Multiple sequence alignment - TraesCS6D01G001600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G001600 chr6D 100.000 3257 0 0 1 3257 802603 805859 0.000000e+00 6015.0
1 TraesCS6D01G001600 chr6B 86.837 1489 80 41 1844 3257 3383784 3385231 0.000000e+00 1557.0
2 TraesCS6D01G001600 chr6B 85.392 753 53 32 670 1386 3382627 3383358 0.000000e+00 728.0
3 TraesCS6D01G001600 chr6B 87.213 610 66 10 21 620 3381889 3382496 0.000000e+00 684.0
4 TraesCS6D01G001600 chr6B 91.304 115 9 1 134 248 3379202 3379315 4.350000e-34 156.0
5 TraesCS6D01G001600 chr6A 86.564 1496 66 45 1844 3257 287190 288632 0.000000e+00 1524.0
6 TraesCS6D01G001600 chr6A 85.027 748 41 32 670 1386 286008 286715 0.000000e+00 695.0
7 TraesCS6D01G001600 chr6A 85.738 610 70 14 21 620 285275 285877 2.130000e-176 628.0
8 TraesCS6D01G001600 chr6A 91.304 115 9 1 134 248 282576 282689 4.350000e-34 156.0
9 TraesCS6D01G001600 chr4A 92.408 382 16 8 998 1379 732778941 732779309 1.720000e-147 532.0
10 TraesCS6D01G001600 chr4A 86.120 317 24 15 2058 2363 732780501 732780808 1.130000e-84 324.0
11 TraesCS6D01G001600 chr4A 85.542 332 21 9 1022 1353 639977570 639977874 4.050000e-84 322.0
12 TraesCS6D01G001600 chr7A 92.663 368 17 8 997 1363 8381252 8381610 3.720000e-144 521.0
13 TraesCS6D01G001600 chr7A 79.266 545 68 34 1844 2352 8382612 8383147 4.030000e-89 339.0
14 TraesCS6D01G001600 chr7D 91.033 368 14 10 997 1363 7453877 7454226 2.270000e-131 479.0
15 TraesCS6D01G001600 chr7D 95.477 199 9 0 2062 2260 7455484 7455682 5.240000e-83 318.0
16 TraesCS6D01G001600 chr7D 92.683 205 14 1 1636 1840 109921254 109921457 8.840000e-76 294.0
17 TraesCS6D01G001600 chr7D 77.154 499 69 21 2062 2557 632354701 632355157 6.980000e-62 248.0
18 TraesCS6D01G001600 chr7D 77.154 499 68 21 2062 2557 632363092 632363547 6.980000e-62 248.0
19 TraesCS6D01G001600 chr7D 97.345 113 1 2 1844 1954 109921525 109921637 1.190000e-44 191.0
20 TraesCS6D01G001600 chr7D 95.536 112 4 1 1844 1954 60105970 60105859 9.290000e-41 178.0
21 TraesCS6D01G001600 chr7D 100.000 36 0 0 1805 1840 60106074 60106039 2.100000e-07 67.6
22 TraesCS6D01G001600 chr7D 97.143 35 1 0 1616 1650 109921213 109921247 3.510000e-05 60.2
23 TraesCS6D01G001600 chr5D 87.464 343 31 9 1022 1355 515094285 515093946 5.100000e-103 385.0
24 TraesCS6D01G001600 chr2D 86.880 343 33 5 1022 1355 534129418 534129757 1.100000e-99 374.0
25 TraesCS6D01G001600 chr2D 85.928 334 20 17 1022 1355 633259090 633258784 6.740000e-87 331.0
26 TraesCS6D01G001600 chr2D 85.928 334 20 15 1022 1355 633286445 633286139 6.740000e-87 331.0
27 TraesCS6D01G001600 chr2D 84.940 332 23 15 1022 1353 633237255 633236951 8.780000e-81 311.0
28 TraesCS6D01G001600 chr2D 81.435 237 30 10 2399 2632 606116319 606116544 7.180000e-42 182.0
29 TraesCS6D01G001600 chr2D 96.341 82 3 0 1272 1353 633298040 633298121 5.670000e-28 135.0
30 TraesCS6D01G001600 chr5B 86.826 334 38 5 1022 1355 647879421 647879094 5.130000e-98 368.0
31 TraesCS6D01G001600 chr2B 91.477 176 15 0 2083 2258 634644376 634644551 3.250000e-60 243.0
32 TraesCS6D01G001600 chr2A 88.710 186 21 0 2083 2268 744687286 744687101 9.090000e-56 228.0
33 TraesCS6D01G001600 chr2A 89.873 79 5 3 2397 2474 748817083 748817159 7.440000e-17 99.0
34 TraesCS6D01G001600 chr2A 91.489 47 4 0 3142 3188 770683237 770683191 7.540000e-07 65.8
35 TraesCS6D01G001600 chr3D 82.667 75 12 1 1844 1917 133263376 133263302 7.540000e-07 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G001600 chr6D 802603 805859 3256 False 6015.00 6015 100.00000 1 3257 1 chr6D.!!$F1 3256
1 TraesCS6D01G001600 chr6B 3379202 3385231 6029 False 781.25 1557 87.68650 21 3257 4 chr6B.!!$F1 3236
2 TraesCS6D01G001600 chr6A 282576 288632 6056 False 750.75 1524 87.15825 21 3257 4 chr6A.!!$F1 3236
3 TraesCS6D01G001600 chr4A 732778941 732780808 1867 False 428.00 532 89.26400 998 2363 2 chr4A.!!$F2 1365
4 TraesCS6D01G001600 chr7A 8381252 8383147 1895 False 430.00 521 85.96450 997 2352 2 chr7A.!!$F1 1355
5 TraesCS6D01G001600 chr7D 7453877 7455682 1805 False 398.50 479 93.25500 997 2260 2 chr7D.!!$F3 1263

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
824 3632 0.038526 GTCTCCGTTTCCTTGCGAGA 60.039 55.0 1.22 0.0 0.00 4.04 F
969 3801 0.100861 CCTCGCTAGGGTTTCGTCTC 59.899 60.0 6.70 0.0 39.48 3.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2163 5838 0.032615 AGGTCTTGCGGATCTCCTCT 60.033 55.0 0.0 0.0 27.03 3.69 R
2792 6515 0.540365 TTTGGAAGGCAAGGCAGAGG 60.540 55.0 0.0 0.0 0.00 3.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 0.390735 CCCCCAACCGAGTTTCGTAG 60.391 60.000 0.00 0.00 38.40 3.51
23 24 0.390735 CCCAACCGAGTTTCGTAGGG 60.391 60.000 5.97 5.97 38.40 3.53
24 25 0.319405 CCAACCGAGTTTCGTAGGGT 59.681 55.000 0.00 0.00 38.40 4.34
35 2727 5.703310 AGTTTCGTAGGGTCTATCTACCAT 58.297 41.667 0.00 0.00 41.67 3.55
39 2731 5.888901 TCGTAGGGTCTATCTACCATTCAT 58.111 41.667 0.00 0.00 41.67 2.57
126 2818 2.752354 TGGAGCCACAAAAATGTATCGG 59.248 45.455 0.00 0.00 0.00 4.18
133 2825 1.821753 CAAAAATGTATCGGTGGGGCA 59.178 47.619 0.00 0.00 0.00 5.36
167 2859 6.860790 AAACAAGGTAAGAAAGGGACAAAA 57.139 33.333 0.00 0.00 0.00 2.44
172 2864 5.464069 AGGTAAGAAAGGGACAAAACCATT 58.536 37.500 0.00 0.00 35.39 3.16
180 2872 6.940831 AAGGGACAAAACCATTGAAAAATG 57.059 33.333 0.00 0.00 32.59 2.32
196 2888 7.528481 TGAAAAATGCATGCTAATCATTGTC 57.472 32.000 20.33 10.89 31.79 3.18
215 2907 5.825593 TGTCAGTCTAAATGAAAGGACCT 57.174 39.130 0.00 0.00 0.00 3.85
226 2918 5.972107 ATGAAAGGACCTCATCAAACTTG 57.028 39.130 12.53 0.00 0.00 3.16
229 2921 5.763204 TGAAAGGACCTCATCAAACTTGTAC 59.237 40.000 7.34 0.00 0.00 2.90
231 2923 3.000727 GGACCTCATCAAACTTGTACCG 58.999 50.000 0.00 0.00 0.00 4.02
232 2924 3.306502 GGACCTCATCAAACTTGTACCGA 60.307 47.826 0.00 0.00 0.00 4.69
290 2982 7.308649 GGCTTTTGGTTTTGTTTCCTTGTAAAA 60.309 33.333 0.00 0.00 0.00 1.52
346 3038 1.691195 CCAAACCCAACCCAACCCAC 61.691 60.000 0.00 0.00 0.00 4.61
347 3039 0.689412 CAAACCCAACCCAACCCACT 60.689 55.000 0.00 0.00 0.00 4.00
348 3040 0.689412 AAACCCAACCCAACCCACTG 60.689 55.000 0.00 0.00 0.00 3.66
350 3042 2.917227 CCAACCCAACCCACTGCC 60.917 66.667 0.00 0.00 0.00 4.85
355 3047 2.990967 CCAACCCACTGCCGCAAT 60.991 61.111 0.00 0.00 0.00 3.56
362 3054 2.092646 ACCCACTGCCGCAATAATAGAA 60.093 45.455 0.00 0.00 0.00 2.10
393 3085 3.011760 CTTCTTTCGCCGCCGTGTC 62.012 63.158 0.00 0.00 35.54 3.67
423 3115 2.152830 CTCTAGGGTTACCTCGATCCG 58.847 57.143 0.00 0.00 46.95 4.18
433 3125 5.917447 GGTTACCTCGATCCGTAACTAAATC 59.083 44.000 20.57 8.09 42.50 2.17
457 3149 1.069358 CAGATCTCGCTAGGGTTTCCC 59.931 57.143 6.70 0.00 45.90 3.97
486 3178 2.695970 CCGAGGAGGAGGAGGAGGT 61.696 68.421 0.00 0.00 45.00 3.85
488 3180 1.927569 CGAGGAGGAGGAGGAGGTGA 61.928 65.000 0.00 0.00 0.00 4.02
489 3181 0.560688 GAGGAGGAGGAGGAGGTGAT 59.439 60.000 0.00 0.00 0.00 3.06
509 3224 0.321122 GGTGGGACTGCTCAGACAAG 60.321 60.000 3.60 0.00 0.00 3.16
511 3226 1.618837 GTGGGACTGCTCAGACAAGTA 59.381 52.381 3.60 0.00 0.00 2.24
512 3227 1.895798 TGGGACTGCTCAGACAAGTAG 59.104 52.381 3.60 0.00 35.37 2.57
517 3232 2.560542 ACTGCTCAGACAAGTAGGACAG 59.439 50.000 3.60 0.00 33.73 3.51
525 3240 5.417266 TCAGACAAGTAGGACAGAAGAGATG 59.583 44.000 0.00 0.00 0.00 2.90
526 3241 5.184864 CAGACAAGTAGGACAGAAGAGATGT 59.815 44.000 0.00 0.00 0.00 3.06
527 3242 5.184864 AGACAAGTAGGACAGAAGAGATGTG 59.815 44.000 0.00 0.00 0.00 3.21
528 3243 4.835615 ACAAGTAGGACAGAAGAGATGTGT 59.164 41.667 0.00 0.00 38.44 3.72
535 3250 5.906113 GACAGAAGAGATGTGTCTAGGAA 57.094 43.478 0.00 0.00 46.15 3.36
536 3251 5.646606 GACAGAAGAGATGTGTCTAGGAAC 58.353 45.833 0.00 0.00 46.15 3.62
543 3258 5.816777 AGAGATGTGTCTAGGAACTACGTAC 59.183 44.000 0.00 0.00 41.75 3.67
577 3292 5.184711 ACTTGTAGAGGACGAACTAGTAGG 58.815 45.833 0.00 0.00 29.45 3.18
584 3299 5.072600 AGAGGACGAACTAGTAGGAGATGAT 59.927 44.000 0.00 0.00 0.00 2.45
604 3319 0.179936 GAAGGGTGCAGAGGAGATGG 59.820 60.000 0.00 0.00 0.00 3.51
636 3377 1.672356 GGCCGTGCACAACAGAGAT 60.672 57.895 18.64 0.00 0.00 2.75
639 3380 1.730501 CCGTGCACAACAGAGATGAT 58.269 50.000 18.64 0.00 0.00 2.45
643 3420 1.003928 TGCACAACAGAGATGATGCCT 59.996 47.619 0.00 0.00 32.02 4.75
646 3423 1.134580 ACAACAGAGATGATGCCTCCG 60.135 52.381 0.00 0.00 0.00 4.63
647 3424 1.134580 CAACAGAGATGATGCCTCCGT 60.135 52.381 0.00 0.00 0.00 4.69
650 3427 1.134580 CAGAGATGATGCCTCCGTGTT 60.135 52.381 0.00 0.00 0.00 3.32
691 3488 1.226888 GGGTCCGCACGACAGATAC 60.227 63.158 3.56 0.00 43.95 2.24
711 3508 2.298729 ACAAAGTGGTGTTGTGCAAAGT 59.701 40.909 0.00 0.00 37.80 2.66
714 3511 1.472480 AGTGGTGTTGTGCAAAGTCAC 59.528 47.619 0.00 0.00 37.48 3.67
719 3516 0.923911 GTTGTGCAAAGTCACGTCGC 60.924 55.000 0.00 0.00 39.73 5.19
743 3544 2.098443 TGCGTGCGTTAGATACAGATCA 59.902 45.455 0.00 0.00 34.17 2.92
766 3567 3.985925 GACGGTCATCGAACTTTTGTAGT 59.014 43.478 2.62 0.00 42.43 2.73
767 3568 5.048504 AGACGGTCATCGAACTTTTGTAGTA 60.049 40.000 11.27 0.00 42.43 1.82
772 3573 6.253083 GGTCATCGAACTTTTGTAGTAGTAGC 59.747 42.308 0.00 0.00 35.54 3.58
773 3574 6.805271 GTCATCGAACTTTTGTAGTAGTAGCA 59.195 38.462 0.00 0.00 35.54 3.49
774 3575 7.327761 GTCATCGAACTTTTGTAGTAGTAGCAA 59.672 37.037 0.00 0.00 35.54 3.91
775 3576 8.033038 TCATCGAACTTTTGTAGTAGTAGCAAT 58.967 33.333 0.00 0.00 35.54 3.56
778 3579 7.868922 TCGAACTTTTGTAGTAGTAGCAATCAA 59.131 33.333 0.00 0.00 35.54 2.57
793 3594 8.992073 AGTAGCAATCAAATTTGGTCAAAATTC 58.008 29.630 17.90 4.56 45.73 2.17
799 3600 7.617041 TCAAATTTGGTCAAAATTCGGTTTT 57.383 28.000 17.90 0.00 45.73 2.43
820 3628 1.223187 TTTCGTCTCCGTTTCCTTGC 58.777 50.000 0.00 0.00 35.01 4.01
821 3629 0.942410 TTCGTCTCCGTTTCCTTGCG 60.942 55.000 0.00 0.00 35.01 4.85
822 3630 1.372499 CGTCTCCGTTTCCTTGCGA 60.372 57.895 0.00 0.00 0.00 5.10
823 3631 1.344942 CGTCTCCGTTTCCTTGCGAG 61.345 60.000 0.00 0.00 0.00 5.03
824 3632 0.038526 GTCTCCGTTTCCTTGCGAGA 60.039 55.000 1.22 0.00 0.00 4.04
825 3633 0.895530 TCTCCGTTTCCTTGCGAGAT 59.104 50.000 1.22 0.00 0.00 2.75
826 3634 2.097036 TCTCCGTTTCCTTGCGAGATA 58.903 47.619 1.22 0.00 0.00 1.98
827 3635 2.159282 TCTCCGTTTCCTTGCGAGATAC 60.159 50.000 1.22 0.00 0.00 2.24
831 3639 2.027688 CGTTTCCTTGCGAGATACGAAC 59.972 50.000 1.22 0.00 45.77 3.95
835 3643 0.800683 CTTGCGAGATACGAACGGCA 60.801 55.000 0.00 0.00 45.77 5.69
857 3665 2.363711 TAGCCATCCATCCACGCGTC 62.364 60.000 9.86 0.00 0.00 5.19
858 3666 2.501128 CCATCCATCCACGCGTCT 59.499 61.111 9.86 0.00 0.00 4.18
860 3680 1.431488 CCATCCATCCACGCGTCTTG 61.431 60.000 9.86 7.24 0.00 3.02
877 3697 7.066043 ACGCGTCTTGAATAAATAAATACCCAA 59.934 33.333 5.58 0.00 0.00 4.12
880 3704 8.132995 CGTCTTGAATAAATAAATACCCAACCC 58.867 37.037 0.00 0.00 0.00 4.11
881 3705 8.973182 GTCTTGAATAAATAAATACCCAACCCA 58.027 33.333 0.00 0.00 0.00 4.51
882 3706 8.973182 TCTTGAATAAATAAATACCCAACCCAC 58.027 33.333 0.00 0.00 0.00 4.61
886 3710 0.624785 TAAATACCCAACCCACCCCG 59.375 55.000 0.00 0.00 0.00 5.73
887 3711 2.791613 AAATACCCAACCCACCCCGC 62.792 60.000 0.00 0.00 0.00 6.13
932 3764 4.834911 TTTTTCCCCTTCCTCCGC 57.165 55.556 0.00 0.00 0.00 5.54
948 3780 4.493747 GCCGCCGCGACTAGAGTT 62.494 66.667 15.93 0.00 0.00 3.01
949 3781 2.181021 CCGCCGCGACTAGAGTTT 59.819 61.111 15.93 0.00 0.00 2.66
952 3784 1.511768 GCCGCGACTAGAGTTTCCT 59.488 57.895 8.23 0.00 0.00 3.36
954 3786 0.248134 CCGCGACTAGAGTTTCCTCG 60.248 60.000 8.23 0.00 42.86 4.63
965 3797 1.067071 AGTTTCCTCGCTAGGGTTTCG 60.067 52.381 4.14 0.00 43.84 3.46
969 3801 0.100861 CCTCGCTAGGGTTTCGTCTC 59.899 60.000 6.70 0.00 39.48 3.36
977 3811 2.126189 GTTTCGTCTCCCGGTCCG 60.126 66.667 3.60 3.60 37.11 4.79
1041 3882 2.480244 CGGCGAGAAGAAGATGATCACA 60.480 50.000 0.00 0.00 0.00 3.58
1379 4261 7.175641 GGTATGAATCAATCAAATCCCTCGATT 59.824 37.037 0.00 0.00 42.54 3.34
1381 4263 5.237127 TGAATCAATCAAATCCCTCGATTCG 59.763 40.000 0.00 0.00 39.91 3.34
1382 4264 4.400529 TCAATCAAATCCCTCGATTCGA 57.599 40.909 8.70 8.70 37.76 3.71
1394 4287 4.457603 CCCTCGATTCGATTCTAGATCTGT 59.542 45.833 9.54 0.00 34.61 3.41
1395 4288 5.644206 CCCTCGATTCGATTCTAGATCTGTA 59.356 44.000 9.54 0.00 34.61 2.74
1398 4291 7.123160 TCGATTCGATTCTAGATCTGTACTG 57.877 40.000 5.18 0.00 0.00 2.74
1400 4293 7.226918 TCGATTCGATTCTAGATCTGTACTGTT 59.773 37.037 5.18 0.00 0.00 3.16
1402 4295 9.176181 GATTCGATTCTAGATCTGTACTGTTTC 57.824 37.037 5.18 0.00 0.00 2.78
1405 4298 6.915300 CGATTCTAGATCTGTACTGTTTCTGG 59.085 42.308 5.18 12.04 0.00 3.86
1406 4299 5.584253 TCTAGATCTGTACTGTTTCTGGC 57.416 43.478 5.18 0.00 0.00 4.85
1407 4300 3.618690 AGATCTGTACTGTTTCTGGCC 57.381 47.619 0.00 0.00 0.00 5.36
1434 4365 1.135721 GATCCAGATTGGTTTGCTGCC 59.864 52.381 0.00 0.00 39.03 4.85
1455 4386 2.691927 GTTTAGGTTCGATTGGACGGT 58.308 47.619 0.00 0.00 0.00 4.83
1457 4393 1.548081 TAGGTTCGATTGGACGGTCA 58.452 50.000 10.76 0.00 0.00 4.02
1468 4424 3.328382 TGGACGGTCAAGATTCGATTT 57.672 42.857 10.76 0.00 0.00 2.17
1473 4429 5.221891 ACGGTCAAGATTCGATTTGATTG 57.778 39.130 9.73 8.34 35.91 2.67
1476 4432 4.354587 GTCAAGATTCGATTTGATTGGGC 58.645 43.478 9.73 0.00 35.91 5.36
1510 4467 7.096551 ACATACATGATTGGCTTGTTTTTACC 58.903 34.615 0.00 0.00 36.42 2.85
1526 4503 6.609616 TGTTTTTACCCAAAGGACAGAGATTT 59.390 34.615 0.00 0.00 36.73 2.17
1527 4504 6.648879 TTTTACCCAAAGGACAGAGATTTG 57.351 37.500 0.00 0.00 36.73 2.32
1596 4647 4.285775 TCCATGTTCTTGTGGTCTGATGTA 59.714 41.667 0.00 0.00 36.84 2.29
1597 4648 5.045651 TCCATGTTCTTGTGGTCTGATGTAT 60.046 40.000 0.00 0.00 36.84 2.29
1598 4649 5.065602 CCATGTTCTTGTGGTCTGATGTATG 59.934 44.000 0.00 0.00 0.00 2.39
1600 4651 6.353404 TGTTCTTGTGGTCTGATGTATGTA 57.647 37.500 0.00 0.00 0.00 2.29
1601 4652 6.946340 TGTTCTTGTGGTCTGATGTATGTAT 58.054 36.000 0.00 0.00 0.00 2.29
1602 4653 8.073467 TGTTCTTGTGGTCTGATGTATGTATA 57.927 34.615 0.00 0.00 0.00 1.47
1631 4761 5.670361 TGAATGACCTTACCTTATTAGGCCT 59.330 40.000 11.78 11.78 46.22 5.19
1633 4763 3.714798 TGACCTTACCTTATTAGGCCTGG 59.285 47.826 17.99 10.44 46.22 4.45
1639 4769 6.490381 CCTTACCTTATTAGGCCTGGAAATTC 59.510 42.308 17.99 0.00 46.22 2.17
1642 4772 7.408013 ACCTTATTAGGCCTGGAAATTCTAT 57.592 36.000 17.99 0.00 46.22 1.98
1656 4786 8.033178 TGGAAATTCTATCTATGTGTGGATGA 57.967 34.615 0.00 0.00 0.00 2.92
1657 4787 8.493607 TGGAAATTCTATCTATGTGTGGATGAA 58.506 33.333 0.00 0.00 0.00 2.57
1675 4922 8.844244 GTGGATGAATTGTTTCTATCTAGCATT 58.156 33.333 0.00 0.00 32.78 3.56
1676 4923 8.843262 TGGATGAATTGTTTCTATCTAGCATTG 58.157 33.333 0.00 0.00 32.78 2.82
1677 4924 8.844244 GGATGAATTGTTTCTATCTAGCATTGT 58.156 33.333 0.00 0.00 32.78 2.71
1696 4943 8.906867 AGCATTGTATGTAGCTAAATCACATTT 58.093 29.630 0.00 0.00 35.19 2.32
1726 4973 8.677300 TGCTAAGATTTGTTTTTCTATGCTAGG 58.323 33.333 0.00 0.00 0.00 3.02
1727 4974 8.893727 GCTAAGATTTGTTTTTCTATGCTAGGA 58.106 33.333 0.00 0.00 0.00 2.94
1731 4978 9.247861 AGATTTGTTTTTCTATGCTAGGATTGT 57.752 29.630 0.65 0.00 0.00 2.71
1732 4979 9.508567 GATTTGTTTTTCTATGCTAGGATTGTC 57.491 33.333 0.65 0.00 0.00 3.18
1733 4980 8.635765 TTTGTTTTTCTATGCTAGGATTGTCT 57.364 30.769 0.65 0.00 0.00 3.41
1734 4981 7.849804 TGTTTTTCTATGCTAGGATTGTCTC 57.150 36.000 0.65 0.00 0.00 3.36
1737 4984 5.798125 TTCTATGCTAGGATTGTCTCTGG 57.202 43.478 0.65 0.00 0.00 3.86
1739 4986 1.571955 TGCTAGGATTGTCTCTGGCA 58.428 50.000 0.00 0.00 43.44 4.92
1772 5019 7.391554 TCTTGTCTAATCTTTTGGATTCCACTG 59.608 37.037 4.45 0.00 42.96 3.66
1774 5021 7.004086 TGTCTAATCTTTTGGATTCCACTGTT 58.996 34.615 4.45 0.00 42.96 3.16
1775 5022 7.040478 TGTCTAATCTTTTGGATTCCACTGTTG 60.040 37.037 4.45 0.00 42.96 3.33
1778 5025 6.923199 ATCTTTTGGATTCCACTGTTGATT 57.077 33.333 4.45 0.00 30.78 2.57
1779 5026 6.729690 TCTTTTGGATTCCACTGTTGATTT 57.270 33.333 4.45 0.00 30.78 2.17
1780 5027 6.514947 TCTTTTGGATTCCACTGTTGATTTG 58.485 36.000 4.45 0.00 30.78 2.32
1782 5029 4.852134 TGGATTCCACTGTTGATTTGTG 57.148 40.909 0.00 0.00 0.00 3.33
1789 5036 3.979948 CACTGTTGATTTGTGGATTGCA 58.020 40.909 0.00 0.00 0.00 4.08
1790 5037 4.562082 CACTGTTGATTTGTGGATTGCAT 58.438 39.130 0.00 0.00 0.00 3.96
1794 5041 7.332430 CACTGTTGATTTGTGGATTGCATTATT 59.668 33.333 0.00 0.00 0.00 1.40
1796 5043 9.537192 CTGTTGATTTGTGGATTGCATTATTAT 57.463 29.630 0.00 0.00 0.00 1.28
1797 5044 9.531942 TGTTGATTTGTGGATTGCATTATTATC 57.468 29.630 0.00 0.00 0.00 1.75
1798 5045 8.981647 GTTGATTTGTGGATTGCATTATTATCC 58.018 33.333 7.32 7.32 38.63 2.59
1802 5049 7.658525 TTGTGGATTGCATTATTATCCTTGT 57.341 32.000 14.05 0.00 38.88 3.16
1803 5050 8.759481 TTGTGGATTGCATTATTATCCTTGTA 57.241 30.769 14.05 0.00 38.88 2.41
1804 5051 8.165239 TGTGGATTGCATTATTATCCTTGTAC 57.835 34.615 14.05 5.96 38.88 2.90
1805 5052 7.230510 TGTGGATTGCATTATTATCCTTGTACC 59.769 37.037 14.05 0.00 38.88 3.34
1806 5053 6.429692 TGGATTGCATTATTATCCTTGTACCG 59.570 38.462 14.05 0.00 38.88 4.02
1807 5054 6.653320 GGATTGCATTATTATCCTTGTACCGA 59.347 38.462 7.05 0.00 35.90 4.69
1808 5055 7.148407 GGATTGCATTATTATCCTTGTACCGAG 60.148 40.741 7.05 0.00 35.90 4.63
1810 5057 4.994852 GCATTATTATCCTTGTACCGAGCA 59.005 41.667 0.00 0.00 0.00 4.26
1817 5335 1.131126 CCTTGTACCGAGCATTGCTTG 59.869 52.381 17.58 17.58 39.88 4.01
1821 5339 1.661112 GTACCGAGCATTGCTTGACTC 59.339 52.381 24.66 11.49 42.27 3.36
1824 5342 1.129998 CCGAGCATTGCTTGACTCTTG 59.870 52.381 24.66 5.48 42.27 3.02
1827 5345 1.268899 AGCATTGCTTGACTCTTGCAC 59.731 47.619 5.03 0.00 33.89 4.57
1828 5346 1.268899 GCATTGCTTGACTCTTGCACT 59.731 47.619 0.16 0.00 36.37 4.40
1829 5347 2.485426 GCATTGCTTGACTCTTGCACTA 59.515 45.455 0.16 0.00 36.37 2.74
1830 5348 3.425892 GCATTGCTTGACTCTTGCACTAG 60.426 47.826 0.16 0.00 36.37 2.57
1831 5349 1.800805 TGCTTGACTCTTGCACTAGC 58.199 50.000 0.00 0.00 42.57 3.42
1832 5350 1.082690 GCTTGACTCTTGCACTAGCC 58.917 55.000 0.00 0.00 41.13 3.93
1833 5351 1.609061 GCTTGACTCTTGCACTAGCCA 60.609 52.381 0.00 0.00 41.13 4.75
1834 5352 2.938756 GCTTGACTCTTGCACTAGCCAT 60.939 50.000 0.00 0.00 41.13 4.40
1835 5353 3.341823 CTTGACTCTTGCACTAGCCATT 58.658 45.455 0.00 0.00 41.13 3.16
1836 5354 2.977914 TGACTCTTGCACTAGCCATTC 58.022 47.619 0.00 0.00 41.13 2.67
1837 5355 2.302733 TGACTCTTGCACTAGCCATTCA 59.697 45.455 0.00 0.00 41.13 2.57
1838 5356 3.054875 TGACTCTTGCACTAGCCATTCAT 60.055 43.478 0.00 0.00 41.13 2.57
1839 5357 4.162131 TGACTCTTGCACTAGCCATTCATA 59.838 41.667 0.00 0.00 41.13 2.15
1840 5358 4.446371 ACTCTTGCACTAGCCATTCATAC 58.554 43.478 0.00 0.00 41.13 2.39
1841 5359 4.080919 ACTCTTGCACTAGCCATTCATACA 60.081 41.667 0.00 0.00 41.13 2.29
1845 5483 3.452264 TGCACTAGCCATTCATACACTCT 59.548 43.478 0.00 0.00 41.13 3.24
1932 5576 6.852420 ATAGTTACTGCTTACTCCTCAACA 57.148 37.500 0.00 0.00 0.00 3.33
1935 5579 7.241042 AGTTACTGCTTACTCCTCAACATAA 57.759 36.000 0.00 0.00 0.00 1.90
1954 5598 5.416952 ACATAAGTTCTGGGCTTTGAATCAG 59.583 40.000 0.00 0.00 0.00 2.90
1963 5608 7.220030 TCTGGGCTTTGAATCAGTATCTATTC 58.780 38.462 0.00 0.00 33.57 1.75
1984 5629 9.806203 CTATTCATTAATGCATTCCTTGTTTCA 57.194 29.630 16.86 0.00 0.00 2.69
1992 5642 6.166984 TGCATTCCTTGTTTCATGGTTTTA 57.833 33.333 0.00 0.00 31.64 1.52
1993 5643 6.222389 TGCATTCCTTGTTTCATGGTTTTAG 58.778 36.000 0.00 0.00 31.64 1.85
1996 5646 7.226523 GCATTCCTTGTTTCATGGTTTTAGTTT 59.773 33.333 0.00 0.00 31.64 2.66
2000 5650 9.362151 TCCTTGTTTCATGGTTTTAGTTTCTAT 57.638 29.630 0.00 0.00 31.64 1.98
2001 5651 9.626045 CCTTGTTTCATGGTTTTAGTTTCTATC 57.374 33.333 0.00 0.00 0.00 2.08
2047 5711 9.897744 CTCTGTTCTTGTAAATGAAAATGCTTA 57.102 29.630 0.00 0.00 0.00 3.09
2076 5751 0.985490 TTTGTTGCCCTTTTGCCCCT 60.985 50.000 0.00 0.00 0.00 4.79
2139 5814 1.072159 GACCTGCCAGACTGTTGCT 59.928 57.895 0.93 0.00 0.00 3.91
2271 5960 2.175715 TGAGTAGAGGAGCATCTAGGCA 59.824 50.000 0.00 0.00 32.49 4.75
2272 5961 2.819608 GAGTAGAGGAGCATCTAGGCAG 59.180 54.545 0.00 0.00 32.49 4.85
2273 5962 1.892474 GTAGAGGAGCATCTAGGCAGG 59.108 57.143 0.00 0.00 32.49 4.85
2274 5963 1.120795 AGAGGAGCATCTAGGCAGGC 61.121 60.000 0.00 0.00 35.83 4.85
2299 5988 2.202298 CCGCCGCGTTGAATGAAC 60.202 61.111 12.58 0.00 0.00 3.18
2406 6095 0.250295 AGGTGGTGTCGGTGAACATG 60.250 55.000 0.00 0.00 0.00 3.21
2431 6120 2.095919 GGTCAGTGGTTATGTTTGCGAC 60.096 50.000 0.00 0.00 0.00 5.19
2455 6144 4.710324 ACAAGAAAAACCTATCGTGGTCA 58.290 39.130 0.00 0.00 39.83 4.02
2465 6154 1.266178 ATCGTGGTCAGTGGTCATCA 58.734 50.000 0.00 0.00 0.00 3.07
2497 6186 6.037786 ACTGAATCTTAATCGTCAAGTGGA 57.962 37.500 0.00 0.00 0.00 4.02
2510 6199 2.694628 TCAAGTGGAATGCTTTGCTTGT 59.305 40.909 5.47 0.00 35.96 3.16
2517 6206 5.119125 GTGGAATGCTTTGCTTGTTTATCAC 59.881 40.000 5.47 0.00 0.00 3.06
2519 6208 4.870123 ATGCTTTGCTTGTTTATCACCA 57.130 36.364 0.00 0.00 0.00 4.17
2543 6232 3.549423 CCTGTTCTGATTGTTGCTGTGTG 60.549 47.826 0.00 0.00 0.00 3.82
2558 6247 4.225208 GCTGTGTGATTTGAGCTTCTTTC 58.775 43.478 0.00 0.00 0.00 2.62
2575 6264 7.032377 CTTCTTTCTTGAAGCTTAACAACCT 57.968 36.000 0.00 0.00 37.27 3.50
2576 6265 6.377327 TCTTTCTTGAAGCTTAACAACCTG 57.623 37.500 0.00 0.00 35.24 4.00
2577 6266 5.885912 TCTTTCTTGAAGCTTAACAACCTGT 59.114 36.000 0.00 0.00 35.24 4.00
2578 6267 6.377146 TCTTTCTTGAAGCTTAACAACCTGTT 59.623 34.615 0.00 0.00 38.50 3.16
2579 6268 5.751243 TCTTGAAGCTTAACAACCTGTTC 57.249 39.130 0.00 0.00 40.22 3.18
2580 6269 5.437060 TCTTGAAGCTTAACAACCTGTTCT 58.563 37.500 0.00 0.00 40.22 3.01
2581 6270 5.527582 TCTTGAAGCTTAACAACCTGTTCTC 59.472 40.000 0.00 0.00 40.22 2.87
2582 6271 5.036117 TGAAGCTTAACAACCTGTTCTCT 57.964 39.130 0.00 0.00 40.22 3.10
2583 6272 5.437060 TGAAGCTTAACAACCTGTTCTCTT 58.563 37.500 0.00 0.00 40.22 2.85
2584 6273 6.588204 TGAAGCTTAACAACCTGTTCTCTTA 58.412 36.000 0.00 0.00 40.22 2.10
2585 6274 7.051623 TGAAGCTTAACAACCTGTTCTCTTAA 58.948 34.615 0.00 0.00 40.22 1.85
2586 6275 7.719633 TGAAGCTTAACAACCTGTTCTCTTAAT 59.280 33.333 0.00 0.00 40.22 1.40
2587 6276 7.674471 AGCTTAACAACCTGTTCTCTTAATC 57.326 36.000 0.00 0.00 40.22 1.75
2597 6286 4.194640 TGTTCTCTTAATCTGGATGCTGC 58.805 43.478 0.00 0.00 0.00 5.25
2632 6322 9.374838 GATTGGAATATTTGCAGATTTCTGTTT 57.625 29.630 9.21 0.00 45.45 2.83
2634 6324 9.638239 TTGGAATATTTGCAGATTTCTGTTTAC 57.362 29.630 9.21 0.00 45.45 2.01
2635 6325 9.023962 TGGAATATTTGCAGATTTCTGTTTACT 57.976 29.630 9.21 0.00 45.45 2.24
2636 6326 9.294030 GGAATATTTGCAGATTTCTGTTTACTG 57.706 33.333 9.21 0.00 45.45 2.74
2640 6330 8.947055 ATTTGCAGATTTCTGTTTACTGTTTT 57.053 26.923 9.21 0.00 45.45 2.43
2642 6332 7.754069 TGCAGATTTCTGTTTACTGTTTTTG 57.246 32.000 9.21 0.00 45.45 2.44
2644 6334 6.756542 GCAGATTTCTGTTTACTGTTTTTGGT 59.243 34.615 9.21 0.00 45.45 3.67
2645 6335 7.277760 GCAGATTTCTGTTTACTGTTTTTGGTT 59.722 33.333 9.21 0.00 45.45 3.67
2646 6336 9.796120 CAGATTTCTGTTTACTGTTTTTGGTTA 57.204 29.630 0.00 0.00 39.09 2.85
2669 6381 8.840321 GTTATATATGTTTCTGTTGTGCCTGAT 58.160 33.333 0.00 0.00 0.00 2.90
2670 6382 3.928727 ATGTTTCTGTTGTGCCTGATG 57.071 42.857 0.00 0.00 0.00 3.07
2671 6383 2.929641 TGTTTCTGTTGTGCCTGATGA 58.070 42.857 0.00 0.00 0.00 2.92
2672 6384 2.880268 TGTTTCTGTTGTGCCTGATGAG 59.120 45.455 0.00 0.00 0.00 2.90
2673 6385 3.141398 GTTTCTGTTGTGCCTGATGAGA 58.859 45.455 0.00 0.00 0.00 3.27
2674 6386 2.756840 TCTGTTGTGCCTGATGAGAG 57.243 50.000 0.00 0.00 0.00 3.20
2675 6387 1.085091 CTGTTGTGCCTGATGAGAGC 58.915 55.000 0.00 0.00 0.00 4.09
2676 6388 0.397564 TGTTGTGCCTGATGAGAGCA 59.602 50.000 0.00 0.00 0.00 4.26
2677 6389 1.202794 TGTTGTGCCTGATGAGAGCAA 60.203 47.619 0.00 0.00 38.45 3.91
2678 6390 1.881973 GTTGTGCCTGATGAGAGCAAA 59.118 47.619 0.00 0.00 38.45 3.68
2688 6410 5.632347 CCTGATGAGAGCAAACAAATTGTTC 59.368 40.000 12.11 0.65 46.30 3.18
2709 6431 1.340405 TGGGCCTCTGATTTCTGAAGC 60.340 52.381 4.53 0.79 32.59 3.86
2710 6432 1.387539 GGCCTCTGATTTCTGAAGCC 58.612 55.000 10.23 10.23 41.81 4.35
2841 6564 0.749454 ATCCTGGCGCCTCATGTTTC 60.749 55.000 29.70 0.00 0.00 2.78
2860 6583 6.467677 TGTTTCCTTCTCAACCTGATAAGAG 58.532 40.000 3.98 0.00 33.86 2.85
3078 6811 1.000736 GCGCTGCTCTGTTTCTTTGC 61.001 55.000 0.00 0.00 0.00 3.68
3083 6816 3.369385 CTGCTCTGTTTCTTTGCTGTTG 58.631 45.455 0.00 0.00 0.00 3.33
3131 6887 9.234384 GATGATAACAGATGCTGAATTTTCTTG 57.766 33.333 0.82 0.00 35.18 3.02
3180 6936 4.023291 AGAAGAAGACCATCCTCTCTGTC 58.977 47.826 0.00 0.00 0.00 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 0.390735 CTACGAAACTCGGTTGGGGG 60.391 60.000 0.67 0.00 45.59 5.40
3 4 0.390735 CCTACGAAACTCGGTTGGGG 60.391 60.000 0.67 0.00 45.59 4.96
6 7 1.271656 AGACCCTACGAAACTCGGTTG 59.728 52.381 0.67 0.00 45.59 3.77
7 8 1.625511 AGACCCTACGAAACTCGGTT 58.374 50.000 0.67 0.00 45.59 4.44
8 9 2.496899 TAGACCCTACGAAACTCGGT 57.503 50.000 0.67 0.00 45.59 4.69
9 10 3.212685 AGATAGACCCTACGAAACTCGG 58.787 50.000 0.67 0.00 45.59 4.63
10 11 4.213059 GGTAGATAGACCCTACGAAACTCG 59.787 50.000 0.00 0.00 38.57 4.18
11 12 5.128919 TGGTAGATAGACCCTACGAAACTC 58.871 45.833 0.00 0.00 38.89 3.01
13 14 6.040166 TGAATGGTAGATAGACCCTACGAAAC 59.960 42.308 0.00 0.00 38.89 2.78
14 15 6.131264 TGAATGGTAGATAGACCCTACGAAA 58.869 40.000 0.00 0.00 38.89 3.46
15 16 5.698104 TGAATGGTAGATAGACCCTACGAA 58.302 41.667 0.00 0.00 38.89 3.85
16 17 5.314718 TGAATGGTAGATAGACCCTACGA 57.685 43.478 0.00 0.00 38.89 3.43
17 18 6.208797 TGAATGAATGGTAGATAGACCCTACG 59.791 42.308 0.00 0.00 38.89 3.51
21 22 5.703130 GCTTGAATGAATGGTAGATAGACCC 59.297 44.000 0.00 0.00 38.89 4.46
23 24 6.763135 TGTGCTTGAATGAATGGTAGATAGAC 59.237 38.462 0.00 0.00 0.00 2.59
24 25 6.888105 TGTGCTTGAATGAATGGTAGATAGA 58.112 36.000 0.00 0.00 0.00 1.98
35 2727 3.896888 AGGTGGAATTGTGCTTGAATGAA 59.103 39.130 0.00 0.00 0.00 2.57
39 2731 5.335583 CGATTAAGGTGGAATTGTGCTTGAA 60.336 40.000 0.00 0.00 0.00 2.69
100 2792 2.971330 ACATTTTTGTGGCTCCATGGAA 59.029 40.909 17.00 0.00 0.00 3.53
126 2818 3.199677 GTTTAACAAGGTTTTGCCCCAC 58.800 45.455 0.00 0.00 37.85 4.61
167 2859 6.408035 TGATTAGCATGCATTTTTCAATGGT 58.592 32.000 21.98 0.00 40.36 3.55
172 2864 7.097834 TGACAATGATTAGCATGCATTTTTCA 58.902 30.769 21.98 14.75 37.28 2.69
180 2872 6.609237 TTAGACTGACAATGATTAGCATGC 57.391 37.500 10.51 10.51 37.28 4.06
196 2888 6.409704 TGATGAGGTCCTTTCATTTAGACTG 58.590 40.000 0.00 0.00 35.50 3.51
211 2903 3.921677 TCGGTACAAGTTTGATGAGGTC 58.078 45.455 0.00 0.00 0.00 3.85
215 2907 8.786826 ATTTCTTATCGGTACAAGTTTGATGA 57.213 30.769 0.00 0.00 0.00 2.92
226 2918 7.619964 TTTGGAAGGAATTTCTTATCGGTAC 57.380 36.000 0.00 0.00 36.03 3.34
229 2921 8.903820 ACTAATTTGGAAGGAATTTCTTATCGG 58.096 33.333 0.00 0.00 36.03 4.18
290 2982 3.894947 GGTTGGGCAACGCGTTGT 61.895 61.111 41.95 15.91 42.02 3.32
346 3038 5.437289 TGGAAATTCTATTATTGCGGCAG 57.563 39.130 1.67 0.00 0.00 4.85
347 3039 5.769662 AGATGGAAATTCTATTATTGCGGCA 59.230 36.000 0.00 0.00 0.00 5.69
348 3040 6.259550 AGATGGAAATTCTATTATTGCGGC 57.740 37.500 0.00 0.00 0.00 6.53
350 3042 9.956720 AGAAAAGATGGAAATTCTATTATTGCG 57.043 29.630 0.00 0.00 30.69 4.85
362 3054 5.619981 CGGCGAAAGAAGAAAAGATGGAAAT 60.620 40.000 0.00 0.00 0.00 2.17
393 3085 4.105697 AGGTAACCCTAGAGAGATGAGGAG 59.894 50.000 0.00 0.00 40.19 3.69
423 3115 4.676018 GCGAGATCTGTCGGATTTAGTTAC 59.324 45.833 0.00 0.00 40.44 2.50
433 3125 0.820074 ACCCTAGCGAGATCTGTCGG 60.820 60.000 0.00 0.00 40.44 4.79
479 3171 0.618968 AGTCCCACCATCACCTCCTC 60.619 60.000 0.00 0.00 0.00 3.71
486 3178 0.545071 TCTGAGCAGTCCCACCATCA 60.545 55.000 0.00 0.00 0.00 3.07
488 3180 0.837691 TGTCTGAGCAGTCCCACCAT 60.838 55.000 0.00 0.00 0.00 3.55
489 3181 1.053835 TTGTCTGAGCAGTCCCACCA 61.054 55.000 0.00 0.00 0.00 4.17
509 3224 5.298276 CCTAGACACATCTCTTCTGTCCTAC 59.702 48.000 0.00 0.00 35.83 3.18
511 3226 4.017958 TCCTAGACACATCTCTTCTGTCCT 60.018 45.833 0.00 0.00 35.83 3.85
512 3227 4.274147 TCCTAGACACATCTCTTCTGTCC 58.726 47.826 0.00 0.00 35.83 4.02
517 3232 5.354792 ACGTAGTTCCTAGACACATCTCTTC 59.645 44.000 0.00 0.00 37.78 2.87
525 3240 6.591834 TCACTAAGTACGTAGTTCCTAGACAC 59.408 42.308 18.66 0.00 37.78 3.67
526 3241 6.591834 GTCACTAAGTACGTAGTTCCTAGACA 59.408 42.308 18.66 0.00 37.78 3.41
527 3242 6.237701 CGTCACTAAGTACGTAGTTCCTAGAC 60.238 46.154 18.66 17.92 37.78 2.59
528 3243 5.807520 CGTCACTAAGTACGTAGTTCCTAGA 59.192 44.000 18.66 9.61 37.78 2.43
529 3244 6.030379 CGTCACTAAGTACGTAGTTCCTAG 57.970 45.833 18.66 13.21 37.78 3.02
531 3246 4.935885 CGTCACTAAGTACGTAGTTCCT 57.064 45.455 18.66 3.08 37.78 3.36
543 3258 5.445673 CGTCCTCTACAAGTACGTCACTAAG 60.446 48.000 0.00 0.00 36.04 2.18
559 3274 5.601729 TCATCTCCTACTAGTTCGTCCTCTA 59.398 44.000 0.00 0.00 0.00 2.43
568 3283 5.600484 CACCCTTCATCATCTCCTACTAGTT 59.400 44.000 0.00 0.00 0.00 2.24
569 3284 5.144100 CACCCTTCATCATCTCCTACTAGT 58.856 45.833 0.00 0.00 0.00 2.57
577 3292 2.485124 CCTCTGCACCCTTCATCATCTC 60.485 54.545 0.00 0.00 0.00 2.75
584 3299 0.907486 CATCTCCTCTGCACCCTTCA 59.093 55.000 0.00 0.00 0.00 3.02
620 3335 1.395954 CATCATCTCTGTTGTGCACGG 59.604 52.381 13.13 2.53 0.00 4.94
621 3336 1.201998 GCATCATCTCTGTTGTGCACG 60.202 52.381 13.13 0.00 33.09 5.34
623 3338 1.003928 AGGCATCATCTCTGTTGTGCA 59.996 47.619 0.00 0.00 34.45 4.57
625 3340 2.286872 GGAGGCATCATCTCTGTTGTG 58.713 52.381 0.00 0.00 0.00 3.33
626 3341 1.134580 CGGAGGCATCATCTCTGTTGT 60.135 52.381 0.00 0.00 34.01 3.32
636 3377 2.101415 CAGATCTAACACGGAGGCATCA 59.899 50.000 0.00 0.00 0.00 3.07
639 3380 0.824109 CCAGATCTAACACGGAGGCA 59.176 55.000 0.00 0.00 0.00 4.75
643 3420 3.026707 TGGATCCAGATCTAACACGGA 57.973 47.619 11.44 0.00 37.92 4.69
646 3423 4.696479 ACCATGGATCCAGATCTAACAC 57.304 45.455 21.47 0.00 37.92 3.32
647 3424 5.039920 CAACCATGGATCCAGATCTAACA 57.960 43.478 21.47 0.00 37.92 2.41
676 3473 1.271379 ACTTTGTATCTGTCGTGCGGA 59.729 47.619 0.00 0.00 36.82 5.54
685 3482 3.314913 TGCACAACACCACTTTGTATCTG 59.685 43.478 0.00 0.00 35.38 2.90
691 3488 2.923020 GACTTTGCACAACACCACTTTG 59.077 45.455 0.00 0.00 0.00 2.77
719 3516 1.588404 CTGTATCTAACGCACGCAAGG 59.412 52.381 0.00 0.00 46.39 3.61
743 3544 3.107642 ACAAAAGTTCGATGACCGTCT 57.892 42.857 0.00 0.00 39.75 4.18
766 3567 9.995003 AATTTTGACCAAATTTGATTGCTACTA 57.005 25.926 19.86 0.00 41.57 1.82
767 3568 8.907222 AATTTTGACCAAATTTGATTGCTACT 57.093 26.923 19.86 0.00 41.57 2.57
772 3573 7.188468 ACCGAATTTTGACCAAATTTGATTG 57.812 32.000 19.86 5.60 44.56 2.67
773 3574 7.800155 AACCGAATTTTGACCAAATTTGATT 57.200 28.000 19.86 9.67 44.56 2.57
774 3575 7.800155 AAACCGAATTTTGACCAAATTTGAT 57.200 28.000 19.86 1.03 44.56 2.57
775 3576 7.617041 AAAACCGAATTTTGACCAAATTTGA 57.383 28.000 19.86 0.00 44.56 2.69
807 3608 2.194271 GTATCTCGCAAGGAAACGGAG 58.806 52.381 0.00 0.00 38.47 4.63
820 3628 2.840673 CTATCTGCCGTTCGTATCTCG 58.159 52.381 0.00 0.00 41.41 4.04
821 3629 2.586900 GCTATCTGCCGTTCGTATCTC 58.413 52.381 0.00 0.00 35.15 2.75
822 3630 2.708386 GCTATCTGCCGTTCGTATCT 57.292 50.000 0.00 0.00 35.15 1.98
835 3643 0.322975 GCGTGGATGGATGGCTATCT 59.677 55.000 10.15 0.00 33.00 1.98
842 3650 0.460109 TCAAGACGCGTGGATGGATG 60.460 55.000 20.70 4.78 0.00 3.51
847 3655 6.671614 TTTATTTATTCAAGACGCGTGGAT 57.328 33.333 20.70 5.13 0.00 3.41
857 3665 8.201464 GGTGGGTTGGGTATTTATTTATTCAAG 58.799 37.037 0.00 0.00 0.00 3.02
858 3666 7.125963 GGGTGGGTTGGGTATTTATTTATTCAA 59.874 37.037 0.00 0.00 0.00 2.69
860 3680 6.042322 GGGGTGGGTTGGGTATTTATTTATTC 59.958 42.308 0.00 0.00 0.00 1.75
887 3711 4.904590 TTTGGTGCGGGGTGGGTG 62.905 66.667 0.00 0.00 0.00 4.61
888 3712 4.596585 CTTTGGTGCGGGGTGGGT 62.597 66.667 0.00 0.00 0.00 4.51
890 3714 4.974721 AGCTTTGGTGCGGGGTGG 62.975 66.667 0.00 0.00 38.13 4.61
891 3715 3.365265 GAGCTTTGGTGCGGGGTG 61.365 66.667 0.00 0.00 38.13 4.61
892 3716 4.660938 GGAGCTTTGGTGCGGGGT 62.661 66.667 0.00 0.00 38.13 4.95
895 3719 3.058160 CTGGGAGCTTTGGTGCGG 61.058 66.667 0.00 0.00 38.13 5.69
932 3764 1.872679 GAAACTCTAGTCGCGGCGG 60.873 63.158 23.46 7.55 0.00 6.13
952 3784 1.318158 GGGAGACGAAACCCTAGCGA 61.318 60.000 0.00 0.00 42.56 4.93
972 3804 3.746949 CTGCTGCTGGATCCGGACC 62.747 68.421 25.54 11.46 0.00 4.46
974 3806 4.166888 GCTGCTGCTGGATCCGGA 62.167 66.667 25.54 6.61 36.03 5.14
977 3811 3.210528 GCTGCTGCTGCTGGATCC 61.211 66.667 22.10 4.20 40.48 3.36
1041 3882 2.995872 GCCGTCCGAGCTCTTGAGT 61.996 63.158 12.85 0.00 0.00 3.41
1379 4261 7.201741 CCAGAAACAGTACAGATCTAGAATCGA 60.202 40.741 0.00 0.00 0.00 3.59
1381 4263 6.699642 GCCAGAAACAGTACAGATCTAGAATC 59.300 42.308 0.00 0.00 0.00 2.52
1382 4264 6.407525 GGCCAGAAACAGTACAGATCTAGAAT 60.408 42.308 0.00 0.00 0.00 2.40
1394 4287 1.295423 GAGCCGGCCAGAAACAGTA 59.705 57.895 26.15 0.00 0.00 2.74
1395 4288 2.032681 GAGCCGGCCAGAAACAGT 59.967 61.111 26.15 0.00 0.00 3.55
1406 4299 2.721971 CCAATCTGGATCCGAGCCGG 62.722 65.000 7.39 5.03 44.38 6.13
1407 4300 1.301244 CCAATCTGGATCCGAGCCG 60.301 63.158 7.39 0.00 40.96 5.52
1434 4365 1.657094 CCGTCCAATCGAACCTAAACG 59.343 52.381 0.00 0.00 0.00 3.60
1455 4386 4.272489 AGCCCAATCAAATCGAATCTTGA 58.728 39.130 9.54 9.54 36.08 3.02
1457 4393 4.823989 CCTAGCCCAATCAAATCGAATCTT 59.176 41.667 0.00 0.00 0.00 2.40
1468 4424 4.475381 TGTATGTAAACCCTAGCCCAATCA 59.525 41.667 0.00 0.00 0.00 2.57
1473 4429 4.699925 TCATGTATGTAAACCCTAGCCC 57.300 45.455 0.00 0.00 0.00 5.19
1476 4432 6.299141 AGCCAATCATGTATGTAAACCCTAG 58.701 40.000 0.00 0.00 0.00 3.02
1510 4467 5.316987 ACCTAACAAATCTCTGTCCTTTGG 58.683 41.667 0.00 0.00 34.86 3.28
1526 4503 7.392113 CACAATCATGTAAACCCTAACCTAACA 59.608 37.037 0.00 0.00 37.82 2.41
1527 4504 7.148137 CCACAATCATGTAAACCCTAACCTAAC 60.148 40.741 0.00 0.00 37.82 2.34
1612 4677 3.971971 TCCAGGCCTAATAAGGTAAGGTC 59.028 47.826 3.98 0.00 45.64 3.85
1617 4682 6.841781 AGAATTTCCAGGCCTAATAAGGTA 57.158 37.500 3.98 0.00 45.64 3.08
1618 4683 5.734031 AGAATTTCCAGGCCTAATAAGGT 57.266 39.130 3.98 0.00 45.64 3.50
1619 4684 7.694093 AGATAGAATTTCCAGGCCTAATAAGG 58.306 38.462 3.98 1.20 46.76 2.69
1627 4757 5.471456 CACACATAGATAGAATTTCCAGGCC 59.529 44.000 0.00 0.00 0.00 5.19
1631 4761 8.033178 TCATCCACACATAGATAGAATTTCCA 57.967 34.615 0.00 0.00 0.00 3.53
1639 4769 9.334947 AGAAACAATTCATCCACACATAGATAG 57.665 33.333 0.00 0.00 38.06 2.08
1642 4772 9.330063 GATAGAAACAATTCATCCACACATAGA 57.670 33.333 0.00 0.00 38.06 1.98
1711 4958 7.011857 CCAGAGACAATCCTAGCATAGAAAAAC 59.988 40.741 0.00 0.00 42.77 2.43
1712 4959 7.050377 CCAGAGACAATCCTAGCATAGAAAAA 58.950 38.462 0.00 0.00 42.77 1.94
1713 4960 6.586344 CCAGAGACAATCCTAGCATAGAAAA 58.414 40.000 0.00 0.00 42.77 2.29
1721 4968 2.926778 ATGCCAGAGACAATCCTAGC 57.073 50.000 0.00 0.00 0.00 3.42
1722 4969 8.538701 AGATAATAATGCCAGAGACAATCCTAG 58.461 37.037 0.00 0.00 0.00 3.02
1723 4970 8.441311 AGATAATAATGCCAGAGACAATCCTA 57.559 34.615 0.00 0.00 0.00 2.94
1724 4971 7.327064 AGATAATAATGCCAGAGACAATCCT 57.673 36.000 0.00 0.00 0.00 3.24
1725 4972 7.446625 ACAAGATAATAATGCCAGAGACAATCC 59.553 37.037 0.00 0.00 0.00 3.01
1726 4973 8.388484 ACAAGATAATAATGCCAGAGACAATC 57.612 34.615 0.00 0.00 0.00 2.67
1727 4974 8.216423 AGACAAGATAATAATGCCAGAGACAAT 58.784 33.333 0.00 0.00 0.00 2.71
1728 4975 7.568349 AGACAAGATAATAATGCCAGAGACAA 58.432 34.615 0.00 0.00 0.00 3.18
1729 4976 7.129457 AGACAAGATAATAATGCCAGAGACA 57.871 36.000 0.00 0.00 0.00 3.41
1730 4977 9.717942 ATTAGACAAGATAATAATGCCAGAGAC 57.282 33.333 0.00 0.00 0.00 3.36
1731 4978 9.935241 GATTAGACAAGATAATAATGCCAGAGA 57.065 33.333 0.00 0.00 0.00 3.10
1732 4979 9.941325 AGATTAGACAAGATAATAATGCCAGAG 57.059 33.333 0.00 0.00 0.00 3.35
1760 5007 5.199024 CACAAATCAACAGTGGAATCCAA 57.801 39.130 2.31 0.00 34.18 3.53
1768 5015 3.979948 TGCAATCCACAAATCAACAGTG 58.020 40.909 0.00 0.00 0.00 3.66
1772 5019 8.981647 GGATAATAATGCAATCCACAAATCAAC 58.018 33.333 9.12 0.00 39.24 3.18
1774 5021 8.481492 AGGATAATAATGCAATCCACAAATCA 57.519 30.769 15.16 0.00 41.44 2.57
1775 5022 9.199982 CAAGGATAATAATGCAATCCACAAATC 57.800 33.333 15.16 1.34 41.44 2.17
1778 5025 7.658525 ACAAGGATAATAATGCAATCCACAA 57.341 32.000 15.16 0.00 41.44 3.33
1779 5026 7.230510 GGTACAAGGATAATAATGCAATCCACA 59.769 37.037 15.16 0.00 41.44 4.17
1780 5027 7.573096 CGGTACAAGGATAATAATGCAATCCAC 60.573 40.741 15.16 5.80 41.44 4.02
1782 5029 6.653320 TCGGTACAAGGATAATAATGCAATCC 59.347 38.462 6.28 6.28 39.64 3.01
1783 5030 7.624344 GCTCGGTACAAGGATAATAATGCAATC 60.624 40.741 0.00 0.00 0.00 2.67
1784 5031 6.149474 GCTCGGTACAAGGATAATAATGCAAT 59.851 38.462 0.00 0.00 0.00 3.56
1786 5033 4.994852 GCTCGGTACAAGGATAATAATGCA 59.005 41.667 0.00 0.00 0.00 3.96
1787 5034 4.994852 TGCTCGGTACAAGGATAATAATGC 59.005 41.667 0.00 0.00 0.00 3.56
1788 5035 7.521529 CAATGCTCGGTACAAGGATAATAATG 58.478 38.462 0.00 0.00 0.00 1.90
1789 5036 6.149474 GCAATGCTCGGTACAAGGATAATAAT 59.851 38.462 0.00 0.00 0.00 1.28
1790 5037 5.468746 GCAATGCTCGGTACAAGGATAATAA 59.531 40.000 0.00 0.00 0.00 1.40
1794 5041 2.434336 AGCAATGCTCGGTACAAGGATA 59.566 45.455 0.00 0.00 30.62 2.59
1796 5043 0.613260 AGCAATGCTCGGTACAAGGA 59.387 50.000 0.00 0.00 30.62 3.36
1797 5044 1.131126 CAAGCAATGCTCGGTACAAGG 59.869 52.381 8.71 0.00 38.25 3.61
1798 5045 2.076100 TCAAGCAATGCTCGGTACAAG 58.924 47.619 8.71 0.00 38.25 3.16
1802 5049 1.550524 AGAGTCAAGCAATGCTCGGTA 59.449 47.619 8.71 0.00 38.25 4.02
1803 5050 0.322975 AGAGTCAAGCAATGCTCGGT 59.677 50.000 8.71 0.00 38.25 4.69
1804 5051 1.129998 CAAGAGTCAAGCAATGCTCGG 59.870 52.381 8.71 4.19 38.25 4.63
1805 5052 1.465354 GCAAGAGTCAAGCAATGCTCG 60.465 52.381 8.71 0.00 38.25 5.03
1806 5053 1.538512 TGCAAGAGTCAAGCAATGCTC 59.461 47.619 8.71 0.00 38.25 4.26
1807 5054 1.268899 GTGCAAGAGTCAAGCAATGCT 59.731 47.619 0.00 0.00 42.56 3.79
1808 5055 1.268899 AGTGCAAGAGTCAAGCAATGC 59.731 47.619 10.58 0.00 40.35 3.56
1810 5057 2.746362 GCTAGTGCAAGAGTCAAGCAAT 59.254 45.455 13.04 13.04 40.35 3.56
1817 5335 2.977914 TGAATGGCTAGTGCAAGAGTC 58.022 47.619 0.00 0.00 41.91 3.36
1821 5339 4.194640 AGTGTATGAATGGCTAGTGCAAG 58.805 43.478 0.00 0.00 41.91 4.01
1824 5342 3.806521 CAGAGTGTATGAATGGCTAGTGC 59.193 47.826 0.00 0.00 38.76 4.40
1827 5345 4.039004 AGAGCAGAGTGTATGAATGGCTAG 59.961 45.833 0.00 0.00 0.00 3.42
1828 5346 3.963374 AGAGCAGAGTGTATGAATGGCTA 59.037 43.478 0.00 0.00 0.00 3.93
1829 5347 2.770802 AGAGCAGAGTGTATGAATGGCT 59.229 45.455 0.00 0.00 0.00 4.75
1830 5348 2.871022 CAGAGCAGAGTGTATGAATGGC 59.129 50.000 0.00 0.00 0.00 4.40
1831 5349 4.118410 GTCAGAGCAGAGTGTATGAATGG 58.882 47.826 0.00 0.00 0.00 3.16
1832 5350 5.008619 AGTCAGAGCAGAGTGTATGAATG 57.991 43.478 0.00 0.00 0.00 2.67
1833 5351 4.955450 AGAGTCAGAGCAGAGTGTATGAAT 59.045 41.667 0.00 0.00 0.00 2.57
1834 5352 4.157472 CAGAGTCAGAGCAGAGTGTATGAA 59.843 45.833 0.00 0.00 0.00 2.57
1835 5353 3.693578 CAGAGTCAGAGCAGAGTGTATGA 59.306 47.826 0.00 0.00 0.00 2.15
1836 5354 3.443329 ACAGAGTCAGAGCAGAGTGTATG 59.557 47.826 0.00 0.00 0.00 2.39
1837 5355 3.696045 ACAGAGTCAGAGCAGAGTGTAT 58.304 45.455 0.00 0.00 0.00 2.29
1838 5356 3.147553 ACAGAGTCAGAGCAGAGTGTA 57.852 47.619 0.00 0.00 0.00 2.90
1839 5357 1.993956 ACAGAGTCAGAGCAGAGTGT 58.006 50.000 0.00 0.00 0.00 3.55
1840 5358 3.383620 AAACAGAGTCAGAGCAGAGTG 57.616 47.619 0.00 0.00 0.00 3.51
1841 5359 3.133721 ACAAAACAGAGTCAGAGCAGAGT 59.866 43.478 0.00 0.00 0.00 3.24
1845 5483 4.765273 TGTAACAAAACAGAGTCAGAGCA 58.235 39.130 0.00 0.00 0.00 4.26
1918 5562 5.582665 CCAGAACTTATGTTGAGGAGTAAGC 59.417 44.000 0.00 0.00 36.39 3.09
1921 5565 4.081087 GCCCAGAACTTATGTTGAGGAGTA 60.081 45.833 0.00 0.00 36.39 2.59
1924 5568 2.912956 AGCCCAGAACTTATGTTGAGGA 59.087 45.455 0.00 0.00 36.39 3.71
1932 5576 5.574188 ACTGATTCAAAGCCCAGAACTTAT 58.426 37.500 0.00 0.00 0.00 1.73
1935 5579 3.515602 ACTGATTCAAAGCCCAGAACT 57.484 42.857 0.00 0.00 0.00 3.01
1963 5608 6.819649 ACCATGAAACAAGGAATGCATTAATG 59.180 34.615 12.97 11.27 0.00 1.90
2047 5711 6.873605 GCAAAAGGGCAACAAACTAATAAGAT 59.126 34.615 0.00 0.00 39.74 2.40
2051 5715 4.262678 GGGCAAAAGGGCAACAAACTAATA 60.263 41.667 0.00 0.00 45.66 0.98
2053 5717 2.158885 GGGCAAAAGGGCAACAAACTAA 60.159 45.455 0.00 0.00 45.66 2.24
2054 5718 1.414550 GGGCAAAAGGGCAACAAACTA 59.585 47.619 0.00 0.00 45.66 2.24
2055 5719 0.180171 GGGCAAAAGGGCAACAAACT 59.820 50.000 0.00 0.00 45.66 2.66
2057 5721 0.985490 AGGGGCAAAAGGGCAACAAA 60.985 50.000 0.00 0.00 45.66 2.83
2076 5751 0.324943 GGTAGTTGGCAGCCTGAGAA 59.675 55.000 14.15 0.00 0.00 2.87
2139 5814 2.618816 GGTCTTGCCCTTGATCATGTCA 60.619 50.000 0.00 0.00 34.25 3.58
2163 5838 0.032615 AGGTCTTGCGGATCTCCTCT 60.033 55.000 0.00 0.00 27.03 3.69
2290 5979 3.684103 AAGCGTTGTTCGTTCATTCAA 57.316 38.095 0.00 0.00 42.13 2.69
2291 5980 3.805422 ACTAAGCGTTGTTCGTTCATTCA 59.195 39.130 0.00 0.00 42.13 2.57
2292 5981 4.385244 ACTAAGCGTTGTTCGTTCATTC 57.615 40.909 0.00 0.00 42.13 2.67
2293 5982 6.476243 AATACTAAGCGTTGTTCGTTCATT 57.524 33.333 0.00 0.00 42.13 2.57
2294 5983 5.220154 CGAATACTAAGCGTTGTTCGTTCAT 60.220 40.000 0.00 0.00 42.13 2.57
2299 5988 3.605056 TGACGAATACTAAGCGTTGTTCG 59.395 43.478 6.73 6.73 42.81 3.95
2406 6095 3.608474 GCAAACATAACCACTGACCGAAC 60.608 47.826 0.00 0.00 0.00 3.95
2431 6120 5.008217 TGACCACGATAGGTTTTTCTTGTTG 59.992 40.000 0.00 0.00 43.38 3.33
2465 6154 7.441157 TGACGATTAAGATTCAGTTTGACAAGT 59.559 33.333 0.00 0.00 0.00 3.16
2497 6186 5.212532 TGGTGATAAACAAGCAAAGCATT 57.787 34.783 0.00 0.00 0.00 3.56
2510 6199 6.484288 ACAATCAGAACAGGATGGTGATAAA 58.516 36.000 0.00 0.00 33.00 1.40
2517 6206 3.087031 AGCAACAATCAGAACAGGATGG 58.913 45.455 0.00 0.00 43.62 3.51
2519 6208 3.504906 CACAGCAACAATCAGAACAGGAT 59.495 43.478 0.00 0.00 0.00 3.24
2558 6247 5.529060 AGAGAACAGGTTGTTAAGCTTCAAG 59.471 40.000 0.00 0.00 41.28 3.02
2570 6259 5.065731 GCATCCAGATTAAGAGAACAGGTTG 59.934 44.000 0.00 0.00 0.00 3.77
2571 6260 5.045286 AGCATCCAGATTAAGAGAACAGGTT 60.045 40.000 0.00 0.00 0.00 3.50
2572 6261 4.472833 AGCATCCAGATTAAGAGAACAGGT 59.527 41.667 0.00 0.00 0.00 4.00
2573 6262 4.815308 CAGCATCCAGATTAAGAGAACAGG 59.185 45.833 0.00 0.00 0.00 4.00
2574 6263 4.272991 GCAGCATCCAGATTAAGAGAACAG 59.727 45.833 0.00 0.00 0.00 3.16
2575 6264 4.080695 AGCAGCATCCAGATTAAGAGAACA 60.081 41.667 0.00 0.00 0.00 3.18
2576 6265 4.450053 AGCAGCATCCAGATTAAGAGAAC 58.550 43.478 0.00 0.00 0.00 3.01
2577 6266 4.767578 AGCAGCATCCAGATTAAGAGAA 57.232 40.909 0.00 0.00 0.00 2.87
2578 6267 4.408270 AGAAGCAGCATCCAGATTAAGAGA 59.592 41.667 0.00 0.00 0.00 3.10
2579 6268 4.706035 AGAAGCAGCATCCAGATTAAGAG 58.294 43.478 0.00 0.00 0.00 2.85
2580 6269 4.767578 AGAAGCAGCATCCAGATTAAGA 57.232 40.909 0.00 0.00 0.00 2.10
2581 6270 5.831702 AAAGAAGCAGCATCCAGATTAAG 57.168 39.130 0.00 0.00 0.00 1.85
2582 6271 7.112122 TCTTAAAGAAGCAGCATCCAGATTAA 58.888 34.615 0.00 0.00 32.21 1.40
2583 6272 6.653020 TCTTAAAGAAGCAGCATCCAGATTA 58.347 36.000 0.00 0.00 32.21 1.75
2584 6273 5.503927 TCTTAAAGAAGCAGCATCCAGATT 58.496 37.500 0.00 0.00 32.21 2.40
2585 6274 5.108187 TCTTAAAGAAGCAGCATCCAGAT 57.892 39.130 0.00 0.00 32.21 2.90
2586 6275 4.558226 TCTTAAAGAAGCAGCATCCAGA 57.442 40.909 0.00 0.00 32.21 3.86
2587 6276 5.450137 CCAATCTTAAAGAAGCAGCATCCAG 60.450 44.000 0.00 0.00 32.21 3.86
2638 6328 9.632807 GCACAACAGAAACATATATAACCAAAA 57.367 29.630 0.00 0.00 0.00 2.44
2639 6329 8.247562 GGCACAACAGAAACATATATAACCAAA 58.752 33.333 0.00 0.00 0.00 3.28
2640 6330 7.613801 AGGCACAACAGAAACATATATAACCAA 59.386 33.333 0.00 0.00 0.00 3.67
2642 6332 7.282224 TCAGGCACAACAGAAACATATATAACC 59.718 37.037 0.00 0.00 0.00 2.85
2644 6334 8.839343 CATCAGGCACAACAGAAACATATATAA 58.161 33.333 0.00 0.00 0.00 0.98
2645 6335 8.210265 TCATCAGGCACAACAGAAACATATATA 58.790 33.333 0.00 0.00 0.00 0.86
2646 6336 7.056006 TCATCAGGCACAACAGAAACATATAT 58.944 34.615 0.00 0.00 0.00 0.86
2652 6364 3.141398 TCTCATCAGGCACAACAGAAAC 58.859 45.455 0.00 0.00 0.00 2.78
2669 6381 4.202141 CCCAGAACAATTTGTTTGCTCTCA 60.202 41.667 15.54 0.00 41.28 3.27
2670 6382 4.301628 CCCAGAACAATTTGTTTGCTCTC 58.698 43.478 15.54 2.77 41.28 3.20
2671 6383 3.493176 GCCCAGAACAATTTGTTTGCTCT 60.493 43.478 15.54 6.01 41.28 4.09
2672 6384 2.802247 GCCCAGAACAATTTGTTTGCTC 59.198 45.455 15.54 3.80 41.28 4.26
2673 6385 2.485302 GGCCCAGAACAATTTGTTTGCT 60.485 45.455 15.54 6.90 41.28 3.91
2674 6386 1.872952 GGCCCAGAACAATTTGTTTGC 59.127 47.619 15.54 14.50 41.28 3.68
2675 6387 3.070015 AGAGGCCCAGAACAATTTGTTTG 59.930 43.478 15.54 14.09 41.28 2.93
2676 6388 3.070015 CAGAGGCCCAGAACAATTTGTTT 59.930 43.478 15.54 4.14 41.28 2.83
2677 6389 2.629617 CAGAGGCCCAGAACAATTTGTT 59.370 45.455 14.42 14.42 44.37 2.83
2678 6390 2.158475 TCAGAGGCCCAGAACAATTTGT 60.158 45.455 0.00 0.00 0.00 2.83
2688 6410 2.641305 CTTCAGAAATCAGAGGCCCAG 58.359 52.381 0.00 0.00 0.00 4.45
2709 6431 7.353414 TGAGACACTTCCTTATCATCTAAGG 57.647 40.000 4.92 4.92 44.11 2.69
2710 6432 9.474920 GAATGAGACACTTCCTTATCATCTAAG 57.525 37.037 0.00 0.00 0.00 2.18
2792 6515 0.540365 TTTGGAAGGCAAGGCAGAGG 60.540 55.000 0.00 0.00 0.00 3.69
2793 6516 1.331214 TTTTGGAAGGCAAGGCAGAG 58.669 50.000 0.00 0.00 0.00 3.35
2794 6517 2.014010 ATTTTGGAAGGCAAGGCAGA 57.986 45.000 0.00 0.00 0.00 4.26
2795 6518 2.417787 GCTATTTTGGAAGGCAAGGCAG 60.418 50.000 0.00 0.00 0.00 4.85
2796 6519 1.550072 GCTATTTTGGAAGGCAAGGCA 59.450 47.619 0.00 0.00 0.00 4.75
2797 6520 1.550072 TGCTATTTTGGAAGGCAAGGC 59.450 47.619 0.00 0.00 0.00 4.35
2798 6521 3.091545 TCTGCTATTTTGGAAGGCAAGG 58.908 45.455 0.00 0.00 32.43 3.61
2799 6522 4.789012 TTCTGCTATTTTGGAAGGCAAG 57.211 40.909 0.00 0.00 32.43 4.01
2800 6523 5.543507 TTTTCTGCTATTTTGGAAGGCAA 57.456 34.783 0.00 0.00 32.43 4.52
2801 6524 5.337491 GGATTTTCTGCTATTTTGGAAGGCA 60.337 40.000 0.00 0.00 0.00 4.75
2860 6583 4.092091 GTGACAAGCTACATGTAGTGCTTC 59.908 45.833 28.95 20.90 40.29 3.86
3061 6794 1.336125 ACAGCAAAGAAACAGAGCAGC 59.664 47.619 0.00 0.00 0.00 5.25
3078 6811 3.637998 ATGAAACAGAGCAAGCAACAG 57.362 42.857 0.00 0.00 0.00 3.16
3083 6816 2.719426 AGCAATGAAACAGAGCAAGC 57.281 45.000 0.00 0.00 0.00 4.01
3131 6887 1.765161 TATCTGCGCGCTCAACATGC 61.765 55.000 33.29 0.00 0.00 4.06
3180 6936 0.170339 TGAGTGCCAGTATGTCGTCG 59.830 55.000 0.00 0.00 0.00 5.12


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.