00 2.69
92 93 5.033589 TGCATTCCTTGTTTCATGGTTTT 57.966 34.783 0.00 0.00 31.64 2.43
93 94 6.166984 TGCATTCCTTGTTTCATGGTTTTA 57.833 33.333 0.00 0.00 31.64 1.52
94 95 6.222389 TGCATTCCTTGTTTCATGGTTTTAG 58.778 36.000 0.00 0.00 31.64 1.85
97 98 7.226523 GCATTCCTTGTTTCATGGTTTTAGTTT 59.773 33.333 0.00 0.00 31.64 2.66
99 100 7.654022 TCCTTGTTTCATGGTTTTAGTTTCT 57.346 32.000 0.00 0.00 31.64 2.52
100 101 8.754991 TCCTTGTTTCATGGTTTTAGTTTCTA 57.245 30.769 0.00 0.00 31.64 2.10
101 102 9.362151 TCCTTGTTTCATGGTTTTAGTTTCTAT 57.638 29.630 0.00 0.00 31.64 1.98
102 103 9.626045 CCTTGTTTCATGGTTTTAGTTTCTATC 57.374 33.333 0.00 0.00 0.00 2.08
144 154 9.897744 TTAGCTCTGTTCTTGTAAATGAAAATG 57.102 29.630 0.00 0.00 0.00 2.32
145 155 6.865205 AGCTCTGTTCTTGTAAATGAAAATGC 59.135 34.615 0.00 0.00 0.00 3.56
146 156 6.865205 GCTCTGTTCTTGTAAATGAAAATGCT 59.135 34.615 0.00 0.00 0.00 3.79
148 158 9.897744 CTCTGTTCTTGTAAATGAAAATGCTTA 57.102 29.630 0.00 0.00 0.00 3.09
177 195 0.985490 TTTGTTGCCCTTTTGCCCCT 60.985 50.000 0.00 0.00 0.00 4.79
222 241 3.655211 AAGGGGCTGCTGGACCTG 61.655 66.667 0.00 0.00 44.42 4.00
240 259 1.072159 GACCTGCCAGACTGTTGCT 59.928 57.895 0.93 0.00 0.00 3.91
372 391 2.175715 TGAGTAGAGGAGCATCTAGGCA 59.824 50.000 0.00 0.00 32.49 4.75
373 392 2.819608 GAGTAGAGGAGCATCTAGGCAG 59.180 54.545 0.00 0.00 32.49 4.85
374 393 1.892474 GTAGAGGAGCATCTAGGCAGG 59.108 57.143 0.00 0.00 32.49 4.85
375 394 1.120795 AGAGGAGCATCTAGGCAGGC 61.121 60.000 0.00 0.00 35.83 4.85
400 419 2.202298 CCGCCGCGTTGAATGAAC 60.202 61.111 12.58 0.00 0.00 3.18
429 448 3.180584 CGCTTAGTATTCGTCATGTCTGC 59.819 47.826 0.00 0.00 0.00 4.26
507 526 0.250295 AGGTGGTGTCGGTGAACATG 60.250 55.000 0.00 0.00 0.00 3.21
532 551 2.095919 GGTCAGTGGTTATGTTTGCGAC 60.096 50.000 0.00 0.00 0.00 5.19
556 575 4.710324 ACAAGAAAAACCTATCGTGGTCA 58.290 39.130 0.00 0.00 39.83 4.02
566 585 1.266178 ATCGTGGTCAGTGGTCATCA 58.734 50.000 0.00 0.00 0.00 3.07
598 617 6.037786 ACTGAATCTTAATCGTCAAGTGGA 57.962 37.500 0.00 0.00 0.00 4.02
611 630 2.694628 TCAAGTGGAATGCTTTGCTTGT 59.305 40.909 5.47 0.00 35.96 3.16
618 637 5.119125 GTGGAATGCTTTGCTTGTTTATCAC 59.881 40.000 5.47 0.00 0.00 3.06
620 639 4.870123 ATGCTTTGCTTGTTTATCACCA 57.130 36.364 0.00 0.00 0.00 4.17
644 663 3.549423 CCTGTTCTGATTGTTGCTGTGTG 60.549 47.826 0.00 0.00 0.00 3.82
659 678 4.225208 GCTGTGTGATTTGAGCTTCTTTC 58.775 43.478 0.00 0.00 0.00 2.62
676 695 7.032377 CTTCTTTCTTGAAGCTTAACAACCT 57.968 36.000 0.00 0.00 37.27 3.50
677 696 6.377327 TCTTTCTTGAAGCTTAACAACCTG 57.623 37.500 0.00 0.00 35.24 4.00
678 697 5.885912 TCTTTCTTGAAGCTTAACAACCTGT 59.114 36.000 0.00 0.00 35.24 4.00
679 698 6.377146 TCTTTCTTGAAGCTTAACAACCTGTT 59.623 34.615 0.00 0.00 38.50 3.16
680 699 5.751243 TCTTGAAGCTTAACAACCTGTTC 57.249 39.130 0.00 0.00 40.22 3.18
681 700 5.437060 TCTTGAAGCTTAACAACCTGTTCT 58.563 37.500 0.00 0.00 40.22 3.01
682 701 5.527582 TCTTGAAGCTTAACAACCTGTTCTC 59.472 40.000 0.00 0.00 40.22 2.87
683 702 5.036117 TGAAGCTTAACAACCTGTTCTCT 57.964 39.130 0.00 0.00 40.22 3.10
684 703 5.437060 TGAAGCTTAACAACCTGTTCTCTT 58.563 37.500 0.00 0.00 40.22 2.85
685 704 6.588204 TGAAGCTTAACAACCTGTTCTCTTA 58.412 36.000 0.00 0.00 40.22 2.10
686 705 7.051623 TGAAGCTTAACAACCTGTTCTCTTAA 58.948 34.615 0.00 0.00 40.22 1.85
687 706 7.719633 TGAAGCTTAACAACCTGTTCTCTTAAT 59.280 33.333 0.00 0.00 40.22 1.40
688 707 7.674471 AGCTTAACAACCTGTTCTCTTAATC 57.326 36.000 0.00 0.00 40.22 1.75
698 717 4.194640 TGTTCTCTTAATCTGGATGCTGC 58.805 43.478 0.00 0.00 0.00 5.25
733 753 9.374838 GATTGGAATATTTGCAGATTTCTGTTT 57.625 29.630 9.21 0.00 45.45 2.83
735 755 9.638239 TTGGAATATTTGCAGATTTCTGTTTAC 57.362 29.630 9.21 0.00 45.45 2.01
736 756 9.023962 TGGAATATTTGCAGATTTCTGTTTACT 57.976 29.630 9.21 0.00 45.45 2.24
737 757 9.294030 GGAATATTTGCAGATTTCTGTTTACTG 57.706 33.333 9.21 0.00 45.45 2.74
741 761 8.947055 ATTTGCAGATTTCTGTTTACTGTTTT 57.053 26.923 9.21 0.00 45.45 2.43
743 763 7.754069 TGCAGATTTCTGTTTACTGTTTTTG 57.246 32.000 9.21 0.00 45.45 2.44
745 765 6.756542 GCAGATTTCTGTTTACTGTTTTTGGT 59.243 34.615 9.21 0.00 45.45 3.67
746 766 7.277760 GCAGATTTCTGTTTACTGTTTTTGGTT 59.722 33.333 9.21 0.00 45.45 3.67
747 767 9.796120 CAGATTTCTGTTTACTGTTTTTGGTTA 57.204 29.630 0.00 0.00 39.09 2.85
770 812 8.840321 GTTATATATGTTTCTGTTGTGCCTGAT 58.160 33.333 0.00 0.00 0.00 2.90
771 813 3.928727 ATGTTTCTGTTGTGCCTGATG 57.071 42.857 0.00 0.00 0.00 3.07
772 814 2.929641 TGTTTCTGTTGTGCCTGATGA 58.070 42.857 0.00 0.00 0.00 2.92
773 815 2.880268 TGTTTCTGTTGTGCCTGATGAG 59.120 45.455 0.00 0.00 0.00 2.90
774 816 3.141398 GTTTCTGTTGTGCCTGATGAGA 58.859 45.455 0.00 0.00 0.00 3.27
775 817 2.756840 TCTGTTGTGCCTGATGAGAG 57.243 50.000 0.00 0.00 0.00 3.20
776 818 1.085091 CTGTTGTGCCTGATGAGAGC 58.915 55.000 0.00 0.00 0.00 4.09
777 819 0.397564 TGTTGTGCCTGATGAGAGCA 59.602 50.000 0.00 0.00 0.00 4.26
778 820 1.202794 TGTTGTGCCTGATGAGAGCAA 60.203 47.619 0.00 0.00 38.45 3.91
779 821 1.881973 GTTGTGCCTGATGAGAGCAAA 59.118 47.619 0.00 0.00 38.45 3.68
789 841 5.632347 CCTGATGAGAGCAAACAAATTGTTC 59.368 40.000 12.11 0.65 46.30 3.18
810 862 1.340405 TGGGCCTCTGATTTCTGAAGC 60.340 52.381 4.53 0.79 32.59 3.86
811 863 1.387539 GGCCTCTGATTTCTGAAGCC 58.612 55.000 10.23 10.23 41.81 4.35
942 995 0.749454 ATCCTGGCGCCTCATGTTTC 60.749 55.000 29.70 0.00 0.00 2.78
961 1014 6.467677 TGTTTCCTTCTCAACCTGATAAGAG 58.532 40.000 3.98 0.00 33.86 2.85
1175 1261 1.963338 GGTGCGCTGCTCTGTTTCT 60.963 57.895 9.73 0.00 0.00 2.52
1197 1283 1.066002 TGCTGTTGCTTGCTCTGTTTC 59.934 47.619 0.00 0.00 40.48 2.78
1232 1318 9.234384 GATGATAACAGATGCTGAATTTTCTTG 57.766 33.333 0.82 0.00 35.18 3.02
1281 1367 4.023291 AGAAGAAGACCATCCTCTCTGTC 58.977 47.826 0.00 0.00 0.00 3.51
1389 1475 6.834168 ATGAATTTTCTTGTCGTGGGTTAT 57.166 33.333 0.00 0.00 0.00 1.89
1392 1478 6.711194 TGAATTTTCTTGTCGTGGGTTATGTA 59.289 34.615 0.00 0.00 0.00 2.29
1393 1479 7.228906 TGAATTTTCTTGTCGTGGGTTATGTAA 59.771 33.333 0.00 0.00 0.00 2.41
1394 1480 5.927954 TTTCTTGTCGTGGGTTATGTAAC 57.072 39.130 0.00 0.00 35.50 2.50
1395 1481 3.577667 TCTTGTCGTGGGTTATGTAACG 58.422 45.455 0.00 0.00 37.07 3.18
1396 1482 2.367030 TGTCGTGGGTTATGTAACGG 57.633 50.000 0.00 0.00 37.07 4.44
1397 1483 1.891811 TGTCGTGGGTTATGTAACGGA 59.108 47.619 0.00 0.00 37.07 4.69
1398 1484 2.094597 TGTCGTGGGTTATGTAACGGAG 60.095 50.000 0.00 0.00 37.07 4.63
1399 1485 1.477700 TCGTGGGTTATGTAACGGAGG 59.522 52.381 0.00 0.00 37.07 4.30
1400 1486 1.472026 CGTGGGTTATGTAACGGAGGG 60.472 57.143 0.00 0.00 37.07 4.30
1401 1487 1.832998 GTGGGTTATGTAACGGAGGGA 59.167 52.381 0.00 0.00 37.07 4.20
1402 1488 2.112998 TGGGTTATGTAACGGAGGGAG 58.887 52.381 0.00 0.00 37.07 4.30
1403 1489 2.113807 GGGTTATGTAACGGAGGGAGT 58.886 52.381 0.00 0.00 37.07 3.85
1404 1490 3.299503 GGGTTATGTAACGGAGGGAGTA 58.700 50.000 0.00 0.00 37.07 2.59
1405 1491 3.068732 GGGTTATGTAACGGAGGGAGTAC 59.931 52.174 0.00 0.00 37.07 2.73
1406 1492 3.956848 GGTTATGTAACGGAGGGAGTACT 59.043 47.826 0.00 0.00 37.07 2.73
1407 1493 4.403752 GGTTATGTAACGGAGGGAGTACTT 59.596 45.833 0.00 0.00 37.07 2.24
1408 1494 5.346522 GTTATGTAACGGAGGGAGTACTTG 58.653 45.833 0.00 0.00 0.00 3.16
1409 1495 2.880443 TGTAACGGAGGGAGTACTTGT 58.120 47.619 0.00 0.00 0.00 3.16
1410 1496 4.032960 TGTAACGGAGGGAGTACTTGTA 57.967 45.455 0.00 0.00 0.00 2.41
1411 1497 4.603131 TGTAACGGAGGGAGTACTTGTAT 58.397 43.478 0.00 0.00 0.00 2.29
1412 1498 5.018809 TGTAACGGAGGGAGTACTTGTATT 58.981 41.667 0.00 0.00 0.00 1.89
1413 1499 6.186957 TGTAACGGAGGGAGTACTTGTATTA 58.813 40.000 0.00 0.00 0.00 0.98
1414 1500 5.848833 AACGGAGGGAGTACTTGTATTAG 57.151 43.478 0.00 0.00 0.00 1.73
1415 1501 4.213513 ACGGAGGGAGTACTTGTATTAGG 58.786 47.826 0.00 0.00 0.00 2.69
1416 1502 4.213513 CGGAGGGAGTACTTGTATTAGGT 58.786 47.826 0.00 0.00 0.00 3.08
1417 1503 4.648307 CGGAGGGAGTACTTGTATTAGGTT 59.352 45.833 0.00 0.00 0.00 3.50
1418 1504 5.451520 CGGAGGGAGTACTTGTATTAGGTTG 60.452 48.000 0.00 0.00 0.00 3.77
1419 1505 5.424573 GGAGGGAGTACTTGTATTAGGTTGT 59.575 44.000 0.00 0.00 0.00 3.32
1420 1506 6.070366 GGAGGGAGTACTTGTATTAGGTTGTT 60.070 42.308 0.00 0.00 0.00 2.83
1421 1507 6.708285 AGGGAGTACTTGTATTAGGTTGTTG 58.292 40.000 0.00 0.00 0.00 3.33
1435 1521 8.617290 ATTAGGTTGTTGTACTGTCCTAAAAG 57.383 34.615 14.33 0.00 39.74 2.27
1673 1759 0.503961 CCGTCGGTTACAACAACGTC 59.496 55.000 2.08 0.61 37.69 4.34
1676 1762 1.187921 GTCGGTTACAACAACGTCGAC 59.812 52.381 5.18 5.18 38.61 4.20
1734 1820 1.207089 ACACGCCTGTATGTAGCACAT 59.793 47.619 6.93 6.93 42.35 3.21
1789 1875 4.903054 TGATGAATGTTGCTCTGAAGTCT 58.097 39.130 0.00 0.00 0.00 3.24
1803 1889 6.679146 GCTCTGAAGTCTGAATCTCGTGATTA 60.679 42.308 12.39 0.00 42.43 1.75
1812 1898 5.299949 TGAATCTCGTGATTACCATGATGG 58.700 41.667 10.53 10.53 42.43 3.51
1838 1924 3.307480 GGTGTATGCAGGGTGTTCTTACT 60.307 47.826 0.00 0.00 0.00 2.24
1940 2026 1.655329 CCTCTACGACGGATGGCTC 59.345 63.158 0.00 0.00 0.00 4.70
1956 2042 2.523168 TCCCGCACCTGTGAGTGA 60.523 61.111 0.51 0.00 40.34 3.41
1958 2044 1.003355 CCCGCACCTGTGAGTGATT 60.003 57.895 0.51 0.00 40.34 2.57
1968 2054 2.479275 CTGTGAGTGATTGACTGCTGTG 59.521 50.000 0.00 0.00 33.83 3.66
1974 2060 4.330250 AGTGATTGACTGCTGTGCTATTT 58.670 39.130 0.00 0.00 31.75 1.40
1977 2063 7.275183 AGTGATTGACTGCTGTGCTATTTATA 58.725 34.615 0.00 0.00 31.75 0.98
1991 2077 9.208022 TGTGCTATTTATACAGCTTGATATGTC 57.792 33.333 0.00 0.00 38.63 3.06
2159 2245 5.239525 GCAAGGATGATGGTACCACTTTATC 59.760 44.000 19.09 16.91 0.00 1.75
2171 2257 6.043938 GGTACCACTTTATCCATCCTCCATAA 59.956 42.308 7.15 0.00 0.00 1.90
2204 2290 5.392767 TCTCAAGCTAACCTGTTGAGTAG 57.607 43.478 8.72 0.00 44.98 2.57
2352 2438 6.999705 ATTACCTACCCATACCGATTTACA 57.000 37.500 0.00 0.00 0.00 2.41
2355 2441 3.323979 CCTACCCATACCGATTTACAGCT 59.676 47.826 0.00 0.00 0.00 4.24
2585 2671 9.545105 TTGCAATTTTCAAAATACAGATGAACT 57.455 25.926 0.00 0.00 33.13 3.01
2682 2770 2.259012 ACGTACCACCTGATAAACCCA 58.741 47.619 0.00 0.00 0.00 4.51
2754 2842 1.820906 CCCGGTGATCGACGAGGTA 60.821 63.158 3.01 0.00 42.43 3.08
2862 2950 2.012673 GCTGAGATGAAGAATGCCGTT 58.987 47.619 0.00 0.00 0.00 4.44
2895 2983 0.745486 TCGCATCTGCATCCAAGGTG 60.745 55.000 2.72 0.00 42.21 4.00
2969 3060 3.637694 TGGATTTGTACATCCATGCCATG 59.362 43.478 13.19 0.00 46.67 3.66
3019 3110 2.680841 TCTCCGTTTGTTTGGTTGACTG 59.319 45.455 0.00 0.00 0.00 3.51
3024 3115 0.179150 TTGTTTGGTTGACTGCGTGC 60.179 50.000 0.00 0.00 0.00 5.34
3026 3117 2.109739 TTTGGTTGACTGCGTGCGT 61.110 52.632 0.00 0.00 0.00 5.24
3027 3118 2.316361 TTTGGTTGACTGCGTGCGTG 62.316 55.000 0.00 0.00 0.00 5.34
3111 3202 5.349543 TGGATGATGATCGCTTAATCAATCG 59.650 40.000 0.00 0.00 39.04 3.34
3117 3208 4.917998 TGATCGCTTAATCAATCGAGTAGC 59.082 41.667 0.00 0.00 35.92 3.58
3124 3215 6.651225 GCTTAATCAATCGAGTAGCCCTTAAT 59.349 38.462 0.00 0.00 0.00 1.40
3125 3216 7.360438 GCTTAATCAATCGAGTAGCCCTTAATG 60.360 40.741 0.00 0.00 0.00 1.90
3153 3249 6.521151 TTGCTAAAGTAGTAGGTAGGTGAC 57.479 41.667 0.00 0.00 0.00 3.67
3207 3304 9.059260 GTTTGTTAAAACTGACAGGGTAAGATA 57.941 33.333 7.51 0.00 42.09 1.98
3321 3418 0.320771 CCAAGCAGCTCGGTAACTGT 60.321 55.000 0.00 0.00 36.26 3.55
3368 3481 9.809096 TGATCTTAGTTAGCTAAAGACATCTTG 57.191 33.333 7.99 0.00 36.82 3.02
3395 3508 6.886459 AGCTTGTATTGACTATTGATTGGTGT 59.114 34.615 0.00 0.00 0.00 4.16
3522 3641 6.613271 AGCTCCTTCCCAGTATATATGTATGG 59.387 42.308 0.00 1.00 0.00 2.74
3527 3646 7.071698 CCTTCCCAGTATATATGTATGGATGCT 59.928 40.741 12.05 0.00 32.55 3.79
3546 3665 3.230134 GCTCTCATCCTCATGGAGTAGT 58.770 50.000 0.00 0.00 46.91 2.73
3659 3798 4.408182 ACTTATACCCACTGCTTGCTAG 57.592 45.455 0.00 0.00 0.00 3.42
3699 3838 7.303261 CAAATTATGCTGTGATGTATGCTAGG 58.697 38.462 0.00 0.00 0.00 3.02
3704 3843 6.664428 TGCTGTGATGTATGCTAGGTATTA 57.336 37.500 0.00 0.00 0.00 0.98
3705 3844 6.455647 TGCTGTGATGTATGCTAGGTATTAC 58.544 40.000 0.00 0.00 0.00 1.89
3706 3845 6.267699 TGCTGTGATGTATGCTAGGTATTACT 59.732 38.462 0.00 0.00 0.00 2.24
3707 3846 6.809196 GCTGTGATGTATGCTAGGTATTACTC 59.191 42.308 0.00 0.00 0.00 2.59
3708 3847 7.228314 TGTGATGTATGCTAGGTATTACTCC 57.772 40.000 0.00 0.00 0.00 3.85
3709 3848 6.210784 TGTGATGTATGCTAGGTATTACTCCC 59.789 42.308 0.00 0.00 0.00 4.30
3710 3849 6.437793 GTGATGTATGCTAGGTATTACTCCCT 59.562 42.308 0.00 0.00 34.74 4.20
3711 3850 6.663953 TGATGTATGCTAGGTATTACTCCCTC 59.336 42.308 0.00 0.00 32.08 4.30
3712 3851 5.331069 TGTATGCTAGGTATTACTCCCTCC 58.669 45.833 0.00 0.00 32.08 4.30
3713 3852 2.872732 TGCTAGGTATTACTCCCTCCG 58.127 52.381 0.00 0.00 32.08 4.63
3714 3853 2.176364 TGCTAGGTATTACTCCCTCCGT 59.824 50.000 0.00 0.00 32.08 4.69
3715 3854 2.819019 GCTAGGTATTACTCCCTCCGTC 59.181 54.545 0.00 0.00 32.08 4.79
3716 3855 2.378378 AGGTATTACTCCCTCCGTCC 57.622 55.000 0.00 0.00 0.00 4.79
3717 3856 1.133231 AGGTATTACTCCCTCCGTCCC 60.133 57.143 0.00 0.00 0.00 4.46
3718 3857 1.412074 GGTATTACTCCCTCCGTCCCA 60.412 57.143 0.00 0.00 0.00 4.37
3719 3858 2.391678 GTATTACTCCCTCCGTCCCAA 58.608 52.381 0.00 0.00 0.00 4.12
3720 3859 1.961133 ATTACTCCCTCCGTCCCAAA 58.039 50.000 0.00 0.00 0.00 3.28
3721 3860 1.732117 TTACTCCCTCCGTCCCAAAA 58.268 50.000 0.00 0.00 0.00 2.44
3722 3861 1.961133 TACTCCCTCCGTCCCAAAAT 58.039 50.000 0.00 0.00 0.00 1.82
3723 3862 1.961133 ACTCCCTCCGTCCCAAAATA 58.039 50.000 0.00 0.00 0.00 1.40
3724 3863 2.271777 ACTCCCTCCGTCCCAAAATAA 58.728 47.619 0.00 0.00 0.00 1.40
3725 3864 2.238898 ACTCCCTCCGTCCCAAAATAAG 59.761 50.000 0.00 0.00 0.00 1.73
3726 3865 2.238898 CTCCCTCCGTCCCAAAATAAGT 59.761 50.000 0.00 0.00 0.00 2.24
3727 3866 2.026636 TCCCTCCGTCCCAAAATAAGTG 60.027 50.000 0.00 0.00 0.00 3.16
3728 3867 2.290705 CCCTCCGTCCCAAAATAAGTGT 60.291 50.000 0.00 0.00 0.00 3.55
3729 3868 3.007635 CCTCCGTCCCAAAATAAGTGTC 58.992 50.000 0.00 0.00 0.00 3.67
3730 3869 3.307480 CCTCCGTCCCAAAATAAGTGTCT 60.307 47.826 0.00 0.00 0.00 3.41
3731 3870 4.324267 CTCCGTCCCAAAATAAGTGTCTT 58.676 43.478 0.00 0.00 0.00 3.01
3732 3871 5.484715 CTCCGTCCCAAAATAAGTGTCTTA 58.515 41.667 0.00 0.00 0.00 2.10
3733 3872 5.867330 TCCGTCCCAAAATAAGTGTCTTAA 58.133 37.500 0.00 0.00 0.00 1.85
3734 3873 5.935789 TCCGTCCCAAAATAAGTGTCTTAAG 59.064 40.000 0.00 0.00 0.00 1.85
3735 3874 5.704053 CCGTCCCAAAATAAGTGTCTTAAGT 59.296 40.000 1.63 0.00 0.00 2.24
3736 3875 6.206048 CCGTCCCAAAATAAGTGTCTTAAGTT 59.794 38.462 1.63 0.00 0.00 2.66
3737 3876 7.255346 CCGTCCCAAAATAAGTGTCTTAAGTTT 60.255 37.037 1.63 0.00 0.00 2.66
3738 3877 8.776470 CGTCCCAAAATAAGTGTCTTAAGTTTA 58.224 33.333 1.63 0.00 0.00 2.01
3740 3879 9.856162 TCCCAAAATAAGTGTCTTAAGTTTAGT 57.144 29.630 1.63 0.00 0.00 2.24
3750 3889 9.662947 AGTGTCTTAAGTTTAGTACAACTTTGT 57.337 29.630 14.44 0.00 43.17 2.83
3788 3927 8.934023 ATAAAGTTGAGACACTTATTTTGGGA 57.066 30.769 0.00 0.00 35.87 4.37
3789 3928 6.635030 AAGTTGAGACACTTATTTTGGGAC 57.365 37.500 0.00 0.00 35.10 4.46
3790 3929 4.755123 AGTTGAGACACTTATTTTGGGACG 59.245 41.667 0.00 0.00 0.00 4.79
3791 3930 3.670625 TGAGACACTTATTTTGGGACGG 58.329 45.455 0.00 0.00 0.00 4.79
3792 3931 3.325425 TGAGACACTTATTTTGGGACGGA 59.675 43.478 0.00 0.00 0.00 4.69
3793 3932 3.933332 GAGACACTTATTTTGGGACGGAG 59.067 47.826 0.00 0.00 0.00 4.63
3794 3933 3.007635 GACACTTATTTTGGGACGGAGG 58.992 50.000 0.00 0.00 0.00 4.30
3795 3934 2.290705 ACACTTATTTTGGGACGGAGGG 60.291 50.000 0.00 0.00 0.00 4.30
3796 3935 2.026636 CACTTATTTTGGGACGGAGGGA 60.027 50.000 0.00 0.00 0.00 4.20
3797 3936 2.238898 ACTTATTTTGGGACGGAGGGAG 59.761 50.000 0.00 0.00 0.00 4.30
3798 3937 1.961133 TATTTTGGGACGGAGGGAGT 58.039 50.000 0.00 0.00 0.00 3.85
3799 3938 1.961133 ATTTTGGGACGGAGGGAGTA 58.039 50.000 0.00 0.00 0.00 2.59
3800 3939 0.978907 TTTTGGGACGGAGGGAGTAC 59.021 55.000 0.00 0.00 0.00 2.73
3812 3951 4.948004 CGGAGGGAGTACATATATGCTGTA 59.052 45.833 12.79 0.00 0.00 2.74
3872 4011 2.891191 TCCAAGGGAATTACACCACC 57.109 50.000 0.00 0.00 0.00 4.61
3873 4012 1.356398 TCCAAGGGAATTACACCACCC 59.644 52.381 0.00 0.00 42.36 4.61
3874 4013 1.076350 CCAAGGGAATTACACCACCCA 59.924 52.381 0.00 0.00 44.25 4.51
3876 4015 3.053245 CCAAGGGAATTACACCACCCATA 60.053 47.826 0.00 0.00 44.25 2.74
3877 4016 4.207165 CAAGGGAATTACACCACCCATAG 58.793 47.826 0.00 0.00 44.25 2.23
3878 4017 3.470868 AGGGAATTACACCACCCATAGT 58.529 45.455 0.00 0.00 44.25 2.12
3879 4018 3.856206 AGGGAATTACACCACCCATAGTT 59.144 43.478 0.00 0.00 44.25 2.24
3880 4019 4.079958 AGGGAATTACACCACCCATAGTTC 60.080 45.833 0.00 0.00 44.25 3.01
3881 4020 4.204799 GGAATTACACCACCCATAGTTCC 58.795 47.826 0.00 0.00 30.46 3.62
3882 4021 3.945640 ATTACACCACCCATAGTTCCC 57.054 47.619 0.00 0.00 0.00 3.97
3883 4022 2.345782 TACACCACCCATAGTTCCCA 57.654 50.000 0.00 0.00 0.00 4.37
3884 4023 0.991920 ACACCACCCATAGTTCCCAG 59.008 55.000 0.00 0.00 0.00 4.45
3888 4027 0.107017 CACCCATAGTTCCCAGGCAG 60.107 60.000 0.00 0.00 0.00 4.85
3898 4037 0.618680 TCCCAGGCAGTAGCATCTGT 60.619 55.000 9.30 0.00 44.61 3.41
3926 4065 6.319911 GGCTGCCAAAGACTAAGATAAAGATT 59.680 38.462 15.17 0.00 0.00 2.40
3968 4107 8.274322 TGTCTTGATATATTTGTGGACCTTCAT 58.726 33.333 0.00 0.00 0.00 2.57
3969 4108 9.125026 GTCTTGATATATTTGTGGACCTTCATT 57.875 33.333 0.00 0.00 0.00 2.57
4089 4228 9.184523 TCCCAAATTCGTGAATATTTTATGAGT 57.815 29.630 0.00 0.00 0.00 3.41
4090 4229 9.801873 CCCAAATTCGTGAATATTTTATGAGTT 57.198 29.630 0.00 0.00 0.00 3.01
4094 4233 9.702726 AATTCGTGAATATTTTATGAGTTCGTG 57.297 29.630 0.00 0.00 0.00 4.35
4095 4234 8.468720 TTCGTGAATATTTTATGAGTTCGTGA 57.531 30.769 0.00 0.00 0.00 4.35
4096 4235 8.468720 TCGTGAATATTTTATGAGTTCGTGAA 57.531 30.769 0.00 0.00 0.00 3.18
4097 4236 8.377681 TCGTGAATATTTTATGAGTTCGTGAAC 58.622 33.333 4.58 4.58 41.45 3.18
4098 4237 8.166066 CGTGAATATTTTATGAGTTCGTGAACA 58.834 33.333 14.61 0.00 43.47 3.18
4099 4238 9.988350 GTGAATATTTTATGAGTTCGTGAACAT 57.012 29.630 14.61 3.69 43.47 2.71
4151 4290 2.249844 TCTTTTCCGCGGAGAACTTT 57.750 45.000 29.20 0.00 0.00 2.66
4175 4314 7.391148 TTTCTAAGCTTGTGGATACCAAATC 57.609 36.000 9.86 0.00 34.18 2.17
4181 4320 3.448093 TGTGGATACCAAATCTGCCAA 57.552 42.857 0.00 0.00 34.18 4.52
4182 4321 3.355378 TGTGGATACCAAATCTGCCAAG 58.645 45.455 0.00 0.00 34.18 3.61
4183 4322 2.689983 GTGGATACCAAATCTGCCAAGG 59.310 50.000 0.00 0.00 34.18 3.61
4192 4331 4.450053 CAAATCTGCCAAGGGTTTTTCAA 58.550 39.130 0.00 0.00 0.00 2.69
4200 4339 4.202000 GCCAAGGGTTTTTCAAATTTGTGG 60.202 41.667 17.47 14.41 0.00 4.17
4261 4400 9.993881 GTTGATTATTTTTGACATTCAAGAACG 57.006 29.630 0.00 0.00 37.70 3.95
4295 4434 7.969536 TTTGTGAACAATTCAAAAAGTTGGA 57.030 28.000 3.30 0.00 40.88 3.53
4297 4436 6.696411 TGTGAACAATTCAAAAAGTTGGAGT 58.304 32.000 0.00 0.00 42.15 3.85
4298 4437 7.831753 TGTGAACAATTCAAAAAGTTGGAGTA 58.168 30.769 0.00 0.00 42.15 2.59
4299 4438 7.973388 TGTGAACAATTCAAAAAGTTGGAGTAG 59.027 33.333 0.00 0.00 42.15 2.57
4300 4439 7.435192 GTGAACAATTCAAAAAGTTGGAGTAGG 59.565 37.037 0.00 0.00 42.15 3.18
4302 4441 5.362430 ACAATTCAAAAAGTTGGAGTAGGCA 59.638 36.000 0.00 0.00 35.29 4.75
4303 4442 5.712152 ATTCAAAAAGTTGGAGTAGGCAG 57.288 39.130 0.00 0.00 35.29 4.85
4304 4443 4.431416 TCAAAAAGTTGGAGTAGGCAGA 57.569 40.909 0.00 0.00 35.29 4.26
4305 4444 4.134563 TCAAAAAGTTGGAGTAGGCAGAC 58.865 43.478 0.00 0.00 35.29 3.51
4307 4446 4.439253 AAAAGTTGGAGTAGGCAGACTT 57.561 40.909 0.00 0.00 0.00 3.01
4308 4447 3.686916 AAGTTGGAGTAGGCAGACTTC 57.313 47.619 0.00 0.00 0.00 3.01
4309 4448 1.903183 AGTTGGAGTAGGCAGACTTCC 59.097 52.381 0.00 0.00 0.00 3.46
4310 4449 0.895530 TTGGAGTAGGCAGACTTCCG 59.104 55.000 0.00 0.00 0.00 4.30
4312 4451 0.173708 GGAGTAGGCAGACTTCCGTG 59.826 60.000 0.00 0.00 0.00 4.94
4313 4452 0.458716 GAGTAGGCAGACTTCCGTGC 60.459 60.000 0.00 0.00 39.08 5.34
4314 4453 1.185618 AGTAGGCAGACTTCCGTGCA 61.186 55.000 0.00 0.00 41.75 4.57
4315 4454 1.014564 GTAGGCAGACTTCCGTGCAC 61.015 60.000 6.82 6.82 41.75 4.57
4316 4455 2.167398 TAGGCAGACTTCCGTGCACC 62.167 60.000 12.15 0.00 41.75 5.01
4317 4456 3.050275 GCAGACTTCCGTGCACCC 61.050 66.667 12.15 0.00 39.62 4.61
4318 4457 2.743718 CAGACTTCCGTGCACCCT 59.256 61.111 12.15 0.00 0.00 4.34
4320 4459 1.071471 AGACTTCCGTGCACCCTTG 59.929 57.895 12.15 2.11 0.00 3.61
4322 4461 1.227853 ACTTCCGTGCACCCTTGTC 60.228 57.895 12.15 0.00 0.00 3.18
4323 4462 1.966451 CTTCCGTGCACCCTTGTCC 60.966 63.158 12.15 0.00 0.00 4.02
4325 4464 2.034066 CCGTGCACCCTTGTCCAT 59.966 61.111 12.15 0.00 0.00 3.41
4326 4465 2.334946 CCGTGCACCCTTGTCCATG 61.335 63.158 12.15 0.00 0.00 3.66
4328 4467 1.855213 CGTGCACCCTTGTCCATGTG 61.855 60.000 12.15 0.00 0.00 3.21
4329 4468 0.823356 GTGCACCCTTGTCCATGTGT 60.823 55.000 5.22 0.00 0.00 3.72
4330 4469 0.767998 TGCACCCTTGTCCATGTGTA 59.232 50.000 0.00 0.00 0.00 2.90
4332 4471 1.271379 GCACCCTTGTCCATGTGTAGT 60.271 52.381 0.00 0.00 0.00 2.73
4333 4472 2.814097 GCACCCTTGTCCATGTGTAGTT 60.814 50.000 0.00 0.00 0.00 2.24
4334 4473 3.486383 CACCCTTGTCCATGTGTAGTTT 58.514 45.455 0.00 0.00 0.00 2.66
4335 4474 3.888930 CACCCTTGTCCATGTGTAGTTTT 59.111 43.478 0.00 0.00 0.00 2.43
4380 4519 9.915629 TTTAGATCTCTCTTTACAGACTTTGTC 57.084 33.333 0.00 0.00 35.74 3.18
4382 4521 8.133024 AGATCTCTCTTTACAGACTTTGTCAT 57.867 34.615 0.00 0.00 41.29 3.06
4383 4522 8.034215 AGATCTCTCTTTACAGACTTTGTCATG 58.966 37.037 0.00 0.00 41.29 3.07
4384 4523 7.055667 TCTCTCTTTACAGACTTTGTCATGT 57.944 36.000 0.00 4.78 41.29 3.21
4386 4525 8.638873 TCTCTCTTTACAGACTTTGTCATGTTA 58.361 33.333 0.00 0.00 41.29 2.41
4387 4526 9.429359 CTCTCTTTACAGACTTTGTCATGTTAT 57.571 33.333 0.00 0.00 41.29 1.89
4395 4534 8.567948 ACAGACTTTGTCATGTTATAAGTTTGG 58.432 33.333 17.92 9.98 36.08 3.28
4396 4535 8.567948 CAGACTTTGTCATGTTATAAGTTTGGT 58.432 33.333 0.00 0.00 34.60 3.67
4397 4536 8.784043 AGACTTTGTCATGTTATAAGTTTGGTC 58.216 33.333 0.00 0.00 34.60 4.02
4398 4537 8.691661 ACTTTGTCATGTTATAAGTTTGGTCT 57.308 30.769 0.00 0.00 0.00 3.85
4399 4538 9.787435 ACTTTGTCATGTTATAAGTTTGGTCTA 57.213 29.630 0.00 0.00 0.00 2.59
4401 4540 8.556213 TTGTCATGTTATAAGTTTGGTCTACC 57.444 34.615 0.00 0.00 0.00 3.18
4402 4541 6.814644 TGTCATGTTATAAGTTTGGTCTACCG 59.185 38.462 0.00 0.00 39.43 4.02
4403 4542 7.037438 GTCATGTTATAAGTTTGGTCTACCGA 58.963 38.462 0.00 0.00 39.43 4.69
4404 4543 7.009907 GTCATGTTATAAGTTTGGTCTACCGAC 59.990 40.741 0.00 0.00 39.43 4.79
4519 4678 6.907206 ATCATAATTTGGCGTTTCATTTGG 57.093 33.333 0.00 0.00 0.00 3.28
4565 4724 0.475044 TTTTAGGTCTTGGGCGGTGT 59.525 50.000 0.00 0.00 0.00 4.16
4566 4725 0.475044 TTTAGGTCTTGGGCGGTGTT 59.525 50.000 0.00 0.00 0.00 3.32
4567 4726 1.350071 TTAGGTCTTGGGCGGTGTTA 58.650 50.000 0.00 0.00 0.00 2.41
4568 4727 1.575419 TAGGTCTTGGGCGGTGTTAT 58.425 50.000 0.00 0.00 0.00 1.89
4569 4728 0.696501 AGGTCTTGGGCGGTGTTATT 59.303 50.000 0.00 0.00 0.00 1.40
4570 4729 1.074889 AGGTCTTGGGCGGTGTTATTT 59.925 47.619 0.00 0.00 0.00 1.40
4571 4730 1.471287 GGTCTTGGGCGGTGTTATTTC 59.529 52.381 0.00 0.00 0.00 2.17
4572 4731 1.129811 GTCTTGGGCGGTGTTATTTCG 59.870 52.381 0.00 0.00 0.00 3.46
4573 4732 0.450184 CTTGGGCGGTGTTATTTCGG 59.550 55.000 0.00 0.00 0.00 4.30
4574 4733 1.587933 TTGGGCGGTGTTATTTCGGC 61.588 55.000 0.00 0.00 46.40 5.54
4575 4734 3.580916 GGCGGTGTTATTTCGGCA 58.419 55.556 0.00 0.00 46.38 5.69
4576 4735 1.877367 GGCGGTGTTATTTCGGCAA 59.123 52.632 0.00 0.00 46.38 4.52
4577 4736 0.455464 GGCGGTGTTATTTCGGCAAC 60.455 55.000 0.00 0.00 46.38 4.17
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 8.357290 TGTTGAGGAGTAAGCAGTAACTATAA 57.643 34.615 0.00 0.00 0.00 0.98
10 11 6.852420 TGTTGAGGAGTAAGCAGTAACTAT 57.148 37.500 0.00 0.00 0.00 2.12
19 20 5.582665 CCAGAACTTATGTTGAGGAGTAAGC 59.417 44.000 0.00 0.00 36.39 3.09
22 23 4.081087 GCCCAGAACTTATGTTGAGGAGTA 60.081 45.833 0.00 0.00 36.39 2.59
24 25 3.054802 AGCCCAGAACTTATGTTGAGGAG 60.055 47.826 0.00 0.00 36.39 3.69
25 26 2.912956 AGCCCAGAACTTATGTTGAGGA 59.087 45.455 0.00 0.00 36.39 3.71
33 34 5.574188 ACTGATTCAAAGCCCAGAACTTAT 58.426 37.500 0.00 0.00 0.00 1.73
36 37 3.515602 ACTGATTCAAAGCCCAGAACT 57.484 42.857 0.00 0.00 0.00 3.01
42 43 7.992754 ATGAATAGATACTGATTCAAAGCCC 57.007 36.000 1.76 0.00 43.39 5.19
64 65 6.819649 ACCATGAAACAAGGAATGCATTAATG 59.180 34.615 12.97 11.27 0.00 1.90
141 151 8.197439 GGGCAACAAACTAATAAGATAAGCATT 58.803 33.333 0.00 0.00 39.74 3.56
142 152 7.561356 AGGGCAACAAACTAATAAGATAAGCAT 59.439 33.333 0.00 0.00 39.74 3.79
143 153 6.889722 AGGGCAACAAACTAATAAGATAAGCA 59.110 34.615 0.00 0.00 39.74 3.91
144 154 7.334844 AGGGCAACAAACTAATAAGATAAGC 57.665 36.000 0.00 0.00 39.74 3.09
146 156 9.921637 CAAAAGGGCAACAAACTAATAAGATAA 57.078 29.630 0.00 0.00 39.74 1.75
148 158 6.873605 GCAAAAGGGCAACAAACTAATAAGAT 59.126 34.615 0.00 0.00 39.74 2.40
152 162 4.262678 GGGCAAAAGGGCAACAAACTAATA 60.263 41.667 0.00 0.00 45.66 0.98
154 164 2.158885 GGGCAAAAGGGCAACAAACTAA 60.159 45.455 0.00 0.00 45.66 2.24
155 165 1.414550 GGGCAAAAGGGCAACAAACTA 59.585 47.619 0.00 0.00 45.66 2.24
156 166 0.180171 GGGCAAAAGGGCAACAAACT 59.820 50.000 0.00 0.00 45.66 2.66
158 168 0.985490 AGGGGCAAAAGGGCAACAAA 60.985 50.000 0.00 0.00 45.66 2.83
177 195 0.324943 GGTAGTTGGCAGCCTGAGAA 59.675 55.000 14.15 0.00 0.00 2.87
222 241 1.072159 AGCAACAGTCTGGCAGGTC 59.928 57.895 15.73 8.51 0.00 3.85
228 247 2.174363 TCATGTCAGCAACAGTCTGG 57.826 50.000 4.53 0.00 42.37 3.86
240 259 2.618816 GGTCTTGCCCTTGATCATGTCA 60.619 50.000 0.00 0.00 34.25 3.58
264 283 0.032615 AGGTCTTGCGGATCTCCTCT 60.033 55.000 0.00 0.00 27.03 3.69
382 401 4.096558 TTCATTCAACGCGGCGGC 62.097 61.111 27.37 6.12 0.00 6.53
391 410 3.684103 AAGCGTTGTTCGTTCATTCAA 57.316 38.095 0.00 0.00 42.13 2.69
392 411 3.805422 ACTAAGCGTTGTTCGTTCATTCA 59.195 39.130 0.00 0.00 42.13 2.57
393 412 4.385244 ACTAAGCGTTGTTCGTTCATTC 57.615 40.909 0.00 0.00 42.13 2.67
394 413 6.476243 AATACTAAGCGTTGTTCGTTCATT 57.524 33.333 0.00 0.00 42.13 2.57
395 414 5.220154 CGAATACTAAGCGTTGTTCGTTCAT 60.220 40.000 0.00 0.00 42.13 2.57
400 419 3.605056 TGACGAATACTAAGCGTTGTTCG 59.395 43.478 6.73 6.73 42.81 3.95
429 448 5.064452 AGACATAAAGAAGAGCGCTGAAATG 59.936 40.000 18.48 10.98 0.00 2.32
507 526 3.608474 GCAAACATAACCACTGACCGAAC 60.608 47.826 0.00 0.00 0.00 3.95
532 551 5.008217 TGACCACGATAGGTTTTTCTTGTTG 59.992 40.000 0.00 0.00 43.38 3.33
566 585 7.441157 TGACGATTAAGATTCAGTTTGACAAGT 59.559 33.333 0.00 0.00 0.00 3.16
598 617 5.212532 TGGTGATAAACAAGCAAAGCATT 57.787 34.783 0.00 0.00 0.00 3.56
611 630 6.484288 ACAATCAGAACAGGATGGTGATAAA 58.516 36.000 0.00 0.00 33.00 1.40
618 637 3.087031 AGCAACAATCAGAACAGGATGG 58.913 45.455 0.00 0.00 43.62 3.51
620 639 3.504906 CACAGCAACAATCAGAACAGGAT 59.495 43.478 0.00 0.00 0.00 3.24
659 678 5.529060 AGAGAACAGGTTGTTAAGCTTCAAG 59.471 40.000 0.00 0.00 41.28 3.02
671 690 5.065731 GCATCCAGATTAAGAGAACAGGTTG 59.934 44.000 0.00 0.00 0.00 3.77
672 691 5.045286 AGCATCCAGATTAAGAGAACAGGTT 60.045 40.000 0.00 0.00 0.00 3.50
673 692 4.472833 AGCATCCAGATTAAGAGAACAGGT 59.527 41.667 0.00 0.00 0.00 4.00
674 693 4.815308 CAGCATCCAGATTAAGAGAACAGG 59.185 45.833 0.00 0.00 0.00 4.00
675 694 4.272991 GCAGCATCCAGATTAAGAGAACAG 59.727 45.833 0.00 0.00 0.00 3.16
676 695 4.080695 AGCAGCATCCAGATTAAGAGAACA 60.081 41.667 0.00 0.00 0.00 3.18
677 696 4.450053 AGCAGCATCCAGATTAAGAGAAC 58.550 43.478 0.00 0.00 0.00 3.01
678 697 4.767578 AGCAGCATCCAGATTAAGAGAA 57.232 40.909 0.00 0.00 0.00 2.87
679 698 4.408270 AGAAGCAGCATCCAGATTAAGAGA 59.592 41.667 0.00 0.00 0.00 3.10
680 699 4.706035 AGAAGCAGCATCCAGATTAAGAG 58.294 43.478 0.00 0.00 0.00 2.85
681 700 4.767578 AGAAGCAGCATCCAGATTAAGA 57.232 40.909 0.00 0.00 0.00 2.10
682 701 5.831702 AAAGAAGCAGCATCCAGATTAAG 57.168 39.130 0.00 0.00 0.00 1.85
683 702 7.112122 TCTTAAAGAAGCAGCATCCAGATTAA 58.888 34.615 0.00 0.00 32.21 1.40
684 703 6.653020 TCTTAAAGAAGCAGCATCCAGATTA 58.347 36.000 0.00 0.00 32.21 1.75
685 704 5.503927 TCTTAAAGAAGCAGCATCCAGATT 58.496 37.500 0.00 0.00 32.21 2.40
686 705 5.108187 TCTTAAAGAAGCAGCATCCAGAT 57.892 39.130 0.00 0.00 32.21 2.90
687 706 4.558226 TCTTAAAGAAGCAGCATCCAGA 57.442 40.909 0.00 0.00 32.21 3.86
688 707 5.450137 CCAATCTTAAAGAAGCAGCATCCAG 60.450 44.000 0.00 0.00 32.21 3.86
739 759 9.632807 GCACAACAGAAACATATATAACCAAAA 57.367 29.630 0.00 0.00 0.00 2.44
740 760 8.247562 GGCACAACAGAAACATATATAACCAAA 58.752 33.333 0.00 0.00 0.00 3.28
741 761 7.613801 AGGCACAACAGAAACATATATAACCAA 59.386 33.333 0.00 0.00 0.00 3.67
743 763 7.282224 TCAGGCACAACAGAAACATATATAACC 59.718 37.037 0.00 0.00 0.00 2.85
745 765 8.839343 CATCAGGCACAACAGAAACATATATAA 58.161 33.333 0.00 0.00 0.00 0.98
746 766 8.210265 TCATCAGGCACAACAGAAACATATATA 58.790 33.333 0.00 0.00 0.00 0.86
747 767 7.056006 TCATCAGGCACAACAGAAACATATAT 58.944 34.615 0.00 0.00 0.00 0.86
753 795 3.141398 TCTCATCAGGCACAACAGAAAC 58.859 45.455 0.00 0.00 0.00 2.78
770 812 4.202141 CCCAGAACAATTTGTTTGCTCTCA 60.202 41.667 15.54 0.00 41.28 3.27
771 813 4.301628 CCCAGAACAATTTGTTTGCTCTC 58.698 43.478 15.54 2.77 41.28 3.20
772 814 3.493176 GCCCAGAACAATTTGTTTGCTCT 60.493 43.478 15.54 6.01 41.28 4.09
773 815 2.802247 GCCCAGAACAATTTGTTTGCTC 59.198 45.455 15.54 3.80 41.28 4.26
774 816 2.485302 GGCCCAGAACAATTTGTTTGCT 60.485 45.455 15.54 6.90 41.28 3.91
775 817 1.872952 GGCCCAGAACAATTTGTTTGC 59.127 47.619 15.54 14.50 41.28 3.68
776 818 3.070015 AGAGGCCCAGAACAATTTGTTTG 59.930 43.478 15.54 14.09 41.28 2.93
777 819 3.070015 CAGAGGCCCAGAACAATTTGTTT 59.930 43.478 15.54 4.14 41.28 2.83
778 820 2.629617 CAGAGGCCCAGAACAATTTGTT 59.370 45.455 14.42 14.42 44.37 2.83
779 821 2.158475 TCAGAGGCCCAGAACAATTTGT 60.158 45.455 0.00 0.00 0.00 2.83
789 841 2.641305 CTTCAGAAATCAGAGGCCCAG 58.359 52.381 0.00 0.00 0.00 4.45
810 862 7.353414 TGAGACACTTCCTTATCATCTAAGG 57.647 40.000 4.92 4.92 44.11 2.69
811 863 9.474920 GAATGAGACACTTCCTTATCATCTAAG 57.525 37.037 0.00 0.00 0.00 2.18
892 945 2.753446 GGAAGGCAAGGCAGAGGC 60.753 66.667 0.00 0.00 40.13 4.70
893 946 0.540365 TTTGGAAGGCAAGGCAGAGG 60.540 55.000 0.00 0.00 0.00 3.69
894 947 1.331214 TTTTGGAAGGCAAGGCAGAG 58.669 50.000 0.00 0.00 0.00 3.35
895 948 2.014010 ATTTTGGAAGGCAAGGCAGA 57.986 45.000 0.00 0.00 0.00 4.26
896 949 2.417787 GCTATTTTGGAAGGCAAGGCAG 60.418 50.000 0.00 0.00 0.00 4.85
897 950 1.550072 GCTATTTTGGAAGGCAAGGCA 59.450 47.619 0.00 0.00 0.00 4.75
898 951 1.550072 TGCTATTTTGGAAGGCAAGGC 59.450 47.619 0.00 0.00 0.00 4.35
899 952 3.091545 TCTGCTATTTTGGAAGGCAAGG 58.908 45.455 0.00 0.00 32.43 3.61
900 953 4.789012 TTCTGCTATTTTGGAAGGCAAG 57.211 40.909 0.00 0.00 32.43 4.01
901 954 5.543507 TTTTCTGCTATTTTGGAAGGCAA 57.456 34.783 0.00 0.00 32.43 4.52
902 955 5.337491 GGATTTTCTGCTATTTTGGAAGGCA 60.337 40.000 0.00 0.00 0.00 4.75
961 1014 4.092091 GTGACAAGCTACATGTAGTGCTTC 59.908 45.833 28.95 20.90 40.29 3.86
1162 1225 1.336125 ACAGCAAAGAAACAGAGCAGC 59.664 47.619 0.00 0.00 0.00 5.25
1175 1261 1.105457 ACAGAGCAAGCAACAGCAAA 58.895 45.000 0.00 0.00 0.00 3.68
1197 1283 7.119262 TCAGCATCTGTTATCATCATAGCAATG 59.881 37.037 0.00 0.00 32.61 2.82
1232 1318 1.765161 TATCTGCGCGCTCAACATGC 61.765 55.000 33.29 0.00 0.00 4.06
1281 1367 0.170339 TGAGTGCCAGTATGTCGTCG 59.830 55.000 0.00 0.00 0.00 5.12
1389 1475 2.880443 ACAAGTACTCCCTCCGTTACA 58.120 47.619 0.00 0.00 0.00 2.41
1392 1478 4.648307 CCTAATACAAGTACTCCCTCCGTT 59.352 45.833 0.00 0.00 0.00 4.44
1393 1479 4.213513 CCTAATACAAGTACTCCCTCCGT 58.786 47.826 0.00 0.00 0.00 4.69
1394 1480 4.213513 ACCTAATACAAGTACTCCCTCCG 58.786 47.826 0.00 0.00 0.00 4.63
1395 1481 5.424573 ACAACCTAATACAAGTACTCCCTCC 59.575 44.000 0.00 0.00 0.00 4.30
1396 1482 6.541934 ACAACCTAATACAAGTACTCCCTC 57.458 41.667 0.00 0.00 0.00 4.30
1397 1483 6.271624 ACAACAACCTAATACAAGTACTCCCT 59.728 38.462 0.00 0.00 0.00 4.20
1398 1484 6.470278 ACAACAACCTAATACAAGTACTCCC 58.530 40.000 0.00 0.00 0.00 4.30
1399 1485 8.309656 AGTACAACAACCTAATACAAGTACTCC 58.690 37.037 0.00 0.00 35.97 3.85
1400 1486 9.136952 CAGTACAACAACCTAATACAAGTACTC 57.863 37.037 0.00 0.00 37.97 2.59
1401 1487 8.645110 ACAGTACAACAACCTAATACAAGTACT 58.355 33.333 0.00 0.00 39.92 2.73
1402 1488 8.822652 ACAGTACAACAACCTAATACAAGTAC 57.177 34.615 0.00 0.00 0.00 2.73
1403 1489 8.090214 GGACAGTACAACAACCTAATACAAGTA 58.910 37.037 0.00 0.00 0.00 2.24
1404 1490 6.932960 GGACAGTACAACAACCTAATACAAGT 59.067 38.462 0.00 0.00 0.00 3.16
1405 1491 7.159372 AGGACAGTACAACAACCTAATACAAG 58.841 38.462 0.00 0.00 0.00 3.16
1406 1492 7.069877 AGGACAGTACAACAACCTAATACAA 57.930 36.000 0.00 0.00 0.00 2.41
1407 1493 6.675413 AGGACAGTACAACAACCTAATACA 57.325 37.500 0.00 0.00 0.00 2.29
1408 1494 9.492973 TTTTAGGACAGTACAACAACCTAATAC 57.507 33.333 0.00 0.00 38.94 1.89
1409 1495 9.715121 CTTTTAGGACAGTACAACAACCTAATA 57.285 33.333 0.00 0.00 38.94 0.98
1410 1496 7.664318 CCTTTTAGGACAGTACAACAACCTAAT 59.336 37.037 0.00 0.00 37.67 1.73
1411 1497 6.993902 CCTTTTAGGACAGTACAACAACCTAA 59.006 38.462 0.00 0.00 37.67 2.69
1412 1498 6.100134 ACCTTTTAGGACAGTACAACAACCTA 59.900 38.462 0.00 0.00 37.67 3.08
1413 1499 5.104235 ACCTTTTAGGACAGTACAACAACCT 60.104 40.000 0.00 0.00 37.67 3.50
1414 1500 5.008316 CACCTTTTAGGACAGTACAACAACC 59.992 44.000 0.00 0.00 37.67 3.77
1415 1501 5.587443 ACACCTTTTAGGACAGTACAACAAC 59.413 40.000 0.00 0.00 37.67 3.32
1416 1502 5.747342 ACACCTTTTAGGACAGTACAACAA 58.253 37.500 0.00 0.00 37.67 2.83
1417 1503 5.362105 ACACCTTTTAGGACAGTACAACA 57.638 39.130 0.00 0.00 37.67 3.33
1418 1504 6.519382 ACTACACCTTTTAGGACAGTACAAC 58.481 40.000 0.00 0.00 37.67 3.32
1419 1505 6.736110 ACTACACCTTTTAGGACAGTACAA 57.264 37.500 0.00 0.00 37.67 2.41
1420 1506 6.736110 AACTACACCTTTTAGGACAGTACA 57.264 37.500 0.00 0.00 37.67 2.90
1421 1507 7.816513 CCTTAACTACACCTTTTAGGACAGTAC 59.183 40.741 0.00 0.00 37.67 2.73
1435 1521 8.347771 CAGTTTTTAGGAAACCTTAACTACACC 58.652 37.037 0.00 0.00 34.61 4.16
1500 1586 6.560253 TGAAACAAGACATAAAGAAGAGCC 57.440 37.500 0.00 0.00 0.00 4.70
1673 1759 0.735978 TGTTGGCAGCATCTACGTCG 60.736 55.000 0.00 0.00 0.00 5.12
1676 1762 0.108186 TCCTGTTGGCAGCATCTACG 60.108 55.000 3.98 0.00 41.26 3.51
1679 1765 1.471119 CATTCCTGTTGGCAGCATCT 58.529 50.000 3.98 0.00 41.26 2.90
1729 1815 6.389091 TGTCAGTCAAATAAATTCCATGTGC 58.611 36.000 0.00 0.00 0.00 4.57
1734 1820 6.446318 GCACTTGTCAGTCAAATAAATTCCA 58.554 36.000 0.00 0.00 35.48 3.53
1789 1875 5.070313 TCCATCATGGTAATCACGAGATTCA 59.930 40.000 11.50 5.50 39.67 2.57
1812 1898 0.255890 ACACCCTGCATACACCCATC 59.744 55.000 0.00 0.00 0.00 3.51
1838 1924 3.963687 TAGCTCCGCCGTCGTCTCA 62.964 63.158 0.00 0.00 0.00 3.27
1940 2026 1.003355 AATCACTCACAGGTGCGGG 60.003 57.895 0.00 0.00 37.16 6.13
1947 2033 2.479275 CACAGCAGTCAATCACTCACAG 59.521 50.000 0.00 0.00 30.26 3.66
1956 2042 7.488187 CTGTATAAATAGCACAGCAGTCAAT 57.512 36.000 0.00 0.00 33.86 2.57
1968 2054 8.386606 GCTGACATATCAAGCTGTATAAATAGC 58.613 37.037 0.00 0.00 39.98 2.97
1974 2060 5.221501 TGCTGCTGACATATCAAGCTGTATA 60.222 40.000 0.00 0.00 38.84 1.47
1977 2063 2.286872 GCTGCTGACATATCAAGCTGT 58.713 47.619 0.00 0.00 36.26 4.40
2051 2137 5.248020 TCCCAACAAACCTGCATTCATTATT 59.752 36.000 0.00 0.00 0.00 1.40
2159 2245 9.393512 GAGATGAGATTTATTTATGGAGGATGG 57.606 37.037 0.00 0.00 0.00 3.51
2171 2257 8.270744 ACAGGTTAGCTTGAGATGAGATTTATT 58.729 33.333 0.00 0.00 0.00 1.40
2188 2274 5.593010 CTCATACCTACTCAACAGGTTAGC 58.407 45.833 0.00 0.00 44.18 3.09
2204 2290 4.634443 AGTCGGTTTTACATTGCTCATACC 59.366 41.667 0.00 0.00 0.00 2.73
2336 2422 3.039011 AGAGCTGTAAATCGGTATGGGT 58.961 45.455 0.00 0.00 0.00 4.51
2352 2438 6.232581 AGCTGACACAAGAATAATAGAGCT 57.767 37.500 0.00 0.00 0.00 4.09
2552 2638 1.805869 TTGAAAATTGCAATGCCCCG 58.194 45.000 13.82 0.00 0.00 5.73
2587 2673 7.556275 ACAGAGTTCCTTGTCTCAAATGTAAAA 59.444 33.333 0.00 0.00 33.63 1.52
2601 2688 5.278169 CCATCAACAGAAACAGAGTTCCTTG 60.278 44.000 0.00 0.00 0.00 3.61
2661 2749 2.638855 TGGGTTTATCAGGTGGTACGTT 59.361 45.455 0.00 0.00 0.00 3.99
2682 2770 3.544607 ATCATCGCCAGCCGCTCT 61.545 61.111 0.00 0.00 36.73 4.09
2862 2950 2.432456 GCGATGTGAGGCACGACA 60.432 61.111 0.00 0.00 37.14 4.35
2920 3011 7.352079 ACTTCACTTCAGTTGAATCCAATTT 57.648 32.000 0.00 0.00 34.39 1.82
3002 3093 1.187715 CGCAGTCAACCAAACAAACG 58.812 50.000 0.00 0.00 0.00 3.60
3026 3117 2.661537 CTTCACGCGTCCACTGCA 60.662 61.111 9.86 0.00 0.00 4.41
3027 3118 3.414700 CCTTCACGCGTCCACTGC 61.415 66.667 9.86 0.00 0.00 4.40
3054 3145 1.009389 GCACGTTAAGAGCAGCGAGT 61.009 55.000 0.00 0.00 36.42 4.18
3066 3157 3.188159 AGGAAACTCACAAGCACGTTA 57.812 42.857 0.00 0.00 32.90 3.18
3111 3202 6.944234 AGCAATAAACATTAAGGGCTACTC 57.056 37.500 0.00 0.00 0.00 2.59
3124 3215 9.039165 ACCTACCTACTACTTTAGCAATAAACA 57.961 33.333 0.00 0.00 0.00 2.83
3125 3216 9.310716 CACCTACCTACTACTTTAGCAATAAAC 57.689 37.037 0.00 0.00 0.00 2.01
3153 3249 4.615949 CTCCATCAGGTTTCGATCAGTAG 58.384 47.826 0.00 0.00 35.89 2.57
3162 3258 2.508526 ACACTTGCTCCATCAGGTTTC 58.491 47.619 0.00 0.00 35.89 2.78
3163 3259 2.664402 ACACTTGCTCCATCAGGTTT 57.336 45.000 0.00 0.00 35.89 3.27
3300 3397 1.671054 GTTACCGAGCTGCTTGGCA 60.671 57.895 31.39 19.49 38.56 4.92
3309 3406 4.479619 CGGGTATATAACAGTTACCGAGC 58.520 47.826 12.00 3.14 36.95 5.03
3321 3418 4.018688 TCAGAGAGCTAGGCGGGTATATAA 60.019 45.833 0.00 0.00 0.00 0.98
3368 3481 8.338259 CACCAATCAATAGTCAATACAAGCTAC 58.662 37.037 0.00 0.00 0.00 3.58
3395 3508 3.536164 CAGGCCTGCAACCAACAA 58.464 55.556 22.33 0.00 0.00 2.83
3505 3624 7.288621 TGAGAGCATCCATACATATATACTGGG 59.711 40.741 7.27 0.00 33.66 4.45
3527 3646 5.654901 ACTACTACTCCATGAGGATGAGA 57.345 43.478 0.00 0.00 44.70 3.27
3683 3822 7.316640 GGAGTAATACCTAGCATACATCACAG 58.683 42.308 0.00 0.00 0.00 3.66
3699 3838 2.077687 TGGGACGGAGGGAGTAATAC 57.922 55.000 0.00 0.00 0.00 1.89
3704 3843 1.961133 TATTTTGGGACGGAGGGAGT 58.039 50.000 0.00 0.00 0.00 3.85
3705 3844 2.238898 ACTTATTTTGGGACGGAGGGAG 59.761 50.000 0.00 0.00 0.00 4.30
3706 3845 2.026636 CACTTATTTTGGGACGGAGGGA 60.027 50.000 0.00 0.00 0.00 4.20
3707 3846 2.290705 ACACTTATTTTGGGACGGAGGG 60.291 50.000 0.00 0.00 0.00 4.30
3708 3847 3.007635 GACACTTATTTTGGGACGGAGG 58.992 50.000 0.00 0.00 0.00 4.30
3709 3848 3.939066 AGACACTTATTTTGGGACGGAG 58.061 45.455 0.00 0.00 0.00 4.63
3710 3849 4.360951 AAGACACTTATTTTGGGACGGA 57.639 40.909 0.00 0.00 0.00 4.69
3711 3850 5.704053 ACTTAAGACACTTATTTTGGGACGG 59.296 40.000 10.09 0.00 0.00 4.79
3712 3851 6.796705 ACTTAAGACACTTATTTTGGGACG 57.203 37.500 10.09 0.00 0.00 4.79
3714 3853 9.856162 ACTAAACTTAAGACACTTATTTTGGGA 57.144 29.630 10.09 0.00 0.00 4.37
3763 3902 8.793592 GTCCCAAAATAAGTGTCTCAACTTTAT 58.206 33.333 0.00 0.00 40.77 1.40
3764 3903 7.041644 CGTCCCAAAATAAGTGTCTCAACTTTA 60.042 37.037 0.00 0.00 40.77 1.85
3765 3904 6.238648 CGTCCCAAAATAAGTGTCTCAACTTT 60.239 38.462 0.00 0.00 40.77 2.66
3766 3905 5.238650 CGTCCCAAAATAAGTGTCTCAACTT 59.761 40.000 0.00 0.00 42.89 2.66
3767 3906 4.755123 CGTCCCAAAATAAGTGTCTCAACT 59.245 41.667 0.00 0.00 0.00 3.16
3768 3907 4.083484 CCGTCCCAAAATAAGTGTCTCAAC 60.083 45.833 0.00 0.00 0.00 3.18
3769 3908 4.069304 CCGTCCCAAAATAAGTGTCTCAA 58.931 43.478 0.00 0.00 0.00 3.02
3770 3909 3.325425 TCCGTCCCAAAATAAGTGTCTCA 59.675 43.478 0.00 0.00 0.00 3.27
3771 3910 3.933332 CTCCGTCCCAAAATAAGTGTCTC 59.067 47.826 0.00 0.00 0.00 3.36
3772 3911 3.307480 CCTCCGTCCCAAAATAAGTGTCT 60.307 47.826 0.00 0.00 0.00 3.41
3773 3912 3.007635 CCTCCGTCCCAAAATAAGTGTC 58.992 50.000 0.00 0.00 0.00 3.67
3774 3913 2.290705 CCCTCCGTCCCAAAATAAGTGT 60.291 50.000 0.00 0.00 0.00 3.55
3775 3914 2.026636 TCCCTCCGTCCCAAAATAAGTG 60.027 50.000 0.00 0.00 0.00 3.16
3776 3915 2.238898 CTCCCTCCGTCCCAAAATAAGT 59.761 50.000 0.00 0.00 0.00 2.24
3777 3916 2.238898 ACTCCCTCCGTCCCAAAATAAG 59.761 50.000 0.00 0.00 0.00 1.73
3778 3917 2.271777 ACTCCCTCCGTCCCAAAATAA 58.728 47.619 0.00 0.00 0.00 1.40
3779 3918 1.961133 ACTCCCTCCGTCCCAAAATA 58.039 50.000 0.00 0.00 0.00 1.40
3780 3919 1.558294 GTACTCCCTCCGTCCCAAAAT 59.442 52.381 0.00 0.00 0.00 1.82
3781 3920 0.978907 GTACTCCCTCCGTCCCAAAA 59.021 55.000 0.00 0.00 0.00 2.44
3782 3921 0.178926 TGTACTCCCTCCGTCCCAAA 60.179 55.000 0.00 0.00 0.00 3.28
3783 3922 0.042131 ATGTACTCCCTCCGTCCCAA 59.958 55.000 0.00 0.00 0.00 4.12
3784 3923 0.928505 TATGTACTCCCTCCGTCCCA 59.071 55.000 0.00 0.00 0.00 4.37
3785 3924 2.305858 ATATGTACTCCCTCCGTCCC 57.694 55.000 0.00 0.00 0.00 4.46
3786 3925 3.130693 GCATATATGTACTCCCTCCGTCC 59.869 52.174 14.14 0.00 0.00 4.79
3787 3926 4.017808 AGCATATATGTACTCCCTCCGTC 58.982 47.826 14.14 0.00 0.00 4.79
3788 3927 3.764434 CAGCATATATGTACTCCCTCCGT 59.236 47.826 14.14 0.00 0.00 4.69
3789 3928 3.764434 ACAGCATATATGTACTCCCTCCG 59.236 47.826 14.14 0.00 0.00 4.63
3790 3929 6.852420 TTACAGCATATATGTACTCCCTCC 57.148 41.667 14.14 0.00 33.01 4.30
3791 3930 7.841956 ACATTACAGCATATATGTACTCCCTC 58.158 38.462 14.14 0.00 33.01 4.30
3792 3931 7.798710 ACATTACAGCATATATGTACTCCCT 57.201 36.000 14.14 0.00 33.01 4.20
3793 3932 9.534565 CATACATTACAGCATATATGTACTCCC 57.465 37.037 14.14 0.00 36.59 4.30
3835 3974 6.295236 CCCTTGGATTTCTTAATTGCTTCACA 60.295 38.462 0.00 0.00 0.00 3.58
3836 3975 6.071391 TCCCTTGGATTTCTTAATTGCTTCAC 60.071 38.462 0.00 0.00 0.00 3.18
3837 3976 6.015918 TCCCTTGGATTTCTTAATTGCTTCA 58.984 36.000 0.00 0.00 0.00 3.02
3838 3977 6.530019 TCCCTTGGATTTCTTAATTGCTTC 57.470 37.500 0.00 0.00 0.00 3.86
3839 3978 6.933514 TTCCCTTGGATTTCTTAATTGCTT 57.066 33.333 0.00 0.00 0.00 3.91
3840 3979 7.500629 AATTCCCTTGGATTTCTTAATTGCT 57.499 32.000 0.00 0.00 0.00 3.91
3841 3980 8.257306 TGTAATTCCCTTGGATTTCTTAATTGC 58.743 33.333 0.00 0.00 0.00 3.56
3842 3981 9.586435 GTGTAATTCCCTTGGATTTCTTAATTG 57.414 33.333 0.00 0.00 0.00 2.32
3843 3982 8.758829 GGTGTAATTCCCTTGGATTTCTTAATT 58.241 33.333 0.00 0.00 0.00 1.40
3844 3983 7.898636 TGGTGTAATTCCCTTGGATTTCTTAAT 59.101 33.333 0.00 0.00 0.00 1.40
3845 3984 7.177744 GTGGTGTAATTCCCTTGGATTTCTTAA 59.822 37.037 0.00 0.00 0.00 1.85
3846 3985 6.661805 GTGGTGTAATTCCCTTGGATTTCTTA 59.338 38.462 0.00 0.00 0.00 2.10
3847 3986 5.480422 GTGGTGTAATTCCCTTGGATTTCTT 59.520 40.000 0.00 0.00 0.00 2.52
3848 3987 5.016831 GTGGTGTAATTCCCTTGGATTTCT 58.983 41.667 0.00 0.00 0.00 2.52
3849 3988 4.159693 GGTGGTGTAATTCCCTTGGATTTC 59.840 45.833 0.00 0.00 0.00 2.17
3850 3989 4.093743 GGTGGTGTAATTCCCTTGGATTT 58.906 43.478 0.00 0.00 0.00 2.17
3851 3990 3.565670 GGGTGGTGTAATTCCCTTGGATT 60.566 47.826 0.00 0.00 37.18 3.01
3852 3991 2.024369 GGGTGGTGTAATTCCCTTGGAT 60.024 50.000 0.00 0.00 37.18 3.41
3872 4011 1.202698 GCTACTGCCTGGGAACTATGG 60.203 57.143 0.00 0.00 0.00 2.74
3873 4012 1.486310 TGCTACTGCCTGGGAACTATG 59.514 52.381 0.00 0.00 38.71 2.23
3874 4013 1.879575 TGCTACTGCCTGGGAACTAT 58.120 50.000 0.00 0.00 38.71 2.12
3876 4015 0.543749 GATGCTACTGCCTGGGAACT 59.456 55.000 0.00 0.00 38.71 3.01
3877 4016 0.543749 AGATGCTACTGCCTGGGAAC 59.456 55.000 0.00 0.00 38.71 3.62
3878 4017 0.543277 CAGATGCTACTGCCTGGGAA 59.457 55.000 0.00 0.00 38.71 3.97
3879 4018 0.618680 ACAGATGCTACTGCCTGGGA 60.619 55.000 9.83 0.00 41.06 4.37
3880 4019 0.179062 GACAGATGCTACTGCCTGGG 60.179 60.000 9.83 0.00 41.06 4.45
3881 4020 0.829333 AGACAGATGCTACTGCCTGG 59.171 55.000 9.83 0.00 41.06 4.45
3882 4021 1.472904 CCAGACAGATGCTACTGCCTG 60.473 57.143 15.52 15.52 44.12 4.85
3883 4022 0.829333 CCAGACAGATGCTACTGCCT 59.171 55.000 9.83 2.90 41.06 4.75
3884 4023 0.813210 GCCAGACAGATGCTACTGCC 60.813 60.000 9.83 0.80 41.06 4.85
3888 4027 0.813210 GGCAGCCAGACAGATGCTAC 60.813 60.000 6.55 0.00 38.71 3.58
3898 4037 1.977854 TCTTAGTCTTTGGCAGCCAGA 59.022 47.619 15.50 9.75 33.81 3.86
3926 4065 5.777802 TCAAGACAAACAAACAAGAAAGCA 58.222 33.333 0.00 0.00 0.00 3.91
4064 4203 9.801873 AACTCATAAAATATTCACGAATTTGGG 57.198 29.630 0.00 0.00 32.50 4.12
4084 4223 6.618287 TTCAGAAAATGTTCACGAACTCAT 57.382 33.333 11.01 0.00 41.67 2.90
4085 4224 6.618287 ATTCAGAAAATGTTCACGAACTCA 57.382 33.333 11.01 0.00 41.67 3.41
4086 4225 9.612620 ATTAATTCAGAAAATGTTCACGAACTC 57.387 29.630 11.01 0.93 41.67 3.01
4151 4290 7.121168 CAGATTTGGTATCCACAAGCTTAGAAA 59.879 37.037 0.00 0.00 30.78 2.52
4175 4314 4.639755 ACAAATTTGAAAAACCCTTGGCAG 59.360 37.500 24.64 0.00 0.00 4.85
4181 4320 9.283768 GAAATATCCACAAATTTGAAAAACCCT 57.716 29.630 24.64 3.53 0.00 4.34
4182 4321 8.511321 GGAAATATCCACAAATTTGAAAAACCC 58.489 33.333 24.64 9.91 45.79 4.11
4235 4374 9.993881 CGTTCTTGAATGTCAAAAATAATCAAC 57.006 29.630 0.00 0.00 35.73 3.18
4237 4376 9.743057 AACGTTCTTGAATGTCAAAAATAATCA 57.257 25.926 8.44 0.00 35.73 2.57
4269 4408 9.658799 TCCAACTTTTTGAATTGTTCACAAATA 57.341 25.926 0.00 0.00 38.30 1.40
4273 4412 6.696411 ACTCCAACTTTTTGAATTGTTCACA 58.304 32.000 0.00 0.00 39.87 3.58
4280 4419 5.833131 TCTGCCTACTCCAACTTTTTGAATT 59.167 36.000 0.00 0.00 34.24 2.17
4281 4420 5.241728 GTCTGCCTACTCCAACTTTTTGAAT 59.758 40.000 0.00 0.00 34.24 2.57
4290 4429 1.404315 CGGAAGTCTGCCTACTCCAAC 60.404 57.143 0.00 0.00 0.00 3.77
4293 4432 2.581074 ACGGAAGTCTGCCTACTCC 58.419 57.895 0.00 0.00 44.19 3.85
4305 4444 1.966451 GGACAAGGGTGCACGGAAG 60.966 63.158 11.45 3.58 35.12 3.46
4307 4446 3.164977 TGGACAAGGGTGCACGGA 61.165 61.111 11.45 0.00 40.73 4.69
4312 4451 1.271379 ACTACACATGGACAAGGGTGC 60.271 52.381 0.00 0.00 34.69 5.01
4313 4452 2.859165 ACTACACATGGACAAGGGTG 57.141 50.000 0.00 0.00 37.29 4.61
4314 4453 3.876309 AAACTACACATGGACAAGGGT 57.124 42.857 0.00 0.00 0.00 4.34
4349 4488 9.528489 AGTCTGTAAAGAGAGATCTAAAAGACT 57.472 33.333 0.00 3.69 35.78 3.24
4354 4493 9.915629 GACAAAGTCTGTAAAGAGAGATCTAAA 57.084 33.333 0.00 0.00 38.84 1.85
4355 4494 9.078990 TGACAAAGTCTGTAAAGAGAGATCTAA 57.921 33.333 0.00 0.00 38.84 2.10
4357 4496 7.531857 TGACAAAGTCTGTAAAGAGAGATCT 57.468 36.000 0.00 0.00 38.84 2.75
4358 4497 7.816995 ACATGACAAAGTCTGTAAAGAGAGATC 59.183 37.037 0.00 0.00 38.84 2.75
4359 4498 7.675062 ACATGACAAAGTCTGTAAAGAGAGAT 58.325 34.615 0.00 0.00 38.84 2.75
4360 4499 7.055667 ACATGACAAAGTCTGTAAAGAGAGA 57.944 36.000 0.00 0.00 38.84 3.10
4369 4508 8.567948 CCAAACTTATAACATGACAAAGTCTGT 58.432 33.333 0.00 0.00 42.61 3.41
4370 4509 8.567948 ACCAAACTTATAACATGACAAAGTCTG 58.432 33.333 0.00 0.98 33.15 3.51
4372 4511 8.784043 AGACCAAACTTATAACATGACAAAGTC 58.216 33.333 0.00 0.00 30.37 3.01
4376 4515 7.332430 CGGTAGACCAAACTTATAACATGACAA 59.668 37.037 0.00 0.00 35.14 3.18
4377 4516 6.814644 CGGTAGACCAAACTTATAACATGACA 59.185 38.462 0.00 0.00 35.14 3.58
4378 4517 7.009907 GTCGGTAGACCAAACTTATAACATGAC 59.990 40.741 0.00 0.00 41.41 3.06
4379 4518 7.037438 GTCGGTAGACCAAACTTATAACATGA 58.963 38.462 0.00 0.00 41.41 3.07
4380 4519 7.230466 GTCGGTAGACCAAACTTATAACATG 57.770 40.000 0.00 0.00 41.41 3.21
4395 4534 4.824289 TGGTTTTCAATAGGTCGGTAGAC 58.176 43.478 0.00 0.00 46.34 2.59
4396 4535 5.486735 TTGGTTTTCAATAGGTCGGTAGA 57.513 39.130 0.00 0.00 0.00 2.59
4397 4536 6.753107 ATTTGGTTTTCAATAGGTCGGTAG 57.247 37.500 0.00 0.00 34.98 3.18
4398 4537 8.632906 TTAATTTGGTTTTCAATAGGTCGGTA 57.367 30.769 0.00 0.00 34.98 4.02
4399 4538 7.527568 TTAATTTGGTTTTCAATAGGTCGGT 57.472 32.000 0.00 0.00 34.98 4.69
4494 4649 7.605691 TCCAAATGAAACGCCAAATTATGATTT 59.394 29.630 0.00 0.00 35.90 2.17
4495 4650 7.102346 TCCAAATGAAACGCCAAATTATGATT 58.898 30.769 0.00 0.00 0.00 2.57
4496 4651 6.638610 TCCAAATGAAACGCCAAATTATGAT 58.361 32.000 0.00 0.00 0.00 2.45
4533 4692 5.333566 AGACCTAAAATGGGGAAGACAAA 57.666 39.130 0.00 0.00 0.00 2.83
4546 4705 0.475044 ACACCGCCCAAGACCTAAAA 59.525 50.000 0.00 0.00 0.00 1.52
4565 4724 1.730064 GTGCTCTCGTTGCCGAAATAA 59.270 47.619 0.00 0.00 43.69 1.40
4566 4725 1.355971 GTGCTCTCGTTGCCGAAATA 58.644 50.000 0.00 0.00 43.69 1.40
4567 4726 2.162716 GTGCTCTCGTTGCCGAAAT 58.837 52.632 0.00 0.00 43.69 2.17
4568 4727 3.637714 GTGCTCTCGTTGCCGAAA 58.362 55.556 0.00 0.00 43.69 3.46


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.